From dfb023dab8d7849a15238fa27a66755dac9413c9 Mon Sep 17 00:00:00 2001 From: Theo Sanderson Date: Thu, 7 Nov 2024 12:19:49 +0000 Subject: [PATCH] trees --- taxonium_website/src/trees.json | 228 ++++++++++++++++++++++++++++---- 1 file changed, 203 insertions(+), 25 deletions(-) diff --git a/taxonium_website/src/trees.json b/taxonium_website/src/trees.json index 431021bd..a1921314 100644 --- a/taxonium_website/src/trees.json +++ b/taxonium_website/src/trees.json @@ -1,36 +1,214 @@ { "sars-cov-2/public": { - "backend": "https://api.cov2tree.org", - "title": "SARS-CoV-2", - "description": "All seven million public sequences of SARS-CoV-2 from the INSDC databases", - "legacyHostnames": ["cov2tree.org"] + "backend": "https://api.cov2tree.org", + "title": "SARS-CoV-2", + "description": "All seven million public sequences of SARS-CoV-2 from the INSDC databases", + "legacyHostnames": [ + "cov2tree.org" + ] }, "sars-cov-2/viridian": { - "backend": "https://viridian-api.cov2tree.org", - "title": "SARS-CoV-2 Viridian", - "description": "SARS-CoV-2 sequences processed through Viridian pipeline", - "legacyHostnames": ["viridian.taxonium.org"] + "backend": "https://viridian-api.cov2tree.org", + "title": "SARS-CoV-2 Viridian", + "description": "SARS-CoV-2 sequences processed through Viridian pipeline", + "legacyHostnames": [ + "viridian.taxonium.org" + ] }, "mpox/public": { - "protoUrl": "https://mpx-tree.vercel.app/mpx.jsonl.gz", - "configUrl": "https://mpx-tree.vercel.app/config.json", - "title": "Mpox", - "description": "Mpox sequences from GenBank", - "legacyHostnames": ["mpx.taxonium.org"] + "protoUrl": "https://mpx-tree.vercel.app/mpx.jsonl.gz", + "configUrl": "https://mpx-tree.vercel.app/config.json", + "title": "Mpox", + "description": "Mpox sequences from GenBank", + "legacyHostnames": [ + "mpx.taxonium.org" + ] }, "taxonomy/full": { - "treeUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/tree.nwk.gz", - "metaUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/metadata.tsv.gz", - "configUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/config.json", - "ladderizeTree": true, - "title": "NCBI Taxonomy (full)", - "description": "Full 2.2M NCBI Taxonomy of species", - "legacyHostnames": ["taxonomy.taxonium.org"] + "treeUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/tree.nwk.gz", + "metaUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/metadata.tsv.gz", + "configUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/ncbi/config.json", + "ladderizeTree": true, + "title": "NCBI Taxonomy (full)", + "description": "Full 2.2M NCBI Taxonomy of species", + "legacyHostnames": [ + "taxonomy.taxonium.org" + ] }, "taxonomy/visual": { - "protoUrl": "https://cov2tree.nyc3.digitaloceanspaces.com/wikidata/out.jsonl.gz", - "title": "Wikidata visual tree of life", - "description": "The tree of life, showing species from Wikidata with images. 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