Software appplication for multifractal analysis on complete genomes (DNA and protein) using the sand-box method

Evaluate the output file from the simulation program for GSM Network

Slides and files for a talk I gave at NUS on 2012-08-30

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

A WGS de novo assembler based on the FMD-index for large genomes

Solving challenge from rosalind, a platform for learning bioinformatics and programming through problem solving.

Generate visualizations of whole genomes or small sequences

My PhD thesis

CloudDOE is a user friendly software package to deploy, operate and extend a MapReduce-based bioinformatics environment, which is collectively denoted as a CloudDOE Cloud.

A Python Implementation of MAVID Sequence Alignment for CPSC 445 (Algorithms for Bioinformatics)

Learning bioinformatics through problem solving at Rosalind

A de novo assembler for viral quasispecies using de Bruijn graphs and Markov chains

Perl module for interfacing with the R package MOSAiCS (http://www.stat.wisc.edu/~keles/Software/mosaics/index.html)

Bioinformatics search engine for protein isoelectric points

Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.

firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox

Haskell version of fragment assembly without physical potentials, but only with distance restraints and geometric checks

Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.

A collection of programs for Homework 4 in my Fall 2014 Intro to Bioinformatics class.

A small command line Python utility for retrieving FASTA sequences from NCBI databases.