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theosanderson authored Nov 7, 2024
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Showing 1 changed file with 203 additions and 25 deletions.
228 changes: 203 additions & 25 deletions taxonium_website/src/trees.json
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{
"sars-cov-2/public": {
"backend": "https://api.cov2tree.org",
"title": "SARS-CoV-2",
"description": "All seven million public sequences of SARS-CoV-2 from the INSDC databases",
"legacyHostnames": ["cov2tree.org"]
"backend": "https://api.cov2tree.org",
"title": "SARS-CoV-2",
"description": "All seven million public sequences of SARS-CoV-2 from the INSDC databases",
"legacyHostnames": [
"cov2tree.org"
]
},
"sars-cov-2/viridian": {
"backend": "https://viridian-api.cov2tree.org",
"title": "SARS-CoV-2 Viridian",
"description": "SARS-CoV-2 sequences processed through Viridian pipeline",
"legacyHostnames": ["viridian.taxonium.org"]
"backend": "https://viridian-api.cov2tree.org",
"title": "SARS-CoV-2 Viridian",
"description": "SARS-CoV-2 sequences processed through Viridian pipeline",
"legacyHostnames": [
"viridian.taxonium.org"
]
},
"mpox/public": {
"protoUrl": "https://mpx-tree.vercel.app/mpx.jsonl.gz",
"configUrl": "https://mpx-tree.vercel.app/config.json",
"title": "Mpox",
"description": "Mpox sequences from GenBank",
"legacyHostnames": ["mpx.taxonium.org"]
"protoUrl": "https://mpx-tree.vercel.app/mpx.jsonl.gz",
"configUrl": "https://mpx-tree.vercel.app/config.json",
"title": "Mpox",
"description": "Mpox sequences from GenBank",
"legacyHostnames": [
"mpx.taxonium.org"
]
},
"taxonomy/full": {
"treeUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/tree.nwk.gz",
"metaUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/metadata.tsv.gz",
"configUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/config.json",
"ladderizeTree": true,
"title": "NCBI Taxonomy (full)",
"description": "Full 2.2M NCBI Taxonomy of species",
"legacyHostnames": ["taxonomy.taxonium.org"]
"treeUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/tree.nwk.gz",
"metaUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/metadata.tsv.gz",
"configUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/config.json",
"ladderizeTree": true,
"title": "NCBI Taxonomy (full)",
"description": "Full 2.2M NCBI Taxonomy of species",
"legacyHostnames": [
"taxonomy.taxonium.org"
]
},
"taxonomy/visual": {
"protoUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/wikidata/out.jsonl.gz",
"title": "Wikidata visual tree of life",
"description": "The tree of life, showing species from Wikidata with images. Links to Wikipedia.",
"legacyHostnames": ["visualtreeoflife.taxonium.org"]
"protoUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/wikidata/out.jsonl.gz",
"title": "Wikidata visual tree of life",
"description": "The tree of life, showing species from Wikidata with images. Links to Wikipedia.",
"legacyHostnames": [
"visualtreeoflife.taxonium.org"
]
},
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},
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},
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},
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}
}
}

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