From 53caff88b3193922a1617ed4c29cbe1905e57d35 Mon Sep 17 00:00:00 2001 From: Daniel Falster Date: Fri, 27 Oct 2023 12:53:26 +1100 Subject: [PATCH] Sort taxonomic updates in alphabetical order --- data/ABRS_1981/metadata.yml | 58 +- data/ABRS_2022/metadata.yml | 208 +- data/ABRS_2023/metadata.yml | 310 +- data/ANBG_2019/metadata.yml | 24 +- data/ATRP_2020/metadata.yml | 126 +- data/Angevin_2011/metadata.yml | 102 +- data/Apgaua_2015/metadata.yml | 2 +- data/Apgaua_2017/metadata.yml | 24 +- data/Atkinson_2020/metadata.yml | 2 +- data/Auld_2000/metadata.yml | 2 +- data/BRAIN_2007/metadata.yml | 8 +- data/Baker_2019/metadata.yml | 2 +- data/Bean_1997/metadata.yml | 2 +- data/Blackman_2010/metadata.yml | 4 +- data/Bloomfield_2018/metadata.yml | 6 +- data/Bradshaw_2022/metadata.yml | 4 +- data/Bragg_2002/metadata.yml | 2 +- data/Briggs_2010/metadata.yml | 2 +- data/Britton_1994/metadata.yml | 70 +- data/Brock_1993/metadata.yml | 30 +- data/Brodribb_2000/metadata.yml | 4 +- data/Buckton_2019/metadata.yml | 12 +- data/Burrows_2001/metadata.yml | 8 +- data/Burrows_2008/metadata.yml | 10 +- data/Burrows_2020/metadata.yml | 24 +- data/CPBR_2002/metadata.yml | 44 +- data/Caldwell_2016/metadata.yml | 2 +- data/Campbell_2006/metadata.yml | 20 +- data/Canham_2023/metadata.yml | 6 +- data/Catford_2014/metadata.yml | 54 +- data/Cernusak_2006/metadata.yml | 2 +- data/Cernusak_2011/metadata.yml | 6 +- data/Chandler_2002/metadata.yml | 2 +- data/Cheal_2017/metadata.yml | 165 +- data/Cheesman_2020/metadata.yml | 6 +- data/Chen_2017/metadata.yml | 44 +- data/Chinnock_2007/metadata.yml | 18 +- data/Choat_2006/metadata.yml | 4 +- data/Clarke_2009/metadata.yml | 112 +- data/Clarke_2015/metadata.yml | 638 +- data/Collette_2021/metadata.yml | 111 +- data/Cooper_2004/metadata.yml | 2 +- data/Cooper_2013/metadata.yml | 1020 ++-- data/Cowling_1987/metadata.yml | 2 +- data/Craven_1987/metadata.yml | 2 +- data/Craven_2010/metadata.yml | 4 +- data/Crisp_2017/metadata.yml | 6 +- data/Cross_2009/metadata.yml | 6 +- data/Crous_2013/metadata.yml | 2 +- data/Crous_2019/metadata.yml | 2 +- data/Crowley_2007/metadata.yml | 450 +- data/Cunningham_1999/metadata.yml | 6 +- data/Curran_2009/metadata.yml | 4 +- data/Curtis_2012/metadata.yml | 12 +- data/Detombeur_2021/metadata.yml | 2 +- data/Dong_2017/metadata.yml | 80 +- data/Draper_2023/metadata.yml | 330 +- data/Duan_2015/metadata.yml | 2 +- data/Duncan_1998/metadata.yml | 14 +- data/Dwyer_2017/metadata.yml | 14 +- data/Dwyer_2018/metadata.yml | 4 +- data/Eamus_2000/metadata.yml | 2 +- data/Edwards_2000/metadata.yml | 6 +- data/Ellsworth_2015/metadata.yml | 4 +- data/Enright_2014/metadata.yml | 190 +- data/EsperonRodriguez_2019/metadata.yml | 2 +- data/Everingham_2020/metadata.yml | 6 +- data/Falster_2003/metadata.yml | 6 +- data/Falster_2005_1/metadata.yml | 6 +- data/Falster_2005_2/metadata.yml | 6 +- data/Farrell_2012/metadata.yml | 4 +- data/Farrell_2013/metadata.yml | 2 +- data/Farrell_2017/metadata.yml | 8 +- data/Firn_2019/metadata.yml | 14 +- data/Fonseca_2000/metadata.yml | 90 +- data/French_2017/metadata.yml | 4 +- data/Funk_2016/metadata.yml | 10 +- data/Gallagher_2012/metadata.yml | 2 +- data/Gallagher_2015/metadata.yml | 152 +- data/Gallagher_2018/metadata.yml | 4 +- data/Gardiner_2019/metadata.yml | 2 +- data/Geange_2017/metadata.yml | 2 +- data/Geange_2020/metadata.yml | 2 +- data/Ghannoum_2010/metadata.yml | 10 +- data/Goble_1981/metadata.yml | 4 +- data/Gosper_2004/metadata.yml | 12 +- data/Gosper_2012/metadata.yml | 22 +- data/Gosper_2018/metadata.yml | 4 +- data/Gosper_2022/metadata.yml | 36 +- data/GrassBase_2014/metadata.yml | 12 +- data/Gray_2019/metadata.yml | 2 +- data/Grigg_2008/metadata.yml | 5 +- data/Groom_1997/metadata.yml | 30 +- data/Groom_2010/metadata.yml | 2 +- data/Grootemaat_2015/metadata.yml | 6 +- data/Grootemaat_2017_1/metadata.yml | 4 +- data/Grootemaat_2017_2/metadata.yml | 6 +- data/Gross_2005/metadata.yml | 248 +- data/Groves_1986/metadata.yml | 5 +- data/Grubb_1996/metadata.yml | 18 +- data/Grubb_2008/metadata.yml | 16 +- data/Guilherme_Pereira_2019/metadata.yml | 2 +- data/Hall_1981/metadata.yml | 4 +- data/Harrison_2009/metadata.yml | 8 +- data/Harvey_2017/metadata.yml | 2 +- data/Hassiotou_2009/metadata.yml | 2 +- data/Hayes_2014/metadata.yml | 2 +- data/Hayes_2018/metadata.yml | 2 +- data/He_2011/metadata.yml | 2 +- data/Henery_2001/metadata.yml | 12 +- data/Huang_2015/metadata.yml | 2 +- data/Hughes_1992/metadata.yml | 78 +- data/Hughes_2005/metadata.yml | 8 +- data/Hyland_2003/metadata.yml | 4 +- data/Ilic_2000/metadata.yml | 16 +- data/Islam_1999_1/metadata.yml | 8 +- data/Islam_1999_2/metadata.yml | 8 +- data/Jagdish_2020/metadata.yml | 34 +- data/Jin_2019/metadata.yml | 2 +- data/Jordan_2001/metadata.yml | 170 +- data/Jordan_2007/metadata.yml | 66 +- data/Jordan_2015/metadata.yml | 2 +- data/Jordan_2020/metadata.yml | 26 +- data/Jurado_1991/metadata.yml | 48 +- data/Jurado_1992/metadata.yml | 18 +- data/Kanowski_2000/metadata.yml | 46 +- data/Keighery_2004/metadata.yml | 2 +- data/Kew_2019_1/metadata.yml | 28 +- data/Kew_2019_2/metadata.yml | 2 +- data/Kew_2019_3/metadata.yml | 2 +- data/Kew_2019_4/metadata.yml | 2 +- data/Kew_2019_5/metadata.yml | 4 +- data/Kew_2019_6/metadata.yml | 6 +- data/Kirkpatrick_2020/metadata.yml | 2 +- data/Kocacinar_2003/metadata.yml | 2 +- data/Kooyman_2011/metadata.yml | 840 +-- data/Kotowska_2020/metadata.yml | 8 +- data/Kubiak_2009/metadata.yml | 106 +- data/Kuo_1982/metadata.yml | 4 +- data/Laliberte_2012/metadata.yml | 4 +- data/Lamont_2002/metadata.yml | 38 +- data/Lawes_2012/metadata.yml | 16 +- data/Lawson_2015/metadata.yml | 10 +- data/Laxton_2005/metadata.yml | 2 +- data/Lee_2019/metadata.yml | 2 +- data/Leigh_2003/metadata.yml | 2 +- data/Leigh_2006/metadata.yml | 2 +- data/Leishman_1992/metadata.yml | 20 +- data/Leishman_1993/metadata.yml | 72 +- data/Leishman_1995/metadata.yml | 104 +- data/Leishman_2007/metadata.yml | 24 +- data/Lewis_2015/metadata.yml | 2 +- data/Lim_2017/metadata.yml | 4 +- data/Lord_1997/metadata.yml | 50 +- data/Lunt_2012/metadata.yml | 46 +- data/Lusk_2010/metadata.yml | 2 +- data/Lusk_2012/metadata.yml | 2 +- data/Lusk_2014/metadata.yml | 4 +- data/MacinnisNg_2004/metadata.yml | 4 +- data/MacinnisNg_2016/metadata.yml | 2 +- data/Maslin_2012/metadata.yml | 24 +- data/McCarthy_2017/metadata.yml | 8 +- data/McGlone_2015/metadata.yml | 138 +- data/Meers_2007/metadata.yml | 42 +- data/Mesaglio_2022/metadata.yml | 12 +- data/Metcalfe_2009/metadata.yml | 16 +- data/Metcalfe_2020_1/metadata.yml | 26 +- data/Metcalfe_2020_2/metadata.yml | 32 +- data/Milberg_1998/metadata.yml | 6 +- data/Mitchell_2008/metadata.yml | 6 +- data/Mokany_2008/metadata.yml | 28 +- data/Mokany_2015/metadata.yml | 28 +- data/Moles_2000/metadata.yml | 22 +- data/Moles_2003/metadata.yml | 12 +- data/Moles_2011/metadata.yml | 22 +- data/Moore_2019/metadata.yml | 6 +- data/Moore_2019_2/metadata.yml | 16 +- data/Morgan_2005/metadata.yml | 16 +- data/Morgan_2011_1/metadata.yml | 80 +- data/Morgan_2011_2/metadata.yml | 4 +- data/Morgan_2014/metadata.yml | 44 +- data/Morgan_2021/metadata.yml | 2 +- data/Munroe_2019/metadata.yml | 32 +- data/NHNSW_2014/metadata.yml | 16 +- data/NHNSW_2014_2/metadata.yml | 304 +- data/NHNSW_2016/metadata.yml | 18 +- data/NHNSW_2022/metadata.yml | 155 +- data/NHNSW_2023/metadata.yml | 162 +- data/NSWFRD_2014/metadata.yml | 72 +- data/NTH_2014/metadata.yml | 114 +- data/NTH_2022/metadata.yml | 242 +- data/NTH_2023/metadata.yml | 234 +- data/Nano_2011/metadata.yml | 4034 ++++++------- data/Nicholson_2017/metadata.yml | 6 +- data/Nicolle_2006/metadata.yml | 458 +- data/Niinemets_2009/metadata.yml | 30 +- data/Nolan_2022/metadata.yml | 4 +- data/OReillyNugent_2018/metadata.yml | 2 +- data/Onoda_2010/metadata.yml | 2 +- data/Ooi_2007/metadata.yml | 28 +- data/Osborne_2014/metadata.yml | 16 +- data/Pate_1990/metadata.yml | 18 +- data/Pate_1998/metadata.yml | 76 +- data/Peeters_2002/metadata.yml | 4 +- data/Pekin_2011/metadata.yml | 10 +- data/Pfautsch_2016/metadata.yml | 24 +- data/Pickering_2014/metadata.yml | 48 +- data/Pickup_2002/metadata.yml | 2 +- data/Pickup_2005/metadata.yml | 259 +- data/Pirralho_2014/metadata.yml | 2 +- data/Pollock_2012/metadata.yml | 6 +- data/Pollock_2018/metadata.yml | 2 +- data/Prior_2003/metadata.yml | 10 +- data/Prior_2016/metadata.yml | 2 +- data/Prior_2022/metadata.yml | 10 +- data/Purdie_1976/metadata.yml | 56 +- data/RBGK_2014/metadata.yml | 20 +- data/RBGV_2022/metadata.yml | 185 +- data/RBGV_2023/metadata.yml | 326 +- data/Read_2003/metadata.yml | 2 +- data/Read_2005/metadata.yml | 4 +- data/Reynolds_2018/metadata.yml | 2 +- data/Rice_1991/metadata.yml | 20 +- data/Richards_2003/metadata.yml | 2 +- data/Richards_2008/metadata.yml | 6 +- data/Richards_2021/metadata.yml | 6 +- data/Roberts_2006/metadata.yml | 4 +- data/Roderick_1999/metadata.yml | 22 +- data/Roderick_2002/metadata.yml | 10 +- data/Rosell_2014/metadata.yml | 2 +- data/Rumman_2018/metadata.yml | 4 +- data/RussellSmith_2012/metadata.yml | 434 +- data/Rye_2002/metadata.yml | 4 +- data/Rye_2006/metadata.yml | 2 +- data/Rye_2009_1/metadata.yml | 2 +- data/Rye_2009_2/metadata.yml | 2 +- data/Rye_2013_1/metadata.yml | 2 +- data/Rye_2013_2/metadata.yml | 2 +- data/Rye_2015/metadata.yml | 2 +- data/SAH_2014/metadata.yml | 18 +- data/SAH_2022/metadata.yml | 508 +- data/SAH_2023/metadata.yml | 1320 ++-- data/Sams_2017/metadata.yml | 130 +- data/Santini_2012/metadata.yml | 3 +- data/Santini_2013/metadata.yml | 5 +- data/Santini_2016/metadata.yml | 12 +- data/Schmidt_1993/metadata.yml | 212 +- data/Schmidt_1997/metadata.yml | 24 +- data/Schmidt_2003/metadata.yml | 284 +- data/Schmidt_2010/metadata.yml | 16 +- data/Schulze_1998/metadata.yml | 22 +- data/Schulze_2006/metadata.yml | 38 +- data/Schulze_2006_2/metadata.yml | 36 +- data/Schulze_2014/metadata.yml | 182 +- data/Scott_2010/metadata.yml | 12 +- data/Searson_2004/metadata.yml | 2 +- data/Simpson_2021/metadata.yml | 34 +- data/SinghRamesh_2023/metadata.yml | 48 +- data/Sjostrom_2006/metadata.yml | 846 +-- data/SmithMartin_2020/metadata.yml | 2 +- data/Smith_1996/metadata.yml | 40 +- data/Smith_2012/metadata.yml | 2 +- data/Soliveres_2012/metadata.yml | 30 +- data/Soper_2014/metadata.yml | 70 +- data/Standish_2019/metadata.yml | 6 +- data/Stephens_2021/metadata.yml | 8 +- data/Stephens_2023/metadata.yml | 96 +- data/Stewart_1995/metadata.yml | 60 +- data/Sweedman_2006/metadata.yml | 261 +- data/TMAG_2009/metadata.yml | 28 +- data/Taseski_2017/metadata.yml | 4 +- data/Thomas_2017/metadata.yml | 4 +- data/Thompson_2001/metadata.yml | 2 +- data/Tng_2013/metadata.yml | 12 +- data/Toelken_1996/metadata.yml | 4 +- data/Togashi_2015/metadata.yml | 4 +- data/Tolsma_2007/metadata.yml | 6 +- data/Trudgen_2005/metadata.yml | 2 +- data/Trudgen_2014/metadata.yml | 28 +- data/Tsakalos_2020/metadata.yml | 86 +- data/Tsakalos_2022/metadata.yml | 64 +- data/Turner_2010/metadata.yml | 10 +- data/Veneklaas_2003/metadata.yml | 4 +- data/Venn_2011/metadata.yml | 14 +- data/Vesk_2004/metadata.yml | 10 +- data/Vesk_2007/metadata.yml | 8 +- data/Vesk_2019/metadata.yml | 2 +- data/Vlasveld_2018/metadata.yml | 18 +- data/WAH_1998/metadata.yml | 160 +- data/WAH_2016/metadata.yml | 2 +- data/WAH_2022_1/metadata.yml | 2222 +++---- data/WAH_2022_2/metadata.yml | 2478 ++++---- data/WAH_2023_1/metadata.yml | 2222 +++---- data/WAH_2023_2/metadata.yml | 2502 ++++---- data/Warren_2005/metadata.yml | 4 +- data/Warren_2006/metadata.yml | 6 +- data/Weerasinghe_2014/metadata.yml | 12 +- data/Wells_2012/metadata.yml | 20 +- data/Wenk_2022/metadata.yml | 1110 ++-- data/Wenk_2023/metadata.yml | 44 +- data/Wenk_2023_2/metadata.yml | 10 +- data/Westman_1977/metadata.yml | 6 +- data/Westoby_2003/metadata.yml | 6 +- data/Westoby_2004/metadata.yml | 32 +- data/Westoby_2014/metadata.yml | 8 +- data/Wheeler_2002/metadata.yml | 334 +- data/White_2020/metadata.yml | 7052 +++++++++++----------- data/Williams_2005/metadata.yml | 62 +- data/Williams_2011/metadata.yml | 230 +- data/Williams_2012/metadata.yml | 8 +- data/Wills_2018/metadata.yml | 2 +- data/Wilson_2004/metadata.yml | 6 +- data/Wilson_2008/metadata.yml | 2 +- data/Witkowski_1991/metadata.yml | 2 +- data/Wooller_2002/metadata.yml | 2 +- data/Wright_2000/metadata.yml | 524 +- data/Wright_2001/metadata.yml | 28 +- data/Wright_2002/metadata.yml | 32 +- data/Wright_2006/metadata.yml | 10 +- data/Wright_2008/metadata.yml | 20 +- data/Wright_2009/metadata.yml | 8 +- data/Wright_2019/metadata.yml | 27 +- data/Yang_2023/metadata.yml | 123 +- data/Yunusa_2010/metadata.yml | 2 +- data/Zanne_2007/metadata.yml | 10 +- data/Zanne_2009/metadata.yml | 8 +- data/Zieminska_2013/metadata.yml | 2 +- data/Zieminska_2015/metadata.yml | 2 +- data/eFLOWER_2021/metadata.yml | 4 +- data/eFLOWER_Dun_2022/metadata.yml | 2 +- data/vanderMoezel_1987/metadata.yml | 14 +- 331 files changed, 19749 insertions(+), 19563 deletions(-) diff --git a/data/ABRS_1981/metadata.yml b/data/ABRS_1981/metadata.yml index a2cc63f14..0f6ece888 100644 --- a/data/ABRS_1981/metadata.yml +++ b/data/ABRS_1981/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data$i <- seq_len(nrow(data)); data_numeric <- data %>% @@ -387,136 +387,136 @@ taxonomic_updates: replace: Adenanthos x cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos pamela replace: Adenanthos x pamela reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna generalis replace: Canna x generalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna orchiodes replace: Canna x orchiodes reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dimocarpus leichhardtii replace: Dimocarpus leichhardtii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium billardierianum subsp. hydrophilum replace: Epilobium billardiereanum subsp. hydrophilum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia vilmorinae replace: Goodenia vilmoriniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus hispanica replace: Platanus x hispanica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna alicia replace: Senna artemisioides subsp. alicia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna chatelainiana replace: Senna glutinosa subsp. chatelainiana reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna coriacea replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna filifolia replace: Senna artemisioides subsp. filifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna gawlerensis replace: Senna cardiosperma subsp. gawlerensis reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna helmsii replace: Senna artemisioides subsp. helmsii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna luerssenii replace: Senna glutinosa subsp. x luerssenii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna microphylla replace: Senna cardiosperma subsp. microphylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna oligophylla replace: Senna artemisioides subsp. oligophylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna petiolaris replace: Senna artemisioides subsp. x petiolaris reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna pruinosa replace: Senna glutinosa subsp. pruinosa reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna quadrifolia replace: Senna artemisioides subsp. quadrifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sturtii replace: Senna artemisioides subsp. x sturtii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna zygophylla replace: Senna artemisioides subsp. zygophylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sonneratia gulngai replace: Sonneratia x gulngai reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Platanus x hispanica 'Acerifolia' diff --git a/data/ABRS_2022/metadata.yml b/data/ABRS_2022/metadata.yml index 2cfced2fb..fda2bfcf8 100644 --- a/data/ABRS_2022/metadata.yml +++ b/data/ABRS_2022/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% mutate( @@ -115,34 +115,34 @@ traits: methods: unknown substitutions: .na taxonomic_updates: -- find: Anacolosa sp. - replace: Anacolosa sp. [ABRS_2022] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Adenanthos cunninghamii replace: Adenanthos x cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos pamela replace: Adenanthos x pamela reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis viridis Gouan replace: Agrostis viridis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Anacolosa sp. + replace: Anacolosa sp. [ABRS_2022] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Arctotheca calendula x populifolia replace: Arctotheca calendula x Arctotheca populifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida ramosa x vagans replace: Aristida ramosa x Aristida vagans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asplenium lobulatum Mett. ex Kuhn replace: Asplenium sp. [Asplenium lobulatum Mett. ex Kuhn; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -151,27 +151,27 @@ taxonomic_updates: - find: Blechnum pennamarina subsp. alpina replace: Blechnum penna-marina subsp. alpina reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica napus replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna generalis replace: Canna x generalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna orchiodes replace: Canna x orchiodes reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cerastium pyrenaicum J.Gay replace: Cerastium sp. [Cerastium pyrenaicum J.Gay; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -181,214 +181,214 @@ taxonomic_updates: replace: Citrus x microcarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cratystylis conocephala (F.Muell.) S.Moore x Cratystylis microphylla S.Moore replace: Cratystylis conocephala x Cratystylis microphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crepidomanes aphleboides replace: Crepidomanes aphlebioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dactyliophora novaeguineae replace: Dactyliophora novae-guineae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Davejonesia aurantiacopurpurea replace: Davejonesia aurantiacopurpureum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella caerulea var. serrulata replace: Dianella caerulea, 'serrulata' variant reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea filamentosa (S.Moore) M.Harr. replace: Dodonaea filamentosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryandra lindleyana subsp. lindleyana var. lindleyana replace: Dryandra lindleyana subsp. lindleyana reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dryandra lindleyana subsp. lindleyana var. mellicula replace: Dryandra lindleyana subsp. lindleyana reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dryopoa dives subsp. dives replace: Dryopoa dives reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus beyeri replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brachyphylla replace: Eucalyptus x brachyphylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus carnabyi replace: Eucalyptus carnei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus communalis replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus erythrandra replace: Eucalyptus erythronema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eudesmioides subsp. eudesmioides replace: Eucalyptus eudesmioides var. eudesmioides reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus eudesmioides subsp. pallida replace: Eucalyptus eudesmioides subsp. pallida (D.F.Blaxell 1981, et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus kondininensis subsp. tuberosa replace: Eucalyptus kondininensis subsp. tuberosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus lamprocalyx replace: Eucalyptus x lamprocalyx reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lanepoolei replace: Eucalyptus lane-poolei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lateritica replace: Eucalyptus x lateritica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Cockburn replace: Eucalyptus sp. Cockburn (M.I.H.Broooker 12741 & A.V.Slee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Dorsiventralis replace: Eucalyptus dorsiventralis MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Kalbarri replace: Eucalyptus sp. Kalbarri (M.I.H.Brooker 7937) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Southern Wheatbelt replace: Eucalyptus sp. Southern wheatbelt (D.Nicolle & M.French DN 5507) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Undulans replace: Eucalyptus sp. Undulans (J.R.Connors 1004 & D.Nicolle) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetragona replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus urnularis replace: Eucalyptus x urnularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia vilmorinae replace: Goodenia vilmoriniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Impatiens balfouri replace: Impatiens balfourii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lachnagrostis scabra subsp. scabra replace: Lachnagrostis scabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea terraereginae replace: Lindsaea terrae-reginae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia hemi-ptera replace: Marsdenia hemiptera reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus novae-zelandae subsp. centurionis replace: Melicytus novae-zelandiae subsp. centurionis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mesua sp. Boonjee replace: Mesua sp. (Boonjee) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monimiaceae Q3 (Mt. Hemmant) replace: Monimiaceae Q3 (Mt. Hemmant) sp. Q1 (Mt. Hemmant) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine maccomishii replace: Myrsine mccomishii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neoalsomitra sp. A ( B.Hyland 10923) replace: Neoalsomitra sp. A (B.Hyland 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oligochaetochilus macrocalymmus replace: Oligochaetochilus macrocalymma reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia polyacantha var. erinacea (Engelm. & J.M.Bigelow) B.D.Parfitt replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osteocarpum scleropterum replace: Osteocarpum x scleropterum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus solmslaubachii replace: Pandanus solms-laubachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paraprasophyllum paulineae replace: Prasophyllum paulinae reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora miniata replace: Passiflora sp. [Passiflora miniata; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -397,24 +397,24 @@ taxonomic_updates: - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus hispanica replace: Platanus x hispanica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xaenigma replace: Pterostylis x aenigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xingens replace: Pterostylis x ingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xralphcranei replace: Pterostylis x ralphcranei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quercus ilex replace: Quercus sp. [Quercus ilex; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -423,21 +423,21 @@ taxonomic_updates: - find: Rubiaceae Gen. Nov. sp. (Shute Harbour DAH Q811) replace: Gynochthodes retropila reason: Manual alignment with APC accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola revoluta subsp. revoluta var. viscida replace: Scaevola revoluta subsp. revoluta reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Selenicereus undatus replace: Selenicereus sp. [Selenicereus undatus; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -447,7 +447,7 @@ taxonomic_updates: replace: Silene flos-cuculi reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Silene gracilis DC. replace: Silene sp. [Silene gracilis DC.; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -457,7 +457,7 @@ taxonomic_updates: replace: Solanum viride reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphaerocionium replace: Sphaerocionium sp. [Sphaerocionium; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -467,94 +467,94 @@ taxonomic_updates: replace: Thelychiton x nitidus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton speciosus subsp. speciosus replace: Thelychiton speciosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xdelicatus replace: Thelychiton x delicatus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xgracillimus replace: Thelychiton x gracillimus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xruppiosus replace: Thelychiton x ruppiosus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xsuffusus replace: Thelychiton x suffusus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Albany (R.L. Barrett & K.L. Wilson RLB 5342) replace: Tricostularia sp. Albany (R.L.Barrett & K.L.Wilson RLB 5342) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Mogumber (A. Harris s.n.) replace: Tricostularia sp. Mogumber (A.Harris s.n., 23/12/2015) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Porongurup (I. Abbott 18) replace: Tricostularia sp. Porongurup (I.Abbott 18) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Two Peoples Bay (G. Wardell-Johnson GWJ 114) replace: Tricostularia sp. Two Peoples Bay (G.Wardell-Johnson GWJ 114) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena hispida Ruiz & Pav. var. hispida replace: Verbena hispida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena rigida Spreng. var. rigida replace: Verbena rigida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Cynochloris replace: x Cynochloris reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: X Cynochloris macivorii - replace: x Cynochloris macivorii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-22) - taxonomic_resolution: Species -- find: X Cynochloris reynoldensis - replace: x Cynochloris reynoldensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-22) - taxonomic_resolution: Species -- find: x Glossadenia x tutelata - replace: x Glossadenia tutelata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: Species - find: X Cynochloris replace: x Cynochloris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-23) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: X Cynochloris macivorii + replace: x Cynochloris macivorii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-22) + taxonomic_resolution: species - find: X Cynochloris macivorii replace: x Cynochloris macivorii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: X Cynochloris reynoldensis + replace: x Cynochloris reynoldensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-22) + taxonomic_resolution: species - find: X Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: x Glossadenia x tutelata + replace: x Glossadenia tutelata + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-21) + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Acacioides Group, Adenotricha Group, Aethiopicum Group, Agrifolia Group, Aspera diff --git a/data/ABRS_2023/metadata.yml b/data/ABRS_2023/metadata.yml index 4f1e023d3..12e75738e 100644 --- a/data/ABRS_2023/metadata.yml +++ b/data/ABRS_2023/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -477,319 +477,361 @@ substitutions: find: flat conduplicate involute replace: flat conduplicate involute taxonomic_updates: -- find: Anacolosa sp. - replace: Anacolosa sp. [ABRS_2023] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Adenanthos cunninghamii replace: Adenanthos x cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos pamela replace: Adenanthos x pamela reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis viridis Gouan replace: Agrostis viridis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Anacolosa sp. + replace: Anacolosa sp. [ABRS_2023] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Arctotheca calendula x populifolia replace: Arctotheca calendula x Arctotheca populifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida ramosa x vagans replace: Aristida ramosa x Aristida vagans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Banksia conferta subsp. penicillata + replace: Banksia penicillata + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Blechnum pennamarina subsp. alpina replace: Blechnum penna-marina subsp. alpina reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica napus replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna generalis replace: Canna x generalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna orchiodes replace: Canna x orchiodes reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citrus microcarpa replace: Citrus x microcarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cratystylis conocephala (F.Muell.) S.Moore x Cratystylis microphylla S.Moore replace: Cratystylis conocephala x Cratystylis microphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crepidomanes aphleboides replace: Crepidomanes aphlebioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dactyliophora novaeguineae replace: Dactyliophora novae-guineae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Davejonesia aurantiacopurpurea replace: Davejonesia aurantiacopurpureum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella caerulea var. serrulata replace: Dianella caerulea, 'serrulata' variant reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Diplodium scabrellum + replace: Diplodium scabrum + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: species +- find: Diplodium xconoglossum + replace: Pterostylis x conoglossa + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: species +- find: Diplodium xfurcillatum + replace: Pterostylis x furcillatum + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: species +- find: Diplodium xtoveyanum + replace: Pterostylis x toveyanum + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: species - find: Dodonaea filamentosa (S.Moore) M.Harr. replace: Dodonaea filamentosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryandra lindleyana subsp. lindleyana var. lindleyana replace: Dryandra lindleyana subsp. lindleyana reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dryandra lindleyana subsp. lindleyana var. mellicula replace: Dryandra lindleyana subsp. lindleyana reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dryopoa dives subsp. dives replace: Dryopoa dives reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Durabaculum discolor subsp. discolor + replace: Durabaculum discolor + reason: match_19. Automatic alignment with species-level canonical name in APNI + when notes are ignored (2023-05-24) + taxonomic_resolution: species +- find: Durabaculum xsuperbiens + replace: Durabaculum x superbiens + reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2023-05-24) + taxonomic_resolution: species - find: Eucalyptus beyeri replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brachyphylla replace: Eucalyptus x brachyphylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus carnabyi replace: Eucalyptus carnei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus communalis replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus erythrandra replace: Eucalyptus erythronema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eudesmioides subsp. eudesmioides replace: Eucalyptus eudesmioides var. eudesmioides reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus eudesmioides subsp. pallida replace: Eucalyptus eudesmioides subsp. pallida (D.F.Blaxell 1981, et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus kondininensis subsp. tuberosa replace: Eucalyptus kondininensis subsp. tuberosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus lamprocalyx replace: Eucalyptus x lamprocalyx reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lanepoolei replace: Eucalyptus lane-poolei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lateritica replace: Eucalyptus x lateritica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Cockburn replace: Eucalyptus sp. Cockburn (M.I.H.Broooker 12741 & A.V.Slee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Dorsiventralis replace: Eucalyptus dorsiventralis MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Kalbarri replace: Eucalyptus sp. Kalbarri (M.I.H.Brooker 7937) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Southern Wheatbelt replace: Eucalyptus sp. Southern wheatbelt (D.Nicolle & M.French DN 5507) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Undulans replace: Eucalyptus sp. Undulans (J.R.Connors 1004 & D.Nicolle) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetragona replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus urnularis replace: Eucalyptus x urnularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eucalyptus yumbarrana subsp. striata + replace: Eucalyptus canescens subsp. canescens x Eucalyptus vokesensis + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Goodenia vilmorinae replace: Goodenia vilmoriniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Impatiens balfouri replace: Impatiens balfourii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lachnagrostis scabra subsp. scabra replace: Lachnagrostis scabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea terraereginae replace: Lindsaea terrae-reginae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia hemi-ptera replace: Marsdenia hemiptera reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus novae-zelandae subsp. centurionis replace: Melicytus novae-zelandiae subsp. centurionis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mesua sp. Boonjee replace: Mesua sp. (Boonjee) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monimiaceae Q3 (Mt. Hemmant) replace: Monimiaceae Q3 (Mt. Hemmant) sp. Q1 (Mt. Hemmant) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine maccomishii replace: Myrsine mccomishii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neoalsomitra sp. A ( B.Hyland 10923) replace: Neoalsomitra sp. A (B.Hyland 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oligochaetochilus macrocalymmus replace: Oligochaetochilus macrocalymma reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia polyacantha var. erinacea (Engelm. & J.M.Bigelow) B.D.Parfitt replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Opuntia polyacantha var. erinacea (Engelm. & J.M.Bigelow) B.D.Parfitt + replace: Opuntia polyacantha + reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name + in `APC accepted` when everything except first 2 words ignored (2023-05-24) + taxonomic_resolution: species - find: Osteocarpum scleropterum replace: Osteocarpum x scleropterum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus solmslaubachii replace: Pandanus solms-laubachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paraprasophyllum paulineae replace: Prasophyllum paulinae reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Persoonia muelleri subsp. densifolia + replace: Persoonia muelleri var. densifolia + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus hispanica replace: Platanus x hispanica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xaenigma replace: Pterostylis x aenigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xingens replace: Pterostylis x ingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xralphcranei replace: Pterostylis x ralphcranei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubiaceae Gen. Nov. sp. (Shute Harbour DAH Q811) replace: Gynochthodes retropila reason: Manual alignment with APC accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola revoluta subsp. revoluta var. viscida replace: Scaevola revoluta subsp. revoluta reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Silene flos-cuculi (L.) Greuter & Burdet replace: Silene flos-cuculi reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum viride replace: Solanum viride reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphaerocionium replace: Sphaerocionium sp. [Sphaerocionium; FoA_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -799,148 +841,106 @@ taxonomic_updates: replace: Thelychiton x nitidus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton speciosus subsp. speciosus replace: Thelychiton speciosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xdelicatus replace: Thelychiton x delicatus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xgracillimus replace: Thelychiton x gracillimus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xruppiosus replace: Thelychiton x ruppiosus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelychiton xsuffusus replace: Thelychiton x suffusus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Albany (R.L. Barrett & K.L. Wilson RLB 5342) replace: Tricostularia sp. Albany (R.L.Barrett & K.L.Wilson RLB 5342) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Mogumber (A. Harris s.n.) replace: Tricostularia sp. Mogumber (A.Harris s.n., 23/12/2015) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Porongurup (I. Abbott 18) replace: Tricostularia sp. Porongurup (I.Abbott 18) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia sp. Two Peoples Bay (G. Wardell-Johnson GWJ 114) replace: Tricostularia sp. Two Peoples Bay (G.Wardell-Johnson GWJ 114) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Typhonium taylori + replace: Typhonium taylorii + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-24) + taxonomic_resolution: species - find: Verbena hispida Ruiz & Pav. var. hispida replace: Verbena hispida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena rigida Spreng. var. rigida replace: Verbena rigida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Wilkiea sp. B + replace: Wilkiea sp. McDowall Range (J.G.Tracey 14552) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: species - find: X Cynochloris replace: x Cynochloris reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: X Cynochloris macivorii - replace: x Cynochloris macivorii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-22) - taxonomic_resolution: Species -- find: X Cynochloris reynoldensis - replace: x Cynochloris reynoldensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-22) - taxonomic_resolution: Species -- find: x Glossadenia x tutelata - replace: x Glossadenia tutelata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: Species - find: X Cynochloris replace: x Cynochloris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-23) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: X Cynochloris macivorii + replace: x Cynochloris macivorii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-22) + taxonomic_resolution: species - find: X Cynochloris macivorii replace: x Cynochloris macivorii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: X Cynochloris reynoldensis + replace: x Cynochloris reynoldensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-22) + taxonomic_resolution: species - find: X Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species -- find: Diplodium scabrellum - replace: Diplodium scabrum - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - taxonomic_resolution: Species -- find: Diplodium xconoglossum - replace: Pterostylis x conoglossa - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - taxonomic_resolution: Species -- find: Diplodium xfurcillatum - replace: Pterostylis x furcillatum - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - taxonomic_resolution: Species -- find: Diplodium xtoveyanum - replace: Pterostylis x toveyanum - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - taxonomic_resolution: Species -- find: Durabaculum discolor subsp. discolor - replace: Durabaculum discolor - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2023-05-24) - taxonomic_resolution: Species -- find: Durabaculum xsuperbiens - replace: Durabaculum x superbiens - reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2023-05-24) - taxonomic_resolution: Species -- find: Opuntia polyacantha var. erinacea (Engelm. & J.M.Bigelow) B.D.Parfitt - replace: Opuntia polyacantha - reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name - in `APC accepted` when everything except first 2 words ignored (2023-05-24) - taxonomic_resolution: Species -- find: Typhonium taylori - replace: Typhonium taylorii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-24) - taxonomic_resolution: Species -- find: Wilkiea sp. B - replace: Wilkiea sp. McDowall Range (J.G.Tracey 14552) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: x Glossadenia x tutelata + replace: x Glossadenia tutelata + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-21) + taxonomic_resolution: species - find: xGlossadenia tutelata replace: x Phelodia tutelata reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Banksia conferta subsp. penicillata - replace: Banksia penicillata - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Eucalyptus yumbarrana subsp. striata - replace: Eucalyptus canescens subsp. canescens x Eucalyptus vokesensis - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Persoonia muelleri subsp. densifolia - replace: Persoonia muelleri var. densifolia - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Acacioides Group, Adenotricha Group, Aethiopicum Group, Agrifolia Group, Aspera diff --git a/data/ANBG_2019/metadata.yml b/data/ANBG_2019/metadata.yml index 24f153017..8f65330c5 100644 --- a/data/ANBG_2019/metadata.yml +++ b/data/ANBG_2019/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( weird_date = ifelse(str_detect(gathering_date, "^[0-9]{4}"), gathering_date, NA), @@ -14840,25 +14840,25 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia maxgrayii replace: Craspedia maxgrayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium billardieranum subsp. hydrophilum replace: Epilobium billardiereanum subsp. hydrophilum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea codonocarpa replace: Eremaea x codonocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brachyphylla replace: Eucalyptus x brachyphylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium nudifolium replace: Gastrolobium sp. [Gastrolobium nudifolium; ANBG_2019] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -14867,31 +14867,31 @@ taxonomic_updates: - find: Halgania cyanea var. tuberculosa replace: Halgania cyanea var. tuberculosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Luzula acutifolia var. acutifolia replace: Luzula acutifolia subsp. acutifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Paquerina scapigera replace: Brachyscome scapigera reason: match_20. Rewording name to be recognised as genus rank, with genus known by APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium striatellum replace: Pelargonium sp. Striatellum (G.W.Carr 10345) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile squamata var. squamata replace: Petrophile squamata subsp. squamata MS reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xerochrysum bracteatum subsp. macranthum replace: Xerochrysum bracteatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Lecanora diff --git a/data/ATRP_2020/metadata.yml b/data/ATRP_2020/metadata.yml index b4fb98dc5..cfcce5da6 100644 --- a/data/ATRP_2020/metadata.yml +++ b/data/ATRP_2020/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( plant_climbing_mechanism = ifelse(stringr::str_detect(growth_habit,"scrambling"),"scrambling", NA), @@ -173,125 +173,126 @@ taxonomic_updates: - find: Abutilon sp mataranka r m.barker 877 replace: Abutilon sp. Mataranka (R.M.Barker 877) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia sp sir charles hardy is b.hyland 25849rfk replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia sp. sir charles hardy is b.hyland 25849rfk replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea sp mt lewis b.gray 5733 replace: Antirhea sp. (Mt Lewis BG 5733) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea sp. mt lewis b.gray 5733 replace: Antirhea sp. (Mt Lewis BG 5733) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp whitsundays w j.mcdonald 5831 replace: Argyrodendron sp. Whitsundays (W.J.McDonald+ 5831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arytera sp dryander creek p r.sharpe 4184 replace: Arytera sp. Dryander Creek (P.R.Sharpe 4184) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Breynia sp black mountain b.hyland 25658rfk replace: Breynia sp. (Black Mountain BH 25658RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis sp iron range b.hyland 16395 replace: Capparis sp. Iron Range (B.Hyland 16395) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia sp kalpowar d g.fell df2769 replace: Cassia sp. Kalpowar (D.G.Fell+ DF2769) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia sp paluma range g.sankowsky 450 replace: Cassia sp. Paluma Range (G.Sankowsky+ 450) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Causonis maritima replace: Cassinia maritima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cordyline mannerssuttoniae replace: Cordyline manners-suttoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton capitisyork replace: Croton capitis-york reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus gunnii subsp. novaehollandiae replace: Cyperus gunnii subsp. novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Derris sp claudie river l j.webb 8348 replace: Derris sp. Claudie River (L.J.Webb+ 8348) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris sp daintree d e.boyland 469 replace: Derris sp. Daintree (D.E.Boyland+ 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris sp wenlock river b.hyland 21082v replace: Derris sp. (Wenlock River BH 21082V) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris sp. wenlock river b.hyland 21082v replace: Derris sp. (Wenlock River BH 21082V) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. ham hill b.hyland 2941rfk replace: Diospyros sp. (Ham Hill B.Hyland 2941RFK) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehretia sp whitfield range r.jago 17 replace: Ehretia sp. Whitfield Range (R.Jago 17) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epipremnum pinnatum cv. aureum replace: Epipremnum pinnatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum sp mosquito point j r.clarkson 9991 replace: Erythroxylum sp. Mosquito Point (J.R.Clarkson+ 9991) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flacourtia sp shiptons flat l w jessup gj.d3200 replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freycinetia sp. claudie river rt 286 replace: Freycinetia sp. (Claudie River RT 286) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia sp laura j c.tothill jt53a replace: Galactia sp. Laura (J.C.Tothill JT53A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen aq520454 sp shute harbour d a.halford q811 replace: Gen. (AQ520454) sp. Shute Harbour (D.A.Halford Q811) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossia sp green bark b.hyland 25370rfk - replace: Gossia sp. Green Bark (B.Hyland 25370RFK) - reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + replace: Gossia sp. Green Bark (B.Hyland 25370RFK) + reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, + 2023-06-16) + taxonomic_resolution: species - find: Gossia sp. green bark b.hyland 25370rfk replace: Gossia sp. Green Bark (B.Hyland 25370RFK) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes sp. iron range b.hyland 11587 replace: Gynochthodes sp. [Gynochthodes sp. iron range b.hyland 11587; ATRP_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -300,11 +301,11 @@ taxonomic_updates: - find: Homalium sp south molle island j a.gresty aq208995 replace: Homalium sp. South Molle Island (J.A.Gresty AQ208995) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea pescaprae subsp. brasiliensis replace: Ipomoea pes-caprae subsp. brasiliensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ipomoea sp. merluna b.hyland 21374v replace: Ipomoea sp. [Ipomoea sp. merluna b.hyland 21374v; ATRP_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -313,19 +314,19 @@ taxonomic_updates: - find: Lepiderema sp impulse creek a b.pollock 73 replace: Lepiderema sp. Impulse Creek (A.B.Pollock 73) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macfadyena unguiscati replace: Macfadyena unguis-cati reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Margaritaria dubiumtraceyi replace: Margaritaria dubium-traceyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medinilla ballsheadleyi replace: Medinilla balls-headleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Miconia nervosa replace: Miconia sp. [Miconia nervosa; ATRP_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -334,61 +335,62 @@ taxonomic_updates: - find: Notelaea sp elcho island c r.dunlop 7597 replace: Notelaea sp. Elcho Island (C.R.Dunlop 7597) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus solmslaubachii replace: Pandanus solms-laubachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus sp. russell river replace: Pandanus sp. (Russell River) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus novaehollandiae replace: Phyllanthus novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pongamia pinnata var. minor replace: Pongamia pinnata var. minor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Psychotria sp danbulla s t.blake 15262 replace: Psychotria sp. Danbulla (S.T.Blake 15262) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria sp mt lewis v k.moriarty 2445 replace: Psychotria sp. Mt Lewis (V.K.Moriarty 2445) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria sp shute harbour l j.webb 7916 replace: Psychotria sp. Shute Harbour (L.J.Webb+ 7916) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria sp utchee creek h.flecker ngnc5313 replace: Psychotria sp. Utchee Creek (H.Flecker NQNC5313) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia sp peninsula g.stocker 1321 replace: Randia sp. (Peninsula GS 1321) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samadera sp barong b.gray 742 replace: Samadera sp. Barong (B.Gray 742) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samadera sp tozer range l j.brass 19393 replace: Samadera sp. Tozer Range (L.J.Brass 19393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria novaehollandiae replace: Scleria novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp small flower b.gray 5657 - replace: Sida sp. Small Flower (B.Gray 5657) - reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + replace: Sida sp. Small Flower (B.Gray 5657) + reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, + 2023-06-16) + taxonomic_resolution: species - find: Smilax sp. aff. s. elliptica replace: Smilax sp. [Smilax sp. aff. s. elliptica; ATRP_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -397,36 +399,36 @@ taxonomic_updates: - find: Tasmannia sp mt bellenden ker j r.clarkson 6571 replace: Tasmannia sp. Mt Bellenden Ker (J.R.Clarkson 6571) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonius sp claudie river b.hyland 21096v replace: Timonius sp. (Claudie River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonius sp. claudie river b.hyland 21096v replace: Timonius sp. (Claudie River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tragia novaehollandiae replace: Tragia novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp station creek r j.lawn cq3284 replace: Vigna sp. Station Creek (R.J.Lawn CQ3284) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea sp mcdowall range j g.tracey 14552 replace: Wilkiea sp. McDowall Range (J.G.Tracey 14552) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp mt lewis g.sankowsky 1108 replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp temple bay p i.forster pif8980 replace: Xylosma sp. Temple Bay (P.I.Forster PIF8980) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Angevin_2011/metadata.yml b/data/Angevin_2011/metadata.yml index 67fa8fefe..299a1f2db 100644 --- a/data/Angevin_2011/metadata.yml +++ b/data/Angevin_2011/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Woohlpooer State Forest", @@ -186,78 +186,62 @@ taxonomic_updates: - find: Arthropodium sp. replace: Arthropodium sp. [Angevin_2011] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Austrodanthonia sp. + replace: Rytidosperma sp. [Angevin_2011] + reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level + alignment with `APC known` name (2022-11-10) + taxonomic_resolution: genus - find: Austrostipa sp. replace: Austrostipa sp. [Angevin_2011] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Avena sp. replace: Avena sp. [Angevin_2011] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Caladenia sp. replace: Caladenia sp. [Angevin_2011] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Geranium sp. - replace: Geranium sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Juncus sp. - replace: Juncus sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microseris sp. - replace: Microseris sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oxalis sp. - replace: Oxalis sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Poa sp. - replace: Poa sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stellaria sp. - replace: Stellaria sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trifolium sp. - replace: Trifolium sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Vulpia sp. - replace: Vulpia sp. [Angevin_2011] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Austrodanthonia sp. - replace: Rytidosperma sp. [Angevin_2011] - reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level - alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus - find: Centrolepis fasicularis replace: Centrolepis fascicularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosea aberrans replace: Drosera aberrans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Droseara peltata. subsp. peltata replace: Drosera peltata subsp. peltata reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Geranium sp. + replace: Geranium sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Gonocarpus tetragynous replace: Gonocarpus tetragynus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Juncus sp. + replace: Juncus sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Microseris sp. + replace: Microseris sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Opercularia ovaria replace: Opercularia ovata reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Oxalis sp. + replace: Oxalis sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pink orchid replace: Orchidaceae sp. [Pink orchid; Angevin_2011] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth @@ -266,27 +250,43 @@ taxonomic_updates: - find: Plantago gaudichaudiana replace: Plantago gaudichaudii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Poa sp. + replace: Poa sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ranunculus pachcarpus replace: Ranunculus pachycarpus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus apogen replace: Schoenus apogon reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Stellaria sp. + replace: Stellaria sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Thelimytra pauciflora replace: Thelymitra pauciflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne elatoir replace: Tricoryne elatior reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trifolium sp. + replace: Trifolium sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Unknown orchid replace: Orchidaceae sp. [Unknown orchid; Angevin_2011] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: family +- find: Vulpia sp. + replace: Vulpia sp. [Angevin_2011] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Apgaua_2015/metadata.yml b/data/Apgaua_2015/metadata.yml index 8dbde8c77..60cb295ed 100644 --- a/data/Apgaua_2015/metadata.yml +++ b/data/Apgaua_2015/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(vessel_diameter = 2*sqrt(`Vessel Area (um2)`/3.14159)) + custom_R_code: data %>% mutate(vessel_diameter = 2*sqrt(`Vessel Area (um2)`/3.14159)) collection_date: 2014-06/2015-03 taxon_name: Species location_name: Study site diff --git a/data/Apgaua_2017/metadata.yml b/data/Apgaua_2017/metadata.yml index e23fc7462..c2bdca254 100644 --- a/data/Apgaua_2017/metadata.yml +++ b/data/Apgaua_2017/metadata.yml @@ -294,7 +294,7 @@ traits: into AusTraits; that is, the units used are '10^6 x kg/m/s/MPa' versus 'kg/s/MPa' in the manuscript.) - var_in: Vulnerability index (unitless) - unit_in: 'um.m2/{count}' + unit_in: um.m2/{count} trait_name: stem_xylem_vulnerability_index entity_type: individual value_type: raw @@ -400,46 +400,46 @@ taxonomic_updates: - find: Ardisia brevipetala replace: Ardisia brevipedata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atractorcarpus hirtus replace: Atractocarpus hirtus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caesalpinea traceyi replace: Caesalpinia traceyi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya mackinonianna replace: Cryptocarya mackinnoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Entada phaseloides replace: Entada phaseoloides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gilbeeea whypallana replace: Gillbeea whypallana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichantus ramiflorus replace: Haplostichanthus ramiflorus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuduvaria froggatti replace: Pseuduvaria froggattii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhus taitenses replace: Rhus taitensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ryparosa kurangii replace: Ryparosa kurrangii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Atkinson_2020/metadata.yml b/data/Atkinson_2020/metadata.yml index aa4f6660a..be19f8038 100644 --- a/data/Atkinson_2020/metadata.yml +++ b/data/Atkinson_2020/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_hairs_adult = stringr::str_replace(leaf_hairs_adult, "1", "hairy"), diff --git a/data/Auld_2000/metadata.yml b/data/Auld_2000/metadata.yml index fdc7d66ad..44f023824 100644 --- a/data/Auld_2000/metadata.yml +++ b/data/Auld_2000/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `Seed weight (mg)` = stringr::str_extract(`Seed weight (mg)`, "[:digit:]+\\.