|
1 |
| -This is a resubmission fixing two minor issues. |
| 1 | +This is a patch release to fix the new R-devel warning. |
2 | 2 |
|
3 | 3 | ---
|
4 | 4 |
|
5 | 5 | ## Test environments
|
6 |
| -* OS X, R 3.3.1 |
7 |
| -* Ubuntu 14.04, R 3.3.1 |
| 6 | +* OS X, R 3.3.2 |
| 7 | +* Ubuntu 14.04, R 3.3.2 |
8 | 8 | * win-builder (devel and release)
|
9 | 9 |
|
10 | 10 | ## R CMD check results
|
11 | 11 |
|
12 |
| -There were no ERRORs or WARNINGs. I see two NOTEs: |
13 |
| - |
14 |
| -* Found the following (possibly) invalid URLs: |
15 |
| - URL: http://fueleconomy.gov |
16 |
| - From: man/mpg.Rd |
17 |
| - Status: 404 Message: Not Found |
18 |
| - |
19 |
| - I think the problem is a poorly configured webserver: |
20 |
| - `curl http://fueleconomy.gov` works, but `curl -I http://fueleconomy.gov` |
21 |
| - (which sends a HEAD request) does not. |
22 |
| - |
23 |
| -* checking DESCRIPTION meta-information ... NOTE |
24 |
| - Authors@R field gives persons with non-standard roles: |
25 |
| - RStudio [cph, fnd]: fnd |
26 |
| - |
27 |
| - I would rely like to capture the signficant funders in the authors list |
28 |
| - so that can be correctly acknowledged. |
| 12 | +There were no ERRORs, WARNING or NOTEs |
29 | 13 |
|
30 | 14 | ## Reverse dependencies
|
31 | 15 |
|
32 |
| -* I ran `R CMD check` on 954 all reverse dependencies |
33 |
| - (summary at https://github.com/hadley/ggplot2/blob/master/revdep/). |
34 |
| - |
35 |
| -* Maintainers with NOTEs, WARNINGs, or ERRORS were notified on Oct 6, |
36 |
| - Oct 25, and again today. |
37 |
| - |
38 |
| -* There are a lot of WARNINGS/ERRORs, but I've carefully reviewed them |
39 |
| - all and as far as I can tell they are either deliberate changes to |
40 |
| - the ggplot2 API, or unrelated problems. I'm sorry there are so many - |
41 |
| - I don't know how to better encourage package authors to submit |
42 |
| - updates. Every maintainer has been personally emailed at least twice |
43 |
| - before today. |
44 |
| - |
45 |
| -### ggproto mistake |
46 |
| - |
47 |
| -I unfortunately made an implementation error in ggproto (the OO system that ggplot2 uses) that inadvertently introduced a build-time dependency on ggplot2. I've fixed the problem and added a clear error message, but to fix a number of downstream failures will require a rebuild of the following packages against the new version of ggplot2: |
48 |
| - |
49 |
| -* ggrepel (GeomTextRepel) |
50 |
| -* ggmap (GeomRasterAnn) |
51 |
| -* ggpmisc (statpeaks) |
52 |
| -* ggbeeswarm (PositionQuasirandom) |
53 |
| - |
54 |
| -This problem affects the following downstream packgaes: |
55 |
| - |
56 |
| -* archivist: checking examples ... ERROR |
57 |
| -* clustrd: checking examples ... ERROR |
58 |
| -* clifro: checking re-building of vignette outputs ... WARNING |
59 |
| -* corrr: checking examples ... ERROR |
60 |
| -* factoextra: checking examples ... ERROR |
61 |
| -* ggnetwork: checking examples ... ERROR |
62 |
| -* ggpmisc: checking examples ... ERROR |
63 |
| -* ggpubr: checking examples ... ERROR |
64 |
| -* idm: checking examples ... ERROR |
65 |
| -* OutbreakTools: checking examples ... ERROR |
66 |
| -* photobiologyInOut: checking re-building of vignette outputs ... WARNING |
67 |
| -* photobiologyLamps: checking re-building of vignette outputs ... WARNING |
68 |
| -* photobiologyLEDs: checking re-building of vignette outputs ... WARNING |
69 |
| -* photobiologyPlants: checking re-building of vignette outputs ... WARNING |
70 |
| -* SensusR: checking examples ... ERROR |
71 |
| -* sjPlot: checking examples ... ERROR |
72 |
