fixing quiet option (#242)

* fixing quiet option

* updating docs

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: APCalign
 Title: Resolving Plant Taxon Names Using the Australian Plant Census
-Version: 1.1.0
+Version: 1.1.1
 Authors@R: c(
   person(given = "Daniel", family = "Falster", role = c("aut", "cre", "cph"), email = "[email protected]", comment = c(ORCID = "0000-0002-9814-092X")),
   person(given = "Elizabeth", family = "Wenk", role = c("aut", "ctb"), email = "[email protected]", comment = c(ORCID = "0000-0001-5640-5910")),
@@ -38,7 +38,7 @@ Suggests:
     here,
     testthat (>= 3.0.0)
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Config/testthat/edition: 3
 VignetteBuilder: knitr
 URL: https://traitecoevo.github.io/APCalign/, https://github.com/traitecoevo/APCalign

R/create_taxonomic_update_lookup.R

@@ -73,7 +73,7 @@
 #'  makes erroneous matches.
 #' @param identifier A dataset, location or other identifier,
 #'  which defaults to NA.
-#' @param quiet Logical to indicate whether to display messages while
+#' @param quiet Logical to indicate whether to display messages while loading data and 
 #'  aligning taxa.
 #' @param output file path to save the output. If this file already exists,
 #'  this function will check if it's a subset of the species passed in and try
@@ -167,7 +167,7 @@ create_taxonomic_update_lookup <- function(taxa,
                                            APNI_matches = TRUE, 
                                            imprecise_fuzzy_matches = FALSE, 
                                            identifier = NA_character_,
-                                           resources = load_taxonomic_resources(),
+                                           resources = load_taxonomic_resources(quiet = quiet),
                                            quiet = FALSE,
                                            output = NULL) {