From 196288a9bca6be2a65386b177011f205cd01d812 Mon Sep 17 00:00:00 2001 From: Theo Sanderson Date: Wed, 6 Sep 2023 22:58:07 +0100 Subject: [PATCH] a --- taxoniumtools/src/taxoniumtools/ushertools.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/taxoniumtools/src/taxoniumtools/ushertools.py b/taxoniumtools/src/taxoniumtools/ushertools.py index 3b6c7b69..bf07e3ec 100644 --- a/taxoniumtools/src/taxoniumtools/ushertools.py +++ b/taxoniumtools/src/taxoniumtools/ushertools.py @@ -323,7 +323,7 @@ def perform_aa_analysis(self): pbar, self.nuc_to_codon) root_muts = self.create_mutation_like_objects_to_record_root_seq() self.tree.root.aa_muts = get_mutations( - {}, root_muts, seq, self.cdses, disable_check_for_differences=True) + {}, root_muts, seq, self.nuc_to_codon, disable_check_for_differences=True) self.tree.root.nuc_mutations = root_muts def load_genbank_file(self, genbank_file):