[:digit:]+"), diff --git a/data/BRAIN_2007/metadata.yml b/data/BRAIN_2007/metadata.yml index ce88749c4..0b815f2eb 100644 --- a/data/BRAIN_2007/metadata.yml +++ b/data/BRAIN_2007/metadata.yml @@ -78,19 +78,19 @@ taxonomic_updates: replace: Desmodium rhytidophyllum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium rhytidophyllumsubsp. acutifoliolum replace: Desmodium rhytidophyllum subsp. acutifoliolum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ripopgonum fawcetiianum replace: Ripogonum fawcettianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus molluccanus var. trilobus replace: Rubus moluccanus var. trilobus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Baker_2019/metadata.yml b/data/Baker_2019/metadata.yml index 677a5c5e4..4c21591fe 100644 --- a/data/Baker_2019/metadata.yml +++ b/data/Baker_2019/metadata.yml @@ -287,7 +287,7 @@ taxonomic_updates: - find: Rapanea variablis replace: Rapanea variabilis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Glochidion zeylanicum diff --git a/data/Bean_1997/metadata.yml b/data/Bean_1997/metadata.yml index 3d3e77452..003342677 100644 --- a/data/Bean_1997/metadata.yml +++ b/data/Bean_1997/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/1997 taxon_name: taxon diff --git a/data/Blackman_2010/metadata.yml b/data/Blackman_2010/metadata.yml index fb94cf8a6..5c987a8a2 100644 --- a/data/Blackman_2010/metadata.yml +++ b/data/Blackman_2010/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site = ifelse(site == "Mt Field" & habitat == "Montane rainforest", "Mt Field_wet", site), site = ifelse(site == "Mt Field" & habitat == "Dry sclerophyll", "Mt Field_dry", site)) @@ -168,6 +168,6 @@ taxonomic_updates: - find: Richea scoparium replace: Richea scoparia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Bloomfield_2018/metadata.yml b/data/Bloomfield_2018/metadata.yml index 06564b2e7..cf73b42de 100644 --- a/data/Bloomfield_2018/metadata.yml +++ b/data/Bloomfield_2018/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(`Rdark.a`, ~na_if(.x, 0)), @@ -723,11 +723,11 @@ taxonomic_updates: replace: Myristica globosa subsp. muelleri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides ssp. filifolia replace: Senna artemisioides subsp. filifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Bradshaw_2022/metadata.yml b/data/Bradshaw_2022/metadata.yml index 648f9ff6b..d01c5d24d 100644 --- a/data/Bradshaw_2022/metadata.yml +++ b/data/Bradshaw_2022/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: 'data %>% mutate(Species = str_c("Eucalyptus ", Species))' + custom_R_code: 'data %>% mutate(Species = str_c("Eucalyptus ", Species))' collection_date: 2021/2021 taxon_name: Species location_name: Location @@ -172,4 +172,4 @@ substitutions: .na taxonomic_updates: .na exclude_observations: .na questions: - additional_traits: leaf length to width ratio + additional_traits: leaf length to width ratio diff --git a/data/Bragg_2002/metadata.yml b/data/Bragg_2002/metadata.yml index 10322ab90..abf854289 100644 --- a/data/Bragg_2002/metadata.yml +++ b/data/Bragg_2002/metadata.yml @@ -73,6 +73,6 @@ taxonomic_updates: - find: Lomatia siliafolia replace: Lomatia silaifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Briggs_2010/metadata.yml b/data/Briggs_2010/metadata.yml index 996a1bcb4..35c6c091e 100644 --- a/data/Briggs_2010/metadata.yml +++ b/data/Briggs_2010/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Terrick Terrick National Park") + custom_R_code: data %>% mutate(site_name = "Terrick Terrick National Park") collection_date: 2007/2007 taxon_name: Scientific Name location_name: site_name diff --git a/data/Britton_1994/metadata.yml b/data/Britton_1994/metadata.yml index ea0fb3bc2..bcb3c3dcb 100644 --- a/data/Britton_1994/metadata.yml +++ b/data/Britton_1994/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Summer_glasshouse_A = ifelse(Summer_glasshouse == "x", stringr::str_replace(Summer_glasshouse, "x", "Y"), "N"), @@ -165,58 +165,58 @@ traits: which measures radiation in the 400 to 700 nm waveband. substitutions: .na taxonomic_updates: +- find: Agrostis avenacea var avenacea + replace: Lachnagrostis filiformis + reason: Align to current APC accepted name (E. Wenk, 2023-05-29) + taxonomic_resolution: species +- find: Agrostis avenacea var avenacea + replace: Lachnagrostis filiformis + reason: Align to current APC accepted name (E. Wenk, 2023-05-29) + taxonomic_resolution: species +- find: Amphibromus sp. + replace: Amphibromus sp. [Amphibromus sp.; Britton_1994] + reason: Reformat genus-level name (E. Wenk, 2023-05-29) + taxonomic_resolution: genus +- find: Carex sp. + replace: Carex sp. [Carex sp.; Britton_1994] + reason: Reformat genus-level name (E. Wenk, 2023-05-29) + taxonomic_resolution: genus - find: Conyza sp. replace: Erigeron sp. [Conyza sp.; Britton_1994] reason: Align with current genus name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Trifolium spp. - replace: Trifolium sp. [Trifolium spp.; Britton_1994] - reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Juncus sp. - replace: Juncus sp. [Juncus sp.; Britton_1994] - reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Isolepis sp. - replace: Isolepis sp. [Isolepis sp.; Britton_1994] + taxonomic_resolution: genus +- find: Cyperus sp. + replace: Cyperus sp. [Cyperus sp.; Britton_1994] reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Geranium sp. replace: Geranium sp. [Geranium sp.; Britton_1994] reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Gnaphalium sp. replace: Gnaphalium sp. [Gnaphalium sp.; Britton_1994] reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Cyperus sp. - replace: Cyperus sp. [Cyperus sp.; Britton_1994] - reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Carex sp. - replace: Carex sp. [Carex sp.; Britton_1994] + taxonomic_resolution: genus +- find: Isolepis sp. + replace: Isolepis sp. [Isolepis sp.; Britton_1994] reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Amphibromus sp. - replace: Amphibromus sp. [Amphibromus sp.; Britton_1994] + taxonomic_resolution: genus +- find: Juncus sp. + replace: Juncus sp. [Juncus sp.; Britton_1994] reason: Reformat genus-level name (E. Wenk, 2023-05-29) - taxonomic_resolution: Genus -- find: Agrostis avenacea var avenacea - replace: Lachnagrostis filiformis - reason: Align to current APC accepted name (E. Wenk, 2023-05-29) - taxonomic_resolution: Species -- find: Agrostis avenacea var avenacea - replace: Lachnagrostis filiformis - reason: Align to current APC accepted name (E. Wenk, 2023-05-29) - taxonomic_resolution: Species + taxonomic_resolution: genus - find: Polygonum arviculare replace: Polygonum aviculare reason: Align to current APC accepted name (E. Wenk, 2023-05-29) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trifolium spp. + replace: Trifolium sp. [Trifolium spp.; Britton_1994] + reason: Reformat genus-level name (E. Wenk, 2023-05-29) + taxonomic_resolution: genus - find: Vallisneria gigantea replace: Vallisneria australis reason: Align to current APC accepted name (E. Wenk, 2023-05-29) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Nitella spp., Chara spp. diff --git a/data/Brock_1993/metadata.yml b/data/Brock_1993/metadata.yml index 77dc0efc8..99a4a9167 100644 --- a/data/Brock_1993/metadata.yml +++ b/data/Brock_1993/metadata.yml @@ -18,7 +18,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( parasitic = ifelse(`growth form` == "parasite", "parasitic", NA), @@ -250,59 +250,59 @@ taxonomic_updates: - find: Amyena sanguineum replace: Amyema sanguinea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyena thalassium replace: Amyema thalassia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bauhinia binatum replace: Bauhinia binata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bucchanania arborescens replace: Buchanania arborescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bucchanania obovata replace: Buchanania obovata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotolaria novae-hollandiae replace: Crotalaria novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum elliipticum replace: Erythroxylum ellipticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Exocarpus latifolius replace: Exocarpos latifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea orientalis replace: Grevillea occidentalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Horsfeldia australiana replace: Horsfieldia australiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus philippinensis replace: Mallotus philippensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca viridifolia replace: Melaleuca viridiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia fulva replace: Utricularia fulva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia odorata replace: Utricularia odorata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Aglaia rufa diff --git a/data/Brodribb_2000/metadata.yml b/data/Brodribb_2000/metadata.yml index eb7e2ecf1..e7084cd74 100644 --- a/data/Brodribb_2000/metadata.yml +++ b/data/Brodribb_2000/metadata.yml @@ -178,10 +178,10 @@ taxonomic_updates: - find: Richea scoparium replace: Richea scoparia reason: Manual alignment with APC accepted name. (E. Wenk, 2023-06-07) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Toona australis replace: Toona ciliata reason: Manual alignment with APC accepted name. (E. Wenk, 2023-06-07) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Buckton_2019/metadata.yml b/data/Buckton_2019/metadata.yml index 21e9ada14..5edf18bae 100644 --- a/data/Buckton_2019/metadata.yml +++ b/data/Buckton_2019/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Cape Tribulation", @@ -675,7 +675,7 @@ taxonomic_updates: - find: Agyrodendron peralatum replace: Argyrodendron peralatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calamus sp replace: Calamus sp. [Buckton_2019] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -684,19 +684,19 @@ taxonomic_updates: - find: Cardwelia sublimis replace: Cardwellia sublimis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra microneuria replace: Endiandra microneura reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myristica globossa muelleri replace: Myristica globosa subsp. muelleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Parsonia latifolia replace: Parsonsia latifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: UNK K, UNK L, UNK D, UNK E diff --git a/data/Burrows_2001/metadata.yml b/data/Burrows_2001/metadata.yml index e71f190a8..abc1d8d39 100644 --- a/data/Burrows_2001/metadata.yml +++ b/data/Burrows_2001/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(everything(), ~as.character(.x)), @@ -206,15 +206,15 @@ taxonomic_updates: - find: Ameyma miquelii replace: Amyema miquelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonea viscosa subsp. cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Zieria cystisoides replace: Zieria cytisoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: detailed anatomy of photosynthetic organs. diff --git a/data/Burrows_2008/metadata.yml b/data/Burrows_2008/metadata.yml index 3d3de4ac7..2f5da89f7 100644 --- a/data/Burrows_2008/metadata.yml +++ b/data/Burrows_2008/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(time_to_flowering_type = fire_response) ' @@ -167,7 +167,7 @@ traits: as obligate seeders occassionally resprout after low intensity fire, which were classified as obligate seeders. - var_in: reproductive_maturity - unit_in: 'a' + unit_in: a trait_name: reproductive_maturity entity_type: population value_type: median @@ -180,7 +180,7 @@ traits: in a population to reach flowering age after fire. This was assessed visually. measurement_remarks: reproductive_maturity_notes - var_in: fire_time_from_fire_to_50_percent_flowering - unit_in: 'a' + unit_in: a trait_name: fire_time_from_fire_to_50_percent_flowering entity_type: population value_type: median @@ -213,11 +213,11 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank taxonomic_updates: - find: Lasiopetalum floribunda replace: Lasiopetalum floribundum reason: Manual alignment to APC accepted spelling (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Burrows_2020/metadata.yml b/data/Burrows_2020/metadata.yml index 97eb224cd..c1e00b7a5 100644 --- a/data/Burrows_2020/metadata.yml +++ b/data/Burrows_2020/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Western Australia", @@ -270,38 +270,38 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank taxonomic_updates: - find: Apium prostratum subsp. prostratum var. prostratum replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-08) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Boronia crenulata subsp. crenulata var. crenulata replace: Boronia crenulata var. crenulata reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-08) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus tetragona replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudoloxocarya grossa replace: Pseudoloxocarya grossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pseudoloxocarya grossa MS + replace: Taraxis grossa + reason: Manual alignment with accepted APC name (E. Wenk, 2023-05-08) + taxonomic_resolution: species - find: Rumex acetosa replace: Rumex acetosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium brunonianum var. brunonianum replace: Stylidium brunonianum reason: Manual alignment with accepted APC name (E. Wenk, 2023-05-08) - taxonomic_resolution: Species -- find: Pseudoloxocarya grossa MS - replace: Taraxis grossa - reason: Manual alignment with accepted APC name (E. Wenk, 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/CPBR_2002/metadata.yml b/data/CPBR_2002/metadata.yml index b003fb2ec..fcfd7ef66 100644 --- a/data/CPBR_2002/metadata.yml +++ b/data/CPBR_2002/metadata.yml @@ -133,105 +133,105 @@ taxonomic_updates: replace: Corymbia peltata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanites replace: Eucalyptus x balanites reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanopelex replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus beyeri replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brachyphylla replace: Eucalyptus x brachyphylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus carnabyi replace: Eucalyptus carnei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus communalis replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus erythrandra replace: Eucalyptus erythronema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eudesmioides subsp. eudesmioides replace: Eucalyptus eudesmioides var. eudesmioides reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus eudesmioides subsp. pallida replace: Eucalyptus eudesmioides subsp. pallida (D.F.Blaxell 1981, et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus eudesmioides subsp. selachiana replace: Eucalyptus eudesmioides subsp. Selachiana (M.I.H.Brooker 8129) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus kondininensis subsp. tuberosa replace: Eucalyptus kondininensis subsp. tuberosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus lanepoolei replace: Eucalyptus lane-poolei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lateritica replace: Eucalyptus x lateritica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus missilis x replace: Eucalyptus x missilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus phylacis replace: Eucalyptus x phylacis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Cockburn replace: Eucalyptus sp. Cockburn (M.I.H.Broooker 12741 & A.V.Slee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Dorsiventralis replace: Eucalyptus dorsiventralis MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Flinders Ranges replace: Eucalyptus 'Flinders Ranges' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Kalbarri replace: Eucalyptus sp. Kalbarri (M.I.H.Brooker 7937) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Triangolensis replace: Eucalyptus triangolensis MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Undulans replace: Eucalyptus sp. Undulans (J.R.Connors 1004 & D.Nicolle) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Caldwell_2016/metadata.yml b/data/Caldwell_2016/metadata.yml index 2b4d7ba25..3600be4df 100644 --- a/data/Caldwell_2016/metadata.yml +++ b/data/Caldwell_2016/metadata.yml @@ -169,7 +169,7 @@ taxonomic_updates: - find: Grevillea barkleyana replace: Grevillea barklyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf mechanical traits, additional chemical data, to be provided diff --git a/data/Campbell_2006/metadata.yml b/data/Campbell_2006/metadata.yml index 207700a20..bb1c8329a 100644 --- a/data/Campbell_2006/metadata.yml +++ b/data/Campbell_2006/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: data %>% mutate(resprouting_capacity = `Fire Response`) + custom_R_code: data %>% mutate(resprouting_capacity = `Fire Response`) collection_date: 2002/2006 taxon_name: Species location_name: Site @@ -320,45 +320,45 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank taxonomic_updates: - find: Acacia ulicifolia* replace: Acacia ulicifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia spinulosa* replace: Banksia spinulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia celestroides replace: Denhamia celastroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea megazyga* replace: Dodonaea megazyga reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Omalanthus nitens* replace: Omalanthus nutans reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia rubescens* replace: Rhodamnia rubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf type, mesophyll vs sclerophyll vs coriaceous diff --git a/data/Canham_2023/metadata.yml b/data/Canham_2023/metadata.yml index b5e126b8f..14d71e172 100644 --- a/data/Canham_2023/metadata.yml +++ b/data/Canham_2023/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Fitzroy Crossing", @@ -289,8 +289,8 @@ traits: plant water availability (using predawn plant water potential; PsiPD), the elevation of trees in the landscape and the duration of flood inundation. Plant water potential at predawn is widely used as a surrogate for soil water status (Ritchie & Hinckley, - 1975). PsiPD was measured at predawn (between 03:30 and 06:00 h in June 2019) for - five replicate terminal shoots for each species using a Scholander-type pressure + 1975). PsiPD was measured at predawn (between 03:30 and 06:00 h in June 2019) + for five replicate terminal shoots for each species using a Scholander-type pressure chamber (PMS Instruments Model 1000 Pressure Chamber Instrument, Albany, OR, USA). - var_in: leaf_phenology unit_in: .na diff --git a/data/Catford_2014/metadata.yml b/data/Catford_2014/metadata.yml index 53b99e4ee..18bd948c7 100644 --- a/data/Catford_2014/metadata.yml +++ b/data/Catford_2014/metadata.yml @@ -34,7 +34,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(Taxa = str_replace(Taxa,"Austrodanthonia","Rytidosperma")) + custom_R_code: data %>% mutate(Taxa = str_replace(Taxa,"Austrodanthonia","Rytidosperma")) %>% mutate(site_name = "Yarrawonga") %>% mutate(str_replace(Taxa,"Austrodanthonia","Rytidosperma")) %>% mutate(across(c("Plant height max (m)","plant height min (m)","Leaf size (cm^2)"), ~na_if(.x,0))) %>% replace_na(list(Tree = 0, Gram = 0, Forb=0, Annual=0, Biennial=0, @@ -395,7 +395,7 @@ taxonomic_updates: - find: Acaena xanserovina replace: Acaena x anserovina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranth sp1 replace: Amaranthus sp. [Amaranth sp1; Catford_2014] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) @@ -403,31 +403,31 @@ taxonomic_updates: - find: Anthoxanthum odaratum replace: Anthoxanthum odoratum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Avena sativa cf replace: Avena sativa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cuscuta campestris cf replace: Cuscuta campestris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus dactylon replace: Cyperus dactylotes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus exaltatus cf replace: Cyperus exaltatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus fulvus cf replace: Cyperus fulvus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp1 replace: Cyperus sp. [Cyperus sp1; Catford_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -441,35 +441,35 @@ taxonomic_updates: - find: Dip_uni replace: Diplachne uninervia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania littoralis cf replace: Dysphania littoralis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echnochloa crus-galli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium sp1 replace: Epipogium sp. [Epilobium sp1; Catford_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eragrostis sp1 replace: Eragrostis sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium sp1 replace: Geranium sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma fluviatalis subsp. australis replace: Isotoma fluviatilis subsp. australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Juncus sp1 replace: Juncus sp. [Juncus sp1; Catford_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -479,11 +479,11 @@ taxonomic_updates: replace: Ludwigia peploides subsp. montevidensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mentha sp1 replace: Mentha sp. 1 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oplismenus sp1 cf (O. aemulus) replace: Oplismenus sp. [Oplismenus sp1 cf (O. aemulus); Catford_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -492,29 +492,29 @@ taxonomic_updates: - find: Panicum effersum replace: Panicum effusum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persicara hydropiper replace: Persicaria hydropiper reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potamogeton sulcaltus replace: Potamogeton sulcatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prunus cerasifera cv. atropurpea replace: Prunus cerasifera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus fruticosus agg. replace: Rubus fruticosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex acetoselin replace: Rumex acetosella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex sp1 replace: Rumex sp. [Rumex sp1; Catford_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -569,7 +569,7 @@ taxonomic_updates: replace: Senecio tenuiflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Setaria sp1 replace: Setaria sp. [Setaria sp1; Catford_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -578,15 +578,15 @@ taxonomic_updates: - find: Sonchus olearaceus replace: Sonchus oleraceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stellaria sp1 replace: Stellaria sp. 1 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena banariensis replace: Verbena bonariensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Ricciocarpus natans diff --git a/data/Cernusak_2006/metadata.yml b/data/Cernusak_2006/metadata.yml index 871a17fd3..3577a030e 100644 --- a/data/Cernusak_2006/metadata.yml +++ b/data/Cernusak_2006/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Howard River catchment", diff --git a/data/Cernusak_2011/metadata.yml b/data/Cernusak_2011/metadata.yml index f4dba10ef..2e5c3ae86 100644 --- a/data/Cernusak_2011/metadata.yml +++ b/data/Cernusak_2011/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Date = Date %>% dmy(), @@ -688,10 +688,10 @@ taxonomic_updates: - find: Eucalyptus coolibah replace: Eucalyptus coolabah reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetrodonta (TR) replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Chandler_2002/metadata.yml b/data/Chandler_2002/metadata.yml index 0aee8f06d..01a8b591c 100644 --- a/data/Chandler_2002/metadata.yml +++ b/data/Chandler_2002/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( flowering_time = ifelse(is.na(data$`flowering month begin`), NA, diff --git a/data/Cheal_2017/metadata.yml b/data/Cheal_2017/metadata.yml index a91bfcc4a..9e140bb68 100644 --- a/data/Cheal_2017/metadata.yml +++ b/data/Cheal_2017/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( resprouting_capacity_juvenile = `PERVEG V, U, W, N, X (F=inadequate data)`, @@ -208,7 +208,8 @@ traits: methods: compilation from diverse sources and expert opinion; this trait collapses the data recorded under "PERVEG" (perennial vegetation) into the binary "fire-killed" vs "resprouts". More detailed information on plant fire response that is coded - in "PERVEG" is now included under `resprouting_capacity_juvenile`. How a fire affects the "maturity status" of a plant is not mapped into AusTraits. + in "PERVEG" is now included under `resprouting_capacity_juvenile`. How a fire + affects the "maturity status" of a plant is not mapped into AusTraits. - var_in: T, I, R, M, K (F=inadequate data) unit_in: .na trait_name: seedling_establishment_conditions @@ -446,12 +447,12 @@ taxonomic_updates: replace: Acacia longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis aff. hiemalis replace: Agrostis sp. [Agrostis aff. hiemalis; Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -466,27 +467,27 @@ taxonomic_updates: replace: Allocasuarina pusilla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema pendula subsp. pendula (s.s.) replace: Amyema pendula subsp. pendula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Arthropodium milleflorum s.l. replace: Arthropodium milleflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium milleflorum s.s. replace: Arthropodium milleflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. 1 (robust glaucous) replace: Arthropodium sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. 3 (aff. strictum) replace: Arthropodium sp. [Arthropodium sp. 3 (aff. strictum); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -496,12 +497,12 @@ taxonomic_updates: replace: Brachyscome aff. formosa 'entity 2' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bromus catharticus var. catharticus replace: Bromus catharticus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia aff. catenata (South Gippsland) replace: Caladenia sp. [Caladenia aff. catenata (South Gippsland); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -521,12 +522,12 @@ taxonomic_updates: replace: Caladenia carnea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia carnea sensu Willis (1970) replace: Caladenia carnea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. aff. fragrantissima (Central Victoria) replace: Caladenia sp. [Caladenia sp. aff. fragrantissima (Central Victoria); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -536,7 +537,7 @@ taxonomic_updates: replace: Caladenia testacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloglottis aff. valida (Alpine) replace: Chiloglottis sp. [Chiloglottis aff. valida (Alpine); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -551,12 +552,12 @@ taxonomic_updates: replace: Commersonia breviseta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus erubescens spp. agg. replace: Convolvulus erubescens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas sp. aff. diemenicus (Wilsons Promontory) replace: Corybas sp. [Corybas sp. aff. diemenicus (Wilsons Promontory); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -566,32 +567,32 @@ taxonomic_updates: replace: Craspedia glauca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella longifolia var. longifolia s.l. replace: Dianella longifolia var. longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dianella revoluta s.l. replace: Dianella revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella revoluta var. revoluta s.l. replace: Dianella revoluta var. revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dianella tasmanica s.l. replace: Dianella tasmanica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichelachne sciurea spp. agg. replace: Dichelachne sciurea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris aff. pardina (Western Goldfields) replace: Diuris sp. [Diuris aff. pardina (Western Goldfields); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -601,91 +602,91 @@ taxonomic_updates: replace: Diuris lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris pedunculata s.s. replace: Diuris pedunculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera peltata s.l. replace: Drosera peltata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus odorata s.l. replace: Eucalyptus odorata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus radiata s.l. replace: Eucalyptus radiata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hordeum murinum s.l. replace: Hordeum murinum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea ericoides spp. agg. replace: Kunzea ericoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucochrysum albicans subsp. albicans var. albicans replace: Leucochrysum albicans var. albicans reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Leucochrysum albicans subsp. albicans var. tricolor replace: Leucochrysum albicans subsp. tricolor reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucopogon lanceolatus var. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha satureoides replace: Mentha satureioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microseris scapigera spp. agg. replace: Microseris scapigera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pinus radiata var. binata replace: Pinus radiata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pinus radiata var. radiata replace: Pinus radiata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis jaceoides s.l. replace: Podolepis jaceoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis jaceoides s.s. replace: Podolepis jaceoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potamogeton tricarinatus s.l. replace: Potamogeton tricarinatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum aff. frenchii (Wilsons Promontory) replace: Prasophyllum sp. [Prasophyllum aff. frenchii (Wilsons Promontory); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -715,32 +716,32 @@ taxonomic_updates: replace: Prasophyllum alpinum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum odoratum s.l. replace: Prasophyllum odoratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum patens s.l. replace: Prasophyllum patens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum pyriforme s.l. replace: Prasophyllum pyriforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum pyriforme s.s. replace: Prasophyllum pyriforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum suttonii s.s. replace: Prasophyllum suttonii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis aff. aciculiformis (Beechworth) replace: Pterostylis sp. [Pterostylis aff. aciculiformis (Beechworth); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -755,52 +756,52 @@ taxonomic_updates: replace: Pterostylis alata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis alpina s.l. replace: Pterostylis alpina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis alpina s.s. replace: Pterostylis alpina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis biseta s.l. replace: Pterostylis biseta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis cucullata (coastal form) replace: Pterostylis cucullata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis cucullata (montane form) replace: Pterostylis cucullata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis falcata s.l. replace: Pterostylis falcata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis falcata s.s. replace: Pterostylis falcata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis longifolia s.l. replace: Pterostylis longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis plumosa s.l. replace: Pterostylis plumosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. aff. boormanii (Beechworth) replace: Pterostylis sp. [Pterostylis sp. aff. boormanii (Beechworth); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -815,34 +816,44 @@ taxonomic_updates: replace: Rubus fruticosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma caespitosa replace: Rytidosperma caespitosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma carphoidesum replace: Rytidosperma carphoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma setaceium replace: Rytidosperma setaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha (erect shrubby form) replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha (prostrate herbaceous form) replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taraxacum officinale spp. agg. replace: Taraxacum officinale reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelymitra X truncata complex + replace: Thelymitra x [Thelymitra X truncata complex; Cheal_2017] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus +- find: Thelymitra X truncata s.s. + replace: Thelymitra x truncata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species - find: Thelymitra aff. ixioides (Western Victoria) replace: Thelymitra sp. [Thelymitra aff. ixioides (Western Victoria); Cheal_2017] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -862,60 +873,50 @@ taxonomic_updates: replace: Thelymitra ixioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra ixioides s.s. replace: Thelymitra ixioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra media s.l. replace: Thelymitra media reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra media s.s. replace: Thelymitra media reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra nuda-pauciflora complex replace: Thelymitra sp. [Thelymitra nuda - Thelymitra pauciflora complex; Cheal_2017] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus -- find: Thelymitra X truncata complex - replace: Thelymitra x [Thelymitra X truncata complex; Cheal_2017] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Thelymitra X truncata s.s. - replace: Thelymitra x truncata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species - find: Viola hederacea sensu Willis (1972) replace: Viola hederacea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola sieberiana spp. agg. replace: Viola sieberiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia dissecta s.s. replace: Vittadinia dissecta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Walwalleya proluta replace: Walwhalleya proluta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum leucopsideum replace: Helichrysum leucopsideum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Sphagnum subsecundum, Sphagnum cristatum diff --git a/data/Cheesman_2020/metadata.yml b/data/Cheesman_2020/metadata.yml index aceb7f5bf..696de1754 100644 --- a/data/Cheesman_2020/metadata.yml +++ b/data/Cheesman_2020/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Treatment = ifelse(is.na(Treatment),"before treatment", Treatment), @@ -359,11 +359,11 @@ taxonomic_updates: - find: Calamus radicaulis replace: Calamus radicalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium hemilampra replace: Syzygium hemilamprum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: epidermal cell area, undulation index, petiole length, petiole diff --git a/data/Chen_2017/metadata.yml b/data/Chen_2017/metadata.yml index 52162cf03..17a730c8d 100644 --- a/data/Chen_2017/metadata.yml +++ b/data/Chen_2017/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( flowering_time = format_flowering_months(flowering_time_start, @@ -268,102 +268,102 @@ taxonomic_updates: - find: Dactyliophora novaeguineae replace: Dactyliophora novae-guineae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia vilmorinae replace: Goodenia vilmoriniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platycapnos spicata replace: Platycapnos spicatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna alicia replace: Senna artemisioides subsp. alicia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna chatelainiana replace: Senna glutinosa subsp. chatelainiana reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna coriacea replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna filifolia replace: Senna artemisioides subsp. filifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna form replace: Senna sp. [Senna form; Chen_2017] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Senna gawlerensis replace: Senna cardiosperma subsp. gawlerensis reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna helmsii replace: Senna artemisioides subsp. helmsii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna luerssenii replace: Senna glutinosa subsp. x luerssenii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna microphylla replace: Senna cardiosperma subsp. microphylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna oligophylla replace: Senna artemisioides subsp. oligophylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna pruinosa replace: Senna glutinosa subsp. pruinosa reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna quadrifolia replace: Senna artemisioides subsp. quadrifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sturtii replace: Senna artemisioides subsp. x sturtii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna zygophylla replace: Senna artemisioides subsp. zygophylla reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: contributor: Proteaceae have among the shortest fruit lengths in this study - that diff --git a/data/Chinnock_2007/metadata.yml b/data/Chinnock_2007/metadata.yml index 1547854ae..76b417d2e 100644 --- a/data/Chinnock_2007/metadata.yml +++ b/data/Chinnock_2007/metadata.yml @@ -218,38 +218,38 @@ taxonomic_updates: - find: Eremophila caniculata replace: Eremophila canaliculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila compresa replace: Eremophila compressa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila erioclayx replace: Eremophila eriocalyx reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila lehamnniana replace: Eremophila lehmanniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila macgillivrayii replace: Eremophila macgillivrayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila parviflora replace: Eremophila parvifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila pergalndulosa replace: Eremophila perglandulosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila retrophila replace: Eremophila petrophila reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myoporum batae replace: Myoporum bateae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Choat_2006/metadata.yml b/data/Choat_2006/metadata.yml index 34f845706..8037d3501 100644 --- a/data/Choat_2006/metadata.yml +++ b/data/Choat_2006/metadata.yml @@ -35,7 +35,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species, Plant) %>% mutate( @@ -584,6 +584,6 @@ taxonomic_updates: - find: Cochlospermom gillivraei replace: Cochlospermum gillivraei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Clarke_2009/metadata.yml b/data/Clarke_2009/metadata.yml index 40839e232..47519a10c 100644 --- a/data/Clarke_2009/metadata.yml +++ b/data/Clarke_2009/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( RO = stringr::str_extract(Habitats,"RO"), @@ -349,124 +349,129 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank taxonomic_updates: - find: Acacia venulosa (obligate seeding pop.) replace: Acacia venulosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina littoralis (Swamp form) replace: Allocasuarina littoralis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anopteris macleayanus replace: Anopterus macleayanus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus ericiodes replace: Aotus ericoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asterolasia asteroscophora subsp. asteroscophora replace: Asterolasia asteriscophora subsp. asteriscophora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia spinulosa subsp. collina replace: Banksia spinulosa var. collina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia spinulosa subsp. neoanglica replace: Banksia spinulosa var. neoanglica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Boronia anemonifolia subsp. variablis replace: Boronia anemonifolia subsp. variabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Boronia bolivensis replace: Boronia boliviensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea neo-anglica replace: Bossiaea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum burgessiorium replace: Conospermum burgessiorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa reflexa (obligate seeder red flowered) replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa reflexa (resprouter green flowered) replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crowea exaltata subsp. magnifolia replace: Crowea exalata subsp. magnifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cryptandra amara var. longfolia replace: Cryptandra amara var. longiflora reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Davesia villifera replace: Daviesia villifera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa subsp. Black Fruits replace: Dodonaea viscosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris microphylla = gunnii replace: Epacris microphylla var. gunnii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Gietonoplesium cymosum replace: Geitonoplesium cymosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium heugelii replace: Gompholobium huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium inconspicum replace: Gompholobium inconspicuum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea guthrienana replace: Grevillea guthrieana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea scotechenii subsp. sarmentosa replace: Grevillea scortechinii subsp. sarmentosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hardenbergia violacea (obligate seeder pop.) replace: Hardenbergia violacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia riparia (Gibraltar Range form) replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia riparia (Grassy woodlands form) replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hibbertia sp. B sens. Fl. Nsw + replace: Hibbertia sp. B + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Hibbertia sp. aff. obtusifolia replace: Hibbertia sp. [Hibbertia sp. aff. obtusifolia; Clarke_2009] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -477,30 +482,25 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus -- find: Hibbertia sp. B sens. Fl. Nsw - replace: Hibbertia sp. B - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species - find: Kunzea bracteolata (obligate seeder pop.) replace: Kunzea bracteolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea bracteolata (resprouter pop.) replace: Kunzea bracteolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon neo-anglicus replace: Leucopogon neoanglicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. aff. apressus replace: Leucopogon sp. [Leucopogon sp. aff. apressus; Clarke_2009] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -514,7 +514,7 @@ taxonomic_updates: - find: Lezpedeza juncea subsp. sericea replace: Lespedeza juncea subsp. sericea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Logania sp. aff. albiflora (narrow leaves, rocky habitat) replace: Logania sp. [Logania sp. aff. albiflora (narrow leaves, rocky habitat); Clarke_2009] @@ -524,7 +524,7 @@ taxonomic_updates: - find: Maytenis bilocularis replace: Maytenus bilocularis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. aff. comboynensis ('Big Red') replace: Melaleuca sp. [Melaleuca sp. aff. comboynensis ('Big Red'); Clarke_2009] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -539,11 +539,11 @@ taxonomic_updates: replace: Melaleuca sp. nov. reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea microcarpa var. microcrpa replace: Notelaea microcarpa var. microcarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Olearia sp. aff. elliptica replace: Olearia sp. [Olearia sp. aff. elliptica; Clarke_2009] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -553,22 +553,22 @@ taxonomic_updates: replace: Oxylobium arborescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxylobium arborescens (Tall form) replace: Oxylobium arborescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus obcordatus (obligate seeding pops.) replace: Ozothamnus obcordatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus obcordatus (resprouting pops.) replace: Ozothamnus obcordatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus sp. 'Basket swamp' replace: Ozothamnus sp. [Ozothamnus sp. 'Basket swamp'; Clarke_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -582,7 +582,7 @@ taxonomic_updates: - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. 'Long Point' replace: Pimelea sp. [Pimelea sp. 'Long Point'; Clarke_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -591,12 +591,12 @@ taxonomic_updates: - find: Platysace ericiodes replace: Platysace ericoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias sambucifolia subsp. A (sens. Fl. NSW) replace: Polyscias sambucifolia subsp. A reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderiris (long Point small leaf) replace: Pomaderris sp. [Pomaderiris (long Point small leaf); Clarke_2009] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) @@ -605,17 +605,17 @@ taxonomic_updates: replace: Prostanthera ovalifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera scutellarioides (Carrai form) replace: Prostanthera scutellarioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera scutellarioides (Gibraltar Range form) replace: Prostanthera scutellarioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. aff. howelliae replace: Prostanthera sp. [Prostanthera sp. aff. howelliae; Clarke_2009] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -624,7 +624,7 @@ taxonomic_updates: - find: Pultanaea tarik replace: Pultenaea tarik reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Girraween replace: Pultenaea sp. [Pultenaea sp. Girraween; Clarke_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -633,19 +633,19 @@ taxonomic_updates: - find: Quintinia seiberi replace: Quintinia sieberi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus mooreii replace: Rubus moorei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum prinophylllum replace: Solanum prinophyllum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea heugeliana replace: Wilkiea hugeliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea sp. Gibraltar Range replace: Xanthorrhoea sp. [Xanthorrhoea sp. Gibraltar Range; Clarke_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/Clarke_2015/metadata.yml b/data/Clarke_2015/metadata.yml index b25147ed6..54a84f6f2 100644 --- a/data/Clarke_2015/metadata.yml +++ b/data/Clarke_2015/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `species records` = str_replace_all(`species records`, "_", " "), @@ -250,173 +250,29 @@ substitutions: find: 'yes' replace: post_fire_recruitment taxonomic_updates: -- find: Acacia sp. - replace: Acacia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Astroloma sp. - replace: Astroloma sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Baeckea sp. - replace: Baeckea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brachychiton sp. - replace: Brachychiton sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calothamnus sp. - replace: Calothamnus sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calytrix sp. - replace: Calytrix sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cassinia sp. - replace: Cassinia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cassytha sp. - replace: Cassytha sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Celastrus sp. - replace: Celastrus sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: 'Chenopodium sp. ' - replace: Chenopodium sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corymbia sp. - replace: Corymbia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Desmodium sp. - replace: Desmodium sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dillwynia sp. - replace: Dillwynia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dodonaea sp. - replace: Dodonaea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Einadia sp. - replace: Einadia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eremaea sp. - replace: Eremaea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eucalyptus sp. - replace: Eucalyptus sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eutaxia sp. - replace: Eutaxia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gardenia sp. - replace: Gardenia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gompholobium sp. - replace: Gompholobium sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hibiscus sp. - replace: Hibiscus sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hypocalymma sp. - replace: Hypocalymma sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Kunzea sp - replace: Kunzea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptospermum sp. - replace: Leptospermum sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leucopogon sp. - replace: Leucopogon sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Melaleuca sp. - replace: Melaleuca sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Parsonsia sp. - replace: Parsonsia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pimelea sp. - replace: Pimelea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pomaderris sp. - replace: Pomaderris sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Psydrax sp. - replace: Psydrax sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pultenaea sp. - replace: Pultenaea sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rubus sp. - replace: Rubus sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scholtzia sp. - replace: Scholtzia sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sida sp. - replace: Sida sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Syzygium sp. - replace: Syzygium sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tarenna sp. - replace: Tarenna sp. [Clarke_2015] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Abutilon oxycarpum f. oxycarpum replace: Abutilon oxycarpum var. oxycarpum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Abutilon oxycarpum forma oxycarpum replace: Abutilon oxycarpum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia deanii replace: Acacia deanei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia deanii ssp deanii replace: Acacia deanei subsp. deanei reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia holocersea replace: Acacia holosericea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia irrorata x parvipinnula replace: Acacia x [Acacia irrorata x parvipinnula; Clarke_2015] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -426,64 +282,68 @@ taxonomic_updates: replace: Acacia macdonnellensis subsp. macdonnellensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia mucronata var longifolia replace: Acacia mucronata subsp. longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia myrifolia replace: Acacia myrtifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. + replace: Acacia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Acacia sp. narrow phyllode (B.R. Maslin 7831) replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia terminalis ssp angustifolia replace: Acacia terminalis subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia terminalis subsp. terminalis replace: Acacia terminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia lebek replace: Albizia lebbeck reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon diversifolium replace: Alectryon diversifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon subdentata replace: Alectryon subdentatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina leuhmanii replace: Allocasuarina luehmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina muellerana replace: Allocasuarina muelleriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema cambegi replace: Amyema cambagei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. 1 replace: Amyema sp. 1 (Alligator; J.Russell-Smith 5448) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. 2 replace: Amyema sp. 2 (Fortescue; M.Trudgen 5358) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. indet. 105/22 replace: Amyema sp. [Amyema sp. indet. 105/22; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -493,76 +353,88 @@ taxonomic_updates: replace: Angophora floribunda reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anodopetalum biglandolosum replace: Anodopetalum biglandulosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma conostephoides replace: Astroloma conostephioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astroloma sp. + replace: Astroloma sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Astrotricha longifolia s.l. replace: Astrotricha longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex spp. replace: Atriplex sp. [Clarke_2015] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Baeckea sp. + replace: Baeckea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Banksia marginata GR replace: Banksia marginata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bauhinia cunninghammii replace: Bauhinia cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera cymposa replace: Billardiera cymosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera dummondii replace: Billardiera drummondii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera longifolia replace: Billardiera longiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia sp. (Bargara L.Pedley 5382) replace: Boerhavia sp. Bargara (L.Pedley 5382) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia sp. (St George A.Hill AQ399299) replace: Boerhavia sp. St George (A.Hill AQ399299) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia anemonifolia var. anemonifolia replace: Boronia anemonifolia subsp. anemonifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bossiaea foliosa sens lat replace: Bossiaea foliosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea neo-anglica replace: Bossiaea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Brachychiton sp. + replace: Brachychiton sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Brachyloma moolya replace: Brachyloma moolya MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. wheatbelt (A.M. Coates 4315) replace: Calectasia grandiflora subsp. Wheatbelt (A.M.Coates 4315) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Callistemon sp. aff. flavovirens replace: Callistemon sp. [Callistemon sp. aff. flavovirens; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -571,50 +443,74 @@ taxonomic_updates: - find: Callitris acuminatus replace: Callitris acuminata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callitris endlicheri juvenile replace: Callitris endlicheri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calothamnus sp. + replace: Calothamnus sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Calytrix sp. + replace: Calytrix sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Capparis lasianthera replace: Capparis lasiantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia adunca replace: Cassinia x adunca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cassinia sp. + replace: Cassinia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cassinia sp. indet. 79/42 replace: Cassinia sp. [Cassinia sp. indet. 79/42; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Cassytha sp. + replace: Cassytha sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Casuarina cunninghammiana replace: Casuarina cunninghamiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Celastrus sp. + replace: Celastrus sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: 'Chenopodium sp. ' + replace: Chenopodium sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cinnamonum virens replace: Cinnamomum virens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coelospermum reticulatus replace: Coelospermum reticulatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia brevicata replace: Commersonia breviseta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum stoechedis replace: Conospermum stoechadis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum wycherlyi replace: Conospermum wycherleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma juniperina replace: Coprosma sp. [Coprosma juniperina; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -624,42 +520,58 @@ taxonomic_updates: replace: Corymbia dolichocarpa reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia maculata-variegata intergrade replace: Corymbia maculata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Corymbia sp. + replace: Corymbia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Crotalaria cunninghamii subsp cunninghamii replace: Crotalaria cunninghamii subsp. cunninghamii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Daphnandra sp.A replace: Daphnandra sp. A reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia quadrilaters replace: Daviesia quadrilatera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium brachypodium replace: Desmodium brachypodum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Desmodium sp. + replace: Desmodium sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dillwynia sp. + replace: Dillwynia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dipteracanthus australasicus subsp australasicus replace: Dipteracanthus australasicus subsp. australasicus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea arnhemicus replace: Dodonaea arnhemica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea hispidulus replace: Dodonaea hispidula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dodonaea sp. + replace: Dodonaea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dodonaea sp. aff. triquetra replace: Dodonaea sp. [Dodonaea sp. aff. triquetra; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -669,47 +581,59 @@ taxonomic_updates: replace: Drypetes australasica reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Einadia sp. + replace: Einadia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Elaeodendron australis var. angustifolia replace: Elaeodendron australe var. angustifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Elaeodendron australisvar. australis replace: Elaeodendron australe var. australe reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Endiandra crassifolia replace: Endiandra crassiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra crassifolia replace: Endiandra crassiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremaea sp. + replace: Eremaea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Erythroxylum sp. (Splityard Creek L.Pedley 5360) replace: Erythroxylum sp. Splityard Creek (L.Pedley 5360) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus apothalasica replace: Eucalyptus apothalassica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus resiniferasubsp. hemilampra replace: Eucalyptus resinifera subsp. hemilampra reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus saligna X botryoides replace: Eucalyptus x [Eucalyptus saligna X botryoides; Clarke_2015] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus sp. + replace: Eucalyptus sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eucalyptus sp. Cattai replace: Eucalyptus sp. Cattai (Gregson s.n. 28 Aug 1954) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus spp. replace: Eucalyptus sp. [Clarke_2015] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -720,77 +644,94 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Eutaxia sp. + replace: Eutaxia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Flueggea virosa ss. melanthesoides replace: Flueggea virosa subsp. melanthesoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Gardenia sp. + replace: Gardenia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Glochidion ferdenandi var ferdenandi replace: Glochidion ferdinandi var. ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glycine crytoloba replace: Glycine cyrtoloba reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp. 3 replace: Glycine sp. 3 (Mitchell Plateau) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp. 4 replace: Glycine sp. 4 (Mitchell Plateau) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp.1 replace: Glycine sp. 1 (Bonny Hills; R.Pullen 13337) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp.2 replace: Glycine sp. 2 (Howard Springs) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp.A replace: Glycine sp. A Kimberley Flora (B.J.Carter 634) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine varians replace: Glycine sp. [Glycine varians; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Gompholobium sp. + replace: Gompholobium sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Gompholobium virgatum var. virgatum replace: Gompholobium virgatum var. virgatum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Grevillea friternata replace: Grevillea triternata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea preisii replace: Grevillea preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea decurrens var phys replace: Hakea decurrens reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania anagalloides var. Southern (A.E. Orchard 1609) replace: Halgania anagalloides var. Southern (A.E.Orchard 1609) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Harnieria kempeana subsp kempeana replace: Harnieria kempeana subsp. kempeana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Hibbertia sp. Woolaning + replace: Hibbertia sp. Woolaning (L.A.Craven 6657) + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Hibbertia sp. aff. rufa replace: Hibbertia sp. [Hibbertia sp. aff. rufa; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -800,22 +741,21 @@ taxonomic_updates: replace: Hibbertia sp. Fine pedicels (R.Schodde 83) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Hibbertia sp. Woolaning - replace: Hibbertia sp. Woolaning (L.A.Craven 6657) - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus heterophyllussubsp. heterophyllus replace: Hibiscus heterophyllus subsp. heterophyllus reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Hibiscus sp. + replace: Hibiscus sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Homoranthus sp. nov. replace: Homoranthus sp. [Homoranthus sp. nov.; Clarke_2015] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Hovea aff heterophylla replace: Hovea sp. [Hovea aff. heterophylla; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -825,42 +765,54 @@ taxonomic_updates: replace: Hovea sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hypocalymma sp. + replace: Hypocalymma sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Indigofera sp MacDonnell Ranges (P K Latz 11587) Peter Wilson replace: Indigofera sp. MacDonnell Ranges (P.K.Latz 11587) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Newdegate (D.B. Foreman 771) replace: Isopogon sp. Newdegate (D.B.Foreman 771) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia sp. (Fairview R.W.Johnson 4026) replace: Jacquemontia sp. Fairview (R.W.Johnson 4026) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum didymum ss. racemosa replace: Jasminum didymum subsp. racemosum reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Kunzea sp + replace: Kunzea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lagunaria patersonii ss. bracteata replace: Lagunaria patersonii var. bracteata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Leptospermum juniperinium replace: Leptospermum juniperinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum polygalifolia replace: Leptospermum polygalifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leptospermum sp. + replace: Leptospermum sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leptospermum sp. aff. grandifolium replace: Leptospermum sp. [Leptospermum sp. aff. grandifolium; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -874,61 +826,65 @@ taxonomic_updates: - find: Leptsopermum microcarpum replace: Leptospermum microcarpum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon compressicarpus replace: Leucopogon compressicarpus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus var. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon neo-anglicus replace: Leucopogon neoanglicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Leucopogon sp. aff. appressus - replace: Leucopogon sp. [Leucopogon sp. aff. appressus; Clarke_2015] - reason: match_09. Rewording taxon with term `affinis` preceding species epithet - to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) + taxonomic_resolution: species +- find: Leucopogon sp. + replace: Leucopogon sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leucopogon sp. 'Hairy' + replace: Leucopogon sp. [Leucopogon sp. 'Hairy'; Clark_2015] + reason: Manual match to genus for taxon that can't be match to species (Elizabeth + Wenk, 2022-11-12) taxonomic_resolution: genus - find: Leucopogon sp. Bifid Eneabba replace: Leucopogon sp. Bifid Eneabba (M.Hislop 1927) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Leucopogon sp. 'Hairy' - replace: Leucopogon sp. [Leucopogon sp. 'Hairy'; Clark_2015] - reason: Manual match to genus for taxon that can't be match to species (Elizabeth - Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. Wheatbelt (S. Murray 257) + replace: Leucopogon sp. Wheatbelt (S.Murray 257) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species +- find: Leucopogon sp. aff. appressus + replace: Leucopogon sp. [Leucopogon sp. aff. appressus; Clarke_2015] + reason: match_09. Rewording taxon with term `affinis` preceding species epithet + to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) + taxonomic_resolution: genus - find: Leucopogon sp. lesueur replace: Leucopogon sp. Lesueur (B.Evans 530) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Leucopogon sp. Wheatbelt (S. Murray 257) - replace: Leucopogon sp. Wheatbelt (S.Murray 257) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lissanthe strigosa ssp subuluta replace: Lissanthe strigosa subsp. subulata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lissanthe strigosa subsp. subuluta replace: Lissanthe strigosa subsp. subulata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Livistona humilis X inermis replace: Livistona x [Livistona humilis X inermis; Clarke_2015] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -943,16 +899,16 @@ taxonomic_updates: - find: Lophostemon suaveolans replace: Lophostemon suaveolens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macrozamia pauli-guilielmi subsp. plurinervia replace: Macrozamia pauli-guilielmi subsp. plurinervia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Maireana decalvens replace: Maireana decalvans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malus X domestica replace: Malus x [Malus X domestica; Clarke_2015] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -962,11 +918,20 @@ taxonomic_updates: replace: Melaleuca pallida reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca scabrum replace: Melaleuca scabra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Melaleuca sp. + replace: Melaleuca sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Melaleuca sp. 'pungent TH02' + replace: Melaleuca sp. [Melaleuca sp. 'pungent TH02'; Clarke_2015] + reason: Manual match to genus for taxon that can't be match to species (Elizabeth + Wenk, 2022-11-12) + taxonomic_resolution: genus - find: Melaleuca sp. aff. comboynensis replace: Melaleuca sp. [Melaleuca sp. aff. comboynensis; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -977,42 +942,37 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus -- find: Melaleuca sp. 