From 7c6116b7be5bab807437f4e0e4f4831196e78437 Mon Sep 17 00:00:00 2001
From: Theo Sanderson <theo@sndrsn.co.uk>
Date: Fri, 3 May 2024 15:12:09 +0100
Subject: [PATCH 1/3] md_links

---
 taxonium_component/src/utils/processNextstrain.js | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

diff --git a/taxonium_component/src/utils/processNextstrain.js b/taxonium_component/src/utils/processNextstrain.js
index 5038fe4c..b3de6664 100644
--- a/taxonium_component/src/utils/processNextstrain.js
+++ b/taxonium_component/src/utils/processNextstrain.js
@@ -428,9 +428,19 @@ async function json_to_tree(json) {
     config.enabled_by_gisaid = true;
   }
 
-  config.overlay = `<p>This is a tree extracted from a <a href='//nextstrain.org'>Nextstrain</a> JSON file, being visualised in Taxonium.</p>.`;
+  function markdownToHTML(md) {
+    // Regular expression to match Markdown links
+    var markdownLinkRegex = /\[([^\]]+)\]\(([^)]+)\)/g;
+    
+    // Replace Markdown links with HTML <a> tags
+    var html = md.replace(markdownLinkRegex, '<a class="underline" href="$2">$1</a>');
+    
+    return html;
+}
+
+  config.overlay = `<p>This is a tree extracted from a <a class='underline' href='//nextstrain.org'>Nextstrain</a> JSON file, being visualised in Taxonium.</p>.`;
   if (json.meta.description) {
-    config.overlay = config.overlay + "<p>" + json.meta.description + "</p>";
+    config.overlay = config.overlay + "<p>" + markdownToHTML(json.meta.description) + "</p>";
   }
 
   if (json.meta && json.meta.updated) {

From 500b959ed1cf1d0be955173f1a9c4d29ef1d898e Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Fri, 3 May 2024 14:12:56 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 taxonium_component/src/utils/processNextstrain.js | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/taxonium_component/src/utils/processNextstrain.js b/taxonium_component/src/utils/processNextstrain.js
index b3de6664..a26ba900 100644
--- a/taxonium_component/src/utils/processNextstrain.js
+++ b/taxonium_component/src/utils/processNextstrain.js
@@ -431,16 +431,20 @@ async function json_to_tree(json) {
   function markdownToHTML(md) {
     // Regular expression to match Markdown links
     var markdownLinkRegex = /\[([^\]]+)\]\(([^)]+)\)/g;
-    
+
     // Replace Markdown links with HTML <a> tags
-    var html = md.replace(markdownLinkRegex, '<a class="underline" href="$2">$1</a>');
-    
+    var html = md.replace(
+      markdownLinkRegex,
+      '<a class="underline" href="$2">$1</a>'
+    );
+
     return html;
-}
+  }
 
   config.overlay = `<p>This is a tree extracted from a <a class='underline' href='//nextstrain.org'>Nextstrain</a> JSON file, being visualised in Taxonium.</p>.`;
   if (json.meta.description) {
-    config.overlay = config.overlay + "<p>" + markdownToHTML(json.meta.description) + "</p>";
+    config.overlay =
+      config.overlay + "<p>" + markdownToHTML(json.meta.description) + "</p>";
   }
 
   if (json.meta && json.meta.updated) {

From 4c91a1db7993416d33d3e15f594c99b343ae7520 Mon Sep 17 00:00:00 2001
From: Theo Sanderson <theo@sndrsn.co.uk>
Date: Fri, 3 May 2024 15:17:33 +0100
Subject: [PATCH 3/3] update

---
 taxonium_component/src/components/SearchPanel.jsx | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/taxonium_component/src/components/SearchPanel.jsx b/taxonium_component/src/components/SearchPanel.jsx
index b5aa5343..f7eff11c 100644
--- a/taxonium_component/src/components/SearchPanel.jsx
+++ b/taxonium_component/src/components/SearchPanel.jsx
@@ -273,7 +273,7 @@ function SearchPanel({
               )}
             </p>
             {config.enabled_by_gisaid && (
-              <span>
+              <span className="text-gray-500 mt-1">
                 Enabled by data from{" "}
                 <a
                   rel="noopener noreferrer"
@@ -284,6 +284,7 @@ function SearchPanel({
                     src="https://www.gisaid.org/fileadmin/gisaid/img/schild.png"
                     alt="gisaid-logo"
                     width="65"
+                    className="inline-block"
                   />
                 </a>
                 .