| -* soc.ca: checking examples ... ERROR |
73 |
| -* trackeR: checking re-building of vignette outputs ... WARNING |
74 |
| -* vipor: checking re-building of vignette outputs ... WARNING |
75 |
| - |
76 |
| -### ggplot2 changes |
77 |
| - |
78 |
| -Need dev version of plotly: the maintainer is planning on submitting ASAP: |
79 |
| - |
80 |
| -* eechidna: checking examples ... ERROR |
81 |
| -* heatmaply: checking examples ... ERROR |
82 |
| -* MendelianRandomization: checking examples ... ERROR |
83 |
| -* plotly: checking examples ... ERROR |
84 |
| - |
85 |
| -Errors that were silent, but now break thanks to stricter checks: |
86 |
| - |
87 |
| -* biogram: checking re-building of vignette outputs ... WARNING |
88 |
| -* BlandAltmanLeh: checking re-building of vignette outputs ... WARNING |
89 |
| -* brms: checking tests ... ERROR |
90 |
| -* CopulaDTA: checking re-building of vignette outputs ... WARNING |
91 |
| -* ddpcr: checking re-building of vignette outputs ... WARNING |
92 |
| -* fheatmap: checking examples ... ERROR |
93 |
| -* gapfill: checking examples ... ERROR |
94 |
| -* ggExtra: checking examples ... ERROR |
95 |
| -* iNEXT: checking re-building of vignette outputs ... WARNING |
96 |
| -* largeVis: checking re-building of vignette outputs ... WARNING |
97 |
| -* MEGENA: checking re-building of vignette outputs ... WARNING |
98 |
| -* obAnalytics: checking examples ... ERROR |
99 |
| -* oddsratio: checking examples ... ERROR |
100 |
| -* onlineCPD: checking examples ... ERROR |
101 |
| -* PGRdup: checking re-building of vignette outputs ... WARNING |
102 |
| -* quickpsy: checking examples ... ERROR |
103 |
| -* sparkTable: checking examples ... ERROR |
104 |
| -* surveillance: checking re-building of vignette outputs ... WARNING |
105 |
| -* survMisc: checking examples ... ERROR |
106 |
| -* UpSetR: checking re-building of vignette outputs ... WARNING |
107 |
| - |
108 |
| -Some packages rely on internal object definitions, and haven't yet been updated for this version: |
109 |
| - |
110 |
| -* geomnet: checking examples ... ERROR |
111 |
| -* GGally: checking examples ... ERROR |
112 |
| -* ggalt: checking examples ... ERROR |
113 |
| -* hyperSpec: checking examples ... ERROR |
114 |
| -* manhattanly: checking re-building of vignette outputs ... WARNING |
115 |
| -* mtconnectR: checking tests ... ERROR |
116 |
| -* quanteda: checking tests ... ERROR |
117 |
| -* rstanarm: checking examples ... ERROR |
118 |
| -* tabplot: checking examples ... ERROR |
119 |
| -* vdmR: checking examples ... ERROR |
120 |
| - |
121 |
| -Two use a newly deprecated argument: |
122 |
| - |
123 |
| -* plotluck: checking tests ... ERROR |
124 |
| -* robCompositions: checking re-building of vignette outputs ... WARNING |
125 |
| - |
126 |
| -### Problems unrelated to ggplot2 |
127 |
| - |
128 |
| -Failed to installed suggested package used in examples or vignettes: |
129 |
| - |
130 |
| -* bcrm: checking examples ... ERROR |
131 |
| -* BCEA: checking examples ... ERROR |
132 |
| -* coloc: checking re-building of vignette outputs ... WARNING |
133 |
| -* emojifont: checking re-building of vignette outputs ... WARNING |
134 |
| -* fuzzyforest: checking examples ... ERROR |
135 |
| -* glycanr: checking examples ... ERROR |
136 |
| -* GenCAT: checking examples ... ERROR |
137 |
| -* ie2miscdata: checking re-building of vignette outputs ... WARNING |
138 |
| -* MixSIAR: checking examples ... ERROR |
139 |
| -* slim: checking re-building of vignette outputs ... WARNING |
140 |
| -* survminer: checking examples ... ERROR |
141 |
| -* tcgsaseq: checking examples ... ERROR |