'pungent TH02' - replace: Melaleuca sp. [Melaleuca sp. 'pungent TH02'; Clarke_2015] - reason: Manual match to genus for taxon that can't be match to species (Elizabeth - Wenk, 2022-11-12) - taxonomic_resolution: Genus - find: Melicytus dentata replace: Melicytus dentatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. stellate (A. Strid 21885) replace: Microcorys sp. stellate (A.Strid 21885) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus triptycha subsp. triptycha replace: Micromyrtus triptycha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca albens MS replace: Monotoca albens reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca eliptica replace: Monotoca elliptica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca procumbens replace: Moonia procumbens reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nematolepis squameum ssp squameum replace: Nematolepis squamea subsp. squamea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Olearia sp. aff. elliptica replace: Olearia sp. [Olearia sp. aff. elliptica; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1027,15 +987,19 @@ taxonomic_updates: replace: Ozothamnus cupressoides MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Parsonsia sp. + replace: Parsonsia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Passiflora aurantiavar. aurantia replace: Passiflora aurantia var. aurantia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Persoonia fastigata replace: Persoonia fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia hybrid sp. indet. 121/46 replace: Persoonia sp. [Persoonia hybrid sp. indet. 121/46; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1045,15 +1009,15 @@ taxonomic_updates: replace: Petrophile squamata subsp. Northern (J.Monks 40) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phebalium sqamulosum subsp alpinum replace: Phebalium squamulosum subsp. alpinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus gunii replace: Phyllanthus gunnii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. 3 replace: Phyllanthus sp. [Phyllanthus sp. 3; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1067,38 +1031,46 @@ taxonomic_updates: - find: Phyllota phyllicoides replace: Phyllota phylicoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea drupaceae replace: Pimelea drupacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pimelea sp. + replace: Pimelea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pittosporum pauciflorus replace: Citriobatus pauciflorus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum pauciflorus replace: Pittosporum parviflorum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias sambucifolius subsp. A replace: Polyscias sambucifolia subsp. A reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderris elliptica subsp. elliptica replace: Pomaderris elliptica var. elliptica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Pomaderris sp. + replace: Pomaderris sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pomaderris species C replace: Pomaderris sp. C reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. aff. howelliae replace: Prostanthera sp. [Prostanthera sp. aff. howelliae; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1113,110 +1085,138 @@ taxonomic_updates: replace: Psychotria daphnoides f. 'large-leaved' reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Psychotria sp. (Shute Harbour L.J.Webb+ 7916) replace: Psychotria sp. Shute Harbour (L.J.Webb+ 7916) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax buxifolium replace: Psydrax odorata subsp. buxifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Psydrax odoratum replace: Psydrax odorata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax oleifolium replace: Psydrax oleifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Psydrax sp. + replace: Psydrax sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pultenaea parrisiae ssp parrisiae replace: Pultenaea parrisiae subsp. parrisiae reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Pultenaea sp. + replace: Pultenaea sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Rubus fruticosa species agg. replace: Rubus fruticosus reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus moluccanussubsp. moluccanus replace: Rubus moluccanus var. moluccanus reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Rubus sp. + replace: Rubus sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sarcostemma viminale subsp australe replace: Sarcostemma viminale subsp. australe reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Scholtzia sp. + replace: Scholtzia sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Senna artemisioides nothosubsp artemisioides replace: Senna artemisioides subsp. x artemisioides reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides nothosubsp coriacea replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides nothosubsp sturtii replace: Senna artemisioides subsp. x sturtii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sida (Indet replace: Sida sp. [Sida (Indet; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Sida sp. + replace: Sida sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Solanum betacea replace: Solanum betaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum orbiculatum subsp macrophyllum replace: Solanum orbiculatum subsp. macrophyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solanum orbiculatum subsp orbiculatum replace: Solanum orbiculatum subsp. orbiculatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spyridium vexiliferum replace: Spyridium vexilliferum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium eucalyptoides subsp.bleeseri replace: Syzygium eucalyptoides subsp. bleeseri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium eucalyptoides subsp.eucalyptoides replace: Syzygium eucalyptoides subsp. eucalyptoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Syzygium sp. + replace: Syzygium sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tarenna sp. + replace: Tarenna sp. [Clarke_2015] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tasmannia xerophylla replace: Tasmannia xerophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca ciliatum replace: Tetratheca ciliata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp.shrubby replace: Triumfetta sp. [Triumfetta sp.shrubby; Clarke_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1241,12 +1241,12 @@ taxonomic_updates: replace: Zieria smithii subsp. A reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Zieria arborescenssubsp. arborescens replace: Zieria arborescens subsp. arborescens reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Zieria sp. aff. aspalathoides replace: Zieria sp. [Zieria sp. aff. aspalathoides; Clarke_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1261,11 +1261,11 @@ taxonomic_updates: replace: Zieria sp. [Zieria sp. nov. NSW escarpment; Clarke_2015] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Zygophyllum apiculata replace: Zygophyllum apiculatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Cryptandra/Mirbelia sp. diff --git a/data/Collette_2021/metadata.yml b/data/Collette_2021/metadata.yml index 97c08e7cf..211eeb476 100644 --- a/data/Collette_2021/metadata.yml +++ b/data/Collette_2021/metadata.yml @@ -16,8 +16,8 @@ contributors: - last_name: Collette given_name: Justin ORCID: 0000-0002-4618-2677 - affiliation: Australian PlantBank, Australian Institute of Botanical Science, Australian - Botanic Garden, Mount Annan, NSW, Australia + affiliation: Australian PlantBank, Australian Institute of Botanical Science, + Australian Botanic Garden, Mount Annan, NSW, Australia - last_name: Ooi given_name: Mark ORCID: 0000-0002-3046-0417 @@ -73,7 +73,8 @@ dataset: all four study regions, with just six families (Fabaceae, Proteaceae, Myrtaceae, Ericaceae, Rutaceae and Asteraceae) making up almost 70 % of species in all regions ( Appendix 1). - original_file: none; sourced from Supplementary data available online through the manuscript + original_file: none; sourced from Supplementary data available online through the + manuscript notes: none locations: WA: @@ -154,155 +155,159 @@ substitutions: find: MD replace: morphological_dormancy taxonomic_updates: -- find: Rupicola sprengilioides - replace: Epacris sprengelioides - reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) - taxonomic_resolution: Species - find: Boronia deanii replace: Boronia deanei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia nanavar.hyssopifolia replace: Boronia nana var. hyssopifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bossiaea neo-anglica replace: Bossiaea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyloma jillup replace: Brachyloma jillup MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Brachyloma jillup MS + replace: Brachyloma preissii + reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) + taxonomic_resolution: species - find: Brachyloma tamminense replace: Brachyloma tamminense MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea tranularis replace: Dodonaea triangularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris purpurescens replace: Epacris purpurascens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea arenariasubsparenaria replace: Grevillea arenaria subsp. arenaria reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea bauerisubspbaueri replace: Grevillea baueri subsp. baueri reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea buxifoliasubspbuxifolia replace: Grevillea buxifolia subsp. buxifolia reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea diffusasubspdiffusa replace: Grevillea diffusa subsp. diffusa reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea humilissubsphumilis replace: Grevillea humilis subsp. humilis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea juniperinasubspjuniperina replace: Grevillea juniperina subsp. juniperina reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea parviflorasubspparviflora replace: Grevillea parviflora subsp. parviflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea ramosissimasubspramosissima replace: Grevillea ramosissima subsp. ramosissima reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea sericeasubspsericea replace: Grevillea sericea subsp. sericea reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea salicifoliasubspsalicifolia replace: Hakea salicifolia subsp. salicifolia reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea teretifoliasubspteretifolia replace: Hakea teretifolia subsp. teretifolia reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hemigenia diadela replace: Hemigenia diadela reason: match_08. Automatic alignment with synonymous name in APNI (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hemigenia diadela + replace: Hemigenia sp. Three Springs (S.Patrick 4043 A) + reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) + taxonomic_resolution: species - find: Hemigenia dulca replace: Hemigenia dulcis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia retorsa replace: Kennedia retrorsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum ferrugineumvarferrugineum replace: Lasiopetalum ferrugineum var. ferrugineum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Leptospermum deanii replace: Leptospermum deanei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lespedeza junceasubspsericea replace: Lespedeza juncea subsp. sericea reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucopogon fletcherisubspfletcheri replace: Leucopogon fletcheri subsp. fletcheri reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucopogon lanceolatusvarlanceolatus replace: Leucopogon lanceolatus reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon microphyllusvarmicrophyllus replace: Leucopogon microphyllus var. microphyllus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Leucopogon neo-anglicus replace: Leucopogon neoanglicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca groceana replace: Melaleuca groveana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. replace: Microcorys sp. [Collette_2021] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -311,38 +316,34 @@ taxonomic_updates: - find: Persoonia maginata replace: Persoonia marginata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera askiana replace: Prostanthera askania reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera cryptandriodes replace: Prostanthera cryptandroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ricinocarpos pinifolium replace: Ricinocarpos pinifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Rupicola sprengilioides + replace: Epacris sprengelioides + reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) + taxonomic_resolution: species - find: Senna artemisiioidessubspzygophylla replace: Senna artemisioides subsp. zygophylla reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus salingus replace: Stenocarpus salignus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Westringia capitonia replace: Westringia capitonis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-25) - taxonomic_resolution: Species -- find: Brachyloma jillup MS - replace: Brachyloma preissii - reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) - taxonomic_resolution: Species -- find: Hemigenia diadela - replace: Hemigenia sp. Three Springs (S.Patrick 4043 A) - reason: Manual match to accepted APC name. (E. Wenk, 2023-05-25) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Cooper_2004/metadata.yml b/data/Cooper_2004/metadata.yml index 018406dd6..d7f084b3c 100644 --- a/data/Cooper_2004/metadata.yml +++ b/data/Cooper_2004/metadata.yml @@ -72,6 +72,6 @@ taxonomic_updates: replace: Cassytha phaeolasia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Cooper_2013/metadata.yml b/data/Cooper_2013/metadata.yml index 4233836a9..f635dd1fd 100644 --- a/data/Cooper_2013/metadata.yml +++ b/data/Cooper_2013/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( stem_growth_habit = ifelse(height=="prostrate","prostrate",NA), @@ -731,252 +731,240 @@ substitutions: find: aborigines replace: indigenous_people taxonomic_updates: -- find: Euodia sp. - replace: Euodia sp. [Cooper_2013] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Solanum sp. - replace: Solanum sp. [Cooper_2013] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trochocarpa sp. - replace: Trochocarpa sp. [Cooper_2013] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Abutilon (Mataranka) replace: Abutilon sp. Mataranka (R.M.Barker 877) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia disparrima calidestris replace: Acacia disparrima subsp. calidestris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia disparrima disparrima replace: Acacia disparrima subsp. disparrima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Aceratium ferrugneum replace: Aceratium ferrugineum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena hemilampra hemilampra replace: Acmena hemilampra subsp. hemilampra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acmena hemilampra orophila replace: Acmena hemilampra subsp. orophila reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acmena smithii rheophytic type replace: Acmena smithii Rheophytic race reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia (Batavia Downs) replace: Acronychia sp. (Batavia Downs J.R.Clarkson+ 8511) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia acidulat replace: Acronychia acidula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia eugellensis replace: Acronychia eungellensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia vestitta replace: Acronychia vestita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actephila (Claudie River) replace: Actephila sp. (Claudie River BH 7803) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actephila (Possum Scrub) replace: Actephila sp. (Possum Scrub P.I.Forster PIF14372) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actephila (Rocky River) replace: Actephila sp. (Rocky River G.C.Stocker 1042) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actephila (Wooroonooran NP) replace: Actephila sp. (Wooroonooran NP P.I.Forster+ PIF17151) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenia heerophylla replace: Adenia heterophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aglaia (Silver Plaines) replace: Aglaia sp. (Silver Plains L.J.Webb+ 9734) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aglaia slvestris replace: Aglaia silvestris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia (Gap Creek) replace: Aidia sp. (Gap Creek L.W.Jessup 651) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia (Mt Lewis) replace: Aidia sp. (Mt Lewis) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium (Claudie River) replace: Alangium sp. (Claudie River B.P.Hyland 2682RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium villosum polysmoides replace: Alangium villosum subsp. polyosmoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alangium villosum tomentosum replace: Alangium villosum subsp. tomentosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Albizia (Sir Charles Hardy Island) replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia (Windsor Tableland) replace: Albizia sp. Windsor Tableland (B.Gray 2181) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuaria torulosa replace: Allocasuarina torulosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alloxylon wichamii replace: Alloxylon wickhamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema (Forty Mile Scrub) replace: Amyema sp. (Forty Mile Scrub) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema bifuractum replace: Amyema bifurcatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema congener congener replace: Amyema congener subsp. congener reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Amyema congener divergens replace: Amyema congener subsp. divergens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Amylotheca (Topaz) replace: Amylotheca sp. (Topaz) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aneilema sp. (Tower LA) replace: Aneilema sp. (Tower LA P.I.Forster+ PIF14846) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aneilema sp. Tower LA (P.I.Forster +PIF14846) replace: Aneilema sp. Tower LA (P.I.Forster+ PIF14846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aneilema sp. Tower LA (P.I.Forster +PIF14846) Qld Herbarium replace: Aneilema sp. (Tower LA P.I.Forster+ PIF14846) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea (Mt Lewis) replace: Antirhea sp. Mt Misery (L.W.Jessup+ GJD3136) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea putaninosa replace: Antirhea putaminosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Archidendron pruinosum replace: Pararchidendron pruinosum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ardisia (South Mary LA) replace: Ardisia sp. (South Mary LA B.P.Hyland 8778) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ardisia pachyrrachis replace: Ardisia pachyrrhachis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) (Babinda) replace: Argophyllum sp. Babinda (L.S.Smith 10213) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) (Koolmoon Creek) replace: Argophyllum sp. Koolmoon Creek (B.Gray 1040) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) cryptophlebum replace: Argophyllum cryptophlebum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) lejourdanii replace: Argophyllum lejourdanii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) nullumense replace: Argophyllum nullumense reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum (to be included in Agrophyllaceae) verae replace: Argophyllum verae reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron (Boonjee) replace: Argyrodendron sp. 'Boonjee' (B.Hyland 2139 RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron (Karnak) replace: Argyrodendron sp. (Karnak P.I.Forster+ PIF10711) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron (Mt Haig) replace: Argyrodendron sp. (Mt Haig LSS 14307) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron (Whitsundays) replace: Argyrodendron sp. Whitsundays (W.J.McDonald+ 5831) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron (Whyanbeel) replace: Argyrodendron sp. 'Whyanbeel' (B.Hyland 1106 RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron near trifolioratum replace: Argyrodendron sp. [Argyrodendron near trifolioratum; Cooper_2013] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -985,180 +973,180 @@ taxonomic_updates: - find: Argyrodendron sp. Mt Haig ( L.S.Smith+ 14307) replace: Argyrodendron sp. Mt Haig (L.S.Smith+ 14307) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK 1106) replace: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK1106) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron trifolioratum replace: Argyrodendron trifoliolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Artabotrys (Claudie River) replace: Artabotrys sp. (Claudie River B.Gray 3240) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arytera (Dryander Creek) replace: Arytera sp. Dryander Creek (P.R.Sharpe 4184) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asystasia (Newcastle Bay) replace: Asystasia "Newcastle Bay" (Brass 18671) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asystasia australiasica replace: Asystasia australasica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atalaya foveolata replace: Arytera foveolata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atalaya microphylla replace: Arytera microphylla reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atractocarpus fitzalanii fitzalanii replace: Atractocarpus fitzalanii subsp. fitzalanii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atractocarpus fitzalanii tenuipes replace: Atractocarpus fitzalanii subsp. tenuipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrobuxus (to be included in Picrodendraceae) megacarpus replace: Austrobuxus megacarpus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Backhousia (Tully River) replace: Backhousia sp. (Tully River) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia virgata replace: Baeckia virgata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia integrifolia campar replace: Banksia integrifolia subsp. compar reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Beilschmiedia penisularis replace: Beilschmiedia peninsularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Belpharocarya involucrigera replace: Blepharocarya involucrigera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bosistoa monotsylis replace: Bosistoa monostylis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brombya (Gap Creek) replace: Brombya sp. Gap Creek (L.S.Smith 11116) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brownlowia argentea replace: Brownlowia argentata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bruguiera gymnorhize replace: Bruguiera gymnorhiza reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bubbia queenslandiana australis replace: Bubbia queenslandiana subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bubbia queenslandiana queenslandiana replace: Bubbia queenslandiana subsp. queenslandiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caelospermum (Kingfisher Park) replace: Caelospermum sp. (Kingfisher Park) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caesalpinia cristata replace: Caesalpinia crista reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callerya (Barratt Creek) replace: Callerya sp. Barratt Creek (G.Sankowsky 428) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callerya (Beatrice Creek) replace: Callerya sp. (Beatrice Creek L.S.Smith 10487) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callerya mucunoides replace: Calopogonium mucunoides reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistemon recurus replace: Callistemon recurvus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum biocolor replace: Calophyllum bicolor reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canaga odorata replace: Cananga odorata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canarium australasicum australianum replace: Canarium australianum var. australianum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Canthium (Berrigurra Station) replace: Canthium sp. (Berrigurra Station E.R.Anderson 2829) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Friday Island) replace: Canthium sp. (Friday Island L.J.Brass 13158) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Herberton Range) replace: Canthium sp. (Herberton Range SFK 1377) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Thornton Peak) replace: Canthium sp. (Thornton Peak H.Flecker NQNC7110) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Thursday Island) replace: Canthium sp. (Thursday Island E.Cowley 10) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Weipa) replace: Canthium sp. (Weipa A.Morton 1773) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium (Whitefield Range) replace: Canthium sp. (Whitfield Range) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium NA replace: Canthium sp. [Canthium NA; Cooper_2013] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -1168,635 +1156,639 @@ taxonomic_updates: replace: Capparis sp. Bamaga (V.Scarth-Johnson 1048A) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis (Coen) replace: Capparis sp. (Coen) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis (Gloucester Island) replace: Capparis sp. (Gloucester Island G.N.Batianoff 920912) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cascabela thevetica replace: Cascabela thevetia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casearia (Mission Beach) replace: Casearia sp. (Mission Beach B.P.Hyland 773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia (Kalpowar) replace: Cassia sp. (Kalpowar D.G.Fell+ DF2769) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia (Paluma Range) replace: Cassia sp. Paluma Range (G.Sankowsky+ 450) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia brewsteri brewster replace: Cassia brewsteri var. brewsteri reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cassia brewsteri tomentella replace: Cassia brewsteri var. tomentella reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Casuarian equisetifolia replace: Casuarina equisetifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cathormion unbellatum replace: Cathormion umbellatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cayratia trifoliata replace: Cayratia trifolia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratopetalum succiruburm replace: Ceratopetalum succirubrum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionanthus sp. [Linociera sp. (Little Pine LA BH 2520RFK)] replace: Linociera sp. (Little Pine LA BH 2520RFK) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysanthemoides monilifera rotundata replace: Chrysanthemoides monilifera subsp. rotundata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chukrasia tubularis replace: Chukrasia tabularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus hastat replace: Cissus hastata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citriobatis pauciflorus replace: Citriobatus pauciflorus reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Claoxylon tenerifolium (australe latifolia) replace: Claoxylon tenerifolium reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cobretum trifoliatum replace: Combretum trifoliatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codiaeum variagatum replace: Codiaeum variegatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Columbrina asiatica replace: Colubrina asiatica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conyza canadnsis replace: Conyza canadensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cordyline fruitcosa replace: Cordyline fruticosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa lawrenciana lawrenciana replace: Correa lawrenciana var. lawrenciana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Corsia (Herberton Range) replace: Corsia sp. (Herberton Range B.Gray 3994) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton capitis-yor replace: Croton capitis-york reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crudia (Archer River) replace: Crudia sp. (Archer River) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya (Boonjee) replace: Cryptocarya sp. Boonjee (B.Hyland 25794RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya (Gadgara) replace: Cryptocarya sp. (Gadgarra BH 25231RFK) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya cunnighamii replace: Cryptocarya cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya obvata replace: Cryptocarya oblata reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya onoprienkana replace: Cryptocarya onoprienkoana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya ridiga replace: Cryptocarya rigida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya triplinervis pubens replace: Cryptocarya triplinervis var. pubens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptocarya triplinervis riparia replace: Cryptocarya triplinervis var. riparia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cupaniopsis (Tully Falls) replace: Cupaniopsis sp. (Tully Falls) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cupaniopsis flagelliformis australia replace: Cupaniopsis flagelliformis var. australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cupaniopsis serrata tomentella replace: Cupaniopsis serrata var. tomentella reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cyathostemma micrantum replace: Cyathostemma micranthum reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dalbergia densa australis replace: Dalbergia densa var. australis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dalbergia densa desna replace: Dalbergia densa var. densa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daphnandra (Black-leaved Socketwood) replace: Daphnandra melasmena reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra (Common Socketwood) replace: Daphnandra apatela reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra (Illawarra Socketwood) replace: Daphnandra sp. Illawarra (R.Schodde 3475) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Davidsonia pruriens pruriens replace: Davidsonia pruriens var. pruriens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Decaisninia brittenii replace: Decaisnina brittenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Decaisninia congesta replace: Decaisnina congesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Decaisninia hollrungii replace: Decaisnina hollrungii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Decaisninia signata replace: Decaisnina signata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia (Jardine River Mouth) replace: Denhamia sp. (Jardine River B.P.Hyland 10250) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia pittosporoides angustifolia replace: Denhamia pittosporoides subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Denhamia pittosporoides pittosporoides replace: Denhamia pittosporoides subsp. pittosporoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Derris (Claudie River) replace: Derris sp. (Claudie River L.J.Webb+ 8348) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris (Daintree) replace: Derris sp. (Daintree D.E.Boyland+ 469) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris rifoliata replace: Derris trifoliata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmos (Mossman River) replace: Desmos sp. (Mossman River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicksonia yungiae replace: Dicksonia youngiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Baird LA) replace: Diospyros sp. Baird LA (B.P.Hyland 9374) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Bamaga) replace: Diospyros sp. (Bamaga) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Kuranda) replace: Diospyros sp. (Kuranda) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Millaa Millaa) replace: Diospyros sp. (Millaa Millaa L.W.Jessup 515) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Mt Lewis) replace: Diospyros sp. (Mt Lewis L.S.Smith 10107) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Mt Spurgeon) replace: Diospyros sp. 'Mt Spurgeon' (C.T.White 10677) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Mt White) replace: Diospyros sp. (Mt White P.I.Forster PIF14415) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros (Swipers Flat) replace: Diospyros sp. (Swipers Flat) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros major ebenus replace: Diospyros major var. ebenus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea lanceolata lanceolata replace: Dodonaea lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea lanceolata subscessilifolia replace: Dodonaea lanceolata var. subsessilifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dryadodaphne (Mt Lewis) replace: Dryadodaphne sp. 'Mt Lewis' (B.P.Hyland+ RFK1496) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysoxylum acutangulatum replace: Dysoxylum acutangulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysoxylum sectosum replace: Dysoxylum setosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecualyptus crebra replace: Eucalyptus crebra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecualyptus grandis replace: Eucalyptus grandis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecualyptus macta replace: Eucalyptus macta reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecualyptus pellita replace: Eucalyptus pellita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecualyptus tereticornis replace: Eucalyptus tereticornis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehretia (Whitefield Range) replace: Ehretia sp. (Whitfield Range) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehretia sp. Whitfield Range (R.Jago 17) Qld Herbarium replace: Ehretia sp. (Whitfield Range) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus (Minyon) replace: Elaeocarpus sp. Minyon reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus (Mossman Bluff) replace: Elaeocarpus sp. (Mossman Bluff D.G.Fell DF1666) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus (Mt Bellenden Kerr) replace: Elaeocarpus sp. Mt Bellenden Ker (L.J.Brass 18336) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus (Mt Spurgeon) replace: Elaeocarpus sp. (Mt Spurgeon) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus (Windsor Tableland) replace: Elaeocarpus sp. (Windsor Tableland L.W.Jessup+ GJM1378) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus largiflorens largiflorens replace: Elaeocarpus largiflorens subsp. largiflorens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Elaeocarpus largiflorens retinervis replace: Elaeocarpus largiflorens subsp. retinervis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Elatostachys megalantha replace: Elattostachys megalantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elatostachys microcarpa replace: Elattostachys microcarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elatostachys xylocarpa replace: Elattostachys xylocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emmenosperma alphitoniodies replace: Emmenosperma alphitonioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emmenosperma cunnighamii replace: Emmenosperma cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra acuninata replace: Endiandra acuminata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra monothyra monothyra replace: Endiandra monothyra subsp. monothyra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Endiandra monothyra trichophylla replace: Endiandra monothyra subsp. trichophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Endiandra sp. nov. (Crystal Creek) replace: Endiandra sp. 1 (Crystal Creek) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endospermum mymecophilum replace: Endospermum myrmecophilum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum (Mosquito Pt) replace: Erythroxylum sp. (Mosquito Point J.R.Clarkson+ 9991) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum (Splityard Creek) replace: Erythroxylum sp. (Splityard Creek L.Pedley 5360) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum (Topaz) replace: Erythroxylum sp. (Topaz) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Euodia sp. + replace: Euodia sp. [Cooper_2013] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Faradaya (previously included in Verbenaceae) splendida replace: Faradaya splendida reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus superba henneana replace: Ficus superba var. henneana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus virens (sublanceolata) replace: Ficus virens var. sublanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Flacourtia (Shiptons Flat) replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia acuminata replace: Flindersia acuminata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia australis replace: Flindersia australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia bennettiana replace: Flindersia bennettiana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia bourjotiana replace: Flindersia bourjotiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia brassii replace: Flindersia brassii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia brayleyana replace: Flindersia brayleyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia collina replace: Flindersia collina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia ifflaiana replace: Flindersia ifflaiana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia laevicarpa replace: Flindersia laevicarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia oppositifolia replace: Flindersia oppositifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia pimenteliana replace: Flindersia pimenteliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia schottiana replace: Flindersia schottiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindasia xanthoxyla replace: Flindersia xanthoxyla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freycinetia (Claudie River) replace: Freycinetia sp. (Claudie River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ganophyllum flacatum replace: Ganophyllum falcatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia (Claudie River) replace: Garcinia sp. Claudie River (L.J.Brass 19658) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia (Davies Creek) replace: Garcinia sp. (Davies Creek JGT 14745) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia (Mossman) replace: Garcinia sp. (Mossman) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia sp. Claudie River (L.J.Brass 19658) Qld Herbarium replace: Garcinia sp. Claudie River (L.J.Brass 19658) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gaultheria (Point Lookout) replace: Gaultheria sp. Point Lookout (J.B.Williams NE37757) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geijera salicifolia latifolia replace: Geijera salicifolia var. latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Geijera salicifolia salicifolia replace: Geijera salicifolia var. salicifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Geitonoplesium (to be included in Hemerocallidaceae) cymosum replace: Geitonoplesium cymosum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen nov (Monimiaceae) (Davies Creek) replace: Gen. (AQ63687) sp. (Davies Creek L.J.Webb+ 6430) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen nov (Monimiaceae) (McDowall Range) replace: Wilkiea sp. McDowall Range (J.G.Tracey 14552) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen nov (Rubiaceae) (Boonjee) replace: Rubiaceae Gen. nov. sp. (Boonjee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen nov (Rubiaceae) (Shuttle Harbour) replace: Rubiaceae Gen. Nov. sp. (Shute Harbour DAH Q811) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen nov (Sapindaceae) (Noah Creek) replace: Sapindaceae sp. (Noah Creek BG 6026) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gevuina bleasdalie replace: Gevuina bleasdalei reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gillbeea adenopetla replace: Gillbeea adenopetala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion harveyanum harveyanum replace: Glochidion harveyanum var. harveyanum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion harveyanum pubescens replace: Glochidion harveyanum var. pubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion sessiliflorum pedicellatum replace: Glochidion sessiliflorum var. pedicellatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion sessiliflorum sessiliflorum replace: Glochidion sessiliflorum var. sessiliflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glossocarya (previously included in Verbenaceae) calcicola replace: Glossocarya calcicola reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goniothalamus australiasica replace: Goniothalamus australis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossia bamagnsis replace: Gossia bamagensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossia sp. aff. acmenoides replace: Gossia sp. [Gossia sp. aff. acmenoides; Cooper_2013] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1810,476 +1802,476 @@ taxonomic_updates: - find: Guifoylia monostylis replace: Guilfoylia monostylis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes sp. (Hinchinbrook Island) replace: Gynochthodes sp. (Hinchinbrook Island A.S.Thorsborne+ 337) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochtodes (Hinchinbrook Island) replace: Gynochthodes sp. (Hinchinbrook Island A.S.Thorsborne+ 337) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochtodes (Lamb Range) replace: Gynochtodes sp. (Lamb Range) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochtodes sp. (Hinchinbrook Island) replace: Gynochthodes sp. (Hinchinbrook Island A.S.Thorsborne+ 337) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus (Cooper Creek) replace: Haplostichanthus sp. (Cooper Creek BG 2433) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus (Johnstone River) replace: Haplostichanthus sp. (Johnstone River L.W.Jessup+ 471) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus (Mt Finnigan) replace: Haplostichanthus sp. (Mt Finnigan) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus (Rocky River Scrub) replace: Haplostichanthus sp. (Rocky River Scrub P.I.Forster+ PIF10617) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus (Topaz) replace: Haplostichanthus sp. (Topaz LWJ 520) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedraianthera (Mossman) replace: Hedraianthera sp. (Mossman) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hetrostemma acuminatum replace: Heterostemma acuminatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus (Macrostelia sp. (Bolt Head BG 6853)) replace: Macrostelia sp. (Bolt Head BG 6853) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus divarticatus replace: Hibiscus divaricatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus foresteri replace: Hibiscus forsteri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus vitifolus replace: Hibiscus vitifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea (Devils Thumb) replace: Hollandaea sp. (Devils Thumb P.I.Forster+ PIF10720) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea (Pinnacle Rock Track) replace: Hollandaea sp. Pinnacle Rock Track (P.I.Forster+ PIF10714) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollrungia aurantoides replace: Hollrungia aurantioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus nutuns replace: Homalanthus nutans reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalium (Johnstone River) replace: Homalium sp. Johnstone River (N.Michael 176) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalium (South Molle Island) replace: Homalium sp. (South Molle Island J.A.Gresty AQ208995) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hyptis captata replace: Hyptis capitata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilex (Gadgarra) replace: Ilex sp. 'Gadgarra' (B.P.Hyland RFK 2011) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilex arnhemensis ferdinandi replace: Ilex arnhemensis subsp. ferdinandi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ilex sp. Gadgarra (B.P.Hyland RFK 2011) Qld Herbarium replace: Ilex sp. 'Gadgarra' (B.P.Hyland RFK 2011) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indiofera suffruticosa replace: Indigofera suffruticosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Intsia bjiuga replace: Intsia bijuga reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea trilobata replace: Ipomoea triloba reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixora (North Mary) replace: Ixora sp. (North Mary LA B.P.Hyland 8618) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jagera pseudorhus integerrima replace: Jagera pseudorhus var. integerrima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Jagera pseudorhus pseudorhus replace: Jagera pseudorhus var. pseudorhus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Jasminum didymum didymum replace: Jasminum didymum subsp. didymum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jasminum didymum lineare replace: Jasminum didymum subsp. lineare reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jasminum didymum racemosum replace: Jasminum didymum subsp. racemosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Juncus uistatis replace: Juncus usitatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia ribocimda replace: Kennedia rubicunda reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagerstoremia archeriana replace: Lagerstroemia archeriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepiderema (Impulse Creek) replace: Lepiderema sp. Impulse Creek (A.B.Pollock 73) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepotspermum wooroonooran replace: Leptospermum wooroonooran reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum confertus replace: Leptospermum confertum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Licuala ramsyi replace: Licuala ramsayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Linociera (Little Pine) replace: Linociera sp. (Little Pine LA BH 2520RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophspermum erubescens replace: Lophospermum erubescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maclura cochinochinensis replace: Maclura cochinchinensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macrostelia (Bolt Head) replace: Macrostelia sp. (Bolt Head) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macrostelia grandifolia grandifolia replace: Macrostelia grandifolia subsp. grandifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Macrostelia grandifolia macilwraithensis replace: Macrostelia grandifolia subsp. macilwraithensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Maesa dependens dependens replace: Maesa dependens var. dependens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Maesa dependens pubescens replace: Maesa dependens var. pubescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mallotus ficifolus replace: Mallotus ficifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus (Windsor Tableland) replace: Maytenus sp. Windsor Tableland (B.Hyland 3416RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma (East Mulgrave River) replace: Medicosma sp. (East Mulgrave River) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma (Karnak) replace: Medicosma sp. (Karnak P.I.Forster+ PIF15541) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma gladulosa replace: Medicosma glandulosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medinilla ballas-headleyi replace: Medinilla balls-headleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne (Henrietta Creek) replace: Meiogyne sp. (Henrietta Creek L.W.Jessup 512) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne (Mt Lewis) replace: Meiogyne sp. (Mt Lewis L.W.Jessup 554) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne (Tingle Scrub) replace: Meiogyne sp. (Tingle Scrub D.G.Fell+ DGF2676) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne cilindocarpa replace: Meiogyne cylindrocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melia azedarach (australasica) replace: Melia azedarach var. australasica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Melicope xanthozyloides replace: Melicope xanthoxyloides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum (Claudie River) replace: Melodorum sp. (Claudie River BH 21171V) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum (Font Hills) replace: Melodorum sp. (Font Hills) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum (Stone Crossing) replace: Melodorum sp. (Stone Crossing LWJ 814) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum (Topaz) replace: Melodorum sp. (Topaz) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua (Boonjee) replace: Mesua sp. (Boonjee AKI 1218) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua sp. Boonjee (A.K. Irvine 1218) replace: Mesua sp. Boonjie (A.K.Irvine 1218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Millettia (McIlwraith) replace: Millettia sp. (McIlwraith) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mimosops elengi replace: Mimusops elengi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mischocarpus pyriformis pyriformis replace: Mischocarpus pyriformis subsp. pyriformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mischocarpus pyriformis retusus replace: Mischocarpus pyriformis subsp. retusus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mischocarpus stipiatus replace: Mischocarpus stipitatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Molineria (previously included in Liliaceae) capitulata replace: Molineria capitulata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Momordica cochnchinensis replace: Momordica cochinchinensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda (Altamoui Range) replace: Morinda sp. (Altanmoui Range B.P.Hyland 6323) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda (Bellenden Ker) replace: Morinda sp. (Bellenden Ker W.Cooper+ 1526) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda (Iron Range) replace: Morinda sp. (Iron Range) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda (Mt Lewis) replace: Morinda sp. (Mt Lewis L.W.Jessup+ GJM228) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda citrifolia bracteata replace: Morinda citrifolia var. bracteata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Morinda citrifolia citrifolia replace: Morinda citrifolia var. citrifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mukia (Little Annan River) replace: Mukia sp. 'Little Annan River' (B.Gray 101) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine ireneae curvata replace: Myrsine ireneae subsp. curvata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myrsine ireneae ireneae replace: Myrsine ireneae subsp. ireneae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Neolitsea brasii replace: Neolitsea brassii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neonanuclea gordoniana replace: Neonauclea gordoniana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana foresteri replace: Nicotiana forsteri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Niemeyera (Churchill Creek) replace: Niemeyera sp. (Churchill Creek) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Niemeyera (Mt Lewis) replace: Niemeyera sp. Mt Lewis (A.K.Irvine 1402) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Niemeyera chartaceat replace: Niemeyera chartacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea (Elcho Island) replace: Notelaea sp. (Elcho Island C.R.Dunlop 7597) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea microcarpa velutina replace: Notelaea microcarpa var. velutina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Nothofagus cunnighamii replace: Nothofagus cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Odontonema tubaceforme replace: Odontonema tubaeforme reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olea panicultata replace: Olea paniculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Operculian riedeliana replace: Operculina riedeliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oraniopsis appendicultat replace: Oraniopsis appendiculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orthosiphon arostatis replace: Orthosiphon aristatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Palaqium galactoxylon replace: Palaquium galactoxylon reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus (Russell River) replace: Pandanus sp. (Russell River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus dammanii replace: Pandanus dammannii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus solmslaubachii replace: Pandanus solms-laubachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus x nullumiae (P. yalna x P. conicus) replace: Pandanus x [Pandanus x nullumiae (P. yalna x P. conicus); Cooper_2013] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2288,210 +2280,210 @@ taxonomic_updates: - find: Pararistolochia peninularis replace: Pararistolochia peninsularis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parmentiera auleata replace: Parmentiera aculeata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parsonsia feruginea replace: Parsonsia ferruginea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora (Kuranda) replace: Passiflora kuranda reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peperomia blanda floribunda replace: Peperomia blanda var. floribunda reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Phebalium squameum squameum replace: Phebalium squameum subsp. squameum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus paraelongipes replace: Phyllanthus praelongipes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. (Bulburin) replace: Phyllanthus sp. Bulburin (P.I.Forster+ PIF16034) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilidiostigma (Mt Lewis) replace: Pilidiostigma sp. (Mt Lewis G.P.Guymer 2024) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea ligustrina hypericina replace: Pimelea ligustrina subsp. hypericina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea ligustrina ligustrina replace: Pimelea ligustrina subsp. ligustrina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Piper (Leo Creek) replace: Piper sp. (Leo Creek B.P.Hyland 6367) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plectranthus (Font Hills) replace: Plectranthus sp. (Font Hills BG 6336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pleiogynum timorense replace: Pleiogynium timoriense reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pleurostylia oppositta replace: Pleurostylia opposita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyalthia (Wyvur) replace: Polyalthia sp. (Wyvuri B.P.Hyland RFK2632) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma (Mt Bellenden Kerr) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma (Mt Lewis) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. Mt Lewis (B.Hyland RFK25241) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias macgilivrayi replace: Polyscias macgillivrayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria (Barong) replace: Pouteria sp. (Barong M.Tucker 22) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria (Mt Lewis) replace: Pouteria sp. (Mt Lewis B.P.Hyland 579) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria castanoperma replace: Pouteria castanosperma reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria myrsinifolia (myrsinoides) replace: Pouteria myrsinifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria personiorum replace: Pouteria pearsoniorum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria queenslandica (laurifolia) replace: Pouteria queenslandica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pozolzia zeylanica replace: Pouzolzia zeylanica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuduvaria froggatti replace: Pseuduvaria froggattii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuduvaria mulgraveana glabrescens replace: Pseuduvaria mulgraveana var. glabrescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pseuduvaria mulgraveana mulgraveana replace: Pseuduvaria mulgraveana var. mulgraveana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Psychotria (Daintree NP) replace: Psychotria sp. Daintree NP (P.I.Forster+ PIF21974) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria (Danbulla) replace: Psychotria sp. (Danbulla S.T.Blake 15262) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria (Mt Lewis) replace: Psychotria sp. (Mt Lewis V.K.Moriarty 2445) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria (Pajinka) replace: Psychotria sp. (Pajinka) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria (Shuttle Harbour) replace: Psychotria sp. (Shute Harbour L.J.Webb+ 7916) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria (Utchee Creek) replace: Psychotria sp. (Utchee Creek) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria simmondsiana glabrescens replace: Psychotria simmondsiana var. glabrescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Psychotria submontatn replace: Psychotria submontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pternandra coreulescens replace: Pternandra coerulescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pycanrrhena novoguineensis replace: Pycnarrhena novoguineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pycanrrhena ozantha replace: Pycnarrhena ozantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia (Barong) replace: Quassia sp. Barong (B.Gray 742) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia (Tozer Range) replace: Quassia sp. (Tozer Range L.J.Brass 19393) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. (Mt Goonaneman) replace: Quassia sp. (Mt Goonaneman J.Randall 738) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. [Quassia sp. nov.] replace: Samadera sp. [Quassia sp. [Quassia sp. nov.]; Cooper_2013] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -2505,508 +2497,516 @@ taxonomic_updates: - find: Quintinia (to be included in Sphenstemonaceae) fawkneri replace: Quintinia fawkneri reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quintinia (to be included in Sphenstemonaceae) quatrefagesii replace: Quintinia quatrefagesii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia (Boonjee) replace: Randia sp. (Boonjee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia (Gordon Creek) replace: Randia sp. Gordon Creek (B.P.Hyland 15252) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Atherton) replace: Rapanea sp. (Atherton K.J.White AQ91778) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Emerald) replace: Rapanea sp. (Emerald LA A.K.Irvine 21) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Mountain Rapanea) replace: Rapanea sp. (Mountain Rapanea) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Mt Bartle Frere) replace: Rapanea sp. (Mt Bartle Frere C.T.White 1279) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Mt Blackwood) replace: Rapanea sp. (Mt Blackwood W.J.McDonald 4576) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Ravenshoe) replace: Rapanea sp. (Ravenshoe H.Flecker NQNC5524) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea (Roaring Meg Creek) replace: Rapanea sp. (Roaring Meg Creek L.W.Jessup 682) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea subsessilis cryptostemon replace: Rapanea subsessilis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea subsessilis subsessilis replace: Rapanea subsessilis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea ureceolata replace: Rapanea urceolata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia (Cape York) replace: Rhodamnia sp. (Cape York) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia (McIlwraith Range) replace: Rhodamnia sp. (McIlwraith Range L.J.Webb+ 9527) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia (Upper Massy Creek) replace: Rhodamnia sp. (Upper Massy Creek) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodsphaera rhodanthema replace: Rhodosphaera rhodanthema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ripogonum (to be included in Rhipogonaceae) album replace: Ripogonum album reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ripogonum (to be included in Rhipogonaceae) brevifolium replace: Ripogonum brevifolium reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ripogonum (to be included in Rhipogonaceae) discolor replace: Ripogonum discolor reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ripogonum (to be included in Rhipogonaceae) elseyanum replace: Ripogonum elseyanum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rostelllaria adscendes replace: Rostellularia adscendens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubiaceae Gen. Nov. sp. (Shute Harbour DAH Q811) replace: Gen. (AQ520454) sp. Shute Harbour (D.A.Halford Q811) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus moluccanus moluccanus replace: Rubus moluccanus var. moluccanus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rubus moluccanus trilobus replace: Rubus moluccanus var. trilobus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Samadera sp. Mt Goonanaman (J.Randall 738) replace: Samadera sp. Mt Goonaneman (J.Randall 738) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sambucus canadnsis replace: Sambucus canadensis reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sankowskya (to be included in Picrodendraceae) stipularis replace: Sankowskya stipularis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcomelicopes simplicifolia (simplicifolia) replace: Sarcomelicope simplicifolia subsp. simplicifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sarcopteryx (McIlwraith Range) replace: Sarcopteryx sp. (McIlwraith Range BH 3261RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcotoechia (Mt Carbine) replace: Sarcotoechia sp. (Mt Carbine L.W.Jessup+ GJM995) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauraia andreana replace: Saurauia andreana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schistocharpaea johnsonii replace: Schistocarpaea johnsonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sciaphila (Hann Creek) replace: Sciaphila sp. (Hann Creek) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida (Samll Flower) replace: Sida sp. Small Flower (B.Gray 5657) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida rohlnae replace: Sida rohlenae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum (Bamaga) replace: Solanum sp. (Bamaga V.Scarth-Johnson 1117A) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum (Bellenden Ker) replace: Solanum sp. (Bellenden Ker) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum (Mt Dryander) replace: Solanum sp. (Mt Dryander G.P.Guymer 1743) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum defesum replace: Solanum defensum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum maccorai replace: Solanum macoorai reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Solanum sp. + replace: Solanum sp. [Cooper_2013] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Solanum viridifoliu, replace: Solanum viridifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spherantia chartacea replace: Sphaerantia chartacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spherantia discorlor replace: Sphaerantia discolor reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus (Hinchinbrook Island) replace: Stenocarpus sp. (Hinchinbrook Island F.D.Hockings AQ229860) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus crptocarpus replace: Stenocarpus cryptocarpus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus sp. Hinchinbrook Is. (F.D.Hocking AQ229860) replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stephania (Bamaga) replace: Stephania sp. (Bamaga L.S.Smith AQ170418) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sterculia (Annan River) replace: Sterculia sp. Annan River (L.J.Brass 20319) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Strychnos (sometimes included in Loganiaceae) lucida replace: Strychnos lucida reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Strychnos (sometimes included in Loganiaceae) minor replace: Strychnos minor reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Strychnos (sometimes included in Loganiaceae) psilosperma replace: Strychnos psilosperma reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos (Big Tableland) replace: Symplocos sp. (Big Tableland BH 10582) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos (Boonjee) replace: Symplocos boonjee reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos (Mt Finnigan) replace: Symplocos sp. 