Update src/components/SingleRow.jsx

theosanderson · Aug 3, 2023 · d21b0aa · d21b0aa
1 parent c35a32b
commit d21b0aa
Showing 1 changed file with 1 addition and 154 deletions.
diff --git a/src/components/SingleRow.jsx b/src/components/SingleRow.jsx
@@ -1,160 +1,7 @@
 import ColorHash from "color-hash";
-import { getReverseComplement, filterFeatures } from "../utils";
+import { getReverseComplement, filterFeatures, getColor, codonToAminoAcid } from "../utils";
 var colorHash = new ColorHash({ lightness: [0.75, 0.9, 0.7, 0.8] });
 
-const getColor = (feature, product) => {
-  switch (feature.type) {
-    case "CDS":
-      switch (feature.name) {
-        case "S":
-          return "#ff7373";
-        case "nsp3":
-          return "#d3ffce";
-
-        case "leader":
-          return "#ff7f50";
-
-        case "nsp2":
-          return "#ddffdd";
-
-        case "nsp4":
-          return "#ff7373";
-
-        case "N":
-          return "#7fffd4";
-        case "E":
-          return "#ff7f50";
-        case "M":
-          return "#eeee88";
-        case "nsp12; RdRp":
-          return "#ff7f50";
-        case "nsp6":
-          return "#ee99ee";
-        case "nsp7":
-          return "#99ee99";
-
-        case "nsp8":
-          return "#ff7373";
-        case "nsp10":
-          return "#d3ffce";
-
-        case "nsp14":
-          return "#ff7f50";
-        case "nsp15":
-          return "#ddffdd";
-        case "nsp16":
-          return "#ffeeee";
-        case "nsp13":
-          return "#ff7f50";
-
-        default:
-          return colorHash.hex(feature.name + product + feature.type);
-      }
-    case "gene":
-      return "blue";
-    case "misc_feature":
-      return "green";
-    case "5'UTR":
-      return "orange";
-    case "3'UTR":
-      return "orange";
-    default:
-      return colorHash.hex(feature.name + product + feature.type);
-  }
-};
-
-const codonToAminoAcid = (codon) => {
-  switch (codon) {
-    case "TTT":
-    case "TTC":
-      return "F";
-    case "TTA":
-    case "TTG":
-    case "CTT":
-    case "CTC":
-    case "CTA":
-    case "CTG":
-      return "L";
-    case "ATT":
-    case "ATC":
-    case "ATA":
-      return "I";
-    case "ATG":
-      return "M";
-    case "GTT":
-    case "GTC":
-    case "GTA":
-    case "GTG":
-      return "V";
-    case "TCT":
-    case "TCC":
-    case "TCA":
-    case "TCG":
-    case "AGT":
-    case "AGC":
-      return "S";
-    case "CCT":
-    case "CCC":
-    case "CCA":
-    case "CCG":
-      return "P";
-    case "ACT":
-    case "ACC":
-    case "ACA":
-    case "ACG":
-      return "T";
-    case "GCT":
-    case "GCC":
-    case "GCA":
-    case "GCG":
-      return "A";
-    case "TAT":
-    case "TAC":
-      return "Y";
-    case "TAA":
-    case "TAG":
-    case "TGA":
-      return "*";
-    case "CAT":
-    case "CAC":
-      return "H";
-    case "CAA":
-    case "CAG":
-      return "Q";
-    case "AAT":
-    case "AAC":
-      return "N";
-    case "AAA":
-    case "AAG":
-      return "K";
-    case "GAT":
-    case "GAC":
-      return "D";
-    case "GAA":
-    case "GAG":
-      return "E";
-    case "TGT":
-    case "TGC":
-      return "C";
-    case "TGG":
-      return "W";
-    case "CGT":
-    case "CGC":
-    case "CGA":
-    case "CGG":
-    case "AGA":
-    case "AGG":
-      return "R";
-    case "GGT":
-    case "GGC":
-    case "GGA":
-    case "GGG":
-      return "G";
-    default:
-      return "X";
-  }
-};
-
 const SingleRow = ({
   parsedSequence,
   rowStart,