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Dependency Versions #14

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MartGro opened this issue Aug 30, 2023 · 0 comments
Open

Dependency Versions #14

MartGro opened this issue Aug 30, 2023 · 0 comments

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@MartGro
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MartGro commented Aug 30, 2023

Hi,
I had some issues finding the right versions for pangolin to run.
It worked by running:

conda install python=3.6
pip3 install torch==1.8.2 torchvision==0.9.2 torchaudio==0.8.2 --extra-index-url https://download.pytorch.org/whl/lts/1.8/cpu
conda install -c conda-forge pyvcf
pip install gffutils biopython pandas pyfastx

Here are the conda and pip dependencies:
https://gist.github.com/MartGro/dfe979e79800a210faf0b85b43db62b0
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@MartGro