'Mt Finnigan' (L.J.Brass 20129) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos (North Mary) replace: Symplocos sp. (North Mary B.Gray 2543) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos ampuliformis replace: Symplocos ampulliformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos grantitcola replace: Symplocos graniticola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos stawellii stawellii replace: Symplocos stawellii var. stawellii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Syzygium (Bora LA) replace: Syzygium sp. (Bora LA) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium (Noah Creek) replace: Syzygium sp. (Noah Creek) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium bamagnse replace: Syzygium bamagense reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium forte forte replace: Syzygium forte subsp. forte reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium forte potamophilum replace: Syzygium forte subsp. potamophilum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium monopsermum replace: Syzygium monospermum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium wilsonii cryptophlebium replace: Syzygium wilsonii subsp. cryptophlebium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium wilsonii wilsonii replace: Syzygium wilsonii subsp. wilsonii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tapeinosperma (Ceder Bay) replace: Tapeinosperma sp. (Cedar Bay J.G.Tracey 14780) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarenna (Ka Ka Mundi NP) replace: Tarenna sp. (Ka Ka Mundi NP W.J.McDonald+ 4642) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarenna (Mt Lewis) replace: Tarenna sp. (Mt Lewis B.P.Hyland 3403) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia (Mt Bellenden Ker) replace: Tasmannia sp. (Mt Bellenden Ker J.R.Clarkson 6571) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia glacifolia replace: Tasmannia glaucifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecomanthe (Roaring Meg) replace: Tecomanthe sp. 'Roaring Meg' (L.J.Brass 20326) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetracera nordriana replace: Tetracera nordtiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetrasynandra (Mt Lewis) replace: Tetrasynandra sp. 'Mt Lewis' (B.P.Hyland 7907) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thismia (Ty-Gwyn) replace: Thismia sp. (Ty-Gwyn) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thrypotmene oligandra replace: Thryptomene oligandra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonus (Claudie River) replace: Timonius sp. (Claudie River BH 21096V) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonus simgularis replace: Timonius singularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonus timon replace: Timonius timon reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Toechima monticolaoblatus replace: Toechima monticola reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tournefotia muelleri replace: Tournefortia muelleri reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tournefotia sarmentosa replace: Tournefortia sarmentosa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trema tomentosa tomentosa replace: Trema tomentosa var. tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trema tomentosa viridis replace: Trema tomentosa var. viridis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trichosanthes (Mt. Lewis) replace: Trichosanthes sp. Mt Lewis reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trihodesma zeylanicum replace: Trichodesma zeylanicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tristanopsis exiliflora replace: Tristaniopsis exiliflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tristellateia australiasiae replace: Tristellateia australasiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trochocarpa sp. + replace: Trochocarpa sp. [Cooper_2013] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Troplis scandens replace: Trophis scandens reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Turraea pusescens replace: Turraea pubescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tylophora wiliamsii replace: Tylophora williamsii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urena lobatta replace: Urena lobata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uromyrtus metroideros replace: Uromyrtus metrosideros reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uromyrtus sp. (Lamington NP) replace: Uromyrtus lamingtonensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vavaea anicorum replace: Vavaea amicorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Waterhousea mlgraveana replace: Waterhousea mulgraveana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Waterhousea unipunctat replace: Waterhousea unipunctata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wendlandia (Thornton Peak) replace: Wendlandia sp. (Thornton Peak) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wendlandia connuata replace: Wendlandia connata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Whyanbeelia (to be included in Picrodendraceae) terrae-reginae replace: Whyanbeelia terrae-reginae reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Barong) replace: Wilkiea sp. (Barong L.W.Jessup 719) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (McIlwraith) replace: Wilkiea sp. (McIlwraith) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Mt Hemmant) replace: Wilkiea sp. (Mt. Hemmant BH 8485) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Mt Lewis) replace: Wilkiea sp. 'Mt Lewis' (L.J.Webb & J.G.Tracey 10501) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Mt Molloy) replace: Wilkiea sp. (Mt Molloy L.S.Smith 3955) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Palmerston) replace: Wilkiea sp. (Palmerston) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea (Russell Gorge) replace: Wilkiea sp. (Russell Gorge S.J.Dansie 1909) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wrightia laevis millgar replace: Wrightia laevis subsp. millgar reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia pubescens penicillata replace: Wrightia pubescens subsp. penicillata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xeromphis sp. replace: Xeromphis sp. [Cooper_2013] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -3016,34 +3016,34 @@ taxonomic_updates: replace: Xylopia sp. (Bertiehaugh Homestead) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma (Mt Lewis) replace: Xylosma sp. (Mt Lewis GS 1108) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma (Temple Bay) replace: Xylosma sp. (Temple Bay P.I.Forster PIF8980) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp. Mt Lewis (G.Sankowsky 1108) replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma terrereginae replace: Xylosma terrae-reginae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria sp. (Brola Park) replace: Zieria sp. (Brolga Park A.R.Bean 1002) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zingiver zerumbet replace: Zingiber zerumbet reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Sambucus canadnsis diff --git a/data/Cowling_1987/metadata.yml b/data/Cowling_1987/metadata.yml index 30a91c200..93fb025b7 100644 --- a/data/Cowling_1987/metadata.yml +++ b/data/Cowling_1987/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Mount Adams" diff --git a/data/Craven_1987/metadata.yml b/data/Craven_1987/metadata.yml index 83a11d2dc..90760ce9b 100644 --- a/data/Craven_1987/metadata.yml +++ b/data/Craven_1987/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `flowering month begin` = if_else(`flowering month begin` == "all year","1",`flowering month begin`), diff --git a/data/Craven_2010/metadata.yml b/data/Craven_2010/metadata.yml index 641515196..19c4e69ea 100644 --- a/data/Craven_2010/metadata.yml +++ b/data/Craven_2010/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2010 taxon_name: binomial @@ -117,6 +117,6 @@ taxonomic_updates: - find: Melaleuca protusa replace: Melaleuca protrusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Crisp_2017/metadata.yml b/data/Crisp_2017/metadata.yml index 33b0ab418..52a4413b8 100644 --- a/data/Crisp_2017/metadata.yml +++ b/data/Crisp_2017/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( flowering_time = ifelse(is.na(data$`flowering month begin`), NA, @@ -479,10 +479,10 @@ taxonomic_updates: - find: Daviesia ellipticala replace: Daviesia elliptica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Cross_2009/metadata.yml b/data/Cross_2009/metadata.yml index 37eab101d..8676cc965 100644 --- a/data/Cross_2009/metadata.yml +++ b/data/Cross_2009/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c("Seed mass (mg)"), ~na_if(.x,0)), @@ -107,10 +107,10 @@ taxonomic_updates: - find: Dichelachne crinata replace: Dichelachne crinita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Crous_2013/metadata.yml b/data/Crous_2013/metadata.yml index 939f907e5..77813ff3b 100644 --- a/data/Crous_2013/metadata.yml +++ b/data/Crous_2013/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Hawkesbury Forest Experiment site", diff --git a/data/Crous_2019/metadata.yml b/data/Crous_2019/metadata.yml index 2a22cc642..944de6ae0 100644 --- a/data/Crous_2019/metadata.yml +++ b/data/Crous_2019/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Date = Date %>% dmy(), diff --git a/data/Crowley_2007/metadata.yml b/data/Crowley_2007/metadata.yml index d52596afe..c56b1ac31 100644 --- a/data/Crowley_2007/metadata.yml +++ b/data/Crowley_2007/metadata.yml @@ -133,249 +133,249 @@ taxonomic_updates: replace: Abutilon hannii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon indicum subsp. indeterminate replace: Abutilon indicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia aneura var. holey trunk (P.K.Latz 12458) replace: Acacia aneura var. Holey Trunk (P.K.Latz 12458) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia aneura var. indeterminate replace: Acacia aneura reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia coriacea subsp. sericophylla replace: Acacia coriacea subsp. sericophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia galioides var. indeterminate replace: Acacia galioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia holosericea var. glabrata replace: Acacia holosericea var. glabrata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia pallidifolia replace: Acacia pallidifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia plectocarpa subsp. indeterminate replace: Acacia plectocarpa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sutherlandii replace: Acacia sutherlandii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia tumida var. indeterminate replace: Acacia tumida reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia wickhamii subsp. indeterminate replace: Acacia wickhamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena hemilampra subsp. indeterminate replace: Acmena hemilampra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus pallidiflorus replace: Amaranthus pallidiflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus sp. Alice Springs (D.E.Albrecht 8892) replace: Amaranthus sp. Alice Springs (D.E.Albrecht 8892) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema bifurcata var. bifurcata replace: Amyema bifurcata var. bifurcata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Amyema sanguinea var. indeterminate replace: Amyema sanguinea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida biglandulosa var. indeterminate replace: Aristida biglandulosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida holathera var. indeterminate replace: Aristida holathera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asplenium sp. Nabarlek (J.Russell-Smith 3875) replace: Asplenium sp. Nabarlek (J.Russell-Smith 3875) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex vesicaria subsp. indeterminate replace: Atriplex vesicaria reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria bickertonensis replace: Beyeria bickertonensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia grandisepala subsp. indeterminate replace: Boronia grandisepala reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome ciliaris var. indeterminate replace: Brachyscome ciliaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bridelia tomentosa var. indeterminate replace: Bridelia tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buglossoides arvense replace: Buglossoides arvense reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus reticulatus var. indeterminate replace: Cajanus reticulatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus scarabaeoides var. indeterminate replace: Cajanus scarabaeoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha aurea var. candida replace: Cassytha aurea var. candida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Centipeda minima subsp. indeterminate replace: Centipeda minima reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalomanes obscurum replace: Cephalomanes obscurum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaecrista nomame var. indeterminate replace: Chamaecrista nomame reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Christella dentata var. dentata replace: Christella dentata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clausena sp. Tipperary (G.J.Leach 2152) replace: Clausena sp. Tipperary (G.J.Leach 2152) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cleome tetrandra var. indeterminate replace: Cleome tetrandra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum var. indeterminate replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cochlospermum fraseri subsp. indeterminate replace: Cochlospermum fraseri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sidoides subsp. indeterminate replace: Corchorus sidoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia confertiflora* replace: Corymbia confertiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia ferruginea subsp. indeterminate replace: Corymbia ferruginea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia grandifolia subsp. indeterminate replace: Corymbia grandifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia ptychocarpa subsp. indeterminate replace: Corymbia ptychocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia setosa subsp. indeterminate* replace: Corymbia setosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria cunninghamii subsp. indeterminate replace: Crotalaria cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria eremaea subsp. indeterminate replace: Crotalaria eremaea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria medicaginea var. indeterminate replace: Crotalaria medicaginea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria montana var. indeterminate replace: Crotalaria montana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria novae-hollandiae subsp. indeterminate replace: Crotalaria novae-hollandiae reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis melo subsp. indeterminate replace: Cucumis melo reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis melo subsp. melo replace: Cucumis melo var. melo reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cullen sp. replace: Cullen sp. [Crowley_2007] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -385,194 +385,194 @@ taxonomic_updates: replace: Curculigo ensifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyclophyllum schultzii f. indeterminate replace: Cyclophyllum schultzii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus cunninghamii subsp. indeterminate replace: Cyperus cunninghamii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus haspan subsp. indeterminate replace: Cyperus haspan reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus javanicus subsp. armstrongii replace: Cyperus javanicus subsp. armstrongii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cyperus microcephalus subsp. indeterminate replace: Cyperus microcephalus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daucus glochidiatus var. indeterminate replace: Daucus glochidiatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium muelleri var. majus replace: Desmodium muelleri var. majus reason: match_08. Automatic alignment with synonymous name in APNI (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Desmodium pycnotrichum replace: Desmodium pycnotrichum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium velutinum replace: Desmodium velutinum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichanthium sericeum subsp. indeterminate replace: Dichanthium sericeum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis beveridgei subsp. indeterminate replace: Dicrastylis beveridgei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis exsuccosa subsp. exsuccosa replace: Dicrastylis exsuccosa subsp. exsuccosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis gilesii var. indeterminate replace: Dicrastylis gilesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros cordifolia replace: Diospyros cordifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Distichostemon hispidulus var. indeterminate replace: Distichostemon hispidulus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea lanceolata var. indeterminate replace: Dodonaea lanceolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ectrosia leporina var. indeterminate replace: Ectrosia leporina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ectrosia schultzii var. indeterminate replace: Ectrosia schultzii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehretia saligna var. indeterminate replace: Ehretia saligna reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emilia sonchifolia subsp. indeterminate replace: Emilia sonchifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endospermum medullosum replace: Endospermum medullosum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. limestone (P.K.Latz 5921) replace: Eragrostis sp. Limestone (P.K.Latz 5921) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila gilesii var. gilesii replace: Eremophila gilesii subsp. gilesii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila latrobei subsp. indeterminate replace: Eremophila latrobei reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila platythamnos subsp. A80384 Mereeni replace: Eremophila platythamnos subsp. A80384 Mereeni reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila sp. Rainbow Valley (T.S.Henshall 1181) replace: Eremophila sp. Rainbow Valley (T.S.Henshall 1181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila willsii subsp. Katapata (D.E.Albrecht 6677) replace: Eremophila willsii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne glauca var. indeterminate replace: Eriachne glauca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus camaldulensis subsp. indeterminate replace: Eucalyptus camaldulensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eucentrica replace: Eucalyptus eucentrica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus microtheca var. microtheca replace: Eucalyptus microtheca var. microtheca reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus orbifolia subsp. orbifolia replace: Eucalyptus orbifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus pruinosa subsp. indeterminate replace: Eucalyptus pruinosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii subsp. drummondii replace: Euphorbia drummondii var. drummondii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euphorbia tannensis subsp. indeterminate replace: Euphorbia tannensis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Evolvulus alsinoides var. indeterminate replace: Evolvulus alsinoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus aculeata var. indeterminate replace: Ficus aculeata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus opposita var. indeterminate replace: Ficus opposita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus sp. carpentariensis (W.B.Spencer 01/Jul/11) replace: Ficus sp. [Ficus sp. carpentariensis (W.B.Spencer 01/Jul/11); Crowley_2007] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -582,304 +582,304 @@ taxonomic_updates: replace: Ficus virens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis composita replace: Fimbristylis composita reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis littoralis var. littoralis replace: Fimbristylis littoralis var. littoralis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Gardenia resinosa subsp. indeterminate replace: Gardenia resinosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycosmis sapindoides replace: Glycosmis sapindoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium diamantinensis replace: Gnaphalium diamantinensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena canescens subsp. indeterminate replace: Gomphrena canescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena diffusa subsp. indeterminate replace: Gomphrena diffusa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grahamia australiana replace: Grahamia australiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea dryandri subsp. indeterminate replace: Grevillea dryandri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea pyramidalis subsp. indeterminate replace: Grevillea pyramidalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea refracta subsp. indeterminate replace: Grevillea refracta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea lorea subsp. indeterminate replace: Hakea lorea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea var. latisepala replace: Halgania cyanea var. latisepala MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania solanacea var. indeterminate replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. indeterminate replace: Halosarcia halocnemoides reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres dentata var. flagellaris replace: Helicteres dentata var. flagellaris reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helicteres dentata var. indeterminate replace: Helicteres dentata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Darwin (S.T.Blake 16793) replace: Helicteres sp. Darwin (S.T.Blake 16793) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Glenluckie Creek (N.B.Byrnes 1280) replace: Helicteres sp. Glenluckie Creek (N.Byrnes 1280) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Kakadu (L.G.Adams 3089) replace: Helicteres sp. Kakadu (L.G.Adams 3089) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. elongate (J.Must 887) replace: Helicteres sp. elongate (J.Must 887) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. linear leaves (L.A.Craven 7854) replace: Helicteres sp. linear leaves (L.A.Craven 7854) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. many stems (G.M.Wightman 3410 replace: Helicteres sp. many stems (G.M.Wightman 3410) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia oblongata var. indeterminate replace: Hibbertia oblongata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus panduriformis var. indeterminate replace: Hibiscus panduriformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus vitifolius subsp. indeterminate replace: Hibiscus vitifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hoya australis subsp. indeterminate replace: Hoya australis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus enneaspermus subsp. indeterminate replace: Hybanthus enneaspermus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoestes floribunda var. indeterminate replace: Hypoestes floribunda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea incisa replace: Ipomoea incisa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. Stirling (P.K.Latz 10408) replace: Ipomoea sp. Stirling (P.Latz 10408) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia browniana var. indeterminate replace: Jacquemontia browniana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia paniculata var. indeterminate replace: Jacquemontia paniculata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum aemulum replace: Jasminum aemulum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum didymum subsp. indeterminate replace: Jasminum didymum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leea indica replace: Leea indica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium muelleriferdinandi replace: Lepidium muelleri-ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia sp. recurved hood (I.D.Cowie 1171) replace: Lindernia sp. Recurved hood (I.D.Cowie 1171) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia sp. showy anthers (L.A.Craven 2393) replace: Lindernia sp. Showy Anthers (L.A.Craven 2393) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea ensifolia subsp. indeterminate replace: Lindsaea ensifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona mariae subsp. indeterminate replace: Livistona mariae reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra leucocephala var. robusta replace: Lomandra leucocephala subsp. robusta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra tropica subsp. indeterminate replace: Lomandra tropica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophostemon grandiflorus subsp. indeterminate replace: Lophostemon grandiflorus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ludwigia octovalvis subsp. indeterminate replace: Ludwigia octovalvis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luisia teretifolia replace: Luisia teretifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malaxis acuminata replace: Malaxis acuminata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malaxis latifolia replace: Malaxis latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malaxis marsupichila replace: Malaxis marsupichila reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca bracteata var. hirsuta replace: Melaleuca bracteata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca cajuputi subsp. indeterminate replace: Melaleuca cajuputi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca nervosa subsp. indeterminate replace: Melaleuca nervosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sericea subsp. indeterminate replace: Melaleuca sericea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Merremia sp. Kakadu (C.R.Dunlop 5659) replace: Merremia sp. Kakadu (C.R.Dunlop 5659) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda sp. black (C.R.Dunlop 3676) replace: Morinda sp. black (C.R.Dunlop 3676) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. Gunlom (J.L.McKean 864b) replace: Mukia sp. Gunlom (J.L.McKean 864b) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murraya paniculata var. ovatifoliolata replace: Murraya paniculata var. ovatifoliolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Neptunia gracilis f. indeterminate replace: Neptunia gracilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia plicata replace: Nervilia plicata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia sp. cordata (J.Russell-Smith 7211) replace: Nervilia sp. Cordata (J.Russell-Smith 7211) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana debneyi subsp. indeterminate replace: Nicotiana debneyi reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia mitrasacmoides subsp. indeterminate replace: Oldenlandia mitrasacmoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia sp. replace: Oldenlandia sp. [Crowley_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -889,314 +889,314 @@ taxonomic_updates: replace: Panicum decompositum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pennisetum pedicellatum subsp. indeterminate replace: Pennisetum pedicellatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phaius terrestre replace: Phaius terrestre reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus hebecarpus replace: Phyllanthus hebecarpus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllodium pulchellum var. indeterminate replace: Phyllodium pulchellum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum angustifolium subsp. phillyreoides replace: Pittosporum angustifolium reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea breviflora var. indeterminate replace: Polycarpaea breviflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea corymbosa var. indeterminate replace: Polycarpaea corymbosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea longiflora var. longiflora replace: Polycarpaea longiflora var. longiflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Polygala arvensis replace: Polygala arvensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala orbicularis var. orbicularis replace: Polygala orbicularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. Kakadu (R.Collins 205) replace: Polygala sp. Kakadu (R.Collins 205) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala stenoclada var. stenosepala replace: Polygala stenoclada var. stenosepala reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pomax sp. sand dunes (P.G.Wilson 752) replace: Pomax sp. Sand dunes (P.G.Wilson 752) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca bicolor var. indeterminate replace: Portulaca bicolor reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax attenuata var. myrmecophila replace: Psydrax attenuata f. myrmecophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Pterocaulon serrulatum var. indeterminate replace: Pterocaulon serrulatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus corymbosus var. indeterminate replace: Ptilotus corymbosus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus spicatus subsp. indeterminate replace: Ptilotus spicatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea pedicellata replace: Rapanea pedicellata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rostellularia adscendens subsp. indeterminate replace: Rostellularia adscendens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salsola tragus subsp. indeterminate replace: Salsola tragus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcostemma viminale subsp. indeterminate replace: Sarcostemma viminale reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus glaucus replace: Sauropus glaucus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus sp. Port Essington (I.D.Cowie 3418) replace: Sauropus sp. Port Essington (I.D.Cowie 3418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus stenocladus subsp. indeterminate replace: Sauropus stenocladus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola browniana subsp. indeterminate replace: Scaevola browniana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola revoluta subsp. indeterminate replace: Scaevola revoluta reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio cunninghamii var. serratus replace: Senecio cunninghamii var. serratus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. indeterminate replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. sturtii replace: Senna artemisioides subsp. symonii reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna timorensis replace: Senna timorensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sesbania cannabina var. indeterminate replace: Sesbania cannabina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Siemssenia capillaris replace: Siemssenia capillaris reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce breviflora* replace: Spermacoce breviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce sp. aequabilis (K.G.Brennan 1013) replace: Spermacoce aequabilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce sp. dolichosperma (R.K.Harwood 846) replace: Spermacoce dolichosperma reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce sp. erectiloba (J.R.Clarkson 2881) replace: Spermacoce erectiloba reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stephania japonica var. indeterminate replace: Stephania japonica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium forte subsp. indeterminate replace: Syzygium forte reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarenna dallachiana var. expandens replace: Tarenna dallachiana subsp. expandens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tephrosia brachyodon var. indeterminate replace: Tephrosia brachyodon reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia filipes var. indeterminate replace: Tephrosia filipes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia rosea var. indeterminate replace: Tephrosia rosea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Barrow Creek (G.M.Chippendale 921) replace: Tephrosia sp. Barrow Creek (G.M.Chippendale 921) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. OT Station (S.T.Blake 17659) replace: Tephrosia sp. O.T. Station (S.T.Blake 17659) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. bifacialis (G.M.Chippendale 7640) replace: Tephrosia bifacialis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. carriemichelliae (C.R.Dunlop 6769) replace: Tephrosia carriemichelliae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. conduplicate (B.L.Rice 3139) replace: Tephrosia sp. Conduplicate (B.L.Rice 3139) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. crows foot (I.D.Cowie 8562) replace: Tephrosia sp. Crows foot (I.D.Cowie 8562) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. dunes (J.R.Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. ephippioides (N.B.Byrnes 65) replace: Tephrosia ephippioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. gyropoda (R.A.Perry 1723) replace: Tephrosia gyropoda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. humifusa (M.Lazarides 7765) replace: Tephrosia humifusa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. procera (G.J.Leach 2346) replace: Tephrosia procera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. valleculata (I.D.Cowie 7596) replace: Tephrosia valleculata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia latipes subsp. latipes replace: Terminalia latipes subsp. latipes reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Trachymene hispida replace: Trachymene hispida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trema tomentosa var. indeterminate replace: Trema tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema triquetra var. triquetra replace: Trianthema triquetrum var. triquetrum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trichodesma zeylanicum var. indeterminate replace: Trichodesma zeylanicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tropidia curculigoides replace: Tropidia curculigoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. replace: Typhonium sp. [Crowley_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1206,44 +1206,44 @@ taxonomic_updates: replace: Urochloa gilesii var. gilesii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Urochloa holosericea subsp. indeterminate replace: Urochloa holosericea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vernonia patula replace: Vernonia patula reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna lanceolata var. indeterminate replace: Vigna lanceolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna vexillata var. indeterminate replace: Vigna vexillata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia cunninghamii replace: Wedelia cunninghamii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon D18954 Obiri Rock replace: Xanthostemon sp. Obiri Rock (J.A.Estbergs s.n.) reason: Manual alignment with APC accepted phrase name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylopia sp. Melville Island (J.Russell-Smith 2148) replace: Xylopia sp. Melville Island (J.Russell-Smith 2148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia prostrata var. indeterminate replace: Zornia prostrata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Cunningham_1999/metadata.yml b/data/Cunningham_1999/metadata.yml index 61e7edcda..60cf29a53 100644 --- a/data/Cunningham_1999/metadata.yml +++ b/data/Cunningham_1999/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_dry_matter_content = (1-`Potential hydration (proportion)`), @@ -692,12 +692,12 @@ taxonomic_updates: - find: Grevillea hueglii replace: Grevillea huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio lautus maratimus replace: Senecio lautus subsp. maritimus reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: Sclerification (proportion); cell cross-sectional areas; essential diff --git a/data/Curran_2009/metadata.yml b/data/Curran_2009/metadata.yml index 80b83b865..d41e536dc 100644 --- a/data/Curran_2009/metadata.yml +++ b/data/Curran_2009/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( stomatal_conductance_per_area_ambient = `gs (stomatal conductance, cm.s-1)`*10*38.97, @@ -313,6 +313,6 @@ taxonomic_updates: - find: Elaeodendron australe var. integrifolia replace: Elaeodendron australe var. integrifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Curtis_2012/metadata.yml b/data/Curtis_2012/metadata.yml index c49f55c11..e022b55de 100644 --- a/data/Curtis_2012/metadata.yml +++ b/data/Curtis_2012/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_dry_matter_content = `Leaf dry weight (petiole attached)`/`Leaf wet weight (petiole attached)`) %>% @@ -342,24 +342,24 @@ taxonomic_updates: replace: Dodonaea viscosa var. spathulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus camaldulensis ssp. Obtusa replace: Eucalyptus camaldulensis subsp. obtusa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Portulaca oleraceae replace: Portulaca oleracea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio sp. (aff. Cunnighammii) replace: Senecio sp. aff. cunninghamii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sturtii replace: Senna artemisioides subsp. x sturtii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Detombeur_2021/metadata.yml b/data/Detombeur_2021/metadata.yml index e7a9cc6c4..28d5fc2f3 100644 --- a/data/Detombeur_2021/metadata.yml +++ b/data/Detombeur_2021/metadata.yml @@ -453,7 +453,7 @@ taxonomic_updates: - find: Conostylis crassinervia subsp. absens replace: Conostylis crassinerva subsp. absens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: query: Note to update reference information and include DOI once available. diff --git a/data/Dong_2017/metadata.yml b/data/Dong_2017/metadata.yml index 6dd0403f1..1f26f325a 100644 --- a/data/Dong_2017/metadata.yml +++ b/data/Dong_2017/metadata.yml @@ -39,7 +39,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(Species != "decurrens/ heliosperma") %>% group_by(Genus_species) %>% @@ -512,83 +512,79 @@ substitutions: find: 'yes' replace: nitrogen_fixer taxonomic_updates: -- find: Acacia sp. - replace: Acacia sp. [Dong_2017] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corymbia sp. - replace: Corymbia sp. [Dong_2017] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Fabaceae sp. - replace: Fabaceae sp. [Dong_2017] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Watsonia sp. - replace: Watsonia sp. [Dong_2017] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia contriva replace: Acacia continua reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia dimidata replace: Acacia dimidiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. + replace: Acacia sp. [Dong_2017] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Corymbia sp. + replace: Corymbia sp. [Dong_2017] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dianella revoluta subsp.revoluta replace: Dianella revoluta var. revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea viscosa cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila macdonnellii form small hairy replace: Eremophila macdonnellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila macdonnellii form white woolly replace: Eremophila macdonnellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila macdonnellii form white wooly replace: Eremophila macdonnellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Fabaceae sp. + replace: Fabaceae sp. [Dong_2017] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Lysiana exocarpi f. exocarpi replace: Lysiana exocarpi subsp. exocarpi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Parinaria nonda replace: Parinari nonda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Perssonia falcata replace: Persoonia falcata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus obovatus subsp. obovatus replace: Ptilotus obovatus var. obovatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus obovatus subsp. obovatus replace: Ptilotus obovatus var. obovatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rhagodia paradoxa replace: Rhagodia parabolica reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. (poss. amblyanthera) replace: Scaevola sp. [Scaevola sp. (poss. amblyanthera); Dong_2017] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -598,27 +594,27 @@ taxonomic_updates: replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies -- find: Senna artemisioides ssp. artemisioides - replace: Senna artemisioides subsp. x artemisioides - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides ssp. Filifolia replace: Senna artemisioides subsp. filifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Senna artemisioides ssp. artemisioides + replace: Senna artemisioides subsp. x artemisioides + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-12) + taxonomic_resolution: subspecies - find: Senna artemisioides ssp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. sturtii x coriacea replace: Senna x [Senna artemisioides subsp. sturtii x coriacea; Dong_2017] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -628,12 +624,16 @@ taxonomic_updates: replace: Sida sp. Supplejack Station (T.S.Henshall 2345) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Macarthur river replace: Tephrosia sp. [Tephrosia sp. Macarthur river; Dong_2017] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Watsonia sp. + replace: Watsonia sp. [Dong_2017] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: additional_traits: There is additional data in Dong_2020 that Ning will make available diff --git a/data/Draper_2023/metadata.yml b/data/Draper_2023/metadata.yml index b2cf26d79..e3efd67d5 100644 --- a/data/Draper_2023/metadata.yml +++ b/data/Draper_2023/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Date = Date %>% mdy, @@ -211,265 +211,265 @@ taxonomic_updates: - find: Acacia agyrophylla replace: Acacia argyrophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia anuera replace: Acacia aneura reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia basedownii replace: Acacia basedowii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia eriacea replace: Acacia erinacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia georgei replace: Acacia georgensis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia glanculicarpa replace: Acacia glandulicarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia liguata replace: Acacia ligulata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia rehetinocarpa replace: Acacia rhetinocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia simmonsianna replace: Acacia simmonsiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia whilhelmiana replace: Acacia wilhelmiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Achianthus caudatus replace: Acianthus caudatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Achianthus pusillus replace: Acianthus pusillus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alisma plantago-aquatifa replace: Alisma plantago-aquatica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Althernantera angustifolia replace: Alternanthera angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne hugelii replace: Alyogyne huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus mtchellii replace: Amaranthus mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amphibromus nneesii replace: Amphibromus neesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amphibromus pithogastrum replace: Amphibromus pithogastrus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema hiliana replace: Amyema hilliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthosachne recitseta replace: Anthosachne rectiseta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus spinescens replace: Aotus subspinescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asteridea athrixiuides replace: Asteridea athrixioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriples nessorhina replace: Atriplex nessorhina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa nitidula replace: Austrostipa nitida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrotipa pilata replace: Austrostipa pilata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bannksia marginata replace: Banksia marginata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea articulata replace: Bassia articulata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia burbigeana replace: Boerhavia burbidgeana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea penisularis replace: Bossiaea peninsularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia calavula replace: Caladenia clavula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia calicola replace: Caladenia calcicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia macrocalvia replace: Caladenia macroclavia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia spaherophylla replace: Calandrinia sphaerophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calostema purpureum replace: Calostemma purpureum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis multicauliis replace: Calotis multicaulis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex breviculumis replace: Carex breviculmis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassyntha pubescens replace: Cassytha pubescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha filndersii replace: Cassytha flindersii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysocephalum vitelliunum replace: Chrysocephalum vitellinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus microcepalus replace: Convolvulus microsepalus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coodenia cycloptera replace: Goodenia cycloptera reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria cunninghanii replace: Crotalaria cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cuphonotus andreanus replace: Cuphonotus andraeanus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sangiunolentus replace: Cyperus sanguinolentus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dactylotenium radulans replace: Dactyloctenium radulans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplata grandibractea replace: Diplatia grandibractea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplodium campanulatum replace: Dipodium campanulatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplodium pardalinum replace: Dipodium pardalinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplodium punctatum replace: Dipodium punctatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplodium roseum replace: Dipodium roseum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris calicola replace: Diuris calcicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris orientalis replace: Diuris orientis reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea microgyza replace: Dodonaea microzyga reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphaia glomulifera replace: Dysphania glomulifera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinopogon ceaspitosus replace: Echinopogon caespitosus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Embadium unncinatum replace: Embadium uncinatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon caerulenscens replace: Enneapogon caerulescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila bigoniiflora replace: Eremophila bignoniiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila hilii replace: Eremophila hillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erichne pulchella replace: Eriachne pulchella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalpytus glomerosa replace: Eucalyptus glomerosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalpytus intertexta replace: Eucalyptus intertexta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalypptus omissa replace: Eucalyptus omissa reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus cajuptea replace: Eucalyptus cajuputea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dillii replace: Eucalyptus sp. [Eucalyptus dillii; Draper_2023] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -478,23 +478,23 @@ taxonomic_updates: - find: Eucalyptus largiforens replace: Eucalyptus largiflorens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptys brachycalyx replace: Eucalyptus brachycalyx reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eurychroda complanata replace: Eurychorda complanata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxxia diffusa replace: Eutaxia diffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbrisylis microcarya replace: Fimbristylis microcarya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrodia paludosus replace: Gastrodia sp. [Gastrodia paludosus; Draper_2023] reason: Rewording name to be recognised as genus rank, with genus accepted by APC; @@ -503,372 +503,372 @@ taxonomic_updates: - find: Glinis oppositifolius replace: Glinus oppositifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glossadenia tutelata replace: Glossodia x tutelata reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Glossodia x tutelata + replace: Glossodia x tutelata + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) + taxonomic_resolution: species - find: Gomphologium ecostatum replace: Gompholobium ecostatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia connata replace: Goodenia crenata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia glabrata replace: Goodenia glabra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia muckeana replace: Goodenia mueckeana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossypium stuartianum replace: Gossypium sturtianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea hugelii replace: Grevillea huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haeckeria cassiniiformia replace: Haeckeria cassiniiformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helichrycum leucopsideum replace: Helichrysum leucopsideum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus aurentiacus replace: Hybanthus aurantiacus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilma eremaeum replace: Iseilema eremaeum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilma membranaceum replace: Iseilema membranaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilma vaginiflorum replace: Iseilema vaginiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma patraea replace: Isotoma petraea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus flockei replace: Juncus fockei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus paucifolius replace: Juncus pauciflorus reason: manual match to most likely name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagenophota stipitata replace: Lagenophora stipitata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum tepperi replace: Lasiopetalum x tepperi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium pseudooruderale replace: Lepidium pseudoruderale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidopserma curtisiae replace: Lepidosperma curtisiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidopserma gahnioides replace: Lepidosperma gahnioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidopserma laterale replace: Lepidosperma laterale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidopserma longitudinale replace: Lepidosperma longitudinale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Levenhoookia sonderi replace: Levenhookia sonderi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca fauicola replace: Melaleuca faucicola reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca flugens replace: Melaleuca fulgens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcyrtus ciliata replace: Micromyrtus ciliata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirianthis bigoniaceus replace: Marianthus bignoniaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia languinosa replace: Olearia lanuginosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opercularis ovata replace: Opercularia ovata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxychloris munroi replace: Neurachne munroi reason: manual match to most likely name; same epithet and same family, but different genus (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothanmus pholidotus replace: Ozothamnus pholidotus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pellargonium rodneyanum replace: Pelargonium rodneyanum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium bulllatum replace: Phebalium bullatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ploycalymma stuartii replace: Polycalymma stuartii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea dentax replace: Pluchea dentex reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa ubmricola replace: Poa umbricola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygonum plebium replace: Polygonum plebeium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderis halmaturina replace: Pomaderris halmaturina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderis obcordata replace: Pomaderris obcordata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderis paniculosa replace: Pomaderris paniculosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderis racemosa replace: Pomaderris racemosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum calicola replace: Prasophyllum calcicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum rotundiforum replace: Prasophyllum rotundiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera ammohila replace: Prostanthera ammophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis excelssa replace: Pterostylis excelsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis pertosus replace: Pterostylis petrosa reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis psammophla replace: Pterostylis psammophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilostus angustifolius replace: Ptilotus angustifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilostus aristatus replace: Ptilotus aristatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus eichleranus replace: Ptilotus eichlerianus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus pseudoheliperoides replace: Ptilotus pseudohelipteroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea tenna replace: Pultenaea penna reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rannunculus glabrifolius replace: Ranunculus glabrifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodante microglossa replace: Rhodanthe microglossa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhyncharrhena lineare replace: Rhyncharrhena linearis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhytodisperma procumbens replace: Rhytidosporum procumbens reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Roepera iodicarpa replace: Roepera iodocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma reobertsoniae replace: Rytidosperma robertsoniae reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemidioides replace: Senna artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sepecio squarrosus replace: Senecio squarrosus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum pterophilum replace: Solanum petrophilum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus blackei replace: Sporobolus blakei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus michellii replace: Sporobolus mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium subchreatum replace: Spyridium subochreatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenantherum notiale replace: Stenanthemum notiale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Steucrium teucriiflorum replace: Teucrium teucriiflorum reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Streptoglossa laitroides replace: Streptoglossa liatroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona microcphylla replace: Swainsona microphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona munitiflora replace: Swainsona minutiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaptantha tileaecea replace: Synaptantha tillaeacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia doleiformis replace: Tecticornia doliiformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thamasia petalocalyx replace: Thomasia petalocalyx reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra chasmogama replace: Thelymitra x chasmogama reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra flexulosa replace: Thelymitra flexuosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra latifola replace: Thelymitra latifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra megacalyptra replace: Thelymitra megcalyptra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thrymptomene ericaea replace: Thryptomene ericaea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thrymtomene calycina replace: Thryptomene calycina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene eurceolaris replace: Thryptomene urceolaris reason: manual match to correct name (E. Wenk 2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trialium wayi replace: Trymalium wayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichodesma zaulanicum replace: Trichodesma zeylanicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa pratervisa replace: Urochloa praetervisa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica plebia replace: Veronica plebeia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wesstringia rigida replace: Westringia rigida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosa huegelii replace: Xanthosia huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosa leiophylla replace: Xanthosia leiophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosa tasmanica replace: Xanthosia tasmanica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-08) - taxonomic_resolution: Species -- find: Glossodia x tutelata - replace: Glossodia x tutelata - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-08) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Duan_2015/metadata.yml b/data/Duan_2015/metadata.yml index 4dc746a40..08b678b2b 100644 --- a/data/Duan_2015/metadata.yml +++ b/data/Duan_2015/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site = "University of Western Sydney", diff --git a/data/Duncan_1998/metadata.yml b/data/Duncan_1998/metadata.yml index 6957fbf08..1a9f8fc2d 100644 --- a/data/Duncan_1998/metadata.yml +++ b/data/Duncan_1998/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(`genus spp (ian)`) %>% mutate(across(c(ps_path, stom_dis), replace_duplicates_with_NA)) %>% @@ -508,14 +508,10 @@ substitutions: find: epistomatous replace: epistomatic taxonomic_updates: -- find: Melaleuca sp - replace: Melaleuca sp. [Duncan_1998] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Eucalyptus eugenoides replace: Eucalyptus eugenioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp replace: Gahnia sp. [Duncan_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -524,6 +520,10 @@ taxonomic_updates: - find: Grevillea hueglii replace: Grevillea huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Melaleuca sp + replace: Melaleuca sp. [Duncan_1998] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Dwyer_2017/metadata.yml b/data/Dwyer_2017/metadata.yml index a049693ac..225ed187f 100644 --- a/data/Dwyer_2017/metadata.yml +++ b/data/Dwyer_2017/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(species, remnant) %>% mutate( @@ -239,15 +239,15 @@ traits: increase SLA values.) substitutions: .na taxonomic_updates: -- find: Caladenia sp - replace: Caladenia sp. [Dwyer_2017] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Austrostipa sp3 replace: Austrostipa sp. [Austrostipa sp3; Dwyer_2017] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Caladenia sp + replace: Caladenia sp. [Dwyer_2017] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Centrolepis sp replace: Centrolepis sp. [Dwyer_2017] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -267,7 +267,7 @@ taxonomic_updates: replace: Hyalosperma glutinosum subsp. venustum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Orchidaceae sp replace: Orchidaceae sp. [Dwyer_2017] reason: match_02. Rewording taxon with ending with `sp.