quote it

theiagen · Dec 16, 2024 · e2407d4 · e2407d4
1 parent 4fbb73e
commit e2407d4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tasks/utilities/file_handling/task_cat_lanes.wdl b/tasks/utilities/file_handling/task_cat_lanes.wdl
@@ -32,7 +32,7 @@ task cat_lanes {
 
     cat ~{read1_lane1} ~{read1_lane2} ~{read1_lane3} ~{read1_lane4} > "~{samplename}_merged_R1.fastq.gz"
 
-    if exists ~{read2_lane1} ; then
+    if exists "~{read2_lane1}" ; then
       cat ~{read2_lane1} ~{read2_lane2} ~{read2_lane3} ~{read2_lane4} > "~{samplename}_merged_R2.fastq.gz"
     fi