142 |
| -* TELP: checking examples ... ERROR |
143 |
| - |
144 |
| -Dependency of Hmisc on bleeding-edge survival: |
145 |
| - |
146 |
| -* choroplethr: checking re-building of vignette outputs ... WARNING |
147 |
| -* Greg: checking examples ... ERROR |
148 |
| -* hdnom: checking examples ... ERROR |
149 |
| -* pander: checking re-building of vignette outputs ... WARNING |
150 |
| -* simcausal: checking re-building of vignette outputs ... WARNING |
151 |
| - |
152 |
| -Needs java: |
153 |
| - |
154 |
| -* mlr: checking examples ... ERROR |
155 |
| -* prcbench: checking examples ... ERROR |
156 |
| -* rfordummies: checking examples ... ERROR |
157 |
| -* userfriendlyscience: checking examples ... ERROR |
158 |
| - |
159 |
| -Other/unknown: |
160 |
| - |
161 |
| -* BioPET: checking examples ... ERROR |
162 |
| - Calling mean on non-numeric object |
163 |
| - |
164 |
| -* ecb: checking tests ... ERROR |
165 |
| - Seems to be some badness in tests of remote server |
166 |
| - |
167 |
| -* fitbitScraper: checking re-building of vignette outputs ... WARNING |
168 |
| - Looks related to RCurl |
169 |
| - |
170 |
| -* ggenealogy: checking re-building of vignette outputs ... WARNING |
171 |
| - Looks like encoding related issues in vignette |
172 |
| - |
173 |
| -* ggfortify: checking tests ... ERROR |
174 |
| - Don't know what's causing these failures |
175 |
| - |
176 |
| -* ParamHelpers: checking tests ... ERROR |
177 |
| - Failing test appears unrelated to ggplot2 |
178 |
| - |
179 |
| -* PredictTestbench: checking re-building of vignette outputs ... WARNING |
180 |
| - Missing `pred` arugment |
181 |
| - |
182 |
| -* xtractomatic: checking re-building of vignette outputs ... WARNING |
183 |
| - Failed to open connection |
184 |
| - |
185 |
| -Existing R CMD check failures: |
186 |
| - |
187 |
| -* proportion: checking sizes of PDF files under ‘inst/doc’ ... WARNING |
188 |
| -* Rz: checking dependencies in R code ... WARNING |
189 |
| -* simmer: checking compiled code ... WARNING |
190 |
| - |
191 |
| -Failed to install dependencies for: aop, BACA, cate, clusterfly, demi, gitter, |
192 |
| - gridDebug, Hmisc, HTSSIP, ibmdbR, IntClust, LANDD, LDheatmap, MetaIntegrator, |
193 |
| - metaMix, multiDimBio, myTAI, NFP, PKgraph, PlasmaMutationDetector, pRF, PSCBS, |
194 |
| - raptr, rms, RPPanalyzer, scmamp, SeqFeatR, snpEnrichment, specmine, starmie, |
195 |
| - structSSI, TcGSA, toaster |
196 |
| - |
197 |
| -Failed to install: BACCT, backShift, bamdit, brainGraph, bsam, BTSPAS, |
198 |
| - classify, CollapsABEL, crmPack, Crossover, Deducer, DiversityOccupancy, |
199 |
| - DynNom, dynr, Fgmutils, funModeling, G2Sd, ggtern, greport, IAPWS95, |
200 |
| - imageData, imager, InSilicoVA, llama, localgauss, ltbayes, magick, |
201 |
| - MergeGUI, MissingDataGUI, morse, mrMLM, mwaved, npregfast, OpenStreetMap, |
202 |
| - openVA, OriGen, pcaPA, pcrsim, playwith, PortfolioEffectHFT, qdap, ReporteRs, |
203 |
| - RJafroc, rmcfs, rrepast, RSA, rstan, rsvg, SEERaBomb, seewave, simmr, spcosa, |
204 |
| - StroupGLMM, strvalidator, subspaceMOA, UBL, UsingR, vmsbase, x.ent, XGR, |
205 |
| - XLConnect |
206 |
| - |
207 |
| -### False positives |
208 |
| - |
209 |
| -These seem to be a couple of false positives: neither I nor the maintainers could reproduce outside of my revdep check setup: |
210 |
| - |
211 |
| -* radiant.model: checking examples ... ERROR |
212 |
| -* data.table: checking tests ... ERROR |
| 16 | +I did not run R CMD check as this change should not impact any downstream code. |
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