` to indicate a family-level @@ -331,7 +331,7 @@ taxonomic_updates: - find: Wurmbea spPaynes Find replace: Wurmbea sp. Paynes Find (C.J.French 1237) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: unk sp1, unk sp12, unk sp13, unk sp2, unk sp3, unk sp5, unk sp7, unk sp9 diff --git a/data/Dwyer_2018/metadata.yml b/data/Dwyer_2018/metadata.yml index d933e8350..a26af30d4 100644 --- a/data/Dwyer_2018/metadata.yml +++ b/data/Dwyer_2018/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( individual_plant = paste(species, Ind_ID, sep = "_") @@ -119,6 +119,6 @@ taxonomic_updates: - find: Eremophila mitchelii replace: Eremophila mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Eamus_2000/metadata.yml b/data/Eamus_2000/metadata.yml index 1bcd8cc6a..4f1c8a298 100644 --- a/data/Eamus_2000/metadata.yml +++ b/data/Eamus_2000/metadata.yml @@ -143,6 +143,6 @@ taxonomic_updates: - find: Eucalyptus spp. replace: Eucalyptus sp. [Eamus_2000] reason: Add dataset_id to genus-level resolution (E. Wenk, 2023-06-28) - taxonomic_resolution: Genus + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Edwards_2000/metadata.yml b/data/Edwards_2000/metadata.yml index fe260d98e..fbe4673d3 100644 --- a/data/Edwards_2000/metadata.yml +++ b/data/Edwards_2000/metadata.yml @@ -42,7 +42,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `work_to_punch_x102_J/m2` = ifelse(`name_original` %in% c("Goodenia ovata","Bedfordia arborescens"), NA, `work_to_punch_x102_J/m2`), @@ -646,12 +646,12 @@ taxonomic_updates: replace: Banksia marginata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia marginata heath replace: Banksia marginata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: there are also various measures of leaf strength, measured through diff --git a/data/Ellsworth_2015/metadata.yml b/data/Ellsworth_2015/metadata.yml index a77d62b88..1d1cd4ca5 100644 --- a/data/Ellsworth_2015/metadata.yml +++ b/data/Ellsworth_2015/metadata.yml @@ -35,7 +35,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Species = stringr::str_replace(Species, "_", " "), @@ -1193,7 +1193,7 @@ taxonomic_updates: - find: Syncarpia glomifera replace: Syncarpia glomulifera reason: manual change to correct typo (E. Wenk 2023-05-01) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf inorganic P diff --git a/data/Enright_2014/metadata.yml b/data/Enright_2014/metadata.yml index 012228123..faac0c761 100644 --- a/data/Enright_2014/metadata.yml +++ b/data/Enright_2014/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(taxon_name) %>% mutate( @@ -93,8 +93,8 @@ locations: winter rain after experimental fire (mm): 41.3 winter rain one year before experimental fire (mm): 428.6 winter rain two years before experimental fire (mm): 410.3 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_BS07: site code: BS07 latitude (deg): -29.4511726 @@ -110,8 +110,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_CL08: site code: CL08 latitude (deg): -29.8577836 @@ -127,8 +127,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_CN07: site code: CN07 latitude (deg): -29.8702705 @@ -144,8 +144,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_CN08: site code: CN08 latitude (deg): -29.8696269 @@ -161,8 +161,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_DC07: site code: DC07 latitude (deg): -30.2633881 @@ -178,8 +178,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_DH07: site code: DH07 latitude (deg): -29.8728186 @@ -195,8 +195,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_DH08: site code: DH08 latitude (deg): -29.8735174 @@ -212,8 +212,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_DH09: site code: DH09 latitude (deg): -29.8732382 @@ -229,8 +229,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_DHN09: site code: DHN09 latitude (deg): -29.8650086 @@ -246,8 +246,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_LN07: site code: LN07 latitude (deg): -30.0549791 @@ -263,8 +263,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_LN08: site code: LN08 latitude (deg): -30.0538192 @@ -280,8 +280,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_LN09: site code: LN09 latitude (deg): -30.0557346 @@ -297,8 +297,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_MAC08: site code: MAC08 latitude (deg): -29.4030024 @@ -314,8 +314,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_MAS08: site code: MAS08 latitude (deg): -29.4082236 @@ -331,8 +331,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_MAT07: site code: MAT07 latitude (deg): -29.4009227 @@ -348,8 +348,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_MAX07: site code: MAX07 latitude (deg): -29.4055891 @@ -365,8 +365,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_MP08: site code: MP08 latitude (deg): -29.7558956 @@ -382,8 +382,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_OC07: site code: OC07 latitude (deg): -29.601723 @@ -399,8 +399,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_PT07: site code: PT07 latitude (deg): -29.9069645 @@ -416,8 +416,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_PT08: site code: PT08 latitude (deg): -29.906248 @@ -433,8 +433,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_RRX07: site code: RRX07 latitude (deg): -29.7267258 @@ -450,8 +450,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_SEC06: site code: SEC06 latitude (deg): -29.8710238 @@ -467,8 +467,8 @@ locations: winter rain after experimental fire (mm): 41.3 winter rain one year before experimental fire (mm): 428.6 winter rain two years before experimental fire (mm): 410.3 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_SEC07: site code: SEC07 latitude (deg): -29.8728001 @@ -484,8 +484,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_SES06: site code: SES06 latitude (deg): -29.8727675 @@ -501,8 +501,8 @@ locations: winter rain after experimental fire (mm): 41.3 winter rain one year before experimental fire (mm): 428.6 winter rain two years before experimental fire (mm): 410.3 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_SKC06: site code: SKC06 latitude (deg): -29.6433629 @@ -518,8 +518,8 @@ locations: winter rain after experimental fire (mm): 41.3 winter rain one year before experimental fire (mm): 428.6 winter rain two years before experimental fire (mm): 410.3 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_SKS07: site code: SKS07 latitude (deg): -29.6415579 @@ -535,8 +535,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_TT07: site code: TT07 latitude (deg): -29.9783293 @@ -552,8 +552,8 @@ locations: winter rain after experimental fire (mm): 126.2 winter rain one year before experimental fire (mm): 271.1 winter rain two years before experimental fire (mm): 428.6 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_TT08: site code: TT08 latitude (deg): -29.9781163 @@ -569,8 +569,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_TT09e: site code: TT09e latitude (deg): -29.9768224 @@ -586,8 +586,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_TT09s: site code: TT09s latitude (deg): -29.9789961 @@ -603,8 +603,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_TT09w: site code: TT09w latitude (deg): -29.9778912 @@ -620,8 +620,8 @@ locations: winter rain after experimental fire (mm): 52.9 winter rain one year before experimental fire (mm): 363.5 winter rain two years before experimental fire (mm): 352.5 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA Geraldton Sandplain_WS08: site code: WS08 latitude (deg): -29.8226447 @@ -637,8 +637,8 @@ locations: winter rain after experimental fire (mm): 6.5 winter rain one year before experimental fire (mm): 352.5 winter rain two years before experimental fire (mm): 271.1 - description: Mediterranean-type shrublands (kwongan) of the Geraldton - Sandplain region of SWA + description: Mediterranean-type shrublands (kwongan) of the Geraldton Sandplain + region of SWA contexts: .na traits: - var_in: soilCanopy @@ -719,79 +719,79 @@ taxonomic_updates: - find: Calytrix sp. replace: Calytrix sp. [Calytrix; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus -- find: Cryptandra sp. - replace: Cryptandra sp. [Cryptandra; Enright_2014] - reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Cryptandra or Mirbelia sp. replace: Rhamnaceae sp. [Cryptandra or Mirbelia sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Family + taxonomic_resolution: family +- find: Cryptandra sp. + replace: Cryptandra sp. [Cryptandra; Enright_2014] + reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). + taxonomic_resolution: genus - find: Daviesia sp. replace: Daviesia sp. [Daviesia sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Eremea violacea + replace: Eremaea violacea + reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). + taxonomic_resolution: species - find: Grevillea sp. replace: Grevillea sp. [Grevillea sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Hypocalymma sp. replace: Hypocalymma sp. [Hypocalymma sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Leucopogon sp. Arrowsmith replace: Leucopogon inflexus reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bifid Eneabba replace: Styphelia filamentosa reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Murdoch replace: Styphelia filifolia reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Northern ciliate replace: Leucopogon sp. Northern ciliate (R.Davis 3393) WA Herbarium reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. South Eneabba replace: Leucopogon prolatus reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. lesueur replace: Leucopogon stenophyllus reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania sp. replace: Logania sp. [Logania sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Melaleuca scabrum replace: Melaleuca scabra reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. replace: Olearia sp. [Olearia sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Pimelea sp. replace: Pimelea sp. [Pimelea sp.; Enright_2014] reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus -- find: Verticordia sp. - replace: Verticordia sp. [Verticordia sp.; Enright_2014] - reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Verticordia monodelpha replace: Verticordia monadelpha reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species -- find: Eremea violacea - replace: Eremaea violacea - reason: Align to currently accepted name on APC (E. Wenk, 2023-05-22). - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Verticordia sp. + replace: Verticordia sp. [Verticordia sp.; Enright_2014] + reason: Re-word genus name to include link to dataset (E. Wenk, 2023-05-22). + taxonomic_resolution: genus exclude_observations: - variable: taxon_name find: unkGen sp. diff --git a/data/EsperonRodriguez_2019/metadata.yml b/data/EsperonRodriguez_2019/metadata.yml index 141afe632..d04d9dc36 100644 --- a/data/EsperonRodriguez_2019/metadata.yml +++ b/data/EsperonRodriguez_2019/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% rename( `Midday_leaf_water_potential (Mpa)` = `_w (Mpa)`, diff --git a/data/Everingham_2020/metadata.yml b/data/Everingham_2020/metadata.yml index f9542dce2..e94619114 100644 --- a/data/Everingham_2020/metadata.yml +++ b/data/Everingham_2020/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( root_mass_fraction = `Root (g)`/`Totalplant`, stem_mass_fraction = `Totalshoot (g)`/Totalplant, @@ -719,10 +719,10 @@ taxonomic_updates: - find: Callitris endlicherii replace: Callitris endlicheri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus nichollii replace: Eucalyptus nicholii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Falster_2003/metadata.yml b/data/Falster_2003/metadata.yml index fcecb57dc..e1e06bee7 100644 --- a/data/Falster_2003/metadata.yml +++ b/data/Falster_2003/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = ifelse(`Site LAI`=="Low","Ku-ring-gai + custom_R_code: data %>% mutate(site_name = ifelse(`Site LAI`=="Low","Ku-ring-gai Chase National Park low nutrient","Ku-ring-gai Chase National Park high nutrient")) collection_date: 2000/2001 taxon_name: Species @@ -301,10 +301,10 @@ taxonomic_updates: - find: Leptospermum spp replace: Leptospermum sp. [Falster_2003] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Lomatia siliafolia replace: Lomatia silaifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Falster_2005_1/metadata.yml b/data/Falster_2005_1/metadata.yml index f0f2747e6..a4661a765 100644 --- a/data/Falster_2005_1/metadata.yml +++ b/data/Falster_2005_1/metadata.yml @@ -323,14 +323,14 @@ taxonomic_updates: replace: Haplostichanthus sp. (Cooper Creek BG 2433) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria sp Utchee Creek replace: Psychotria sp. (Utchee Creek) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Falster_2005_2/metadata.yml b/data/Falster_2005_2/metadata.yml index e036db9db..2a530bae3 100644 --- a/data/Falster_2005_2/metadata.yml +++ b/data/Falster_2005_2/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(`regeneration strategy` = ifelse(species == "Banksia serrata", "fire_killed resprouts", `regeneration strategy`))%>% group_by(species) %>% @@ -354,10 +354,10 @@ taxonomic_updates: - find: Pomax umbellate replace: Pomax umbellata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ricinocarpus pinnifolius replace: Ricinocarpos pinifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Farrell_2012/metadata.yml b/data/Farrell_2012/metadata.yml index c2d40a096..03c498519 100644 --- a/data/Farrell_2012/metadata.yml +++ b/data/Farrell_2012/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(plant_succulence = plant_growth_form) + custom_R_code: data %>% mutate(plant_succulence = plant_growth_form) collection_date: 2011-01/2011-06 taxon_name: Species location_name: site @@ -143,6 +143,6 @@ taxonomic_updates: - find: Carprotus modestus replace: Carpobrotus modestus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Farrell_2013/metadata.yml b/data/Farrell_2013/metadata.yml index 54c0a5c64..f65566f2b 100644 --- a/data/Farrell_2013/metadata.yml +++ b/data/Farrell_2013/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(everything(), ~as.character(.x)), diff --git a/data/Farrell_2017/metadata.yml b/data/Farrell_2017/metadata.yml index 482da5551..18b7c4559 100644 --- a/data/Farrell_2017/metadata.yml +++ b/data/Farrell_2017/metadata.yml @@ -271,19 +271,19 @@ taxonomic_updates: - find: Pelagonium rodneyanum replace: Pelargonium rodneyanum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosthanthera nivea replace: Prostanthera nivea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna nemophila replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Stylidium graminifolia replace: Stylidium graminifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Firn_2019/metadata.yml b/data/Firn_2019/metadata.yml index f38b1cf95..b7427d937 100644 --- a/data/Firn_2019/metadata.yml +++ b/data/Firn_2019/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( trt = ifelse(trt == "N", "nitrogen",trt), @@ -249,15 +249,15 @@ substitutions: find: legume replace: herb taxonomic_updates: -- find: Rytidosperma sp. - replace: Rytidosperma sp. [Firn_2019] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Hordeum murinum ssp. Leporinum replace: Hordeum murinum subsp. leporinum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Rytidosperma sp. + replace: Rytidosperma sp. [Firn_2019] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Stipa sp. replace: Stipa sp. [Firn_2019] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -267,6 +267,6 @@ taxonomic_updates: replace: Trachymene humilis subsp. breviscapa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Fonseca_2000/metadata.yml b/data/Fonseca_2000/metadata.yml index 3c408d85f..f0eee417b 100644 --- a/data/Fonseca_2000/metadata.yml +++ b/data/Fonseca_2000/metadata.yml @@ -38,7 +38,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(across(c(`TRAIT Leaf Dry Mass UNITS g`), ~na_if(.x,0))) %>% group_by(name_original) %>% @@ -719,34 +719,6 @@ substitutions: find: F replace: fern taxonomic_updates: -- find: Dianella sp - replace: Dianella sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Euodia sp - replace: Euodia sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Goodenia sp - replace: Goodenia sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepidium sp - replace: Lepidium sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptospermum sp - replace: Leptospermum sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Marsilea sp - replace: Marsilea sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zygophyllum sp - replace: Zygophyllum sp. [Fonseca_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia brownii/ulicifolia replace: Acacia sp. [Acacia brownii/ulicifolia; Fonseca_2000] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -755,7 +727,7 @@ taxonomic_updates: - find: Acacia burkitti replace: Acacia burkittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cheelii/melanoxylon replace: Acacia sp. [Acacia cheelii/melanoxylon; Fonseca_2000] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -769,7 +741,7 @@ taxonomic_updates: - find: Alectryon oleifolium replace: Alectryon oleifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina sp replace: Allocasuarina sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -779,7 +751,7 @@ taxonomic_updates: replace: Amyema pendulum subsp. pendulum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Amyema sp replace: Amyema sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -804,7 +776,7 @@ taxonomic_updates: replace: Banksia spinulosa var. collina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachyloma sp replace: Brachyloma sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -823,7 +795,7 @@ taxonomic_updates: - find: Cephalaria cephalobotrys replace: Cephalaralia cephalobotrys reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodiaceae sp replace: Chenopodiaceae sp. [Fonseca_2000] reason: match_02. Rewording taxon with ending with `sp.` to indicate a family-level @@ -833,7 +805,7 @@ taxonomic_updates: replace: Chenopodium desertorum subsp. anidiophyllum reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium sp replace: Chenopodium sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -848,7 +820,7 @@ taxonomic_updates: replace: Conospermum longifolium subsp. longifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cryptocarya microneura/glaucescens replace: Cryptocarya sp. [Cryptocarya microneura/glaucescens; Fonseca_2000] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -869,6 +841,10 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Dianella sp + replace: Dianella sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Digitaria sp replace: Digitaria sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -878,7 +854,7 @@ taxonomic_updates: replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Echinopogon sp replace: Echinopogon sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -899,11 +875,19 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Euodia sp + replace: Euodia sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Fabaceae sp replace: Fabaceae sp. [Fonseca_2000] reason: match_02. Rewording taxon with ending with `sp.` to indicate a family-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: family +- find: Goodenia sp + replace: Goodenia sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Heliotropium sp replace: Heliotropium sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -914,6 +898,14 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Lepidium sp + replace: Lepidium sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptospermum sp + replace: Leptospermum sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leucopogon sp replace: Leucopogon sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -939,6 +931,10 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Marsilea sp + replace: Marsilea sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Medicago sp replace: Medicago sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -952,12 +948,12 @@ taxonomic_updates: - find: Parsonsia sp.A replace: Parsonsia sp. A reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Patersonia sericea longifolia replace: Patersonia sericea var. longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Phyllota sp replace: Phyllota sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -981,7 +977,7 @@ taxonomic_updates: - find: Ptilanthelium deusteum replace: Ptilanthelium deustum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp replace: Pultenaea sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -990,7 +986,7 @@ taxonomic_updates: - find: Sclerolaena quinquecuspis replace: Bassia quinquecuspis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp replace: Sclerolaena sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1000,17 +996,17 @@ taxonomic_updates: replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides zygophylla replace: Senna artemisioides subsp. zygophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sida limestone replace: Sida sp. limestone (D.E.Albrecht 5748) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp replace: Sida sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1030,7 +1026,7 @@ taxonomic_updates: replace: Tabernaemontana orientalis var. angustisepala reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Vittadinia sp replace: Vittadinia sp. [Fonseca_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1041,6 +1037,10 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Zygophyllum sp + replace: Zygophyllum sp. [Fonseca_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: - variable: taxon_name find: unk10_1 sp, unk10_1a sp, unk12_1a sp, unk12_1b sp, unk12_1c sp, unk13_1 sp, diff --git a/data/French_2017/metadata.yml b/data/French_2017/metadata.yml index e655db694..8c050b957 100644 --- a/data/French_2017/metadata.yml +++ b/data/French_2017/metadata.yml @@ -36,7 +36,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( resprouting_capacity = @@ -196,7 +196,7 @@ taxonomic_updates: - find: Baekia leptocaulis replace: Baeckea leptocaulis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia species replace: Boronia sp. [Boronia species; French_2017] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/Funk_2016/metadata.yml b/data/Funk_2016/metadata.yml index 9b7b30e6e..eeaf603f6 100644 --- a/data/Funk_2016/metadata.yml +++ b/data/Funk_2016/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `Nut acq strat` = stringr::str_replace(`Nut acq strat`, "Nfixer/",""), @@ -365,19 +365,19 @@ taxonomic_updates: - find: Angiozanthos manglesii replace: Anigozanthos manglesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia attenuta replace: Banksia attenuata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia callophylla replace: Corymbia calophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea preissi replace: Xanthorrhoea preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: root depth diff --git a/data/Gallagher_2012/metadata.yml b/data/Gallagher_2012/metadata.yml index 229f6642a..8c7fe4523 100644 --- a/data/Gallagher_2012/metadata.yml +++ b/data/Gallagher_2012/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( remarks_for_SLA = ifelse(!(is.na(`SLA (mm2/mg)`)), diff --git a/data/Gallagher_2015/metadata.yml b/data/Gallagher_2015/metadata.yml index 24e7d44fc..ec5fa6ee0 100644 --- a/data/Gallagher_2015/metadata.yml +++ b/data/Gallagher_2015/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site = "Currency Creek Arboretum") %>% rename(measurement_remarks = context) + custom_R_code: data %>% mutate(site = "Currency Creek Arboretum") %>% rename(measurement_remarks = context) collection_date: 2015/2015 taxon_name: species_name location_name: site @@ -63,177 +63,182 @@ taxonomic_updates: - find: Corymbia leichhardii replace: Corymbia leichhardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aridomontana replace: Eucalyptus aridimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus astringens subsp. redacta (pink form) replace: Eucalyptus astringens subsp. redacta reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus beyeri replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus biterrainea replace: Eucalyptus biterranea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus bupestrium replace: Eucalyptus buprestium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus caesia subsp. 'Boyagin' replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus caesia subsp. 'Southern' + taxonomic_resolution: species +- find: Eucalyptus caesia subsp. 'Southern rocks' replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus caesia subsp. 'Southern rocks' + taxonomic_resolution: species +- find: Eucalyptus caesia subsp. 'Southern' replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus calycogona subsp. miracula replace: Eucalyptus calycogona subsp. miraculum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus concinna (small fruit form) replace: Eucalyptus concinna reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dalrympleana subsp. 'Alpine' replace: Eucalyptus dalrympleana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus dalrympleana subsp. Tasmania + taxonomic_resolution: species +- find: Eucalyptus dalrympleana subsp. 'Tasmania' replace: Eucalyptus dalrympleana subsp. Tasmania (Nicolle 4923) reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies -- find: Eucalyptus dalrympleana subsp. 'Tasmania' + taxonomic_resolution: subspecies +- find: Eucalyptus dalrympleana subsp. Tasmania replace: Eucalyptus dalrympleana subsp. Tasmania (Nicolle 4923) reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus dalrympleana subsp. Tasmania (Nicolle 4923) replace: Eucalyptus dalrympleana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus grandis subsp. 'grandis' - replace: Eucalyptus grandis var. grandis - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Eucalyptus grandis subsp. 'North Qld' replace: Eucalyptus grandis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus horistes subsp. 'horistes' + taxonomic_resolution: species +- find: Eucalyptus grandis subsp. 'grandis' + replace: Eucalyptus grandis var. grandis + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: varietas +- find: Eucalyptus horistes subsp. 'Southern' replace: Eucalyptus horistes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus horistes subsp. 'Southern' + taxonomic_resolution: species +- find: Eucalyptus horistes subsp. 'horistes' replace: Eucalyptus horistes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus horistes subsp. Southern smooth replace: Eucalyptus horistes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus incrassata (obconic-fruited form) replace: Eucalyptus incrassata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus incrassata (pendulous-fruited form) replace: Eucalyptus incrassata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus incrassata (smooth fruit form) replace: Eucalyptus incrassata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus incrassata (stubby-fruited form) replace: Eucalyptus incrassata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lanepoolei replace: Eucalyptus lane-poolei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eucalyptus mannifera subsp. 'Victorian alps' + replace: Eucalyptus mannifera subsp. Alpine Victoria (Nicolle 2066) + reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth + Wenk, 2022-11-12) + taxonomic_resolution: subspecies - find: Eucalyptus mannifera subsp. Alpine Victoria replace: Eucalyptus mannifera subsp. Alpine Victoria (Nicolle 2066) reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus mannifera subsp. Alpine Victoria (Nicolle 2066) replace: Eucalyptus mannifera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus mannifera subsp. 'Victorian alps' - replace: Eucalyptus mannifera subsp. Alpine Victoria (Nicolle 2066) - reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth - Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: species - find: Eucalyptus microcarpa [Adelaide Variant] replace: Eucalyptus microcarpa 'Adelaide Variant' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus moorei subsp. 'latiuscula' replace: Eucalyptus moorei var. latiuscula reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus oldfieldii subsp. paupera replace: Eucalyptus oldfieldii subsp. paupera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus ovata subsp. grandiflora replace: Eucalyptus ovata var. grandiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus ovata subsp. ovata replace: Eucalyptus ovata var. ovata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus pluricaulis subsp. porphorea replace: Eucalyptus pluricaulis subsp. porphyrea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus portulensis replace: Eucalyptus portuensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus rubida subsp. barbigarorum replace: Eucalyptus rubida subsp. barbigerorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sargentii subsp. onesia replace: Eucalyptus sargentii subsp. onesis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Eucalyptus sp. 'dorsiventralis' + replace: Eucalyptus dorsiventralis MS + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Eucalyptus sp. Adelaide replace: Eucalyptus sp. [Eucalyptus sp. Adelaide; Gallagher_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -253,31 +258,26 @@ taxonomic_updates: replace: Eucalyptus sp. Dartmoor (D.Nicolle & M.French DN 5585) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Eucalyptus sp. 'dorsiventralis' - replace: Eucalyptus dorsiventralis MS - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Dunbar Road replace: Eucalyptus sp. Dunbar Road (D.Nicolle & M.French DN 5466) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Esperance replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Great Victoria Desert replace: Eucalyptus sp. Great Victoria Desert (D.Nicolle & M.French DN 3877) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Haul Road replace: Eucalyptus sp. Cable Haul Road reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) @@ -286,7 +286,7 @@ taxonomic_updates: replace: Eucalyptus sp. Kalbarri (M.I.H.Brooker 7937) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Kitchener replace: Eucalyptus sp. Kitchener (Nicolle 6958 & French 6958) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) @@ -301,7 +301,7 @@ taxonomic_updates: replace: Eucalyptus sp. Lake Magenta (D.Nicolle & M.French DN 5509) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Lort River replace: Eucalyptus sp. [Eucalyptus sp. Lort River; Gallagher_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -316,27 +316,27 @@ taxonomic_updates: replace: Eucalyptus sp. (Mt Garnet D.J.Carr+ 1672B) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mukinbudin replace: Eucalyptus sp. Mukinbudin (D.Nicolle & M.French DN 3486) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mulga Rock replace: Eucalyptus sp. Mulga Rock (K.D.Hill & L.A.S.Johnson KH 2668) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mulga Rock (K.D.Hill & L.A.S.Johnson KH 2668) NSW Herbarium replace: Eucalyptus sp. Mulga Rock (K.D.Hill & L.A.S.Johnson KH 2668) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. North Balladonia replace: Eucalyptus sp. North Balladonia (D.Nicolle & M.French DN 3620) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Port Lincoln replace: Eucalyptus sp. [Eucalyptus sp. Port Lincoln; Gallagher_2015] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -356,35 +356,35 @@ taxonomic_updates: replace: Eucalyptus sp. Southern wheatbelt (D.Nicolle & M.French DN 5507) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Sullivan Soak replace: Eucalyptus sp. Sullivan Soak (D.Nicolle & M.French DN 5503) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Truslove replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus uncinata subsp. 'Esperance Plains' replace: Eucalyptus uncinata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus uncinata subsp. 'Mt Short' replace: Eucalyptus sp. [Eucalyptus uncinata subsp. 'Mt Short'] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus uncinata subsp. 'uncinata' replace: Eucalyptus uncinata var. uncinata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus viminalis subsp. siliciana replace: Eucalyptus viminalis subsp. siliceana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Gallagher_2018/metadata.yml b/data/Gallagher_2018/metadata.yml index 7f2b5e094..7df0dcb2b 100644 --- a/data/Gallagher_2018/metadata.yml +++ b/data/Gallagher_2018/metadata.yml @@ -144,11 +144,11 @@ taxonomic_updates: replace: Banksia spinulosa var. collina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia spinulosa var.spinulosa replace: Banksia spinulosa var. spinulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Gardiner_2019/metadata.yml b/data/Gardiner_2019/metadata.yml index 8d1d19fea..aadd7d7a0 100644 --- a/data/Gardiner_2019/metadata.yml +++ b/data/Gardiner_2019/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(species_name_full = case_when( species_name == "ACLA" ~ "Acronychia laevis", diff --git a/data/Geange_2017/metadata.yml b/data/Geange_2017/metadata.yml index 0bbd342a5..3ad0232ca 100644 --- a/data/Geange_2017/metadata.yml +++ b/data/Geange_2017/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(`LMR`,`ABG_BG`), ~na_if(.x, 0)), diff --git a/data/Geange_2020/metadata.yml b/data/Geange_2020/metadata.yml index 0a3af7484..c8791aada 100644 --- a/data/Geange_2020/metadata.yml +++ b/data/Geange_2020/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( root_mass_fraction = Root_Weight / (ABG_Weight + Root_Weight), diff --git a/data/Ghannoum_2010/metadata.yml b/data/Ghannoum_2010/metadata.yml index 9f77f95eb..f838d0ca5 100644 --- a/data/Ghannoum_2010/metadata.yml +++ b/data/Ghannoum_2010/metadata.yml @@ -34,7 +34,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site = "University of Western Sydney", @@ -322,7 +322,9 @@ traits: value_type: raw basis_of_value: measurement replicates: 1 - methods: Leaf area was determined using a portable leaf area meter (LI-3100A, LI-COR, Lincoln, NE, USA).Harvested samples were oven-dried at 80 deg C for 48 h, then weighed. LMA based on the ratio of leaf mass / leaf area for the entire plant. + methods: Leaf area was determined using a portable leaf area meter (LI-3100A, LI-COR, + Lincoln, NE, USA).Harvested samples were oven-dried at 80 deg C for 48 h, then + weighed. LMA based on the ratio of leaf mass / leaf area for the entire plant. - var_in: leaf_area_ratio unit_in: mm2/mg trait_name: leaf_area_ratio @@ -384,7 +386,9 @@ traits: value_type: raw basis_of_value: measurement replicates: 1 - methods: Leaf area was determined using a portable leaf area meter (LI-3100A, LI-COR, Lincoln, NE, USA).Harvested samples were oven-dried at 80 deg C for 48 h, then weighed. LMA based on the ratio of leaf mass / leaf area of a single leaf. + methods: Leaf area was determined using a portable leaf area meter (LI-3100A, LI-COR, + Lincoln, NE, USA).Harvested samples were oven-dried at 80 deg C for 48 h, then + weighed. LMA based on the ratio of leaf mass / leaf area of a single leaf. - var_in: LSolSugA (g m-2) unit_in: g/m2 trait_name: leaf_soluble_sugars_per_area diff --git a/data/Goble_1981/metadata.yml b/data/Goble_1981/metadata.yml index 29b49170c..a93900fb4 100644 --- a/data/Goble_1981/metadata.yml +++ b/data/Goble_1981/metadata.yml @@ -194,12 +194,12 @@ taxonomic_updates: replace: Banksia menziesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nuytsia floribunda (seedl.) replace: Nuytsia floribunda reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Unknown No. 1 diff --git a/data/Gosper_2004/metadata.yml b/data/Gosper_2004/metadata.yml index 14d6108e4..1253ee624 100644 --- a/data/Gosper_2004/metadata.yml +++ b/data/Gosper_2004/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(fruit_dry_weight = `Mean fruit wet weight (g)`*(1-(`Water + custom_R_code: data %>% mutate(fruit_dry_weight = `Mean fruit wet weight (g)`*(1-(`Water content (%)`/100))) %>% mutate(fruiting_time = paste0(Jan_fruiting,Feb_fruiting,Mar_fruiting,Apr_fruiting,May_fruiting,Jun_fruiting,Jul_fruiting,Aug_fruiting,Sep_fruiting,Oct_fruiting,Nov_fruiting,Dec_fruiting) %>% convert_01_ny) %>% mutate(fruiting_time = ifelse(fruiting_time == "nananananananananananana",NA,fruiting_time)) collection_date: 1995-09/2000-02 taxon_name: Species @@ -274,14 +274,14 @@ substitutions: find: nananananananananananana replace: .na taxonomic_updates: -- find: Cassytha sp. - replace: Cassytha sp. [Gosper_2004] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Aphitonia excelsa replace: Alphitonia excelsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cassytha sp. + replace: Cassytha sp. [Gosper_2004] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: additional_traits: endocarp and pericarp mass, endocarp length, percent glucose, diff --git a/data/Gosper_2012/metadata.yml b/data/Gosper_2012/metadata.yml index 6e4f92fe8..6b023c5c7 100644 --- a/data/Gosper_2012/metadata.yml +++ b/data/Gosper_2012/metadata.yml @@ -43,7 +43,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `Compeditive stratum` = ifelse(GosperJVS2012_PFT == "Ephem","post_fire_ephemeral",`Compeditive stratum`), @@ -238,7 +238,7 @@ taxonomic_updates: replace: Cassytha glabella f. dispar reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Eucalyptus tenera X suggrandis replace: Eucalyptus x [Eucalyptus tenera X suggrandis; Gosper_2012] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -247,40 +247,40 @@ taxonomic_updates: - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wheatbelt (S. Murray 257) replace: Leucopogon sp. Wheatbelt (S.Murray 257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. stellate (A. Strid 21885) replace: Microcorys sp. stellate (A.Strid 21885) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile squamata subsp. northern (J. Monks 40) replace: Petrophile squamata subsp. Northern (J.Monks 40) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus sp. A1 Boorabbin (K.L. Wilson 2581) replace: Schoenus sp. A1 Boorabbin (K.L.Wilson 2581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus subflavus subsp. hispid culms (K.R. Newbey 8278) replace: Schoenus subflavus subsp. hispid culms (K.R.Newbey 8278) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Gosper_2018/metadata.yml b/data/Gosper_2018/metadata.yml index 0a934d98a..74a7d8731 100644 --- a/data/Gosper_2018/metadata.yml +++ b/data/Gosper_2018/metadata.yml @@ -45,7 +45,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( life_history = ifelse(`Growth form` == "Annual", "annual", "perennial"), @@ -287,7 +287,7 @@ taxonomic_updates: replace: Ptilotus spathulatus f. spathulatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma exclude_observations: .na questions: contributor: Is it correct that you only have time until first fruiting for just diff --git a/data/Gosper_2022/metadata.yml b/data/Gosper_2022/metadata.yml index 34aa42ef7..2bec214b9 100644 --- a/data/Gosper_2022/metadata.yml +++ b/data/Gosper_2022/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Time_from_fire_to_fruit = ifelse(`Species Name` == "Eucalyptus salubris", NA, Time_from_fire_to_fruit), @@ -32,17 +32,29 @@ dataset: collection_date: 2012-09/2012-11 taxon_name: Species Name location_name: Location - description: Quantifying the period of time after fire for obligate-seeding species to become reproductively mature (the juvenile period) to understand when the interval between two fires is too short to allow a plant population to develop the capacity to persist through the second fire. + description: Quantifying the period of time after fire for obligate-seeding species + to become reproductively mature (the juvenile period) to understand when the interval + between two fires is too short to allow a plant population to develop the capacity + to persist through the second fire. basis_of_record: field life_stage: adult - sampling_strategy: Two locations were sampled in the Parker Range area, Western Australia, a `Eucalypt woodland` and `Low closed forests and tall closed shrubland`. At the Eucalypt woodland, 16-24 sites were sampled per species, with 20 individuals censused at each site. At the `low closed forest` 9-11 sites were sampled per species, with 20 individuals censused at each site. The time since the last fire at this locaiton spanned 10-~260 years. The Eucalpyt woodland site was sampled 5x post-fire and the low closed forest site was sampled 6x post-fire to determine when the first individual and 50% of the individuals at a site were fruiting. The time since the last fire at this locaiton spanned 9-47 years, plus an additional 'long unburnt site'. + sampling_strategy: Two locations were sampled in the Parker Range area, Western + Australia, a `Eucalypt woodland` and `Low closed forests and tall closed shrubland`. + At the Eucalypt woodland, 16-24 sites were sampled per species, with 20 individuals + censused at each site. At the `low closed forest` 9-11 sites were sampled per + species, with 20 individuals censused at each site. The time since the last fire + at this locaiton spanned 10-~260 years. The Eucalpyt woodland site was sampled + 5x post-fire and the low closed forest site was sampled 6x post-fire to determine + when the first individual and 50% of the individuals at a site were fruiting. + The time since the last fire at this locaiton spanned 9-47 years, plus an additional + 'long unburnt site'. original_file: in raw data folder notes: none -locations: +locations: Parker Range area, Western Australia, Eucalypt woodlands: latitude (deg): -31.6697 longitude (deg): 119.4827 - description: Eucalypt woodlands + description: Eucalypt woodlands fire history (years since fire): 10-~260 Parker Range area, Western Australia, low closed forest: latitude (deg): -31.6697 @@ -58,7 +70,7 @@ traits: value_type: mean basis_of_value: measurement replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: Time_from_fire_to_50%fruit unit_in: mo trait_name: fire_time_from_fire_to_50_percent_fruiting @@ -66,7 +78,7 @@ traits: value_type: mean basis_of_value: measurement replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: Fire_response unit_in: .na trait_name: resprouting_capacity @@ -74,7 +86,7 @@ traits: value_type: mode basis_of_value: expert_score replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: serotiny unit_in: .na trait_name: serotiny @@ -82,7 +94,7 @@ traits: value_type: mode basis_of_value: expert_score replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: seed_storage_location unit_in: .na trait_name: seedbank_location @@ -90,7 +102,7 @@ traits: value_type: mode basis_of_value: expert_score replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: Compeditive_stratum unit_in: .na trait_name: competitive_stratum @@ -98,7 +110,7 @@ traits: value_type: mode basis_of_value: expert_score replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. - var_in: Lifespan unit_in: a trait_name: lifespan @@ -106,7 +118,7 @@ traits: value_type: minimum basis_of_value: expert_score replicates: replicates - methods: Repeat field observations post-fire. + methods: Repeat field observations post-fire. substitutions: - trait_name: lifespan find: Long diff --git a/data/GrassBase_2014/metadata.yml b/data/GrassBase_2014/metadata.yml index cf96fcb01..4a0c176a8 100644 --- a/data/GrassBase_2014/metadata.yml +++ b/data/GrassBase_2014/metadata.yml @@ -104,27 +104,27 @@ taxonomic_updates: - find: Arthraxon castratu replace: Arthraxon castratus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa juncifolia subsp. Southern replace: Austrostipa juncifolia subsp. Southern River (B.J.Keighery 2160) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calyptochloa cylindropserma replace: Calyptochloa cylindrosperma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris macivorii replace: x Cynochloris macivorii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma popinensis replace: Rytidosperma popinense reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Gray_2019/metadata.yml b/data/Gray_2019/metadata.yml index c4d4714a1..eabd13e10 100644 --- a/data/Gray_2019/metadata.yml +++ b/data/Gray_2019/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(`Nmass (%)`,`Narea (g/m2)`,`Pmass (%)`,`LeafP_mass`,`Parea (g/m2)`), diff --git a/data/Grigg_2008/metadata.yml b/data/Grigg_2008/metadata.yml index dd62d8bfc..9fd4cf1a5 100644 --- a/data/Grigg_2008/metadata.yml +++ b/data/Grigg_2008/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Gillian Kowalick dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(root_structure, plant_growth_form, nitrogen_fixing), replace_duplicates_with_NA)) %>% @@ -421,7 +421,8 @@ traits: A subsample of leaf material was digested with a mixture of nitric and perchloric acids (McQuaker et al. 1979), and then analysed by ICP-AES (Varian Vista axial spectrometer, Palo Alto, CA, USA) to determine concentrations of P, K, Ca, Mg, - S, B, Cu, Fe, Mn and Zn. (Units in figure are ug/g, but the values are far too low for these units, and the data are mapped in as mg/g in AusTraits) + S, B, Cu, Fe, Mn and Zn. (Units in figure are ug/g, but the values are far too + low for these units, and the data are mapped in as mg/g in AusTraits) - var_in: B_concentration unit_in: ug/g trait_name: leaf_B_per_dry_mass diff --git a/data/Groom_1997/metadata.yml b/data/Groom_1997/metadata.yml index 88fe66a41..c262f5515 100644 --- a/data/Groom_1997/metadata.yml +++ b/data/Groom_1997/metadata.yml @@ -35,7 +35,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(everything(), ~as.character(.x)), @@ -230,68 +230,68 @@ taxonomic_updates: - find: Hakea cygna cygna replace: Hakea cygna subsp. cygna reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea cygna needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea fran coriacea replace: Hakea coriacea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea francisiana fran replace: Hakea francisiana reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea obliqua obliqua replace: Hakea obliqua subsp. obliqua reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea obliqua parviflora replace: Hakea obliqua subsp. parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea orth fil replace: Hakea orthorrhyncha var. filiformis reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hakea orth orth replace: Hakea orthorrhyncha var. orthorrhyncha reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hakea pand crass replace: Hakea pandanicarpa subsp. crassifolia reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea psilorryncha replace: Hakea psilorrhyncha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea recurva arida replace: Hakea recurva subsp. arida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea recurva recurva replace: Hakea recurva subsp. recurva reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea scoparia scoparia replace: Hakea scoparia subsp. scoparia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: seed wall thickness (all dimensions), fruit density, seed wing diff --git a/data/Groom_2010/metadata.yml b/data/Groom_2010/metadata.yml index ddc034e67..4702d3933 100644 --- a/data/Groom_2010/metadata.yml +++ b/data/Groom_2010/metadata.yml @@ -48,7 +48,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( seed_dry_mass_mg = if_else(source %in% c("Kuo_1982","Denton_2007","Milberg_1998", diff --git a/data/Grootemaat_2015/metadata.yml b/data/Grootemaat_2015/metadata.yml index a637609c2..66648e483 100644 --- a/data/Grootemaat_2015/metadata.yml +++ b/data/Grootemaat_2015/metadata.yml @@ -42,7 +42,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(taxon != "NA NA") %>% group_by(taxon) %>% @@ -498,11 +498,11 @@ taxonomic_updates: - find: Allocasuarina sp replace: Allocasuarina sp. [Grootemaat_2015] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Dodonaea viscosa subsp. spathulata replace: Dodonaea viscosa var. spathulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Grootemaat_2017_1/metadata.yml b/data/Grootemaat_2017_1/metadata.yml index 48bc41fb0..ac83e0f85 100644 --- a/data/Grootemaat_2017_1/metadata.yml +++ b/data/Grootemaat_2017_1/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( specific_leaf_area = `Leaf area (cm2)`/`Leaf dry mass (g)`, @@ -1129,7 +1129,7 @@ taxonomic_updates: - find: Anophora hispida replace: Angophora hispida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: Note to AusTraits data processors, this study includes many additional diff --git a/data/Grootemaat_2017_2/metadata.yml b/data/Grootemaat_2017_2/metadata.yml index 81c6674e6..8b9c590dc 100644 --- a/data/Grootemaat_2017_2/metadata.yml +++ b/data/Grootemaat_2017_2/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( measurement_remarks = ifelse(material == "dried","air-dried live leaves", @@ -466,12 +466,12 @@ taxonomic_updates: - find: Allocasuarina sp replace: Allocasuarina sp. [Grootemaat_2017_2] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Dodonaea viscosa subsp. spathulata replace: Dodonaea viscosa var. spathulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: additional_traits: This study also contains data on four traits related to fuel diff --git a/data/Gross_2005/metadata.yml b/data/Gross_2005/metadata.yml index c36103f0c..8d23ed7d9 100644 --- a/data/Gross_2005/metadata.yml +++ b/data/Gross_2005/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Australian tropics north of -19 deg + custom_R_code: data %>% mutate(site_name = "Australian tropics north of -19 deg S") %>% mutate(fruit_fleshiness = `Fruit type`, fruit_dehiscence = `Fruit type`) collection_date: unknown/2004 taxon_name: Species @@ -366,510 +366,510 @@ taxonomic_updates: - find: Acmena ssp. (Cooper Creek GS 1419) replace: Acmena sp. (Cooper Creek GS 1419) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia ssp. (Batavia Downs JRC 8511) replace: Acronychia sp. (Batavia Downs JRC 8511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia ssp. (Gap Creek LWJ 651) replace: Aidia sp. (Gap Creek L.W.Jessup 651) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium ssp. (Claudie Riv. BH2682RFK) replace: Alangium sp. (Claudie River BH 2682RFK) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia ssp. (Sir Charles Hardy Is BH 25849RFK) replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia ssp. (Windsor Tableland BG 2181) replace: Albizia sp. (Windsor Tableland BG 2181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon coriaceous replace: Alectryon coriaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia ssp. (Forty Mile Scrub BH 25763RFK) replace: Alphitonia sp. (Forty Mile Scrub BH 25763RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia ssp. (Kimberley BH 25117RFK) replace: Alphitonia sp. (Kimberley BH 25117RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea ssp. (Mt Lewis BG 5733) replace: Antirhea sp. Mt Misery (L.W.Jessup+ GJD3136) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Mt Haig ( L.S.Smith+ 14307) replace: Argyrodendron sp. Mt Haig (L.S.Smith+ 14307) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK 1106) replace: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK1106) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron ssp. (Boonjee BH 2139RFK) replace: Argyrodendron sp. (Boonjee BH 2139RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron ssp. (Mt Haig LSS 14307) replace: Argyrodendron sp. (Mt Haig LSS 14307) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron ssp. (Penta Tulip Oak BH 2565RFK) replace: Argyrodendron sp. (Penta Tulip Oak BH 2565RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron ssp. (Whyanbeel BH 1106RFK) replace: Argyrodendron sp. (Whyanbeel BH 1106RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Annan River BH 25539RFK) replace: Austromyrtus sp. (Annan River BH 25539RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Bamaga BH 10235) replace: Austromyrtus sp. (Bamaga BH 10235) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Byerstown Range GPG 2037) replace: Austromyrtus sp. (Byerstown Range GPG 2037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Cape Flattery LJW 13537) replace: Austromyrtus sp. (Cape Flattery LJW 13537) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Danbulla LSS 10123) replace: Austromyrtus sp. (Danbulla LSS 10123) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Forty Mile Scrub GCS 1785) replace: Austromyrtus sp. (Forty Mile Scrub GCS 1785) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Gillies BG 1484) replace: Austromyrtus sp. (Gillies BG 1484) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Leo Creek BG 5244) replace: Austromyrtus sp. (Leo Creek BG 5244) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (McIlwraith Range BH 11148) replace: Austromyrtus sp. (McIlwraith Range BH 11148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Mt Lewis BG 831) replace: Austromyrtus sp. (Mt Lewis BG 831) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus ssp. (Windsor Tableland BG 412) replace: Austromyrtus sp. (Windsor Tableland BG 412) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Breynia ssp. (Black Mountain BH 25658RFK) replace: Breynia sp. (Black Mountain BH 25658RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Briedelia insulana var. insulana replace: Bridelia insulana var. insulana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Briedelia leichhardtii replace: Bridelia leichhardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium ssp. (Friday Island LJB 18158) replace: Canthium sp. (Friday Island LJB 18158) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium ssp. (Herberton Range SFK 1377) replace: Canthium sp. (Herberton Range SFK 1377) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium ssp. (Kimberley BH 25133RFK) replace: Canthium sp. (Kimberley BH 25133RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium ssp. (Whitfield Range BH 1020RFK) replace: Canthium sp. (Whitfield Range) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casearia ssp. (Mission Beach BH 773RFK) replace: Casearia sp. (Mission Beach B.P.Hyland 773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratopetalum ssp. (Mt Hemmant BH 3338RFK) replace: Ceratopetalum sp. (Mt Hemmant BH 3338RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratopetalum ssp. (Mt Spurgeon BH 1501RFK) replace: Ceratopetalum sp. Mt Spurgeon (B.Hyland RFK1501) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionanthus sp. [Linociera sp. (Little Pine LA BH 2520RFK)] replace: Linociera sp. (Little Pine LA BH 2520RFK) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysophyllum ssp. (Mt Lewis AKI 1402) replace: Chrysophyllum sp. (Mt Lewis AKI 1402) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codiaeum variagatum replace: Codiaeum variegatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia ssp. (Klondike BH 25863RFK) replace: Commersonia sp. (Klondike BH 25863RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton densivetitus replace: Croton densivestitus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton phebaliodes replace: Croton phebalioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton ssp. (Possum scrub, PIF14376) replace: Croton sp. (Possum Scrub P.I.Forster PIF14376) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crudia ssp. (Archer River BH 3078RFK) replace: Crudia sp. (Archer River BH 3078RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya endiaridrifolia replace: Cryptocarya endiandrifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya hypospadia replace: Cryptocarya hypospodia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya ssp. (Boonjee BH 25794RFK) replace: Cryptocarya sp. (Boonjee BH 25794RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya ssp. (Gadgarra BH 25231RFK) replace: Cryptocarya sp. (Gadgarra BH 25231RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros ssp. (Baird LA BH 9374) replace: Diospyros sp. (Baird LA BH 9374) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros ssp. (Mt Lewis LSS 10107) replace: Diospyros sp. (Mt Lewis L.S.Smith 10107) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros ssp. (Mt Spurgeon CTW 10677) replace: Diospyros sp. (Mt Spurgeon CTW 10677) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros ssp. (Mt White PIF 14415) replace: Diospyros sp. (Mt White P.I.Forster PIF14415) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros ssp. (Swipers LA BH 1984RFK) replace: Diospyros sp. (Swipers LA B.Hyland 1984RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryadodaphne ssp. (Mt Lewis BH 1496RFK) replace: Dryadodaphne sp. 'Mt Lewis' (B.P.Hyland+ RFK1496) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysoxylum ssp. (Gosschalk LA BG 786) replace: Dysoxylum sp. (Gosschalk LA BG 786) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus ssp. (Mossman Bluff DF 1666) replace: Elaeocarpus sp. (Mossman Bluff D.G.Fell DF1666) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus ssp. (Mt Bellenden Ker LJB 18336) replace: Elaeocarpus sp. (Mt Bellenden Ker LJB 18336) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus ssp. (Mt Spurgeon BH 2907RFK) replace: Elaeocarpus sp. (Mt Spurgeon BH 2907RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus ssp. (Windsor Tableland BH 5541) replace: Elaeocarpus sp. (Windsor Tableland L.W.Jessup+ GJM1378) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum ssp. (Cape York EC 20162) replace: Erythroxylum sp. (Cape York EC 20162) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus opposita var. micrantha replace: Ficus opposita var. micracantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Flacourtia ssp. ~Shiptons Flat LWJ + GJD 3200) replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia ssp. (Claudie River LJB 19658) replace: Garcinia sp. Claudie River (L.J.Brass 19658) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia ssp. (Davies Creek JGT 14745) replace: Garcinia sp. (Davies Creek JGT 14745) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedraianthera ssp. (Mossman VKM 2557) replace: Hedraianthera sp. (Mossman V.K.Moriarty 2557) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea ssp. (Pinnacle Rock Track PIF 10714) replace: Hollandaea sp. (Pinnacle Rock Track PIF 10714) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilex sp. Gadgarra (B.P.Hyland RFK 2011) Qld Herbarium replace: Ilex sp. 'Gadgarra' (B.P.Hyland RFK 2011) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilex ssp. (Gadgarra BH 2011RFK) replace: Ilex sp. (Gadgarra BH 2011RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixora ssp. (North Mary LA BH 8618) replace: Ixora sp. (North Mary LA B.H. 8618) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jagera pseudorhus var. pseudorhus forma pilosiuscula replace: Jagera pseudorhus f. pilosiuscula reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Medicosma ssp. (Pieter Botte BH 3503RFK) replace: Medicosma sp. (Pieter Botte BH 3503RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua lamachiana replace: Mesua larnachiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua sp. Boonjee (A.K. Irvine 1218) replace: Mesua sp. Boonjie (A.K.Irvine 1218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua ssp. (Boonjee AKI 1218) replace: Mesua sp. (Boonjee AKI 1218) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Millettia sp. [Pongamia glabra var. minor] replace: Millettia pinnata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrephora zippelliana replace: Mitrephora zippeliana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monimiaceae Gen. Nov. ssp. (Davies Creek LJW 6430) replace: Gen. (AQ63687) sp. (Davies Creek L.J.Webb+ 6430) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrtaceae Gen. Nov. ssp. (Boonjee BH 6589) replace: Myrtaceae Gen. Nov. sp. (Boonjee BH 6589) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orites ssp. (Pinnacle Rock Track WWC 867) replace: Orites sp. (Pinnacle Rock Track WWC 867) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyalthia ssp. (Wyvuri BH 2632RFK) replace: Polyalthia sp. (Wyvuri BH 2632RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyaulax ssp. (Tingle Scrub DGF 2676) replace: Polyaulax sp. (Tingle Scrub DGF 2676) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma reducta vel aft. replace: Polyosma reducta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Lewis BH 25241RFK) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. Mt Lewis (B.Hyland RFK25241) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma ssp. (Mt Bellenden Ker BH 2524RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma ssp. (Mt Lewis BH 25241RFK) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pongamia ssp. (McIlwraith BH 3295RFK) replace: Pongamia sp. (McIlwraith BH 3295RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species -- find: pouteria pohlmaniana var. pohlmaniana - replace: Pouteria pohlmaniana - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria ssp. (Barong MT 22) replace: Pouteria sp. (Barong M.Tucker 22) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria ssp. (Mt Lewis BH 2475RFK) replace: Pouteria sp. (Mt Lewis B.P.Hyland 579) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia ssp. (Barong BG 742) replace: Quassia sp. (Barong BG 742) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia ssp. (Cape York LSS 12538) replace: Rhodamnia sp. (Cape York LSS 12538) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia ssp. (McIlwraith Range LJW 9527) replace: Rhodamnia sp. (McIlwraith Range LJW 9527) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia ssp. (Silver Plains BH 2866RFK) replace: Rhodamnia sp. (Silver Plains BH 2866RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sapindaceae ssp. (Noah Creek BG 6026) replace: Sapindaceae sp. (Noah Creek BG 6026) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcopteryx ssp. (McIlwraith Range BH 3261RFK) replace: Sarcopteryx sp. (McIlwraith Range BH 3261RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcotoechia ssp. (Mountain Sarcotoechia WWC 100) replace: Sarcotoechia sp. (Mountain Sarcotoechia WWC100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus sp. Hinchinbrook Is. (F.D.Hocking AQ229860) replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus ssp. (Hinchinbrook Is. FDH AQ229860) replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos cochinchinensis ssp. thwaitesii var. gittonsii replace: Symplocos cochinchinensis var. gittonsii reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos cochinchinensis ssp. thwaitesii var. glaberrim replace: Symplocos cochinchinensis var. glaberrima reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos cochinchinensis ssp. thwaitesii var. pilosiusc replace: Symplocos cochinchinensis var. pilosiuscula reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos ssp. (Mt Finnigan LJB 21029) replace: Symplocos sp. (Mt Finnigan LJB 20129) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos ssp. (North Mary BG 2543) replace: Symplocos sp. (North Mary B.Gray 2543) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium ssp. (Bartle Frere BH 12923) replace: Syzygium sp. (Bartle Frere BH 12923) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium ssp. (Mt Misery GS 1131) replace: Syzygium sp. (Mt Misery GS 1131) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tabemaemontana pubescens replace: Tabernaemontana pubescens reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia ssp. (Mt Bellenden Ker JRC 6571) replace: Tasmannia sp. (Mt Bellenden Ker J.R.Clarkson 6571) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetrasynandra ssp. (Mt Lewis BH 1053RFK) replace: Tetrasynandra sp. 