biblio.tex

@PhdThesis{these,
title = {Simulation of Polymer Translocation},
author = {Henk Vocks},
school = {Utrecht Universiteit},
year = {2008},
OPTmonth = {july},
}

@article{kasianowicz,
author = {Kasianowicz, John J. and Brandin, Eric and Branton, Daniel and Deamer, David W.}, 
title = {Characterization of individual polynucleotide molecules using a membrane channel}, 
year = {1996}, 
URL = {http://www.pnas.org/content/93/24/13770.abstract}, 
eprint = {http://www.pnas.org/content/93/24/13770.full.pdf+html}, 
journal = {Proceedings of the National Academy of Sciences} 
}


  	
@article{milchev,
  author={Andrey Milchev},
  title={Single-polymer dynamics under constraints: scaling theory and computer experiment},
  journal={Journal of Physics: Condensed Matter},
    url={http://stacks.iop.org/0953-8984/23/i=10/a=103101},
  year={2011},
}

@article{keyser,
author = {Ulrich F. Keyser}, 
title = {Controlling molecular transport through nanopores}, 
year = {2011}, 
doi = {10.1098/rsif.2011.0222},  
url = {http://rsif.royalsocietypublishing.org/content/early/2011/06/22/rsif.2011.0222.abstract}, 
eprint = {http://rsif.royalsocietypublishing.org/content/early/2011/06/22/rsif.2011.0222.full.pdf+html}, 
journal = {Journal of The Royal Society Interface} 
}


@article{sung,
  volume = {77},
  journal = {Physical Review Letters},
  author = {Sung, W. and Park, P. J.},
  url = {http://link.aps.org/doi/10.1103/PhysRevLett.77.783},
  doi = {10.1103/PhysRevLett.77.783},
  year = {1996},
  title = {Polymer Translocation through a Pore in a Membrane},
  issue = {4},
  publisher = {American Physical Society},
}

@article{storm,
author = {Storm, Arnold J. and Storm, Cornelis and Chen, Jianghua and Zandbergen, Henny and Joanny, Jean-François and Dekker, Cees},
title = {Fast DNA Translocation through a Solid-State Nanopore},
journal = {Nano Letters},
year = {2005},
doi = {10.1021/nl048030d},

URL = {http://pubs.acs.org/doi/abs/10.1021/nl048030d},
eprint = {http://pubs.acs.org/doi/pdf/10.1021/nl048030d}
}

@article{jchem,
author = {Margaret C. Linak and Richard Tourdot and Kevin D. Dorfman},
collaboration = {},
title = {Moving beyond Watson--Crick models of coarse grained DNA dynamics},
publisher = {AIP},
year = {2011},
journal = {The Journal of Chemical Physics},
keywords = {bonds (chemical); DNA; molecular biophysics; molecular configurations},
url = {http://link.aip.org/link/?JCP/135/205102/1},
doi = {10.1063/1.3662137}
}

@article{ holesedge,
Author = {Bayley, Hagan},
Title = {{Nanotechnology: Holes with an edge}},
Journal = {{Nature}},
Year = {{2010}},
ISSN = {{0028-0836}},
Unique-ID = {{ISI:000282273100028}},
}

@article{graph,
author = {Schneider, Grégory F. and Kowalczyk, Stefan W. and Calado, Victor E. and Pandraud, Grégory and Zandbergen, Henny W. and Vandersypen, Lieven M. K. and Dekker, Cees},
title = {DNA Translocation through Graphene Nanopores},
journal = {Nano Letters},
year = {2010},
doi = {10.1021/nl102069z},

URL = {http://pubs.acs.org/doi/abs/10.1021/nl102069z},
eprint = {http://pubs.acs.org/doi/pdf/10.1021/nl102069z}
}

@article{doublebrin,
author = {Sathe, Chaitanya and Zou, Xueqing and Leburton, Jean-Pierre and Schulten, Klaus},
title = {Computational Investigation of DNA Detection Using Graphene Nanopores},
journal = {ACS Nano},
year = {2011},
doi = {10.1021/nn202989w},

URL = {http://pubs.acs.org/doi/abs/10.1021/nn202989w},
eprint = {http://pubs.acs.org/doi/pdf/10.1021/nn202989w}
}

@article{lammps,
title = "Fast Parallel Algorithms for Short-Range Molecular Dynamics",
journal = "Journal of Computational Physics",
year = "1995",
note = "",
issn = "0021-9991",
doi = "10.1006/jcph.1995.1039",
url = "http://www.sciencedirect.com/science/article/pii/S002199918571039X",
author = "Steve Plimpton"
}

@article{traction,
  title = {Forced translocation of a polymer: Dynamical scaling versus molecular dynamics simulation},
  author = {Dubbeldam, J. L. A. and Rostiashvili, V. G. and Milchev, A. and Vilgis, T. A.},
  journal = {Physical Review E},
  year = {2012},
  doi = {10.1103/PhysRevE.85.041801},
  url = {http://link.aps.org/doi/10.1103/PhysRevE.85.041801},
  publisher = {American Physical Society}
}