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theiagen · Dec 11, 2024 · de976bf · de976bf
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Showing 2 changed files with 23 additions and 3 deletions.
diff --git a/main/search/search_index.json b/main/search/search_index.json
diff --git a/main/workflows/phylogenetic_construction/augur/index.html b/main/workflows/phylogenetic_construction/augur/index.html
@@ -5606,9 +5606,24 @@ <h4 id="augur-outputs">Augur Outputs<a class="headerlink" href="#augur-outputs"
 <td>A FASTA file of the aligned genomes</td>
 </tr>
 <tr>
+<td>augur_fasttree_version</td>
+<td>String</td>
+<td>The fasttree version used, blank if other tree method used</td>
+</tr>
+<tr>
 <td>augur_iqtree_model_used</td>
 <td>String</td>
-<td>The iqtree model used during augur tree</td>
+<td>The iqtree model used during augur tree, blank if iqtree not used</td>
+</tr>
+<tr>
+<td>augur_iqtree_version</td>
+<td>String</td>
+<td>The iqtree version used during augur tree (defualt), blank if other tree method used</td>
+</tr>
+<tr>
+<td>augur_mafft_version</td>
+<td>String</td>
+<td>The mafft version used in augur align</td>
 </tr>
 <tr>
 <td>augur_phb_analysis_date</td>
@@ -5621,6 +5636,11 @@ <h4 id="augur-outputs">Augur Outputs<a class="headerlink" href="#augur-outputs"
 <td>The version of the Public Health Bioinformatics (PHB) repository used</td>
 </tr>
 <tr>
+<td>augur_raxml_version</td>
+<td>String</td>
+<td>The version of raxml used during augur tree, blank if other tree method used</td>
+</tr>
+<tr>
 <td>augur_version</td>
 <td>String</td>
 <td>Version of Augur used</td>
@@ -5706,7 +5726,7 @@ <h3 id="references">References<a class="headerlink" href="#references" title="Pe
     <span class="md-icon" title="Last update">
       <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M21 13.1c-.1 0-.3.1-.4.2l-1 1 2.1 2.1 1-1c.2-.2.2-.6 0-.8l-1.3-1.3c-.1-.1-.2-.2-.4-.2m-1.9 1.8-6.1 6V23h2.1l6.1-6.1zM12.5 7v5.2l4 2.4-1 1L11 13V7zM11 21.9c-5.1-.5-9-4.8-9-9.9C2 6.5 6.5 2 12 2c5.3 0 9.6 4.1 10 9.3-.3-.1-.6-.2-1-.2s-.7.1-1 .2C19.6 7.2 16.2 4 12 4c-4.4 0-8 3.6-8 8 0 4.1 3.1 7.5 7.1 7.9l-.1.2z"/></svg>
     </span>
-    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-iso_date">2024-12-03</span>
+    <span class="git-revision-date-localized-plugin git-revision-date-localized-plugin-iso_date">2024-12-10</span>
   </span>