'Mt Lewis' (B.P.Hyland 7907) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uromyrtus sp. Tinaroo Range (G.P.Guymer 2034) replace: Uromyrtus sp. (Tinaroo Range G.P.Guymer 2034) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uromyrtus ssp. (Tinaroo Range GPG 2034) replace: Uromyrtus sp. (Tinaroo Range G.P.Guymer 2034) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wendlandia cannata replace: Wendlandia connata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea ssp. (Mt Molloy LSS 3955) replace: Wilkiea sp. (Mt. Molloy LSS 3955) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea ssp. (palmerston BH 80RFK) replace: Wilkiea sp. (Palmerston BH 80RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylopia ssp. (B. Homestead CD CC173) replace: Xylopia sp. (Bertiehaugh Homestead C.Dalliston CC173) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp. Mt Lewis (G.Sankowsky 1108) replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma ssp. (Mt Lewis GS 1108) replace: Xylosma sp. (Mt Lewis GS 1108) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: pouteria pohlmaniana var. pohlmaniana + replace: Pouteria pohlmaniana + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Groves_1986/metadata.yml b/data/Groves_1986/metadata.yml index 13996f0a9..24b696b7b 100644 --- a/data/Groves_1986/metadata.yml +++ b/data/Groves_1986/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Gillian Kowalick dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( plant_age_yrs = as.character(plant_age_yrs) @@ -2903,4 +2903,5 @@ substitutions: .na taxonomic_updates: .na exclude_observations: .na questions: - additional_traits: Additional flower and seed nutrient traits that could be mapped in. + additional_traits: Additional flower and seed nutrient traits that could be mapped + in. diff --git a/data/Grubb_1996/metadata.yml b/data/Grubb_1996/metadata.yml index 6bb8d5acc..679b1720e 100644 --- a/data/Grubb_1996/metadata.yml +++ b/data/Grubb_1996/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "northeastern Queensland", @@ -170,35 +170,35 @@ taxonomic_updates: - find: Athertonia diversidolia replace: Athertonia diversifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia bartamia replace: Commersonia bartramia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus detruens replace: Ficus destruens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus nov. RFK (Proteaceae) replace: Proteaceae sp. (RFK 3505) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma rhytidiphloia replace: Polyosma rhytiphloia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Semecarpus australiense replace: Semecarpus australiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium dansei replace: Syzygium dansiei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium guastavioides replace: Syzygium gustavioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: shade tolerance. diff --git a/data/Grubb_2008/metadata.yml b/data/Grubb_2008/metadata.yml index 1259b61cb..c5da78797 100644 --- a/data/Grubb_2008/metadata.yml +++ b/data/Grubb_2008/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: data %>% mutate(across(c("SLA (cm2/g)"), ~na_if(.x, 0))) + custom_R_code: data %>% mutate(across(c("SLA (cm2/g)"), ~na_if(.x, 0))) collection_date: 2002/2002 taxon_name: species location_name: site @@ -97,34 +97,34 @@ taxonomic_updates: replace: Apodytes brachystylis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya oblata_ replace: Cryptocarya oblata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crytocarya mackinnoniana replace: Cryptocarya mackinnoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Omalanthus novogunieensis replace: Omalanthus novo-guineensis reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptychanthus racemiger replace: Psychanthus racemiger reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus macropus replace: Sauropus macranthus reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium wilsonii_ssp_cryptophlebium replace: Syzygium wilsonii subsp. cryptophlebium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: - variable: taxon_name find: Ptychanthus racemiger diff --git a/data/Guilherme_Pereira_2019/metadata.yml b/data/Guilherme_Pereira_2019/metadata.yml index 9d847a3a8..31fc1380a 100644 --- a/data/Guilherme_Pereira_2019/metadata.yml +++ b/data/Guilherme_Pereira_2019/metadata.yml @@ -44,7 +44,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(across(c("N (mature) (mg/g)"), ~na_if(.x, 0)), site_name = ifelse(Stage == "Stage_1", "Quindalup Young", Stage), diff --git a/data/Hall_1981/metadata.yml b/data/Hall_1981/metadata.yml index a34bf5cf0..34eeff860 100644 --- a/data/Hall_1981/metadata.yml +++ b/data/Hall_1981/metadata.yml @@ -161,10 +161,10 @@ taxonomic_updates: - find: Oryza australis replace: Oryza australiensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium intergrifolium replace: Teucrium integrifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Harrison_2009/metadata.yml b/data/Harrison_2009/metadata.yml index 7d63c00b1..e24718761 100644 --- a/data/Harrison_2009/metadata.yml +++ b/data/Harrison_2009/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( context_name = if_else(is.na(`age`), "no_context", @@ -416,15 +416,15 @@ taxonomic_updates: - find: Acacia bekleri replace: Acacia beckleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum shulzenii replace: Lasiopetalum schulzenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia magnifolia replace: Rulingia magniflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: fraction of leaf N in Rubisco diff --git a/data/Harvey_2017/metadata.yml b/data/Harvey_2017/metadata.yml index c7b2247d5..8e992730d 100644 --- a/data/Harvey_2017/metadata.yml +++ b/data/Harvey_2017/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Comeditive_stratum = ifelse(PFT_Gosper2012 == "Ephem","post_fire_ephemeral",Comeditive_stratum), diff --git a/data/Hassiotou_2009/metadata.yml b/data/Hassiotou_2009/metadata.yml index a4cb8eecb..a8e78b65c 100644 --- a/data/Hassiotou_2009/metadata.yml +++ b/data/Hassiotou_2009/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site_name = "Perth") ' diff --git a/data/Hayes_2014/metadata.yml b/data/Hayes_2014/metadata.yml index ad2369b57..ee0c79bc7 100644 --- a/data/Hayes_2014/metadata.yml +++ b/data/Hayes_2014/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( nitrogen_fixing = str_detect(specific.uptake.strategy, "/n fixing", negate = FALSE), diff --git a/data/Hayes_2018/metadata.yml b/data/Hayes_2018/metadata.yml index 61231520f..8a2bea678 100644 --- a/data/Hayes_2018/metadata.yml +++ b/data/Hayes_2018/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(individual_id = paste(species, `biological.rep`, sep = "_")) ' diff --git a/data/He_2011/metadata.yml b/data/He_2011/metadata.yml index ed98d5666..19c2f958a 100644 --- a/data/He_2011/metadata.yml +++ b/data/He_2011/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(storage_organ = ifelse(str_detect(bud_bank_location, "lignotuber"), "lignotuber", NA)) ' diff --git a/data/Henery_2001/metadata.yml b/data/Henery_2001/metadata.yml index 4b3624312..3bb5065de 100644 --- a/data/Henery_2001/metadata.yml +++ b/data/Henery_2001/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Kuringgai_NP") + custom_R_code: data %>% mutate(site_name = "Kuringgai_NP") collection_date: 1998/1998 taxon_name: name_original location_name: site_name @@ -114,22 +114,22 @@ taxonomic_updates: - find: Acacia suavolens replace: Acacia suaveolens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hovea linearifolia replace: Hakea linearifolia reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia pinnifolia replace: Persoonia pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllotta phyllicoides replace: Phyllota phylicoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea eilliptica replace: Pultenaea elliptica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Huang_2015/metadata.yml b/data/Huang_2015/metadata.yml index 477ccc1ef..df8a49167 100644 --- a/data/Huang_2015/metadata.yml +++ b/data/Huang_2015/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(Potnum = ifelse(is.na(Potnum),paste("temp", row_number(), sep = "_"),Potnum)) %>% filter(Potnum != 68) diff --git a/data/Hughes_1992/metadata.yml b/data/Hughes_1992/metadata.yml index a9c3f60ae..7d1244080 100644 --- a/data/Hughes_1992/metadata.yml +++ b/data/Hughes_1992/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `flowering duration` = convert_month_range_vec_to_binary(`flowering duration`), @@ -203,151 +203,151 @@ substitutions: find: exo-zoochory replace: epizoochory taxonomic_updates: -- find: Wahlenbergia sp - replace: Wahlenbergia sp. [Hughes_1992] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Ampera xiphoclada replace: Amperea xiphoclada reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea ramossissima replace: Baeckea ramosissima reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia brevifolia replace: Baeckea brevifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia densifolia replace: Baeckea densifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia diosmifolia replace: Baeckea diosmifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia imbricata replace: Baeckea imbricata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckia linifolia replace: Baeckea linifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia asplenifolia replace: Banksia aspleniifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytix tetragona replace: Calytrix tetragona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpobrotus glaucesens replace: Carpobrotus glaucescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicanthium sericeum replace: Dichanthium sericeum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sericea ssp B replace: Dillwynia sericea subsp. B reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Doryanthes exelsa replace: Doryanthes excelsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus botyroides replace: Eucalyptus botryoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus micrantha replace: Gonocarpus micranthus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus krausii replace: Juncus kraussii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma longitudinal replace: Lepidosperma longitudinale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma viscidium replace: Lepidosperma viscidum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum polygalifoli replace: Leptospermum polygalifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum rotundifoliu replace: Leptospermum rotundifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oplismenus imbecillus replace: Oplismenus imbecillis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Patersonia sericea var replace: Patersonia sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea latifolia hirsuta replace: Pimelea latifolia subsp. hirsuta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pratia pendunculata replace: Pratia pedunculata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pratia purpurescens replace: Pratia purpurascens reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuderantheum variabile replace: Pseuderanthemum variabile reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ranunculus plebius replace: Ranunculus plebeius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapana variabilis replace: Rapanea variabilis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia rubescens (tri) replace: Rhodamnia rubescens reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio lautus ssp dissec replace: Senecio lautus subsp. dissectifolius reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sueda australis replace: Suaeda australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Wahlenbergia sp + replace: Wahlenbergia sp. [Hughes_1992] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ziera laevigata replace: Zieria laevigata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziera pilosa replace: Zieria pilosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziera smithii replace: Zieria smithii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Hughes_2005/metadata.yml b/data/Hughes_2005/metadata.yml index ff550506d..1ef4541ba 100644 --- a/data/Hughes_2005/metadata.yml +++ b/data/Hughes_2005/metadata.yml @@ -539,20 +539,20 @@ taxonomic_updates: - find: Neolitsia dealbata replace: Neolitsea dealbata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea rosmarinofolia replace: Pultenaea rosmarinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea variablis replace: Rapanea variabilis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var 3lft replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: additional vessel, lumen traits diff --git a/data/Hyland_2003/metadata.yml b/data/Hyland_2003/metadata.yml index 39b249273..899b39601 100644 --- a/data/Hyland_2003/metadata.yml +++ b/data/Hyland_2003/metadata.yml @@ -117,11 +117,11 @@ taxonomic_updates: replace: Derris sp. (Daintree D.E.Boyland+ 469) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum dallachi replace: Jasminum dallachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: lots of additional traits in book; a book AusTraits should more diff --git a/data/Ilic_2000/metadata.yml b/data/Ilic_2000/metadata.yml index 2b47a4266..a3877f8f3 100644 --- a/data/Ilic_2000/metadata.yml +++ b/data/Ilic_2000/metadata.yml @@ -58,7 +58,7 @@ taxonomic_updates: replace: Ageratina sp. [Crofton sp.; Ilic_2000] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Croton indet replace: Croton sp. [Croton indet; Ilic_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -83,16 +83,16 @@ taxonomic_updates: replace: Eucalyptus kirtoniana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus nowraensis replace: Eucalyptus x nowraensis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetragona replace: Eucalyptus pleurocarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eugenia indet replace: Eugenia sp. [Eugenia indet; Ilic_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -101,7 +101,7 @@ taxonomic_updates: - find: Garcinia hunsteinii replace: Garcinia sp. aff. G. hunsteinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia indet replace: Garcinia sp. [Garcinia indet; Ilic_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -110,7 +110,7 @@ taxonomic_updates: - find: Gmelina leichardtii replace: Gmelina leichhardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jagera indet replace: Jagera sp. [Jagera indet; Ilic_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -150,11 +150,11 @@ taxonomic_updates: replace: Syzygium sp. [Syzygium indet; Ilic_2000] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Zygogynum whiteana replace: Bubbia whiteana reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Pouteria macrocarpa diff --git a/data/Islam_1999_1/metadata.yml b/data/Islam_1999_1/metadata.yml index d7191c999..e651a2ddd 100644 --- a/data/Islam_1999_1/metadata.yml +++ b/data/Islam_1999_1/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( sample_date = sample_date %>% ym() %>% format.Date("%Y-%m") %>% sort(), @@ -218,15 +218,15 @@ taxonomic_updates: - find: Dysphania radulans replace: Dactyloctenium radulans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus aerovides replace: Ptilotus aervoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sasola kali replace: Kali sp. [Sasola kali; Islam_1999_1] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Islam_1999_2/metadata.yml b/data/Islam_1999_2/metadata.yml index 772b25d20..280be1b17 100644 --- a/data/Islam_1999_2/metadata.yml +++ b/data/Islam_1999_2/metadata.yml @@ -173,19 +173,19 @@ taxonomic_updates: - find: Abutilon octocarpum replace: Abutilon otocarpum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cullen cinerum replace: Cullen cinereum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema membranaceu replace: Iseilema membranaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalidium clementi replace: Paspalidium clementii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: non-structural carbohydrates, dry matter digestibility diff --git a/data/Jagdish_2020/metadata.yml b/data/Jagdish_2020/metadata.yml index b1ef5285a..bf9eaed05 100644 --- a/data/Jagdish_2020/metadata.yml +++ b/data/Jagdish_2020/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(`Seed mass (g)`),replace_duplicates_with_NA)) %>% @@ -391,67 +391,67 @@ taxonomic_updates: - find: Acaena Species A replace: Acaena sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia petrei replace: Alphitonia petriei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus hypoglauca.B replace: Cissus hypoglauca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus hypoglauca.D replace: Cissus hypoglauca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus hypoglauca.M replace: Cissus hypoglauca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coronidium scorpiodes replace: Coronidium scorpioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ebbaneoensis subsp. Ebbanoensis replace: Eucalyptus ebbanoensis subsp. ebbanoensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea dactyloides.RC replace: Hakea dactyloides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum polygafolium replace: Leptospermum polygalifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucochrysum albicans subsp. alpina replace: Leucochrysum albicans subsp. alpinum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Linospadix monostachya.B replace: Linospadix monostachyos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Linospadix monostachya.D replace: Linospadix monostachyos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia M. sp. Mt Norman replace: Muehlenbeckia sp. Mt Norman (J.T.Hunter 3847) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio pinnatifolius subsp. alpinus replace: Senecio pinnatifolius var. alpinus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Syzygium oleosum.B replace: Syzygium oleosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium oleosum.Q replace: Syzygium oleosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Jin_2019/metadata.yml b/data/Jin_2019/metadata.yml index 1b88ba602..edc31b849 100644 --- a/data/Jin_2019/metadata.yml +++ b/data/Jin_2019/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data_max_height <- data %>% summarise(max_height = max(as.numeric(`Height (m)`))); diff --git a/data/Jordan_2001/metadata.yml b/data/Jordan_2001/metadata.yml index 619818698..bb7d00374 100644 --- a/data/Jordan_2001/metadata.yml +++ b/data/Jordan_2001/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( woodiness = `habit (s=woody, p=perennial herb, a=annual herb)`, @@ -230,350 +230,350 @@ taxonomic_updates: - find: Acaena agniplia replace: Acaena agnipila reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acion monocephalus replace: Acion monocephalum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis aff_australiensis replace: Agrostis sp. [Agrostis aff_australiensis; Jordan_2001] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Agrostis aff_hyemalis replace: Agrostis sp. aff. hiemalis reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis aff_parviflora replace: Agrostis sp. [Agrostis aff_parviflora; Jordan_2001] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Agrostis aff_scabra replace: Agrostis aff. scabra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amphibolus antarctica replace: Amphibolis antarctica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anenome crassifolia replace: Anemone crassifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anodopetalum biglandusosum replace: Anodopetalum biglandulosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argentipallium spiceri replace: Argentipallium x spiceri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Balaskion australe replace: Baloskion australe reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Balaskion tetraphyllus replace: Baloskion tetraphyllum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ballantina antipoda replace: Ballantinia antipoda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia anemifolia replace: Boronia anemonifolia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome tadgelii replace: Brachyscome tadgellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calorophus erostis replace: Calorophus erostris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex aff.diandra replace: Carex aff. diandra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex aff_cirrhosa replace: Carex aff. cirrhosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinea aculeata replace: Cassinia aculeata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinea trinervia replace: Cassinia trinerva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheesemannia radicata replace: Cheesemania radicata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian brevisepala replace: Chionogentias brevisepala reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian demissa replace: Chionogentias demissa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian diemensis replace: Chionogentias diemensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian eichleri replace: Chionogentias eichleri reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian grandis replace: Chionogentias grandis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian gunniana replace: Chionogentias gunniana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian pleurogynoides replace: Chionogentias pleurogynoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentian polysperes replace: Chionogentias polysperes reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Deyeuxia lawrencii replace: Deyeuxia lawrencei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dilwynnia cinerascens replace: Dillwynia cinerascens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dilwynnia glaberrima replace: Dillwynia glaberrima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dilwynnia sericea replace: Dillwynia sericea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Disphysma crassifolium replace: Disphyma crassifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris acuminatum replace: Epacris acuminata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris petrophylla replace: Epacris petrophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eringium ovinum replace: Eryngium ovinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eringium vesiculosum replace: Eryngium vesiculosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ewartia meridithiae replace: Ewartia meredithiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia siberiana replace: Gahnia sieberiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gaimardia fitgeraldii replace: Gaimardia fitzgeraldii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynatryx pulchella replace: Gynatrix pulchella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helichrysum leucopsidum replace: Helichrysum leucopsideum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia calcycina replace: Hibbertia calycina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sibthorpoides replace: Hydrocotyle sibthorpioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Istoma fluviatilis replace: Isotoma fluviatilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus astrepus replace: Juncus astreptus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus caespiticus replace: Juncus caespiticius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus ratkwoskianus replace: Juncus ratkowskyanus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus sarophus replace: Juncus sarophorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma curtisae replace: Lepidosperma curtisiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micrantheum serpentineum replace: Micrantheum serpentinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nematolepis squameum replace: Nematolepis squamea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ourisia inegrifolia replace: Ourisia integrifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus selaginioides replace: Ozothamnus selaginoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus thyrsioides replace: Ozothamnus thyrsoideus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca verrucosus replace: Philotheca verrucosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca virgatus replace: Philotheca virgata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Picris angustifolius replace: Picris angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planocarpa pendulosa replace: Leptecophylla pendulosa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago gaudichaudiana replace: Plantago gaudichaudii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labilliardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton australiensis replace: Potamogeton australiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton crispus replace: Potamogeton crispus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton ochreatus replace: Potamogeton ochreatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton pectinatus replace: Potamogeton pectinatus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton perfoliatus replace: Potamogeton perfoliatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potomageton tricarinatus replace: Potamogeton tricarinatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudognaphalium luteo-album replace: Pseudognaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Richea curtisiae replace: Richea x curtisiae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rutidopsis multiflora replace: Rutidosis multiflora reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma dimidiata replace: Rytidosperma dimidiatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sagina diemenensis replace: Sagina diemensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sagina tadgelli replace: Sagina namadgi reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio minumus replace: Senecio minimus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio orarius replace: Senecio x orarius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporodanthus tasmanica replace: Sporadanthus tasmanicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium ericocephalum replace: Spyridium eriocephalum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium lawrencii replace: Spyridium lawrencei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia mongyyna replace: Stackhousia monogyna reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Valisneria australis replace: Vallisneria australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia megalocephala replace: Vittadinia megacephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zoysia macranthera replace: Zoysia macrantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Jordan_2007/metadata.yml b/data/Jordan_2007/metadata.yml index c298b36c7..d42e83e99 100644 --- a/data/Jordan_2007/metadata.yml +++ b/data/Jordan_2007/metadata.yml @@ -15,7 +15,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(species) %>% mutate(across(c(`leaf longevity`), replace_duplicates_with_NA)) %>% @@ -124,161 +124,161 @@ taxonomic_updates: replace: Acacia melanoxylon reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia_mucronata replace: Acacia mucronata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agastachys_odorata replace: Agastachys odorata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anodopetalum_biglandulosum replace: Anodopetalum biglandulosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Archeria_serpyllifolia replace: Archeria serpyllifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia_marginata replace: Banksia marginata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bedfordia_salicina replace: Bedfordia salicina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bellendena_montana replace: Bellendena montana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria_viscosa replace: Beyeria viscosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bursaria_spinosa replace: Bursaria spinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cenarrhenes_nitida replace: Cenarrhenes nitida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea_viscosa replace: Dodonaea viscosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus_obliqua replace: Eucalyptus obliqua reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gaultheria_hispida replace: Gaultheria hispida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptecophylla_juniperina replace: Leptecophylla juniperina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum_nitidum replace: Leptospermum nitidum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca_squarrosa replace: Melaleuca squarrosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca_glauca replace: Monotoca glauca reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nematolepis_squamea replace: Nematolepis squamea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nothofagus_cunninghamii replace: Nothofagus cunninghamii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia_argophylla replace: Olearia argophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia_persoonioides replace: Olearia persoonioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orites_acicularis replace: Orites acicularis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orites_milliganii replace: Orites milliganii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orites_revoluta replace: Orites revoluta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia_gunnii replace: Persoonia gunnii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum_bicolor replace: Pittosporum bicolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderris_apetala replace: Pomaderris apetala reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia_lanceolata replace: Tasmannia lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Telopea_truncata replace: Telopea truncata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trochocarpa_cunninghamii replace: Trochocarpa cunninghamii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria_arborescens replace: Zieria arborescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Jordan_2015/metadata.yml b/data/Jordan_2015/metadata.yml index a0aaacdfc..f93a51a2b 100644 --- a/data/Jordan_2015/metadata.yml +++ b/data/Jordan_2015/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(species) %>% mutate(across(c(`Life cycle`, `Woody or Herbaceous`), replace_duplicates_with_NA)) %>% diff --git a/data/Jordan_2020/metadata.yml b/data/Jordan_2020/metadata.yml index b39c9af7c..8987fd90b 100644 --- a/data/Jordan_2020/metadata.yml +++ b/data/Jordan_2020/metadata.yml @@ -62,7 +62,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_lobation = leaf_margin, @@ -1809,8 +1809,8 @@ substitutions: find: '?' replace: .na - trait_name: leaf_lamina_division - find: entire toothed - replace: .na + find: entire toothed + replace: .na - trait_name: leaf_cuticle_thickness_adaxial find: '?' replace: .na @@ -1875,45 +1875,45 @@ taxonomic_updates: - find: Conospermum caniculatum replace: Conospermum canaliculatum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea luffitzii replace: Grevillea lullfitzii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea quinquinervis replace: Grevillea quinquenervis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea eryeana replace: Hakea eyreana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicia ferruginiflora replace: Helicia ferruginea reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea Devil's thumb replace: Hollandaea sp. (Devils Thumb P.I.Forster+ PIF10720) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile shuttleworthia replace: Petrophile shuttleworthiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stirlingia divaricatissim replace: Stirlingia divaricatissima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Bleasdalea papuana, Lasjia erecta, Alloxylon brachycarpum diff --git a/data/Jurado_1991/metadata.yml b/data/Jurado_1991/metadata.yml index bb071c3c9..387199c46 100644 --- a/data/Jurado_1991/metadata.yml +++ b/data/Jurado_1991/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% rename(growth_form = `growth form 1=tree, 2=shrub, 3=subshrub, 4=forb, 5=grass, 6=parasite, 10=twiner`) %>% mutate( @@ -289,82 +289,82 @@ substitutions: find: <100 replace: 100--1000 taxonomic_updates: -- find: Sporobolus sp. - replace: Sporobolus sp. [Jurado_1991] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wahlenbergia sp. - replace: Wahlenbergia sp. [Jurado_1991] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Amphipogon carcinus replace: Amphipogon caricinus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachycome ciliaris var.lanuginosa replace: Brachycome ciliaris var. lanuginosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Calandrinia polyanda replace: Calandrinia polyandra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis mitchelii replace: Capparis mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia nemophila var.nemophila replace: Cassia nemophila var. nemophila reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cassia nemophila var.zygophylla replace: Cassia nemophila var. zygophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dactylotenium radulans replace: Dactyloctenium radulans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia boophtona replace: Euphorbia boophthona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea mynima replace: Hakea minyma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paractaenum nova-hollandiae replace: Paractaenum novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus maderaspatensis var.angustifol replace: Phyllanthus maderaspatensis var. angustifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rhyncosia minima replace: Rhynchosia minima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp1. replace: Sida sp. 1 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp2. replace: Sida sp. 2 (Marandoo; M.Trudgen 10976) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp3. replace: Sida sp. [Sida sp3.; Jurado_1991] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Sporobolus sp. + replace: Sporobolus sp. [Jurado_1991] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Vittadina eremaea replace: Vittadinia eremaea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Wahlenbergia sp. + replace: Wahlenbergia sp. [Jurado_1991] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Jurado_1992/metadata.yml b/data/Jurado_1992/metadata.yml index 867d3f442..067b51247 100644 --- a/data/Jurado_1992/metadata.yml +++ b/data/Jurado_1992/metadata.yml @@ -90,40 +90,40 @@ taxonomic_updates: - find: Capparis mitchelli replace: Capparis mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia nemophylla replace: Cassia nemophila reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichantium sericeum replace: Dichanthium sericeum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio gregori replace: Senecio gregorii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. 2 replace: Sida sp. 2 (Marandoo; M.Trudgen 10976) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobulus actinocladus replace: Sporobolus actinocladus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobulus caroli replace: Sporobolus caroli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Steptoglossa adora replace: Streptoglossa odora reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadina eremaea replace: Vittadinia eremaea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: germination speed (days to 50% germination) diff --git a/data/Kanowski_2000/metadata.yml b/data/Kanowski_2000/metadata.yml index 568e74d8c..fc1361afb 100644 --- a/data/Kanowski_2000/metadata.yml +++ b/data/Kanowski_2000/metadata.yml @@ -18,7 +18,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `Co` = ifelse(`Co`==0.1,NA,`Co`), @@ -758,10 +758,6 @@ traits: 2011. substitutions: .na taxonomic_updates: -- find: Carnarvonia sp - replace: Carnarvonia sp. [Kanowski_2000] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: 'Argyrodendron #576' replace: 'Argyrodendron sp. [Argyrodendron #576; Kanowski_2000]' reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -780,31 +776,35 @@ taxonomic_updates: - find: Bielschmiedia bancroftii replace: Beilschmiedia bancroftii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bielschmiedia brunnea replace: Beilschmiedia brunnea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bielschmiedia collina replace: Beilschmiedia collina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bielschmiedia recurva replace: Beilschmiedia recurva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bielschmiedia tooram replace: Beilschmiedia tooram reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Carnarvonia sp + replace: Carnarvonia sp. [Kanowski_2000] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cryptocarya mackinonniana replace: Cryptocarya mackinnoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus augustifolius replace: Elaeocarpus angustifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: 'Euodia #305' replace: 'Euodia sp. [Euodia #305; Kanowski_2000]' reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -813,44 +813,44 @@ taxonomic_updates: - find: Euroshinus falcata replace: Euroschinus falcata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia hunsteinii replace: Garcinia sp. aff. G. hunsteinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardinia ovularis replace: Gardenia ovularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guoia acutifolia replace: Guioa acutifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maclura conchinchinensis replace: Maclura cochinchinensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcotoechia rfk/2183 replace: Sarcotoechia sp. (=RFK/2183) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos conchinchinensis var gittinsii replace: Symplocos cochinchinensis var. gittinsii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos conchinchinensis var glaberrima replace: Symplocos cochinchinensis var. glaberrima reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocus conchinchinesis... var pilosiuscula replace: Symplocos cochinchinensis var. pilosiuscula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Syzgium papyraceum replace: Syzygium papyraceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Turbina (vine) replace: Turbina sp. [Turbina (vine); Kanowski_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -859,6 +859,6 @@ taxonomic_updates: - find: Waterhousia unipunctata replace: Waterhousea unipunctata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Keighery_2004/metadata.yml b/data/Keighery_2004/metadata.yml index 02293b8cf..2fcbaf5e3 100644 --- a/data/Keighery_2004/metadata.yml +++ b/data/Keighery_2004/metadata.yml @@ -18,7 +18,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate( flowering_time = ifelse(is.na(data$`flowering month + custom_R_code: data %>% mutate( flowering_time = ifelse(is.na(data$`flowering month begin`), NA, sprintf("%s-%s",month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary())) collection_date: unknown/2004 diff --git a/data/Kew_2019_1/metadata.yml b/data/Kew_2019_1/metadata.yml index f0979e240..b176a3fd6 100644 --- a/data/Kew_2019_1/metadata.yml +++ b/data/Kew_2019_1/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( ref_year = stringr::str_extract(refshort, "(?% mutate( protcontentval = protcontentval/100, diff --git a/data/Kew_2019_3/metadata.yml b/data/Kew_2019_3/metadata.yml index 3b53a6182..4196afccc 100644 --- a/data/Kew_2019_3/metadata.yml +++ b/data/Kew_2019_3/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( planttype = ifelse(planttype == "-", NA, planttype), diff --git a/data/Kew_2019_4/metadata.yml b/data/Kew_2019_4/metadata.yml index 608e66d58..5e5394b1d 100644 --- a/data/Kew_2019_4/metadata.yml +++ b/data/Kew_2019_4/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( oilcontentval = oilcontentval/100, diff --git a/data/Kew_2019_5/metadata.yml b/data/Kew_2019_5/metadata.yml index ff1fbf062..5d367cf66 100644 --- a/data/Kew_2019_5/metadata.yml +++ b/data/Kew_2019_5/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( ref_year = stringr::str_extract(refshort, "(?% mutate( germination = germination_percent/100, @@ -67,11 +67,11 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia collina subsp. Northwest Tasmania (A.Visom 216) replace: Euphrasia collina subsp. Northwest Tasmania (A.Visou 216) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: seed_germination_treatment diff --git a/data/Kirkpatrick_2020/metadata.yml b/data/Kirkpatrick_2020/metadata.yml index ffbe32efc..522671838 100644 --- a/data/Kirkpatrick_2020/metadata.yml +++ b/data/Kirkpatrick_2020/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Wind = stringr::str_replace(Wind,"y", "xxx"), diff --git a/data/Kocacinar_2003/metadata.yml b/data/Kocacinar_2003/metadata.yml index dc680d9b5..11a1f6708 100644 --- a/data/Kocacinar_2003/metadata.yml +++ b/data/Kocacinar_2003/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(location = "University of Toronto, Ontario") ' collection_date: unknown/2003 diff --git a/data/Kooyman_2011/metadata.yml b/data/Kooyman_2011/metadata.yml index 7ad74bdcb..fe8bacfec 100644 --- a/data/Kooyman_2011/metadata.yml +++ b/data/Kooyman_2011/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(`Species_reconciled with updates and additions`) %>% mutate(across(c(`seed length maximum (mm)`,`seed length minimum (mm)`, @@ -349,6 +349,11 @@ substitutions: find: NA replace: .na taxonomic_updates: +- find: Abutilon Mataranka + replace: Abutilon sp. Mataranka (R.M.Barker 877) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Abutilon aff. subviscosum replace: Abutilon sp. [Abutilon aff. subviscosum; Kooyman_2011] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -358,27 +363,22 @@ taxonomic_updates: replace: Abutilon indicum var. australiense reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas -- find: Abutilon Mataranka - replace: Abutilon sp. Mataranka (R.M.Barker 877) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Abutilon oxycarpum-acutatum replace: Abutilon oxycarpum var. acutatum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia pennata-kerrii replace: Acacia pennata subsp. kerrii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia spirorbis-solandri replace: Acacia spirorbis subsp. solandri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acalypha Big-Scrub replace: Acalypha sp. [Acalypha Big-Scrub; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -387,204 +387,204 @@ taxonomic_updates: - find: Acradenia franklinae replace: Acradenia frankliniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia Batavia-Downs replace: Acronychia sp. (Batavia Downs J.R.Clarkson+ 8511) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Actephila Possum-Scrub + replace: Actephila sp. (Possum Scrub P.I.Forster PIF14372) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Actephila petiolaris_jagonis replace: Actephila petiolaris subsp. jagonis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Actephila petiolaris_petiolaris replace: Actephila petiolaris subsp. petiolaris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Actephila Possum-Scrub - replace: Actephila sp. (Possum Scrub P.I.Forster PIF14372) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: subspecies - find: Adenia heterophylla-australis replace: Adenia heterophylla subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Adenia heterophylla-heterophylla replace: Adenia heterophylla subsp. heterophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Aglaia Silver-Plains replace: Aglaia sp. (Silver Plains L.J.Webb+ 9734) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia MtLewis replace: Aidia sp. (Mt Lewis) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ailanthus integrifolia-integrifolia replace: Ailanthus integrifolia subsp. integrifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alangium Claudie-River replace: Alangium sp. (Claudie River B.P.Hyland 2682RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium villosum-polyosmoides replace: Alangium villosum subsp. polyosmoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alangium villosum-tomentosum replace: Alangium villosum subsp. tomentosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Albizia Sir-Charles-Hardy replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia Windsor-Tableland replace: Albizia sp. Windsor Tableland (B.Gray 2181) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia Forty-Mile-Scrub replace: Alphitonia sp. (Forty Mile Scrub BH 25763RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia Kimberley replace: Alphitonia sp. (Kimberley BH 25117RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia spectabilis_ophioxyloides replace: Alstonia spectabilis subsp. ophioxyloides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alstonia spectabilis_spectabilis replace: Alstonia spectabilis subsp. spectabilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Antirhea Lower-Downey replace: Antirhea sp. (Lower Downey) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea MtLewis replace: Antirhea sp. (Mt Lewis BG 5733) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ardisia Sth-Mary replace: Ardisia sp. (South Mary LA B.P.Hyland 8778) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum Babinda replace: Argophyllum sp. Babinda (L.S.Smith 10213) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argophyllum Koolmoon-Creek replace: Argophyllum sp. (Koolmoon Creek B.Gray 1040) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Argyrodendron actinophyllum_actinophyllum - replace: Argyrodendron actinophyllum subsp. actinophyllum - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Argyrodendron actinophyllum_diversifolium - replace: Argyrodendron actinophyllum subsp. diversifolium - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: species - find: Argyrodendron Boonjee replace: Argyrodendron sp. 'Boonjee' (B.Hyland 2139 RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron Karnak replace: Argyrodendron sp. (Karnak P.I.Forster+ PIF10711) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron KinKin replace: Argyrodendron sp. (Kin Kin W.D.Francis AQ81198) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron MtHaig replace: Argyrodendron sp. Mt Haig (L.S.Smith+ 14307) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Argyrodendron Whitsundays + replace: Argyrodendron sp. Whitsundays (W.J.McDonald+ 5831) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-10) + taxonomic_resolution: species +- find: Argyrodendron Whyanbeel + replace: Argyrodendron sp. 'Whyanbeel' (B.Hyland 1106 RFK) + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species +- find: Argyrodendron actinophyllum_actinophyllum + replace: Argyrodendron actinophyllum subsp. actinophyllum + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies +- find: Argyrodendron actinophyllum_diversifolium + replace: Argyrodendron actinophyllum subsp. diversifolium + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies - find: Argyrodendron sp. Kin Kin (W.D.Francis AQ 81198) replace: Argyrodendron sp. Kin Kin (W.D.Francis AQ81198) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Mt Haig ( L.S.Smith+ 14307) replace: Argyrodendron sp. Mt Haig (L.S.Smith+ 14307) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK 1106) replace: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK1106) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Argyrodendron Whitsundays - replace: Argyrodendron sp. Whitsundays (W.J.McDonald+ 5831) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Argyrodendron Whyanbeel - replace: Argyrodendron sp. 'Whyanbeel' (B.Hyland 1106 RFK) - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristolochia pubera_aromatica replace: Aristolochia pubera var. aromatica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Aristolochia pubera_pubera replace: Aristolochia pubera var. pubera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Arytera Dryander replace: Arytera sp. Dryander Creek (P.R.Sharpe 4184) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Athrotaxis cuppressoides replace: Athrotaxis cupressoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Athrotaxis laxifolia replace: Arthrotaxis laxifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atractocarpus fitzalanii-fitzalanii replace: Atractocarpus fitzalanii subsp. fitzalanii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atractocarpus fitzalanii-tenuipes replace: Atractocarpus fitzalanii subsp. tenuipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Backhousia Belgamba replace: Backhousia sp. [Backhousia Belgamba; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -594,109 +594,109 @@ taxonomic_updates: replace: Barringtonia acutangula subsp. acutangula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Beyeria viscosa-viscosa replace: Beyeria viscosa var. viscosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bombax ceiba_leiocarpum replace: Bombax ceiba var. leiocarpum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachychiton Ormeau replace: Brachychiton sp. (Ormeau L.H.Bird AQ435851) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brombya Gap-Creek replace: Brombya sp. Gap Creek (L.S.Smith 11116) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brownlowia argentea replace: Brownlowia argentata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bubbia queenslandiana-australis replace: Bubbia queenslandiana subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bubbia queenslandiana-queenslandiana replace: Bubbia queenslandiana subsp. queenslandiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Callerya Barratt-Creek replace: Callerya sp. Barratt Creek (G.Sankowsky 428) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callerya Beatrice-Creek replace: Callerya sp. (Beatrice Creek L.S.Smith 10487) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canarium australianum-australianum replace: Canarium australianum var. australianum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Capparis Iron-Range replace: Capparis sp. Iron Range (B.Hyland 16395) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carnarvonia araliifolia-araliifolia replace: Carnarvonia araliifolia var. araliifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Carnarvonia araliifolia-montana replace: Carnarvonia araliifolia var. montana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Casearia Mission-Beach replace: Casearia sp. (Mission Beach B.P.Hyland 773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Cassia brewsteri-brewsteri - replace: Cassia brewsteri var. brewsteri - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Varietas -- find: Cassia brewsteri-tomentella - replace: Cassia brewsteri var. tomentella - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Cassia Kalpowar replace: Cassia sp. (Kalpowar D.G.Fell+ DF2769) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia Paluma-Range replace: Cassia sp. Paluma Range (G.Sankowsky+ 450) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cassia brewsteri-brewsteri + replace: Cassia brewsteri var. brewsteri + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: varietas +- find: Cassia brewsteri-tomentella + replace: Cassia brewsteri var. tomentella + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: varietas - find: Cassinia (Ozothamnus) straminae replace: Cassinia straminea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia (Ozothamnus) telfordii replace: Cassinia telfordii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cathormion umbellatum-moniliforme replace: Cathormion umbellatum subsp. moniliforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chionanthus Little-Pine replace: Chionanthus sp. [Chionanthus Little-Pine; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -705,329 +705,329 @@ taxonomic_updates: - find: Chionanthus sp. [Chionanthus Little-Pine] replace: Linociera sp. (Little Pine LA BH 2520RFK) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissampelos pareira-hirsuta replace: Cissampelos pareira var. hirsuta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Claoxylon tenerifolium_boreale replace: Claoxylon tenerifolium subsp. boreale reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Claoxylon tenerifolium_tenerifolium replace: Claoxylon tenerifolium subsp. tenerifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Clerodendrum floribundum_coriaceum replace: Clerodendrum floribundum var. coriaceum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Clerodendrum floribundum_floribundum replace: Clerodendrum floribundum var. floribundum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Clerodendrum floribundum_ovatum replace: Clerodendrum floribundum var. ovatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Clerodendrum longiflorum_glabrum replace: Clerodendrum longiflorum var. glabrum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Codiaeum variegatum-moluccanum replace: Codiaeum variegatum var. moluccanum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Comespermum volubile replace: Comesperma volubile reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corynocarpus rupestris-arborescens replace: Corynocarpus rupestris subsp. arborescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corynocarpus rupestris-rupestris replace: Corynocarpus rupestris subsp. rupestris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Crudia Archer-River replace: Crudia sp. (Archer River) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya Boonjee replace: Cryptocarya sp. Boonjee (B.Hyland 25794RFK) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cryptocarya Worlds-End-Pocket + replace: Cryptocarya sp. [Cryptocarya Worlds-End-Pocket; Kooyman_2011] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-10) + taxonomic_resolution: genus - find: Cryptocarya triplinervis-pubens replace: Cryptocarya triplinervis var. pubens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptocarya triplinervis-riparia replace: Cryptocarya triplinervis var. riparia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptocarya triplinervis-triplinervis replace: Cryptocarya triplinervis var. triplinervis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas -- find: Cryptocarya Worlds-End-Pocket - replace: Cryptocarya sp. [Cryptocarya Worlds-End-Pocket; Kooyman_2011] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-10) - taxonomic_resolution: genus + taxonomic_resolution: varietas - find: Cucumis Little-Annan-River replace: Cucumis sp. (Little Annan River B.Gray 101) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cupaniopsis flagelliformis-australis replace: Cupaniopsis flagelliformis var. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dalbergia densa-australis replace: Dalbergia densa var. australis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dalbergia densa-densa replace: Dalbergia densa var. densa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Denhamia Jardine-River replace: Denhamia sp. (Jardine River B.P.Hyland 10250) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia pittosporoides-angustifolia replace: Denhamia pittosporoides subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Denhamia pittosporoides-pittosporoides replace: Denhamia pittosporoides subsp. pittosporoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Derris Claudie-River replace: Derris sp. (Claudie River L.J.Webb+ 8348) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris Daintree replace: Derris sp. (Daintree D.E.Boyland+ 469) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris Wenlock-River replace: Derris sp. (Wenlock River BH 21082V) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dioscorea bulbifera-bulbifera replace: Dioscorea bulbifera var. bulbifera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Diospyros Baird replace: Diospyros sp. Baird LA (B.P.Hyland 9374) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros Bamaga replace: Diospyros sp. (Bamaga) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Diospyros elllipticifolia-ebenus - replace: Diospyros ellipticifolia var. ebenus - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Diospyros Kuranda replace: Diospyros sp. (Kuranda) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros Millaa-Millaa replace: Diospyros sp. (Millaa Millaa L.W.Jessup 515) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros MtLewis replace: Diospyros sp. (Mt Lewis L.S.Smith 10107) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros MtSpurgeon replace: Diospyros sp. (Mt Spurgeon CTW 10677) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros MtWhite replace: Diospyros sp. (Mt White P.I.Forster PIF14415) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros Swipers-Flat replace: Diospyros sp. (Swipers Flat) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Diospyros elllipticifolia-ebenus + replace: Diospyros ellipticifolia var. ebenus + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) + taxonomic_resolution: varietas - find: Dodonaea lanceolata-lanceolata replace: Dodonaea lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea lanceolata-subsessilifolia replace: Dodonaea lanceolata var. subsessilifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea viscosa-viscosa replace: Dodonaea viscosa subsp. viscosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Dysoxylum actutangulatum - replace: Dysoxylum acutangulum - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: subspecies - find: Dysoxylum Deepwater replace: Dysoxylum sp. [Dysoxylum Deepwater; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Elaeocarpus largiflorens-largiflorens - replace: Elaeocarpus largiflorens subsp. largiflorens - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Elaeocarpus largiflorens-retinervis - replace: Elaeocarpus largiflorens subsp. retinervis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies +- find: Dysoxylum actutangulatum + replace: Dysoxylum acutangulum + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Elaeocarpus Mossman-Bluff replace: Elaeocarpus sp. (Mossman Bluff D.G.Fell DF1666) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus MtBellenden-Ker replace: Elaeocarpus sp. Mt Bellenden Ker (L.J.Brass 18336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus MtSpurgeon replace: Elaeocarpus sp. (Mt Spurgeon BH 2907RFK) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus Windsor-Tableland replace: Elaeocarpus sp. (Windsor Tableland L.W.Jessup+ GJM1378) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Elaeocarpus largiflorens-largiflorens + replace: Elaeocarpus largiflorens subsp. largiflorens + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies +- find: Elaeocarpus largiflorens-retinervis + replace: Elaeocarpus largiflorens subsp. retinervis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies - find: Elaeodendron australe_australe replace: Elaeodendron australe var. australe reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Endiandra monothyra-monothyra replace: Endiandra monothyra subsp. monothyra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Endiandra monothyra-trichophylla replace: Endiandra monothyra subsp. trichophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Endiandra muelleri-bracteata replace: Endiandra muelleri subsp. bracteata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erythrina Croftby replace: Erythrina sp. (Croftby P.I.Forster+ PIF6209) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum Brewer replace: Erythroxylum sp. Brewer LA (B.Hyland 13373) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum Mosquito-Point replace: Erythroxylum sp. (Mosquito Point J.R.Clarkson+ 9991) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum Splityard-Creek replace: Erythroxylum sp. (Splityard Creek L.Pedley 5360) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia tannensis_eremophila replace: Euphorbia tannensis subsp. eremophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Everistia vacciniifolia_nervosa replace: Everistia vacciniifolia var. nervosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Everistia vacciniifolia_vacciniifolia replace: Everistia vacciniifolia var. vacciniifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus aculeata_indecora replace: Ficus aculeata var. indecora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus cumingii-androbrota replace: Ficus cumingii var. androbrota reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus melinocarpa-hololampra replace: Ficus melinocarpa var. hololampra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus rubiginosa_glabrescens replace: Ficus rubiginosa f. glabrescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Ficus rubiginosa_rubiginosa replace: Ficus rubiginosa f. rubiginosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Ficus virens-sublanceolata replace: Ficus virens var. sublanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus virens-virens replace: Ficus virens var. virens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Fitzalania Gregory_River replace: Meiogyne sp. [Fitzalania Gregory_River; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -1042,70 +1042,70 @@ taxonomic_updates: replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flindersia laevicarpa-laevicarpa replace: Flindersia laevicarpa var. laevicarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Flueggea Biggenden-leucopyrus replace: Flueggea leucopyrus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia Laura replace: Galactia sp. (Laura J.C.Tothill JT53A) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia Claudie-River replace: Garcinia sp. Claudie River (L.J.Brass 19658) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia Davies-Creek replace: Garcinia sp. (Davies Creek JGT 14745) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia Mossman replace: Garcinia sp. (Mossman) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia sp. Davies Creek (JGT 14745) replace: Garcinia sp. (Davies Creek JGT 14745) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geijera salicifolia-latifolia replace: Geijera salicifolia var. latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Geijera salicifolia-salicifolia replace: Geijera salicifolia var. salicifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion harveyanum-harveyanum replace: Glochidion harveyanum var. harveyanum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion harveyanum-pubescens replace: Glochidion harveyanum var. pubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion sessiliflorum-pedicellatum replace: Glochidion sessiliflorum var. pedicellatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glochidion sessiliflorum-sessiliflorum replace: Glochidion sessiliflorum var. sessiliflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Glycine spp replace: Glycine sp. [Kooyman_2011] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1115,221 +1115,221 @@ taxonomic_updates: replace: Gossia sp. Green Bark (B.Hyland 25370RFK) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus submontanus_sessiliflorus replace: Haplostichanthus submontanus subsp. sessiliflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Haplostichanthus submontanus_submontanus replace: Haplostichanthus submontanus subsp. submontanus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hedraianthera Mossman replace: Hedraianthera sp. (Mossman) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea Pinnacle-Rock replace: Hollandaea sp. Pinnacle Rock Track (P.I.Forster+ PIF10714) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalium Johnstone-River replace: Homalium sp. Johnstone River (N.Michael 176) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hoya australis-australis replace: Hoya australis subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hoya australis-sanae replace: Hoya australis subsp. sanae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hoya australis-tenuipes replace: Hoya australis subsp. tenuipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Ilex arnhemensis-ferdinandi - replace: Ilex arnhemensis subsp. ferdinandi - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ilex Gadgarra replace: Ilex sp. 'Gadgarra' (B.P.Hyland RFK 2011) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ilex arnhemensis-ferdinandi + replace: Ilex arnhemensis subsp. ferdinandi + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies - find: Indigator fordii replace: Indagator fordii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Ipomoea aculeata-mollissima - replace: Ipomoea aculeata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea Merluna replace: Ipomoea sp. [Ipomoea Merluna; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Ipomoea aculeata-mollissima + replace: Ipomoea aculeata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Ipomoea pes-caprae-brasiliensis replace: Ipomoea pes-caprae subsp. brasiliensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jagera pseudorhus-integerrima replace: Jagera pseudorhus var. integerrima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Jagera pseudorhus-pseudorhus replace: Jagera pseudorhus var. pseudorhus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Jasminum aemulum-brassii replace: Jasminum aemulum var. brassii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Jasminum didymum (complex) replace: Jasminum didymum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum didymum-didymum replace: Jasminum didymum subsp. didymum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jasminum didymum-racemosum replace: Jasminum didymum subsp. racemosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jasminum simplicifolium-australiense replace: Jasminum simplicifolium subsp. australiense reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lagarostrobus franklinii replace: Lagarostrobos franklinii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leionema elatius-beckleri replace: Leionema elatius subsp. beckleri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lenbrassia australiana_australiana replace: Lenbrassia australiana var. australiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lenbrassia australiana_glabrescens replace: Lenbrassia australiana var. glabrescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lenwebbia Blackall-Range replace: Lenwebbia sp. Blackall Range (P.R.Sharpe 5387) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lenwebbia Main-Range replace: Lenwebbia sp. (Main Range P.R.Sharpe+ 4877) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepiderema Impulse-Creek replace: Lepiderema sp. Impulse Creek (A.B.Pollock 73) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lamingtonensis replace: Leucopogon sp. (Lamington G.Leiper AQ633386) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon malayanus-novoguineensis replace: Leucopogon malayanus subsp. novoguineensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucopogon sp. Lamington (G.Leiper AQ 633386) replace: Leucopogon sp. Lamington (G.Leiper AQ633386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macaranga involucrata_mallotoides replace: Macaranga involucrata var. mallotoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Maesa dependens-dependens replace: Maesa dependens var. dependens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Maesa dependens-pubescens replace: Maesa dependens var. pubescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Marsdenia llisae replace: Marsdenia liisae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia viridiflora-tropica replace: Marsdenia viridiflora subsp. tropica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Marsdenia viridiflora-viridiflora replace: Marsdenia viridiflora subsp. viridiflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Maytenus Windsor-Tableland replace: Maytenus sp. Windsor Tableland (B.Hyland 3416RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma East-Mulgrave replace: Medicosma sp. (East Mulgrave River) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma Karnak replace: Medicosma sp. (Karnak P.I.Forster+ PIF15541) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma Mt_Mellum replace: Medicosma sp. Mt Mellum (P.I.Forster PIF25572) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne cylindrocarpa_cylindrocarpa replace: Meiogyne cylindrocarpa subsp. cylindrocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Meiogyne cylindrocarpa_trichocarpa replace: Meiogyne cylindrocarpa subsp. trichocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Meiogyne sp. [Fitzalania Gregory_River] replace: Meiogyne sp. [Meiogyne sp. [Fitzalania Gregory_River]; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1338,82 +1338,82 @@ taxonomic_updates: - find: Melaleuca recurvus replace: Melaleuca recurva reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca salignus replace: Melaleuca saligna reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca styphellioides replace: Melaleuca styphelioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodinus acutifolius replace: Melodinus acutiflorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Merremia umbellata-orientalis replace: Merremia umbellata subsp. orientalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mesua Boonjee replace: Mesua sp. (Boonjee AKI 1218) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua sp. Boonjee (A.K. Irvine 1218) replace: Mesua sp. Boonjie (A.K.Irvine 1218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Millettia McIlwraith replace: Millettia sp. (McIlwraith) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mischocarpus pyriformis-pyriformis replace: Mischocarpus pyriformis subsp. pyriformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mischocarpus pyriformis-retusus replace: Mischocarpus pyriformis subsp. retusus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Morinda Altanmoui-Range replace: Morinda sp. (Altanmoui Range B.P.Hyland 6323) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Morinda Iron-Range + replace: Morinda sp. (Iron Range) + reason: match_18. Automatic alignment with infraspecific canonical name in APNI + when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Morinda citrifolia-bracteata replace: Morinda citrifolia var. bracteata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Morinda citrifolia-citrifolia replace: Morinda citrifolia var. citrifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas -- find: Morinda Iron-Range - replace: Morinda sp. (Iron Range) - reason: match_18. Automatic alignment with infraspecific canonical name in APNI - when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Mucuna diabolica-kenneallyi replace: Mucuna diabolica subsp. kenneallyi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myristica lancifolia_australiana replace: Myristica lancifolia subsp. australiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myrsine MtBartleFrere replace: Rapanea sp. (Mt Bartle Frere C.T.White 1279) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine MtHaig replace: Myrsine sp. [Myrsine MtHaig; Kooyman_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1422,357 +1422,366 @@ taxonomic_updates: - find: Myrsine Zarda replace: Rapanea sp. (Zarda LA B.P.Hyland 6898) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Niemeyera Churchill-Creek replace: Niemeyera sp. (Churchill Creek) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Niemeyera MtLewis replace: Niemeyera sp. Mt Lewis (A.K.Irvine 1402) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea Elcho-Island replace: Notelaea sp. (Elcho Island C.R.Dunlop 7597) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea sp. Elcho Island (C. R. Dunlop 7597) replace: Notelaea sp. Elcho Island (C.R.Dunlop 7597) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea venosava replace: Notelaea venosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orites Devils-Thumb replace: Orites sp. (Devils Thumb) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Owenia Xreliqua replace: Owenia x reliqua reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandorea Ipswich replace: Pandorea sp. (Ipswich K.A.Williams 86020) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parsonsia purparescens replace: Parsonsia purpurascens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora aurantia-aurantia replace: Passiflora aurantia var. aurantia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Phaerosphaera hookeriana replace: Pherosphaera hookeriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilidiostigma MtLewis replace: Pilidiostigma sp. (Mt Lewis G.P.Guymer 2024) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Piper hederaceum-hederaceum replace: Piper hederaceum var. hederaceum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Piper hederaceum-longiorispicum replace: Piper hederaceum var. longiorispicum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Planchonella Mt Lewis replace: Planchonella sp. Mt. Lewis (B.P.Hyland 579) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella pohlmaniana-pohlmaniana replace: Planchonella pohlmaniana var. pohlmaniana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Polyalthia Wyvuri replace: Polyalthia sp. (Wyvuri B.P.Hyland RFK2632) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma MtBellenden-Ker replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma MtLewis replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. Mt Lewis (B.Hyland RFK25241) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuduvaria mulgraveana-glabrescens replace: Pseuduvaria mulgraveana var. glabrescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pseuduvaria mulgraveana-mulgraveana replace: Pseuduvaria mulgraveana var. mulgraveana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Psychotria Danbulla replace: Psychotria sp. (Danbulla S.T.Blake 15262) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria MtLewis replace: Psychotria sp. Mt Lewis (V.K.Moriarty 2445) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria Pajinka replace: Psychotria sp. (Pajinka) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria Pinnacle-Rock replace: Psychotria sp. (Pinnacle Rock) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria Shute-Harbour replace: Psychotria sp. (Shute Harbour L.J.Webb+ 7916) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Psychotria sp. (Daintree N.P.) - replace: Psychotria sp. Daintree NP (P.I.Forster+ PIF21974) - reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name - in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria Utchee-Creek replace: Psychotria sp. (Utchee Creek) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Psychotria sp. (Daintree N.P.) + replace: Psychotria sp. Daintree NP (P.I.Forster+ PIF21974) + reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name + in APC accepted when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Psydrax Berrigurra-Station replace: Canthium sp. (Berrigurra Station E.R.Anderson 2829) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species -- find: Psydrax odorata-arnhemica - replace: Psydrax odorata subsp. arnhemica - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Psydrax odorata-australiana - replace: Psydrax odorata subsp. australiana - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: species - find: Psydrax Thornton-Peak replace: Canthium sp. (Thornton Peak H.Flecker NQNC7110) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax Thursday-Island replace: Canthium sp. (Thursday Island E.Cowley 10) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax Weipa replace: Canthium sp. (Weipa) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Psydrax odorata-arnhemica + replace: Psydrax odorata subsp. arnhemica + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies +- find: Psydrax odorata-australiana + replace: Psydrax odorata subsp. australiana + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: subspecies - find: Quassia Barong replace: Quassia sp. Barong (B.Gray 742) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia Mt-Goonanaman replace: Quassia sp. (Mt Goonanaman J.Randall 738) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia MtNardi replace: Quassia sp. Mt Nardi (B.L.Walker AQ330746) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia Tozer-Range replace: Quassia sp. (Tozer Range L.J.Brass 19393) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia Boonjee replace: Randia sp. (Boonjee) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia Gordon-Creek replace: Randia sp. Gordon Creek (B.P.Hyland 15252) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora apiculatum replace: Rhizophora apiculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodomyrtus trineura-capensis replace: Rhodomyrtus trineura subsp. capensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhodomyrtus trineura-trineura replace: Rhodomyrtus trineura subsp. trineura reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhysotoechia bifoliolata-bifoliolata replace: Rhysotoechia bifoliolata subsp. bifoliolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhysotoechia bifoliolata-nitida replace: Rhysotoechia bifoliolata subsp. nitida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Richea pandanifolia_pandanifoia replace: Richea pandanifolia subsp. pandanifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Richea pandanifolia_ramulosa replace: Richea pandanifolia subsp. ramulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rubiaceae Gen. Nov. sp. (Shute Harbour DAH Q811) replace: Gen. (AQ520454) sp. Shute Harbour (D.A.Halford Q811) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubiaceae Shute-Harbour replace: Gen. (AQ520454) sp. Shute Harbour (D.A.Halford Q811) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus moluccanus-moluccanus replace: Rubus moluccanus var. moluccanus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rubus moluccanus-trilobus replace: Rubus moluccanus var. trilobus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Samadera sp. Mt Goonanaman (J.Randall 738) replace: Samadera sp. Mt Goonaneman (J.Randall 738) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcopteryx McIlwraith-Range replace: Sarcopteryx sp. (McIlwraith Range BH 3261RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcostemma viminale-brunonianum replace: Sarcostemma viminale subsp. brunonianum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schyphiphora hydrophyllaceae replace: Scyphiphora hydrophylacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Shonia tristigma_borealis replace: Shonia tristigma subsp. borealis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sloanea australis-parviflora replace: Sloanea australis subsp. parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solanum Bamaga replace: Solanum sp. (Bamaga V.Scarth-Johnson 1117A) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum Bellenden-Ker replace: Solanum sp. (Bellenden Ker) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum stupefacatum replace: Solanum stupefactum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Steganthera laxiflora_laxiflora replace: Steganthera laxiflora subsp. laxiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Steganthera laxiflora_lewisensis replace: Steganthera laxiflora subsp. lewisensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Stenocarpus Hinchinbrook replace: Stenocarpus sp. (Hinchinbrook Island F.D.Hockings AQ229860) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus sp. Hinchinbrook Is. (F.D.Hocking AQ229860) replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stephania japonica-discolor replace: Stephania japonica var. discolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stephania japonica-japonica replace: Stephania japonica var. japonica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stephania japonica-timorensis replace: Stephania japonica var. timorensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sterculia Annan-River replace: Sterculia sp. Annan River (L.J.Brass 20319) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos Big-Tableland replace: Symplocos sp. (Big Tableland BH 10582) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Symplocos MtFinnigan + replace: Symplocos sp. (Mt Finnigan L.J.Brass 20129) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) + taxonomic_resolution: species +- find: Symplocos North-Mary + replace: Symplocos sp. (North Mary B.Gray 2543) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Symplocos cochinchinensis-thwaitesii-gittonsii replace: Symplocos sp. [Symplocos cochinchinensis-thwaitesii-gittonsii; Kooyman_2011] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Symplocos cochinchinensis-thwaitesii-glaberrima replace: Symplocos sp. [Symplocos cochinchinensis-thwaitesii-glaberrima; Kooyman_2011] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Symplocos cochinchinensis-thwaitesii-pilosiuscula replace: Symplocos sp. [Symplocos cochinchinensis-thwaitesii-pilosiuscula; Kooyman_2011] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Symplocos gittinsii / Symplocos thwaitesii replace: Symplocos sp. [Symplocos gittinsii / Symplocos thwaitesii; Kooyman_2011] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -1783,15 +1792,6 @@ taxonomic_updates: reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Symplocos MtFinnigan - replace: Symplocos sp. (Mt Finnigan L.J.Brass 20129) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species -- find: Symplocos North-Mary - replace: Symplocos sp. (North Mary B.Gray 2543) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-10) - taxonomic_resolution: Species - find: Symplocos puberula / Symplocos thwaitesii replace: Symplocos sp. [Symplocos puberula / Symplocos thwaitesii; Kooyman_2011] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -1801,212 +1801,212 @@ taxonomic_updates: replace: Symplocos stawellii var. montana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos stawellii-stawellii replace: Symplocos stawellii var. stawellii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Synoum glandulosum_glandulosum replace: Synoum glandulosum subsp. glandulosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Synoum glandulosum_paniculosum replace: Synoum glandulosum subsp. paniculosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium Bora replace: Syzygium sp. (Bora LA) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Syzygium Noah-Creek + replace: Syzygium sp. (Noah Creek) + reason: match_18. Automatic alignment with infraspecific canonical name in APNI + when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Syzygium forte-forte replace: Syzygium forte subsp. forte reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium forte-potamophilum replace: Syzygium forte subsp. potamophilum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium hemilamprum-hemilamprum replace: Syzygium hemilamprum subsp. hemilamprum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium hemilamprum-orophilum replace: Syzygium hemilamprum subsp. orophilum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Syzygium Noah-Creek - replace: Syzygium sp. (Noah Creek) - reason: match_18. Automatic alignment with infraspecific canonical name in APNI - when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: subspecies - find: Syzygium wilsonii-cryptophlebium (epigaeum?) replace: Syzygium wilsonii subsp. cryptophlebium reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium wilsonii-wilsonii replace: Syzygium wilsonii subsp. wilsonii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tarenna dallachiana_expandens replace: Tarenna dallachiana subsp. expandens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tasmannia MtBellenden-Ker replace: Tasmannia sp. Mt Bellenden Ker (J.R.Clarkson 6571) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia xerophila-robusta replace: Tasmannia xerophila subsp. robusta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tecomanthe Roaring-Meg replace: Tecomanthe sp. 'Roaring Meg' (L.J.Brass 20326) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia aridicola-chillagoensis replace: Terminalia aridicola subsp. chillagoensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Terminalia oblongata-oblongata replace: Terminalia oblongata subsp. oblongata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Terminalia oblongata-volucris replace: Terminalia oblongata subsp. volucris reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Thespesia lampas-thespesioides replace: Thespesia lampas var. thespesioides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Timonius Claudie-River replace: Timonius sp. (Claudie River) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trema tomentosa-tomentosa replace: Trema tomentosa var. tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trema tomentosa-viridis replace: Trema tomentosa var. viridis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trichosanthes Mt-Lewis replace: Trichosanthes sp. Mt Lewis reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trophis scandens-scandens replace: Trophis scandens subsp. scandens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Uncaria cordata-cordata replace: Uncaria cordata var. cordata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Uncaria lanosa-appendiculata replace: Uncaria lanosa var. appendiculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Vanroyena castanosperma replace: Van-royena castanosperma reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna Station-Creek replace: Vigna sp. Station Creek (R.J.Lawn CQ3284) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vitex trifolia-trifolia replace: Vitex trifolia var. trifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Wendlandia Thornton-Peak replace: Wendlandia sp. (Thornton Peak) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea McDowall-Range replace: Wilkiea sp. (McDowall Range J.G.Tracey 14552) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea MtLewis replace: Wilkiea sp. (Mt Lewis L.J.Webb+ 10501) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea Palmerston replace: Wilkiea sp. (Palmerston) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea Russell-Gorge replace: Wilkiea sp. (Russell Gorge S.J.Dansie 1909) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wrightia laevis-millgar replace: Wrightia laevis subsp. millgar reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia pubescens-penicillata replace: Wrightia pubescens subsp. penicillata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia pubescens-pubescens replace: Wrightia pubescens subsp. pubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xylosma MtLewis replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species -- find: Xylosma sp. Mt Lewis (G.Sankowsky 1108) - replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma Temple-Bay replace: Xylosma sp. (Temple Bay P.I.Forster PIF8980) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Xylosma sp. Mt Lewis (G.Sankowsky 1108) + replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Zieria Binjour replace: Zieria sp. (Binjour P.I.Forster PIF14134) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria Brolga-Park replace: Zieria sp. (Brolga Park A.R.Bean 1002) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: contributor: Do you have specific site data, including coordinates? The manuscript diff --git a/data/Kotowska_2020/metadata.yml b/data/Kotowska_2020/metadata.yml index dee68e111..a39f961c8 100644 --- a/data/Kotowska_2020/metadata.yml +++ b/data/Kotowska_2020/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(Species = stringr::str_replace(Species, "_"," ")) + custom_R_code: data %>% mutate(Species = stringr::str_replace(Species, "_"," ")) collection_date: 2017-04/2018-05 taxon_name: Species location_name: Plot @@ -2029,7 +2029,9 @@ traits: basis_of_value: measurement replicates: 1 method_context: branch sample - methods: For the branch samples one sun-exposed branch per tree optimally in mid-canopy position was chosen and cut using loppers mounted on an elongated pole. From this branch a healthy twig with diameter 5-7 mm was selected and a 3-4 cm segment removed + methods: For the branch samples one sun-exposed branch per tree optimally in mid-canopy + position was chosen and cut using loppers mounted on an elongated pole. From this + branch a healthy twig with diameter 5-7 mm was selected and a 3-4 cm segment removed for wood anatomy and for nutrient analysis. From this branch, 5-30 healthy and intact mature leaves (the youngest fully expanded leaves without any sign of damage) were taken and dust removed using wet tissue. Senescent leaves (usually visually @@ -2159,6 +2161,6 @@ taxonomic_updates: - find: Leptospermum poligalifolium replace: Leptospermum polygalifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Kubiak_2009/metadata.yml b/data/Kubiak_2009/metadata.yml index d9facf661..ed28ec9c1 100644 --- a/data/Kubiak_2009/metadata.yml +++ b/data/Kubiak_2009/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = case_when( @@ -2171,35 +2171,39 @@ taxonomic_updates: replace: Adiantum aethiopicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ambrosia artemesiifolia replace: Ambrosia artemisiifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex ?prostrata replace: Atriplex prostrata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Austrodathonia ?linkii + replace: Rytidosperma bipartitum + reason: Manual alignment with accepted APC name. (E. Wenk, 2023-06-22) + taxonomic_resolution: species - find: Avicennia marina var. australasica replace: Avicennia marina subsp. australasica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bauera ?microphylla replace: Bauera microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cayatia clematidea replace: Cayratia clematidea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloglottis sp. replace: Chiloglottis sp. [Kubiak_2009] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2208,105 +2212,105 @@ taxonomic_updates: - find: Cotoneaster ?franchetti replace: Cotoneaster franchetii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia X crocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus ?polystachyos replace: Cyperus polystachyos reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia fascicularis var. fascicularis replace: Darwinia fascicularis subsp. fascicularis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Desmodium ?gunnii replace: Desmodium gunnii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichondra repens (s.lat.) replace: Dichondra repens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium ?ciliatum replace: Epilobium ciliatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium billardierianum var. cinereum replace: Epilobium billardierianum subsp. cinereum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eragrostis ?brownii replace: Eragrostis brownii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fumaria ?officianalis replace: Fumaria officinalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphocarpus ?fruticosus replace: Gomphocarpus fruticosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grammitis ?stenophylla replace: Grammitis stenophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea dactyloides (s.str.) replace: Hakea dactyloides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia riparia (s.lat.) replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hovea linearis (s.lat.) replace: Hovea linearis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis hygrometrica (s.lat.) replace: Hypoxis hygrometrica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isolepis ?cernua replace: Isolepis cernua reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Laxmannia gracilis (s.str.) replace: Laxmannia gracilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lissanthe strigosa subsp. ?subulata replace: Lissanthe strigosa subsp. subulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lobularia maratima replace: Lobularia maritima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microtis unifolia (s.lat.) replace: Microtis unifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Narcissus sp. replace: Narcissus sp. [Kubiak_2009] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2316,80 +2320,80 @@ taxonomic_updates: replace: Oxalis corniculata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petunia ?(hybrid) replace: Petunia x hybrida reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phoenix ?canariensis replace: Phoenix canariensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea variabilis (syn. Myrsine variabilis) replace: Rapanea variabilis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rorippa nasturtium-aquaticum ?K replace: Rorippa nasturtium-aquaticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus ?discolor replace: Rubus discolor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix ?alba replace: Salix alba reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix babylonica (s.lat.) replace: Salix babylonica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schizaea bifida (s.lat.) replace: Schizaea bifida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sisyrinchium species A replace: Sisyrinchium sp. A reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taraxacum officianale replace: Taraxacum officinale reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themda australis replace: Themeda australis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procerum (s.str.) replace: Triglochin procera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typha ?orientalis replace: Typha orientalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena bonariensis (s.lat.) replace: Verbena bonariensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena litoralis (s.lat.) replace: Verbena litoralis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vitis sp. replace: Vitis sp. [Kubiak_2009] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2399,26 +2403,22 @@ taxonomic_updates: replace: Wahlenbergia communis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Watsonia meriana cv. Bulbillifera replace: Watsonia meriana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wisteria ?sinensis replace: Wisteria sinensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea ?minor replace: Xanthorrhoea minor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-22) - taxonomic_resolution: Species -- find: Austrodathonia ?linkii - replace: Rytidosperma bipartitum - reason: Manual alignment with accepted APC name. (E. Wenk, 2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: Additional traits for later input, fire_time_from_fire_to_peak_fruiting diff --git a/data/Kuo_1982/metadata.yml b/data/Kuo_1982/metadata.yml index bd1235ccf..74a153f90 100644 --- a/data/Kuo_1982/metadata.yml +++ b/data/Kuo_1982/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(measurement_remarks = ifelse(context == "cone","reproductive structure was a cone", NA),measurement_remarks = ifelse(context == "follicle","reproductive structure was a follicle", measurement_remarks), measurement_remarks = ifelse(context == "capsule","reproductive structure was a capsule", measurement_remarks)) + custom_R_code: data %>% mutate(measurement_remarks = ifelse(context == "cone","reproductive structure was a cone", NA),measurement_remarks = ifelse(context == "follicle","reproductive structure was a follicle", measurement_remarks), measurement_remarks = ifelse(context == "capsule","reproductive structure was a capsule", measurement_remarks)) collection_date: unknown/1982 taxon_name: species location_name: location @@ -410,7 +410,7 @@ taxonomic_updates: - find: Banksia hookerana replace: Banksia hookeriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: micronutrient concentrations for seeds diff --git a/data/Laliberte_2012/metadata.yml b/data/Laliberte_2012/metadata.yml index 22178906f..1691bf6b4 100644 --- a/data/Laliberte_2012/metadata.yml +++ b/data/Laliberte_2012/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( n_fixer = stringr::str_extract(strategy, "[Nn]itrogen fixer"), @@ -1643,7 +1643,7 @@ taxonomic_updates: - find: Conostylis crassinervia subsp. absens replace: Conostylis crassinerva subsp. absens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca aff. systena replace: Melaleuca sp. [Melaleuca aff. systena; Laliberte_2012] reason: match_09. Rewording taxon with term `affinis` preceding species epithet diff --git a/data/Lamont_2002/metadata.yml b/data/Lamont_2002/metadata.yml index 6e90f332a..cfe516300 100644 --- a/data/Lamont_2002/metadata.yml +++ b/data/Lamont_2002/metadata.yml @@ -38,7 +38,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(`Leaf type`), replace_duplicates_with_NA)) %>% @@ -283,84 +283,84 @@ taxonomic_updates: - find: Hakea cygna cygna replace: Hakea cygna subsp. cygna reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea cygna needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea francisiana coriacea replace: Hakea francisiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea francisiana francisiana replace: Hakea francisiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea obliqua parviflora replace: Hakea obliqua subsp. parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea orthorryncha filiformis replace: Hakea orthorrhyncha var. filiformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hakea orthorryncha orthorryncha replace: Hakea orthorrhyncha var. orthorrhyncha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hakea pandicarpa crassifolia replace: Hakea pandanicarpa subsp. crassifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea pandicarpa pandicarpa replace: Hakea pandanicarpa subsp. pandanicarpa reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea prostrata S replace: Hakea prostrata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea psilorryncha replace: Hakea psilorrhyncha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea recurva arida replace: Hakea recurva subsp. arida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea recurva recurva replace: Hakea recurva subsp. recurva reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea scoparia scoparia replace: Hakea scoparia subsp. scoparia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea scoparia trycherica replace: Hakea scoparia subsp. trycherica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea trifurcata (broad) replace: Hakea trifurcata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea trifurcata (needle) replace: Hakea trifurcata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Lawes_2012/metadata.yml b/data/Lawes_2012/metadata.yml index 4ca98b394..f83aef5a9 100644 --- a/data/Lawes_2012/metadata.yml +++ b/data/Lawes_2012/metadata.yml @@ -47,7 +47,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% + custom_R_code: data %>% mutate (`Dbh @ 0.5 m (mm)` = (`Dbh @ 0.5 m (mm)`/10)) %>% unite(col = `diameter1`, `Dbh @ 0.5 m (mm)`, `DBH @ 1.3 m (cm)`, remove = FALSE, sep = "") %>% mutate(remarks = paste0("diameter at breast height, ", diameter, " cm")) @@ -154,28 +154,28 @@ taxonomic_updates: - find: Acacia sp. replace: Acacia sp. [Lawes_2012] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Cupaniopsis anacordioides replace: Cupaniopsis anacardioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drypetes deplonchei replace: Drypetes deplanchei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Exocorpus latifolius replace: Exocarpos latifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus phillipensis replace: Mallotus philippensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pongamia pinncta replace: Pongamia pinnata reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sp1 Bombax replace: Bombax sp. [Sp1 Bombax; Lawes_2012] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -185,7 +185,7 @@ taxonomic_updates: replace: Syzygium eucalyptoides subsp. bleeseri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: - variable: taxon_name find: Sp 14 diff --git a/data/Lawson_2015/metadata.yml b/data/Lawson_2015/metadata.yml index 18d26c1ad..615b185f6 100644 --- a/data/Lawson_2015/metadata.yml +++ b/data/Lawson_2015/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(measurement_remarks = ifelse(Sample_type == "core (only hardwood)","wood density measured on hardwood sample", NA)) + custom_R_code: data %>% mutate(measurement_remarks = ifelse(Sample_type == "core (only hardwood)","wood density measured on hardwood sample", NA)) collection_date: 2012/2013 taxon_name: species location_name: site @@ -165,19 +165,19 @@ taxonomic_updates: - find: Cryptocarya glaucesens replace: Cryptocarya glaucescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ampifolia replace: Eucalyptus amplifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus vimnalis replace: Eucalyptus viminalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hymenathera dentata replace: Hymenanthera dentata var. angustifolia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Laxton_2005/metadata.yml b/data/Laxton_2005/metadata.yml index 3b399ae7d..6025350e2 100644 --- a/data/Laxton_2005/metadata.yml +++ b/data/Laxton_2005/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(SITE_ID = ifelse(is.na(SITE_ID),"unknown", SITE_ID)) ' diff --git a/data/Lee_2019/metadata.yml b/data/Lee_2019/metadata.yml index ad4c67f71..35ffb9e31 100644 --- a/data/Lee_2019/metadata.yml +++ b/data/Lee_2019/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( entity_type = ifelse(is.na(codeStem),"population", "individual"), diff --git a/data/Leigh_2003/metadata.yml b/data/Leigh_2003/metadata.yml index 35da30441..7fde5c727 100644 --- a/data/Leigh_2003/metadata.yml +++ b/data/Leigh_2003/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Lake Tyrrell", leaf_mass_to_stem_mass + custom_R_code: data %>% mutate(site_name = "Lake Tyrrell", leaf_mass_to_stem_mass = `tot lf (mg)`/`tot stm (mg)`) collection_date: 2000-10/2000-10 taxon_name: species diff --git a/data/Leigh_2006/metadata.yml b/data/Leigh_2006/metadata.yml index 72f7e8ece..e9a183b21 100644 --- a/data/Leigh_2006/metadata.yml +++ b/data/Leigh_2006/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_area = `Tot Lf area(mm)`/`No. lvs`, diff --git a/data/Leishman_1992/metadata.yml b/data/Leishman_1992/metadata.yml index 12d82727c..988ff68e9 100644 --- a/data/Leishman_1992/metadata.yml +++ b/data/Leishman_1992/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Louth", @@ -207,28 +207,28 @@ taxonomic_updates: - find: Capsella bursapastoris replace: Capsella bursa-pastoris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium auricomun replace: Chenopodium auricomum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium desertorum var.anidiophyllum replace: Chenopodium desertorum subsp. anidiophyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Exocarpus aphyllus replace: Exocarpos aphyllus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium calciveps replace: Gnaphalium calviceps reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium luteo-album replace: Gnaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homopholis (Panicum) proluta replace: Homopholis proluta reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) @@ -236,7 +236,7 @@ taxonomic_updates: - find: Leichardtia australis replace: Leichhardtia australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ophioglossum lusitanicum/polyphyllum replace: Ophioglossum sp. [Ophioglossum lusitanicum/polyphyllum; Leishman_1992] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -246,11 +246,11 @@ taxonomic_updates: replace: Solanum ferocissimum reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus mitchelli replace: Sporobolus mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia triloba/cuneata complex replace: Vittadinia sp. [Vittadinia triloba/cuneata complex; Leishman_1992] reason: match_04. Rewording taxon where `/` indicates uncertain species identification diff --git a/data/Leishman_1993/metadata.yml b/data/Leishman_1993/metadata.yml index 3931d54b3..b4f58d83d 100644 --- a/data/Leishman_1993/metadata.yml +++ b/data/Leishman_1993/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Sydney_area") + custom_R_code: data %>% mutate(site_name = "Sydney_area") collection_date: 1993/1993 taxon_name: species location_name: site_name @@ -111,80 +111,76 @@ traits: and an average mass for whole diaspores was obtained from weighing a group. substitutions: .na taxonomic_updates: -- find: Brachychiton sp. - replace: Brachychiton sp. [Leishman_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepidosperma sp. - replace: Lepidosperma sp. [Leishman_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Paspalidium sp. - replace: Paspalidium sp. [Leishman_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pomaderris sp. - replace: Pomaderris sp. [Leishman_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wahlenbergia sp. - replace: Wahlenbergia sp. [Leishman_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia cf irrorata replace: Acacia irrorata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Brachychiton sp. + replace: Brachychiton sp. [Leishman_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dianella cerulea replace: Dianella caerulea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guoia semiglauca replace: Guioa semiglauca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagenophera stipitata replace: Lagenophora stipitata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma flexulosum replace: Lepidosperma flexuosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lepidosperma sp. + replace: Lepidosperma sp. [Leishman_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Oplismenus aemula replace: Oplismenus aemulus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Paspalidium sp. + replace: Paspalidium sp. [Leishman_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Philotheca salsifolia replace: Philotheca salsolifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pomaderris sp. + replace: Pomaderris sp. [Leishman_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pratia purpurescens replace: Pratia purpurascens reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea elliptica replace: Pultenaea elliptica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea flexilis replace: Pultenaea flexilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea linophylla replace: Pultenaea linophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea stipularis replace: Pultenaea stipularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp.A replace: Schoenus sp. [Schoenus sp.A; Leishman_1993] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -193,10 +189,14 @@ taxonomic_updates: - find: Tetratheca shiresii replace: Tetratheca shiressii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Wahlenbergia sp. + replace: Wahlenbergia sp. [Leishman_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Wilkiea heugliana replace: Wilkiea hugeliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Leishman_1995/metadata.yml b/data/Leishman_1995/metadata.yml index 93508b1ec..331138f7c 100644 --- a/data/Leishman_1995/metadata.yml +++ b/data/Leishman_1995/metadata.yml @@ -42,7 +42,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(`Height (cm)_filtered`,`Seed mass (mg)_filtered`), ~na_if(.x, 0)), @@ -360,94 +360,86 @@ substitutions: find: vertebrate ingestion (fleshy) replace: endozoochory taxonomic_updates: +- find: Acacia cf irrorata + replace: Acacia irrorata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-12) + taxonomic_resolution: species - find: Acianthus sp. replace: Acianthus sp. [Leishman_1995] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Brachychiton sp. replace: Brachychiton sp. [Leishman_1995] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepidosperma sp. - replace: Lepidosperma sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orchidaceae sp. - replace: Orchidaceae sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Paspalidium sp. - replace: Paspalidium sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pomaderris sp. - replace: Pomaderris sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Prasophyllum sp. - replace: Prasophyllum sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pterostylis sp. - replace: Pterostylis sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thelymitra sp. - replace: Thelymitra sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wahlenbergia sp. - replace: Wahlenbergia sp. [Leishman_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acacia cf irrorata - replace: Acacia irrorata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: genus - find: Dianella cerulea replace: Dianella caerulea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dipodium cf punctatum replace: Dipodium punctatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma flexulosum replace: Lepidosperma flexuosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lepidosperma sp. + replace: Lepidosperma sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Oplismenus aemula replace: Oplismenus aemulus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Orchidaceae sp. + replace: Orchidaceae sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Paspalidium sp. + replace: Paspalidium sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Philotheca salsifolia replace: Philotheca salsolifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pomaderris sp. + replace: Pomaderris sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Prasophyllum sp. + replace: Prasophyllum sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pratia purpurescens replace: Pratia purpurascens reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis cf nutans replace: Pterostylis nutans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis cfdaintreana replace: Pterostylis daintreeana reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. + replace: Pterostylis sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ptilanthelium deusteum replace: Ptilanthelium deustum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp.A replace: Schoenus sp. [Schoenus sp.A; Leishman_1995] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -456,10 +448,18 @@ taxonomic_updates: - find: Tetratheca shiresii replace: Tetratheca shiressii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelymitra sp. + replace: Thelymitra sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Wahlenbergia sp. + replace: Wahlenbergia sp. [Leishman_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Wilkiea heugliana replace: Wilkiea hugeliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Leishman_2007/metadata.yml b/data/Leishman_2007/metadata.yml index fa893c456..3a167e7fc 100644 --- a/data/Leishman_2007/metadata.yml +++ b/data/Leishman_2007/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(`gs (molm-2s-1)`), ~na_if(.x, 0)), @@ -160,12 +160,12 @@ taxonomic_updates: - find: Acacia parramatensis replace: Acacia parramattensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina (?) diminuta replace: Allocasuarina diminuta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casuarina sp replace: Casuarina sp. [Leishman_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -179,7 +179,7 @@ taxonomic_updates: - find: Dianella caerula replace: Dianella caerulea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea spp replace: Dodonaea sp. [Leishman_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -188,23 +188,23 @@ taxonomic_updates: - find: Dubosia myoporoides replace: Duboisia myoporoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus seberi replace: Eucalyptus sieberi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euclayptus piperita replace: Eucalyptus piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion fernandi replace: Glochidion ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia aspersa replace: Hibbertia aspera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus spp replace: Juncus sp. [Leishman_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -213,7 +213,7 @@ taxonomic_updates: - find: Mirbelia platylaboides replace: Mirbelia platylobioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelea spp replace: Notelaea sp. [Leishman_2007] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -228,7 +228,7 @@ taxonomic_updates: replace: Pratia purpurascens reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Smilax sp replace: Smilax sp. [Leishman_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -238,7 +238,7 @@ taxonomic_updates: replace: Symphionema montanum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea sp replace: Xanthorrhoea sp. [Leishman_2007] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Lewis_2015/metadata.yml b/data/Lewis_2015/metadata.yml index 92d916118..f68700a33 100644 --- a/data/Lewis_2015/metadata.yml +++ b/data/Lewis_2015/metadata.yml @@ -38,7 +38,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site = "University of Western Sydney") %>% arrange(date_gas_exchange) %>% diff --git a/data/Lim_2017/metadata.yml b/data/Lim_2017/metadata.yml index 98794b9c7..4752440b7 100644 --- a/data/Lim_2017/metadata.yml +++ b/data/Lim_2017/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' heightdata <- data %>% mutate(counter = 1) %>% @@ -503,7 +503,7 @@ taxonomic_updates: - find: Pimelea axiflor replace: Pimelea axiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf bud size, proportion air space in leaf bud, hair density diff --git a/data/Lord_1997/metadata.yml b/data/Lord_1997/metadata.yml index 6d824cf15..ec0724a18 100644 --- a/data/Lord_1997/metadata.yml +++ b/data/Lord_1997/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(dispersers = NA) %>% move_values_to_new_trait( @@ -157,35 +157,35 @@ taxonomic_updates: - find: Crotalaria novaehollandiae replace: Crotalaria novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrolobium prostratum replace: Dendrolobium sp. [Dendrolobium prostratum; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Desmodium PineCreek + replace: Desmodium sp. 'Pine Ck' + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) + taxonomic_resolution: species - find: Desmodium clavitrichum replace: Desmodium sp. [Desmodium clavitrichum; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Desmodium PineCreek - replace: Desmodium sp. 'Pine Ck' - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species - find: Erythroxylem ellipticum replace: Erythroxylum ellipticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea goodiissppluri replace: Grevillea goodii subsp. pluricaulis reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Helicteres sp.Litchfield replace: Helicteres sp. Litchfield (D.M.J.S.Bowman 185) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia spJE243 replace: Hibbertia sp. [Hibbertia spJE243; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -199,19 +199,19 @@ taxonomic_updates: - find: Kairlasennia suffruticosa replace: Kailarsenia suffruticosa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mnesithia formosa replace: Mnesithea formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mnesithia rottboellioides replace: Mnesithea rottboellioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neptunia sp.Darwin replace: Neptunia sp. 'Darwin' reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp.1 replace: Polygala sp. [Polygala sp.1; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -227,11 +227,6 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Sauropus affin.glaucus - replace: Sauropus sp. [Sauropus affin.glaucus; Lord_1997] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-10) - taxonomic_resolution: genus - find: Sauropus Batchelor replace: Sauropus sp. [Sauropus Batchelor; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -242,10 +237,15 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Sauropus affin.glaucus + replace: Sauropus sp. [Sauropus affin.glaucus; Lord_1997] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-10) + taxonomic_resolution: genus - find: Sowerbaer alliacea replace: Sowerbaea alliacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium longleaf replace: Typhonium sp. [Typhonium longleaf; Lord_1997] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -256,19 +256,19 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Uraria lagopodoides - replace: Uraria lagopodioides - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species - find: Uraria Litchfield replace: Uraria sp. Litchfield (C.R.Dunlop 5220) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Uraria lagopodoides + replace: Uraria lagopodioides + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Vigna vex.var.ang replace: Vigna vexillata var. angustifolia reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Lunt_2012/metadata.yml b/data/Lunt_2012/metadata.yml index b3ecdd2e5..d72ee335b 100644 --- a/data/Lunt_2012/metadata.yml +++ b/data/Lunt_2012/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Victoria") + custom_R_code: data %>% mutate(site_name = "Victoria") collection_date: 1990/2012 taxon_name: Scientific Name location_name: site_name @@ -70,19 +70,11 @@ traits: methods: unknown; a very few duplicate values from related labs, but not filtered substitutions: .na taxonomic_updates: -- find: Dichelachne sp. - replace: Dichelachne sp. [Lunt_2012] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Poa sp. - replace: Poa sp. [Lunt_2012] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. aff. strictum replace: Arthropodium sp. [Arthropodium sp. aff. strictum; Lunt_2012] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -96,49 +88,57 @@ taxonomic_updates: - find: Calandriana granulifera replace: Calandrinia granulifera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis glandulosa F.Muell. replace: Calotis glandulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Celmisia constiniana replace: Celmisia costiniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dichelachne sp. + replace: Dichelachne sp. [Lunt_2012] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Epilobium billardiarim replace: Epilobium billardiereanum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagenifera gracillis replace: Lagenifera gracilis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptorynchos squamatus replace: Leptorhynchos squamatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea humillis replace: Pimelea humilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Poa sp. + replace: Poa sp. [Lunt_2012] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pognolepis muelleriana replace: Pogonolepis muelleriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pogonlepis muelleriana replace: Pogonolepis muelleriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quenetia urvillei replace: Quinetia urvillei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma nudiflora replace: Rytidosperma nudiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taraxacum sp. [Taraxacum sp. aff. brakelii] replace: Taraxacum sp. [Taraxacum sp. [Taraxacum sp. aff. brakelii]; Lunt_2012] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -152,10 +152,10 @@ taxonomic_updates: - find: Veronica plebia replace: Veronica plebeia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia subcervicularis replace: Vittadinia cervicularis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Lusk_2010/metadata.yml b/data/Lusk_2010/metadata.yml index 9c3099fd8..42b59f9ee 100644 --- a/data/Lusk_2010/metadata.yml +++ b/data/Lusk_2010/metadata.yml @@ -340,7 +340,7 @@ taxonomic_updates: - find: Duboisea myoporoides replace: Duboisia myoporoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: cell contents per area (g/m2), Cell wall mass per unit area (g/m2) diff --git a/data/Lusk_2012/metadata.yml b/data/Lusk_2012/metadata.yml index aae1939cf..d481da762 100644 --- a/data/Lusk_2012/metadata.yml +++ b/data/Lusk_2012/metadata.yml @@ -218,7 +218,7 @@ taxonomic_updates: - find: Palaquium galactoxlyon replace: Palaquium galactoxylon reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional traits: RGR also in data file and methods given above, but not currently diff --git a/data/Lusk_2014/metadata.yml b/data/Lusk_2014/metadata.yml index aa7507f32..17cd8efd8 100644 --- a/data/Lusk_2014/metadata.yml +++ b/data/Lusk_2014/metadata.yml @@ -195,11 +195,11 @@ taxonomic_updates: - find: Argyrodendron trifoliatum replace: Argyrodendron trifoliolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus phillipensis replace: Mallotus philippensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: photon flux density, seedling RGR, shade_tolerance diff --git a/data/MacinnisNg_2004/metadata.yml b/data/MacinnisNg_2004/metadata.yml index ab9bcfb4a..4e35ee03a 100644 --- a/data/MacinnisNg_2004/metadata.yml +++ b/data/MacinnisNg_2004/metadata.yml @@ -39,7 +39,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( stem_hydraulic_conductivity = `Hydraulic condictivity`/10 @@ -306,7 +306,7 @@ taxonomic_updates: - find: Eucalypyus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: contributor: I've been struggling with the units for the conductivity measures. diff --git a/data/MacinnisNg_2016/metadata.yml b/data/MacinnisNg_2016/metadata.yml index d9719277f..8f024aa01 100644 --- a/data/MacinnisNg_2016/metadata.yml +++ b/data/MacinnisNg_2016/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site = "Crookwell", diff --git a/data/Maslin_2012/metadata.yml b/data/Maslin_2012/metadata.yml index 1ad947505..a5135f3a9 100644 --- a/data/Maslin_2012/metadata.yml +++ b/data/Maslin_2012/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' traits_numeric <- data %>% filter(trait %in% c("leaf length maximum", "leaf length minimum", "leaf width maximum", @@ -296,22 +296,22 @@ taxonomic_updates: - find: Acacia aff. retinervis replace: Acacia affin retinervis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin ancistrophylla replace: Acacia affin. ancistrophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin baxteri replace: Acacia affin. baxteri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin jennerae replace: Acacia affin. jennerae reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin microbotrya replace: Acacia sp. [Acacia aff. microbotrya; Maslin_2012] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -321,32 +321,32 @@ taxonomic_updates: replace: Acacia affin. multispicata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin papyrocarpa replace: Acacia affin. papyrocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin quadrimarginea replace: Acacia affin. quadrimarginea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin resinosa replace: Acacia affin. resinosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin rigens replace: Acacia affin. rigens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia affin trachycarpa replace: Acacia affin. trachycarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia anceps x nematophylla replace: Acacia x [Acacia anceps x nematophylla; Maslin_2012] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -370,6 +370,6 @@ taxonomic_updates: - find: Acacia sp. Kununurra (G.Lullfitz 6195] replace: Acacia sp. Kununurra (G.Lullfitz 6195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/McCarthy_2017/metadata.yml b/data/McCarthy_2017/metadata.yml index 5f780bee5..cde09b43d 100644 --- a/data/McCarthy_2017/metadata.yml +++ b/data/McCarthy_2017/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c("Value"), ~na_if(.x, 0)), @@ -481,16 +481,16 @@ taxonomic_updates: - find: Citrus australia replace: Citrus australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. (Burrum Heads A.R.Bean 7802) replace: Leucopogon sp. Burrum Heads (A.R.Bean 7802) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Maryborough replace: Pultenaea sp. 'Maryborough' (T.D.Stanley 87) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Boehmeria platanifolia diff --git a/data/McGlone_2015/metadata.yml b/data/McGlone_2015/metadata.yml index eec64249e..503a2431a 100644 --- a/data/McGlone_2015/metadata.yml +++ b/data/McGlone_2015/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( woodiness = "woody", @@ -207,206 +207,206 @@ taxonomic_updates: - find: Acacia boormannii replace: Acacia boormanii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia caerulscens replace: Acacia caerulescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acrothamnus macraei replace: Acrothamnus maccraei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema quandong replace: Amyema quandang reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Androstoma milliganii replace: Androstoma verticillata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asterolasia trimalioides replace: Asterolasia trymalioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha sp 2 replace: Astrotricha sp. 2 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera bignoniaceae replace: Billardiera bignoniacea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea rosemarinifolia replace: Bossiaea rosmarinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clematis clitoroides replace: Clematis clitorioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa ameula replace: Correa aemula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cratistylis conocephala replace: Cratystylis conocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cratostylis conocephala replace: Cratystylis conocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera rosemarinifolia replace: Dampiera rosmarinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrophthoe vitelliana replace: Dendrophthoe vitellina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echylaena tomentosa replace: Enchylaena tomentosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon/Philotheca angustifolius replace: Philotheca angustifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon/Philotheca myoporoides replace: Philotheca myoporoides reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon/Philotheca pungens replace: Philotheca pungens reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon/Philotheca sp1 replace: Philotheca sp. [Eriostemon/Philotheca sp1; McGlone_2015] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eriostemon/Philotheca trachyphyllus replace: Philotheca trachyphylla reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus calcycogona replace: Eucalyptus calycogona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus chapmanniana replace: Eucalyptus chapmaniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus cinera replace: Eucalyptus cinerea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus consideriana replace: Eucalyptus consideniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus diversiformes replace: Eucalyptus ser. Diversiformae reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus fastigiata replace: Eucalyptus fastigata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gaultheria apressa replace: Gaultheria appressa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycirrhiza acanthocarpa replace: Glycyrrhiza acanthocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea rosemarinifolia replace: Grevillea rosmarinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea stieglitziana replace: Grevillea steiglitziana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia flabelliflormis replace: Halosarcia flabelliformis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia exutacies replace: Hibbertia exutiacies reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminium didymum replace: Jasminum didymum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kippistis suaedifolia replace: Kippistia suaedifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagarostrobos frankliniae replace: Lagarostrobos franklinii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania albidiflora replace: Logania albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiana exocarpei replace: Lysiana exocarpi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muelleriana celastroides replace: Muellerina celastroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muelleriana eucalyptoides replace: Muellerina eucalyptoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia astrotricha replace: Olearia asterotricha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia suufruticosa replace: Olearia suffruticosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus expansifolius replace: Ozothamnus x expansifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus phoditotus replace: Ozothamnus pholidotus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus pholitotus replace: Ozothamnus pholidotus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia chamaepuce replace: Persoonia chamaepeuce reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phaerosphaera hookeriana replace: Pherosphaera hookeriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea pagophylla replace: Pimelea pagophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum phylliraeiodes replace: Pittosporum phylliraeoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plectranthis parvifolius replace: Plectranthus parviflorus reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias aff. replace: Polyscias sp. [Polyscias aff.; McGlone_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -415,77 +415,77 @@ taxonomic_updates: - find: Pomaderris vaccinifolia replace: Pomaderris vacciniifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera aspathaloides replace: Prostanthera aspalathoides reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea largiflorerens replace: Pultenaea largiflorens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea luehmanii replace: Pultenaea luehmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea pariseae replace: Pultenaea parrisiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea vrolabndii replace: Pultenaea vrolandii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea williasoniana replace: Pultenaea williamsoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena dicantha replace: Sclerolaena diacantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena parenticuspis replace: Sclerolaena patenticuspis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena parvifolia replace: Sclerolaena parviflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemesioides replace: Senna artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium sp 1 replace: Spyridium sp. 1 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona pyrophylla replace: Swainsona pyrophila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trimalium daltonii replace: Trymalium daltonii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wittsteinia vaccinacea replace: Wittsteinia vacciniacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria aspathaloides replace: Zieria aspalathoides reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria sp 3 replace: Zieria sp. 3 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria sp.1 replace: Zieria sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Meers_2007/metadata.yml b/data/Meers_2007/metadata.yml index 54d4cc489..bcf5d3ed6 100644 --- a/data/Meers_2007/metadata.yml +++ b/data/Meers_2007/metadata.yml @@ -58,7 +58,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% subset(native_status != "introduced") + custom_R_code: data %>% subset(native_status != "introduced") collection_date: 2004/2004 taxon_name: Species location_name: site @@ -409,85 +409,85 @@ taxonomic_updates: - find: Acacia paravissima replace: Acacia pravissima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aceana novae-zelandiae replace: Acaena novae-zelandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aceana ovina replace: Acaena x ovina reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium milliflorum replace: Arthropodium milleflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chelianthes austrotenuifolia replace: Cheilanthes austrotenuifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbonotus pressianus replace: Cymbonotus preissianus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daucus glocidiatus replace: Daucus glochidiatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichelachne crinata replace: Dichelachne crinita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia junipera replace: Dillwynia juniperina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia phyliciodes replace: Dillwynia phylicoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomopholobium huegleii replace: Gompholobium huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea ericiodes spp. agg. replace: Kunzea ericoides reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lagenophora huegleii replace: Lagenophora huegelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicrus urcheolatus replace: Melichrus urceolatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microleana stipoides replace: Microlaena stipoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microseris scapigera spp. Agg replace: Microseris scapigera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxalis perrenans replace: Oxalis perennans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psuedognaphalium luteoalbum replace: Pseudognaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sologyne dominii replace: Solenogyne dominii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia muliticaulis replace: Wahlenbergia multicaulis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Mesaglio_2022/metadata.yml b/data/Mesaglio_2022/metadata.yml index 3d79efdf7..ac6e7a7e6 100644 --- a/data/Mesaglio_2022/metadata.yml +++ b/data/Mesaglio_2022/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location_name = "Duck River", @@ -131,6 +131,10 @@ traits: fewer and more inconsistent (timewise) surveys during this year compared to 2021. substitutions: .na taxonomic_updates: +- find: Freesia hybrid + replace: Freesia x + reason: Manual alignment to genus level taxon (E. Wenk, 2023-03-23) + taxonomic_resolution: genus - find: Hippeastrum hybrid replace: Hippeastrum x reason: Manual alignment to genus level taxon (E. Wenk, 2023-03-23) @@ -138,10 +142,6 @@ taxonomic_updates: - find: Taraxacum officinale F.H.Wigg. replace: Taraxacum officinale reason: Manual alignment to APC accepted taxon (E. Wenk, 2023-03-23) - taxonomic_resolution: Species -- find: Freesia hybrid - replace: Freesia x - reason: Manual alignment to genus level taxon (E. Wenk, 2023-03-23) - taxonomic_resolution: genus + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Metcalfe_2009/metadata.yml b/data/Metcalfe_2009/metadata.yml index acaa133f0..62e53f130 100644 --- a/data/Metcalfe_2009/metadata.yml +++ b/data/Metcalfe_2009/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( fruit_fleshiness = Fruit_type, @@ -527,7 +527,7 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank - trait_name: seedbank_longevity_class find: Short persistent soil (1 to 5 years) replace: short_persistent @@ -742,27 +742,27 @@ taxonomic_updates: - find: Casearia sp. (Mission Beach B.P.Hyland 773) replace: Casearia sp. Mission Beach (B.P.Hyland 773) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris sp. (Claudie River L.J.Webb + 8348) replace: Derris sp. Claudie River (L.J.Webb+ 8348) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris sp. (Daintree D.E.Boyland + 469) replace: Derris sp. Daintree (D.E.Boyland+ 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochtodes sp. (Hinchinbrook Island A.S.Thorsborne + 337) replace: Gynochthodes sp. (Hinchinbrook Island A.S.Thorsborne+ 337) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus solmslaubachii replace: Pandanus solms-laubachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: currently excluding "spore" as a "fruit_type" diff --git a/data/Metcalfe_2020_1/metadata.yml b/data/Metcalfe_2020_1/metadata.yml index da5d25360..486986ded 100644 --- a/data/Metcalfe_2020_1/metadata.yml +++ b/data/Metcalfe_2020_1/metadata.yml @@ -15,7 +15,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( fruit_fleshiness = Fruit_type, @@ -366,52 +366,52 @@ taxonomic_updates: - find: Bulbostylis sp. (White Mountains R.J.Cumming+ 19025) replace: Bulbostylis sp. White Mountains (R.J.Cumming+ 19025) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bowmannii replace: Cyperus bowmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus castaneus - C. cuspidatus replace: Cyperus sp. [Cyperus castaneus - C. cuspidatus; Metcalfe_2020_1] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Cyperus sp. (Coleman River J.R.Clarkson 3455) replace: Cyperus sp. Coleman River (J.R.Clarkson 3455) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp. (Eungella NP P.R.Sharpe+ 5052) replace: Cyperus sp. Eungella NP (P.R.Sharpe+ 5052) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp. (Katherine Gorge NP C.Dunlop 4505) replace: Cyperus sp. Katherine Gorge NP (C.Dunlop 4505) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp. (Mission Beach N.Byrnes MB14) replace: Cyperus sp. Mission Beach (N.Byrnes MB14) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. (Esmeralda Gorge S.T.Blake 19640) replace: Fimbristylis sp. Esmeralda Gorge (S.T.Blake 19640) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. (Iron Range H.Flecker NQNC8728) replace: Fimbristylis sp. Iron Range (H.Flecker NQNC8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. (Laura N.Byrnes 3315) replace: Fimbristylis sp. Laura (N.Byrnes 3315) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. (Poison Creek S.T.Blake 8561) replace: Fimbristylis sp. Poison Creek (S.T.Blake 8561) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. (Laura N.Byrnes 3285) replace: Scleria sp. Laura (N.Byrnes 3285) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Metcalfe_2020_2/metadata.yml b/data/Metcalfe_2020_2/metadata.yml index 946c81888..ce4c585aa 100644 --- a/data/Metcalfe_2020_2/metadata.yml +++ b/data/Metcalfe_2020_2/metadata.yml @@ -15,7 +15,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(fruit_fleshiness = Fruit_type, fruit_dehiscence = Fruit_type) + custom_R_code: data %>% mutate(fruit_fleshiness = Fruit_type, fruit_dehiscence = Fruit_type) collection_date: 2020/2020 taxon_name: current full name without authority description: data on Poaceae transcribed from a variety of sources @@ -368,7 +368,7 @@ taxonomic_updates: - find: Calyptochloa sp. (Charters Towers E.J.Thompson+ CHA554) replace: Calyptochloa sp. Charters Towers (E.J.Thompson+ CHA554) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbopogon ambiguus x C. queenslandicus replace: Cymbopogon x [Cymbopogon ambiguus x C. queenslandicus; Metcalfe_2020_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -387,43 +387,43 @@ taxonomic_updates: - find: Dichelachne sp. (Brisbane B.K.Simon 3221) replace: Dichelachne sp. Brisbane (B.K.Simon 3221) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria eriantha cv. Pangola replace: Digitaria eriantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria milanjiana cv. Jarra replace: Digitaria milanjiana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dimeria sp. (Mosquito Point J.R.Clarkson+ 9994) replace: Dimeria sp. Mosquito Point (J.R.Clarkson+ 9994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne armitii replace: Eriachne armittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne mucronata forma (Alpha C.E.Hubbard 7882) replace: Eriachne mucronata f. Alpha (C.E.Hubbard 7882) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Eriachne mucronata forma (Burnham R.W.Purdie 1370) replace: Eriachne mucronata f. Burnham (R.W.Purdie 1370) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Eriachne sp. (Dugald River B.K.Simon+ 3007) replace: Eriachne sp. Dugald River (B.K.Simon+ 3007) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gen.(Aq577997) sp. (Port Douglas R.L.Jago 6610) replace: Pseudoraphis sp. (Port Douglas R.L.Jago 6610) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema calvum x I. vaginiflorum replace: Iseilema x [Iseilema calvum x I. vaginiflorum; Metcalfe_2020_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -443,7 +443,7 @@ taxonomic_updates: replace: Megathyrsus maximus var. maximus reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Perotis clarksonii x P. rara replace: Perotis x [Perotis clarksonii x P. rara; Metcalfe_2020_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -452,16 +452,16 @@ taxonomic_updates: - find: Sarga angustum replace: Sarga angusta reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Steinchisma laxa replace: Steinchisma laxum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thaumastochloa sp. (Morehead River J.R.Clarkson+ 8086) replace: Thaumastochloa sp. Morehead River (J.R.Clarkson+ 8086) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -exclude_observations: + taxonomic_resolution: species +exclude_observations: - variable: taxon_name find: Echinochloa polystachya cv. Amity, Hymenachne amplexicaulis cv. Olive reason: excluding cultivars diff --git a/data/Milberg_1998/metadata.yml b/data/Milberg_1998/metadata.yml index b157d5f53..20861a2dd 100644 --- a/data/Milberg_1998/metadata.yml +++ b/data/Milberg_1998/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site = "south-western Australia") + custom_R_code: data %>% mutate(site = "south-western Australia") collection_date: unknown/1998 taxon_name: species location_name: site @@ -99,11 +99,11 @@ taxonomic_updates: replace: Eucalyptus x brachyphylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetragona replace: Eucalyptus pleurocarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: seedling nutrient content, from a nutrient gradient germination diff --git a/data/Mitchell_2008/metadata.yml b/data/Mitchell_2008/metadata.yml index f26d70ec7..e5ca5d014 100644 --- a/data/Mitchell_2008/metadata.yml +++ b/data/Mitchell_2008/metadata.yml @@ -36,7 +36,7 @@ contributors: dataset_curators: Gillian Kowalick, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( huber_value = exp(`ln HV`) @@ -521,10 +521,10 @@ taxonomic_updates: - find: Casuarina humilis replace: Allocasuarina humilis reason: Align with currently accepted name (E. Wenk 2023-05-05) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: Align with currently accepted name (E. Wenk 2023-05-05) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Mokany_2008/metadata.yml b/data/Mokany_2008/metadata.yml index 5548f4411..0b333aaca 100644 --- a/data/Mokany_2008/metadata.yml +++ b/data/Mokany_2008/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(`Root:Shoot ratio`), ~na_if(.x, 0)), @@ -492,19 +492,19 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bromus horeaceus replace: Bromus hordeaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Davesia mimosoides replace: Daviesia mimosoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera pelata replace: Drosera peltata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton spp replace: Euchiton sp. [Mokany_2008] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -513,38 +513,38 @@ taxonomic_updates: - find: Hibbertia obtusiflora replace: Hibbertia obtusifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypericum graminium replace: Hypericum gramineum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Liniaria pelisserana replace: Linaria pelisseriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luzula merionalis replace: Luzula meridionalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Moenchia erectus replace: Moenchia erecta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Panicum effusium replace: Panicum effusum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne elator replace: Tricoryne elatior reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbia dioica replace: Wurmbea dioica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Mokany_2015/metadata.yml b/data/Mokany_2015/metadata.yml index 2070de949..a450216f5 100644 --- a/data/Mokany_2015/metadata.yml +++ b/data/Mokany_2015/metadata.yml @@ -42,7 +42,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(plant_height_unique_values), ~na_if(.x, 0)), @@ -145,15 +145,15 @@ traits: because Jordan recorded seed width and length, not actual seed mass. substitutions: .na taxonomic_updates: +- find: Acaena Xanserovina + replace: Acaena x anserovina + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species -- find: Acaena Xanserovina - replace: Acaena x anserovina - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis aff parviflora replace: Agrostis sp. [Agrostis aff. parviflora; Mokany_2015] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -162,37 +162,37 @@ taxonomic_updates: - find: Athrotaxis laxifolia replace: Arthrotaxis laxifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex diandra replace: Carex aff. diandra reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia Xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lachnagrostis scabra subsp scabra replace: Lachnagrostis scabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus expansifolius replace: Ozothamnus x expansifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis Xingens replace: Pterostylis x ingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Richea curtisiae replace: Richea x curtisiae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola sieberana replace: Viola sieberiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Moles_2000/metadata.yml b/data/Moles_2000/metadata.yml index 72b4068df..ffe445d66 100644 --- a/data/Moles_2000/metadata.yml +++ b/data/Moles_2000/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = case_when( @@ -128,42 +128,42 @@ taxonomic_updates: - find: Acacia terminallis replace: Acacia terminalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonea triquetra replace: Dodonaea triquetra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris tubiflora replace: Styphelia tubiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gre6illea buxifolia replace: Grevillea buxifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gre6illea sericea replace: Grevillea sericea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gre6illea speciosa replace: Grevillea speciosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea daphnoides replace: Pultenaea daphnoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea elliptica replace: Pultenaea elliptica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea flexillis replace: Pultenaea flexilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria lae6igata replace: Zieria laevigata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Moles_2003/metadata.yml b/data/Moles_2003/metadata.yml index 483b78c03..d20d75166 100644 --- a/data/Moles_2003/metadata.yml +++ b/data/Moles_2003/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Sturt National Park") + custom_R_code: data %>% mutate(site_name = "Sturt National Park") collection_date: 2000/2000 taxon_name: Species location_name: site_name @@ -139,23 +139,23 @@ taxonomic_updates: - find: Harmsiodoxa brevipes var. brevioes replace: Harmsiodoxa brevipes var. brevipes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus polystachus replace: Ptilotus polystachyus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena bicornis var. horrido replace: Sclerolaena bicornis var. horrida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senna artemisioides nothossp. coriacea replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Triraphus mollis replace: Triraphis mollis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Moles_2011/metadata.yml b/data/Moles_2011/metadata.yml index e1d42400e..02b05f12b 100644 --- a/data/Moles_2011/metadata.yml +++ b/data/Moles_2011/metadata.yml @@ -34,7 +34,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = case_when( @@ -288,36 +288,36 @@ taxonomic_updates: - find: Darwinia fasciculata replace: Darwinia fascicularis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Doryphora sassafrass replace: Doryphora sassafras reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gammophylla replace: Eucalyptus gamophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus oblongifolia replace: Eucalyptus longifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus radiata radiata replace: Eucalyptus radiata subsp. radiata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Heritiera trifoliatum replace: Heritiera trifoliolata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nothofagus cuninghamii replace: Nothofagus cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paraneurachne mueleri replace: Paraneurachne muelleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyalthia sp replace: Polyalthia sp. [Moles_2011] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -326,10 +326,10 @@ taxonomic_updates: - find: Pultenea daphnoides replace: Pultenaea daphnoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum aeremeum replace: Zygophyllum eremaeum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Moore_2019/metadata.yml b/data/Moore_2019/metadata.yml index ab5b1a47e..87f127fbd 100644 --- a/data/Moore_2019/metadata.yml +++ b/data/Moore_2019/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(c(`leaf_area (mm2)`,`specific_leaf_area (mm2/mg)`), ~na_if(.x, 0)), @@ -896,11 +896,11 @@ taxonomic_updates: - find: Eucalyptus fibrosa nubilla replace: Eucalyptus fibrosa subsp. nubilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus whiteii replace: Eucalyptus whitei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf perimeter diff --git a/data/Moore_2019_2/metadata.yml b/data/Moore_2019_2/metadata.yml index 07c4dc24b..7db8cf919 100644 --- a/data/Moore_2019_2/metadata.yml +++ b/data/Moore_2019_2/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "La Trobe University (Bundoora) Glasshouse", @@ -230,8 +230,8 @@ traits: value_type: raw basis_of_value: expert_score replicates: .na - methods: Assigned the value 'resprouts' if the trait 'resprouting_capacity_proportion_individuals' is - non-zero; else 'fire_killed' + methods: Assigned the value 'resprouts' if the trait 'resprouting_capacity_proportion_individuals' + is non-zero; else 'fire_killed' substitutions: - trait_name: bud_bank_location find: crown @@ -255,23 +255,23 @@ taxonomic_updates: - find: Anthosacne scabra replace: Anthosachne scabra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa scabra spp falcata replace: Austrostipa scabra subsp. falcata reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dichelachne siebriana replace: Dichelachne sieberiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma carphoidesum replace: Rytidosperma carphoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Morgan_2005/metadata.yml b/data/Morgan_2005/metadata.yml index 5e1ea0a4d..f3a7c397a 100644 --- a/data/Morgan_2005/metadata.yml +++ b/data/Morgan_2005/metadata.yml @@ -142,36 +142,36 @@ taxonomic_updates: - find: Dodonea triquetra replace: Dodonaea triquetra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonea viscosa replace: Dodonaea viscosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonea viscosa subsp. angustissima replace: Dodonaea viscosa subsp. angustissima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonea viscosa subsp. cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonea viscosa subsp. spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila desertorum replace: Eremophila deserti reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion ferdidi replace: Glochidion ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisiodes replace: Senna artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: additional root measurements, including ratio of steep to shallow diff --git a/data/Morgan_2011_1/metadata.yml b/data/Morgan_2011_1/metadata.yml index a5e1a4015..e08ee2b71 100644 --- a/data/Morgan_2011_1/metadata.yml +++ b/data/Morgan_2011_1/metadata.yml @@ -15,7 +15,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Victoria", @@ -141,22 +141,22 @@ taxonomic_updates: replace: Acacia acinacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia longifolia s.l. replace: Acacia longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium milleflorum s.s. replace: Arthropodium milleflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium strictum s.l. replace: Arthropodium strictum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa spp. replace: Austrostipa sp. [Morgan_2011_1] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -166,7 +166,7 @@ taxonomic_updates: replace: Caladenia carnea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia spp. replace: Caladenia sp. [Morgan_2011_1] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -176,17 +176,17 @@ taxonomic_updates: replace: Chrysocephalum apiculatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus erubescens spp. agg. replace: Convolvulus erubescens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crassula sieberiana s.l. replace: Crassula sieberiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynoglossum spp. replace: Cynoglossum sp. [Morgan_2011_1] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -196,107 +196,107 @@ taxonomic_updates: replace: Dianella revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichelachne sciurea spp. agg. replace: Dichelachne sciurea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia cinerascens s.l. replace: Dillwynia cinerascens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris lanceolata s.l. replace: Diuris lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton collinus s.l. replace: Euchiton collinus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gamochaeta purpurea s.l. replace: Gamochaeta purpurea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium retrorsum s.l. replace: Geranium retrorsum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium solanderi s.l. replace: Geranium solanderi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sericea var. sericea s.s. replace: Hibbertia sericea var. sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lachnagrostis aemula s.s. replace: Lachnagrostis aemula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia pedunculata s.l. replace: Lobelia pedunculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra micrantha s.s. replace: Lomandra micrantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus dentatus s.l. replace: Melicytus dentatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microseris scapigera spp. agg. replace: Microseris scapigera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxalis corniculata s.l. replace: Oxalis corniculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parietaria debilis s.l. replace: Parietaria debilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora s.s. replace: Pimelea curviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poranthera microphylla s.s. replace: Poranthera microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Potamogeton tricarinatus s.l. replace: Potamogeton tricarinatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus fruticosus spp. agg. replace: Rubus fruticosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio squarrosus s.s. replace: Senecio squarrosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solenogyne spp. replace: Solenogyne sp. [Morgan_2011_1] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -306,17 +306,17 @@ taxonomic_updates: replace: Stackhousia monogyna reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium graminifolium s.l. replace: Stylidium graminifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra pauciflora s.l. replace: Thelymitra pauciflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra spp. replace: Thelymitra sp. [Morgan_2011_1] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -326,36 +326,36 @@ taxonomic_updates: replace: Tribolium acutiflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procera s.l. replace: Triglochin procera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola hederacea sensu Willis (1972) replace: Viola hederacea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola sieberiana spp. agg. replace: Viola sieberiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia communis s.l. replace: Wahlenbergia communis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia gracilenta s.l. replace: Wahlenbergia gracilenta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia graniticola s.l. replace: Wahlenbergia graniticola reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Morgan_2011_2/metadata.yml b/data/Morgan_2011_2/metadata.yml index 93cb1acbc..be79bd604 100644 --- a/data/Morgan_2011_2/metadata.yml +++ b/data/Morgan_2011_2/metadata.yml @@ -15,7 +15,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Victoria") + custom_R_code: data %>% mutate(site_name = "Victoria") collection_date: 2011/2011 taxon_name: Scientific Name location_name: site_name @@ -65,6 +65,6 @@ taxonomic_updates: replace: Thelymitra aff. pauciflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Morgan_2014/metadata.yml b/data/Morgan_2014/metadata.yml index f24cfc6f5..960bf8c85 100644 --- a/data/Morgan_2014/metadata.yml +++ b/data/Morgan_2014/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Mt Nelse-Bogong High Plains-Mt Hotham", @@ -109,63 +109,63 @@ taxonomic_updates: - find: Acaena sp. replace: Acaena sp. [Morgan_2014] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Craspedia sp. - replace: Craspedia sp. [Morgan_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Astelia alpina var. novae hollandiae replace: Astelia alpina var. novae-hollandiae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachysome spatulatha subsp. Spathulata replace: Brachyscome spathulata subsp. spathulata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachysome spatulatha subsp. spathulata replace: Brachyscome spathulata subsp. spathulata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachysome stolonifera replace: Brachyscome stolonifera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chinogentias muelleriana replace: Chionogentias muelleriana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Colobanthus pulvnatus replace: Colobanthus pulvinatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Craspedia sp. + replace: Craspedia sp. [Morgan_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Erigeron bellidiodes replace: Erigeron bellidioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron bellidoides replace: Erigeron bellidioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia collina subs.glacialis replace: Euphrasia collina subsp. glacialis reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Euphrasia collina var. diversicolor replace: Euphrasia collina subsp. diversicolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leptorynchus squamatus replace: Leptorhynchos squamatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lycopogon fastigatum replace: Lycopodium fastigiatum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melictys sp. replace: Melicytus sp. [Morgan_2014] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -175,18 +175,18 @@ taxonomic_updates: replace: Pratia surrepens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ranunculus anenonemous replace: Ranunculus anemoneus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio pinnatifolius var. pleicephalus replace: Senecio pinnatifolius var. pleiocephalus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stackhousia pulvinarus replace: Stackhousia pulvinaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Morgan_2021/metadata.yml b/data/Morgan_2021/metadata.yml index 21b663dd3..2825829dc 100644 --- a/data/Morgan_2021/metadata.yml +++ b/data/Morgan_2021/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( taxon_name = stringr::str_c(genus, " ", species), diff --git a/data/Munroe_2019/metadata.yml b/data/Munroe_2019/metadata.yml index 4f81ccc6b..061d4f528 100644 --- a/data/Munroe_2019/metadata.yml +++ b/data/Munroe_2019/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( remarks = ifelse(`Photosynthetic.pathway (confirmed using data from literature or TERN stable isotope analysis)` @@ -711,67 +711,67 @@ taxonomic_updates: - find: Brachyscome tadgelii replace: Brachyscome tadgellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus accendens replace: Eucalyptus accedens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus camaldulenis replace: Eucalyptus camaldulensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma yonsii replace: Lepidosperma lyonsii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana lanifolia replace: Maireana planifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus obovatus replace: Micromyrtus obovata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murchisonia volubilis brittan replace: Murchisonia volubilis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paractaenum novae hollandiae replace: Paractaenum novae-hollandiae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus collinus replace: Phyllanthus calycinus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala pterocarya replace: Polygala pterocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvia verbenacea replace: Salvia verbenaca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola parviflora replace: Scaevola parvifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taraxacum sect taraxacum replace: Taraxacum sp. [Taraxacum sect taraxacum; Munroe_2019] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Tephrosia procera cowie replace: Tephrosia procera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Campylopus introflexus, Dicranoloma menziesii, Philonotis tenuis, Polytrichastrum diff --git a/data/NHNSW_2014/metadata.yml b/data/NHNSW_2014/metadata.yml index ef6bc003a..e070e2ade 100644 --- a/data/NHNSW_2014/metadata.yml +++ b/data/NHNSW_2014/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `flowering time` = ifelse(species_name == "Enneapogon cylindricus","mar-aug",`flowering time`), @@ -82,7 +82,7 @@ taxonomic_updates: - find: Aristida sp. replace: Aristida sp. [NHNSW_2014] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Aristida sp. 2 replace: Aristida sp. [Aristida sp. 2; NHNSW_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -91,27 +91,27 @@ taxonomic_updates: - find: Arthraxon castratu replace: Arthraxon castratus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa juncifolia subsp. Southern replace: Austrostipa juncifolia subsp. Southern River (B.J.Keighery 2160) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calyptochloa cylindropserma replace: Calyptochloa cylindrosperma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris macivorii replace: x Cynochloris macivorii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma popinensis replace: Rytidosperma popinense reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/NHNSW_2014_2/metadata.yml b/data/NHNSW_2014_2/metadata.yml index b565346d3..24af61cdd 100644 --- a/data/NHNSW_2014_2/metadata.yml +++ b/data/NHNSW_2014_2/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' check_months <- function(x){(1:12 %in% x %>% as.integer() %>% paste(collapse=""))}; fruiting <- @@ -879,250 +879,250 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena sp. A sensu Harden (1990) replace: Acaena sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acianthus sp. A sensu Harden (1993) replace: Acianthus sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agropogon lutosus replace: x Agropogon lutosus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis sp. B sensu Jacobs & Hastings (1993) replace: Agrostis sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon coriaceous replace: Alectryon coriaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera sp. A sensu Harden (1990) replace: Alternanthera sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arabidella sp. A sensu Harden (1990) replace: Arabidella sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. A sensu Harden (1993) replace: Arthropodium sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. B sensu Harden (1993) replace: Arthropodium sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha sp. B sensu Harden (1992) replace: Astrotricha sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex sp. B sensu Jacobs (1990) replace: Atriplex sp. B reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bertya sp. D sensu Harden (1990) replace: Bertya sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea neo-anglica replace: Bossiaea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome sp.1 sensu PS Short 1999 replace: Brachyscome sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica x juncea replace: Brassica x juncea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. A sensu Harden (1993) replace: Caladenia sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. B sensu Harden (1993) replace: Caladenia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. C sensu Harden (1993) replace: Caladenia sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calamagrostis benthamiana replace: Eragrostis benthamii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. A sensu Harden (1990) replace: Calandrinia sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Nerriga (I.R.H.Telford 8677) NSW Herbarium replace: Calandrinia sp. Nerriga (I.R.H.Telford 8677) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia adunca replace: Cassinia x adunca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia sp. B sensu Everett (1992) replace: Cassinia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia sp. C sensu Everett (1992) replace: Cassinia sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia sp. D sensu Everett (1992) replace: Cassinia sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cenchrus species A replace: Cenchrus sp. A reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centaurea sp. A sensu Murray (1992) replace: Centaurea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centaurea sp. B sensu Murray (1992) replace: Centaurea sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaesyce sp. A sensu James & Harden (1990) replace: Chamaesyce sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaesyce sp. B sensu James & Harden (1990) replace: Chamaesyce sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Choretrum sp. A sensu Harden (1992) replace: Choretrum sp. A (aff. candollei) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coix lachryma-jobi replace: Coix lacryma-jobi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas sp. A sensu Harden (1993) replace: Corybas sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia maxgrayii replace: Craspedia maxgrayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crepidomanes minutum replace: Trichomanes minutum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra sp. A sensu Harden (1990) replace: Cryptandra sp. A reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyclosorus pennigera replace: Cyclosorus penniger reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbonotus sp. A sensu Murray (1992) replace: Cymbonotus sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus species A replace: Cyperus sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Daphnandra sp. 'Illawarra' (Schodde 3475) + replace: Daphnandra sp. Illawarra (R.Schodde 3475) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Daphnandra sp. A sensu Harden (1990) replace: Daphnandra sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra sp. D sensu Harden (1990) replace: Daphnandra sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Daphnandra sp. 'Illawarra' (Schodde 3475) - replace: Daphnandra sp. Illawarra (R.Schodde 3475) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichondra sp. A sensu Harden (1992) replace: Dichondra sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichopogon sp. A sensu Harden (1993) replace: Dichopogon sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia rupestris) replace: Dillwynia rupestris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris nebulosa replace: Diuris x nebulosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron primulifolium replace: Erigeron primulifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochlamys sp. A sensu Brown (1992) replace: Eriochlamys sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus conjuncta replace: Eucalyptus x conjuncta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Frankenia sp. A sensu Harden (1990) replace: Frankenia sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gaura mollis replace: Oenothera sp. [Gaura mollis; NHNSW_2014_2] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -1132,92 +1132,92 @@ taxonomic_updates: replace: Gnaphalium sp. E (aff. argentifolium) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia pterygospermum replace: Halosarcia pterygosperma reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium sp. A sensu Harden (1992) replace: Heliotropium sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. B sensu Harden (1990) replace: Hibbertia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus firmis replace: Juncus firmus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus ochrolepis replace: Juncus ochrocoleus reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. 'Braidwood' (Powell 371) replace: Kunzea sp. Braidwood (Powell 371) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. 'Middle Brother Mtn' (Wilson 505) replace: Kunzea sp. Middle Brother Mtn (Wilson 505) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. 'Mt Cookem' (Benson 4470) replace: Kunzea sp. Mt Cookem (Benson 4470) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. 'Mt Kaputar' (Jackson 2246) replace: Kunzea sp. Mt Kaputar (Jackson 2246) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. 'Wadbilliga' (Rodd 6168) replace: Kunzea sp. Wadbilliga (Rodd 6168) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leionema sp. 'Hungryway Creek' (Lemberg, NSW69237) replace: Leionema sp. Hungryway Creek (Lemberg NSW 69237) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium sp. B sensu Harden (1990) replace: Lepidium sp. B reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepyrodia sp. A sensu Harden (1993) replace: Lepyrodia sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon neo-anglicus replace: Leucopogon neoanglicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon species B replace: Leucopogon sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lissanthe sp. A sensu Powell (1992) replace: Lissanthe sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lissanthe sp. B sensu Powell (1992) replace: Lissanthe sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania sp. A sensu Harden (1992) replace: Logania sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macarthuria neo-cambrica replace: Macarthuria neocambrica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malus x domestica replace: Malus x [Malus x domestica; NHNSW_2014_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1232,7 +1232,7 @@ taxonomic_updates: replace: Melichrus hirsutus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha x spicata replace: Mentha x [Mentha x spicata; NHNSW_2014_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1241,168 +1241,168 @@ taxonomic_updates: - find: Muehlenbeckia costata replace: Muehlenbeckia costata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myosotis caespitosa replace: Myosotis cespitosa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea sp. A sensu Harden (1992) replace: Notelaea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ornithogalum longebracteatum replace: Ornithogalum longibracteatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osteocarpum scleropterum replace: Osteocarpum x scleropterum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium x asperum replace: Pelargonium x asperum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium asperum replace: Pelargonium x asperum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia nigrescens replace: Persoonia sp. [Persoonia nigrescens; NHNSW_2014_2] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Piptatherum miliacea replace: Piptatherum miliaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum pauciflorum replace: Citriobatus pauciflorus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. A sensu Powell & Hastings (1992) replace: Platysace sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. A sensu Harden (1993) replace: Prasophyllum sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pratia sp. A sensu Harden (1992) replace: Pratia sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. A sensu Conn (1992) replace: Prostanthera sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. B sensu Conn (1992) replace: Prostanthera sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. C sensu Conn (1992) replace: Prostanthera sp. C Flora of New South Wales (R.Medd & C.Bower s.n., NSW 774769) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. E sensu Conn (1992) replace: Prostanthera sp. E reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudognaphalium luteo-album replace: Pseudognaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. 'Botany Bay; (Bishop J2211-13) + replace: Pterostylis sp. Botany Bay (A.Bishop J221/1-13) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Pterostylis sp. B sensu Harden (1993) replace: Pterostylis sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Pterostylis sp. 'Botany Bay; (Bishop J2211-13) - replace: Pterostylis sp. Botany Bay (A.Bishop J221/1-13) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. C sensu Harden (1993) replace: Pterostylis sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. D sensu Harden (1993) replace: Pterostylis sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. E sensu Harden (1993) replace: Pterostylis sp. E reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. F sensu Harden (1993) replace: Pterostylis sp. F reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea hartmanii replace: Pultenaea hartmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Pultenaea sp. F sensu Weston (1991) - replace: Pultenaea sp. F - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Pultenaea sp. I sensu Weston (1991) - replace: Pultenaea sp. I - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Pultenaea sp. K sensu Weston (1991) - replace: Pultenaea sp. K - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. 'Liverpool Range' (Johnson 963) replace: Pultenaea sp. Liverpool Range (Johnson 963) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. 'New England' (Coveny 16631) replace: Pultenaea sp. New England (Coveny 16631) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. 'Olinda' (Coveny 6616) replace: Pultenaea sp. Olinda (R.Coveny 6616) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. 'robusta' (Anderberg 7048) replace: Pultenaea sp. robusta (Anderberg 7048) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pultenaea sp. F sensu Weston (1991) + replace: Pultenaea sp. F + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species +- find: Pultenaea sp. I sensu Weston (1991) + replace: Pultenaea sp. I + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species +- find: Pultenaea sp. K sensu Weston (1991) + replace: Pultenaea sp. K + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Quassia sp. 'Mt. Nardi' (Floyd 1198) replace: Quassia sp. Mt Nardi (Floyd 1198) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. 'Richmond River' (Maiden s.n., Nov 1903) replace: Rapanea sp. Richmond River (Maiden s.n. Nov 1903) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix fragilis replace: Salix x fragilis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix sp._hybrid replace: Salix sp. [Salix sp._hybrid; NHNSW_2014_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1417,59 +1417,59 @@ taxonomic_updates: replace: Selago thunbergii Choisy reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio sp. C sensu Harden (1992) replace: Senecio sp. C f. 4 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Senecio sp. E sensu Harden (1992) replace: Senecio sp. E reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio sp. N sensu Harden (1992) replace: Senecio sp. N reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida abutilifolia replace: Sida abutilon reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. A sensu Harden (1990) replace: Sida sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. B sensu Harden (1990) replace: Sida sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C sensu Harden (1990) replace: Sida sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sisyrinchium sp. A sensu James & Brown (1993) replace: Sisyrinchium sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sonchus megalocarpa replace: Sonchus megalocarpus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spergularia sp. B sensu Doust (1990) replace: Spergularia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus diander replace: Sporobolus diandrus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus sp. [Sporobolus diander] replace: Sporobolus sp. [Sporobolus diander; NHNSW_2014_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1479,12 +1479,12 @@ taxonomic_updates: replace: Stellaria sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stellaria sp. D sensu Doust (1990) replace: Stellaria sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia sp. A sensu Harden (1992) replace: Styphelia sp. [Styphelia sp. A sensu Harden (1992); NHNSW_2014_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1499,51 +1499,51 @@ taxonomic_updates: replace: Suaeda sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. A sensu Conn (1992) replace: Teucrium sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. D sensu Conn (1992) replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra x merraniae replace: Thelymitra x merraniae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trochocarpa sp. A sensu Wiecek (1992) replace: Trochocarpa sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica sp. A sensu Harden (1992) replace: Veronica sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica sp. B sensu Harden (1992) replace: Veronica sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica sp. C sensu Harden (1992) replace: Veronica sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Westringia species A replace: Westringia sp. [Westringia species A; NHNSW_2014_2] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Zehneria minutiflora replace: Zieria minutiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Gaura mollis, Opuntia macrorhiza subsp. pottsii, Ranunculus aquatilis var. diff --git a/data/NHNSW_2016/metadata.yml b/data/NHNSW_2016/metadata.yml index c9dacc840..ccd581b3c 100644 --- a/data/NHNSW_2016/metadata.yml +++ b/data/NHNSW_2016/metadata.yml @@ -118,41 +118,41 @@ taxonomic_updates: replace: Clematis aristata f. oblongisepala reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Clematis glycinoidesvar. glycinoides replace: Clematis glycinoides var. glycinoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Clematis glycinoidesvar. submutica replace: Clematis glycinoides var. submutica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Derris sp. Daintree replace: Derris sp. (Daintree D.E.Boyland+ 469) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine clandestina var .sericea replace: Glycine clandestina var. sericea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hoya australis subsp. ormicola replace: Hoya australis subsp. oramicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jasminum dallachi replace: Jasminum dallachii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ripopgonum fawcetiianum replace: Ripogonum fawcettianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus molluccanus var. trilobus replace: Rubus moluccanus var. trilobus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: - variable: taxon_name find: Cassytha phaeolasia (pubescens), Desmodium rhytidophyllumsubsp. acutifoliolum, diff --git a/data/NHNSW_2022/metadata.yml b/data/NHNSW_2022/metadata.yml index 8a315a562..100888845 100644 --- a/data/NHNSW_2022/metadata.yml +++ b/data/NHNSW_2022/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% group_by(taxon_name) %>% @@ -145,23 +145,23 @@ taxonomic_updates: replace: Acaena x anserovina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena sp. Thredbo River Gorge (L.A.S.Johnson ;amp; E.F.Constable s.n., 19 Jan 1951) replace: Acaena sp. Thredbo River Gorge (L.A.S.Johnson & E.F.Constable s.n., 19 Jan 1951) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia constricta f. Pubescent form replace: Alstonia constricta Pubescent form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropteris beckleri x tenella replace: Arthropteris x [Arthropteris beckleri x tenella; NHNSW_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -171,52 +171,52 @@ taxonomic_updates: replace: Atriplex sp. B reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia spinulosa var. collina-spinulosa intergrade replace: Banksia spinulosa var. collina reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica variant ;qu;Glabrous ovary;qu; replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Blechnum fullagarii replace: Blechnum fullagari reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. A sensu Harden (1993) replace: Caladenia sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centaurea sp. A sensu Murray (1992) replace: Centaurea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalomanes atrovirens subsp. atrovirens replace: Cephalomanes atrovirens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 ;amp; T.R.Lally) replace: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 & T.R.Lally) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cipadessa baccifera replace: Cipadessa baccifera reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia crocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bowmannii replace: Cyperus bowmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp. Stockton (K.L.Wilson 10541) replace: Cyperus sp. [Cyperus sp. Stockton (K.L.Wilson 10541); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -225,26 +225,26 @@ taxonomic_updates: - find: Dillwynia sp. Ebor (P.C.Jobson 5318 ;amp; S.A.Mills) replace: Dillwynia sp. Ebor (P.C.Jobson 5318 & S.A.Mills) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epidendrum radicans x secundum hybrid complex replace: Epidendrum radicans x Epidendrum secundum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus cucullatus complex replace: Eriochilus cucullatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus conjuncta replace: Eucalyptus x conjuncta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dealbata subsp. dealbata replace: Eucalyptus dealbata var. dealbata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euryops virgineus replace: Euryops sp. [Euryops virgineus; NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -253,7 +253,7 @@ taxonomic_updates: - find: Flacourtia sp. shiptons flat l w jessup gj.d3200 replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fraxinus chinensis replace: Fraxinus sp. [Fraxinus chinensis; NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -263,38 +263,38 @@ taxonomic_updates: replace: Genoplesium sp. Cuspidata (L.M.Copeland 3858) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genoplesium sp. Charmhaven (NSW896673) replace: Genoplesium sp. Charmhaven (NSW 896673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine pacifica replace: Glycine pacifica (Grace 946) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. B sensu Harden (1990) replace: Hibbertia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia stricta subsp. stricta replace: Hibbertia stricta var. stricta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hoffmannseggia glauca replace: Hoffmannseggia glauca reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Houttuynia cordata replace: Houttuynia cordata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Impatiens balfouri replace: Impatiens balfourii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea fimbriosepala replace: Ipomoea sp. [Ipomoea fimbriosepala; NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -304,11 +304,11 @@ taxonomic_updates: replace: Kunzea capitata var. capitata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lenwebbia sp. Main Range (P.R.Sharpe 4877) replace: Lenwebbia sp. Main Range (P.R.Sharpe+ 4877) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium sp. Cooma (J.H.Maiden NSW642748) replace: Lepidium sp. [Lepidium sp. Cooma (J.H.Maiden NSW642748); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -318,34 +318,34 @@ taxonomic_updates: replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luzula densiflora subsp. densiflora replace: Luzula densiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luzula flaccida subsp. flaccida replace: Leucas flaccida var. flaccida reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Margyricarpus pinnatus replace: Margyricarpus pinnatus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) Makinson replace: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia diclina subsp. Pooncarie (W.E. Mulham W811) replace: Muehlenbeckia diclina subsp. Pooncarie (W.E.Mulham W811) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Netrostylis sp. East Coast (D.E. Albrecht 597) replace: Netrostylis sp. [Netrostylis sp. East Coast (D.E. Albrecht 597); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -355,7 +355,7 @@ taxonomic_updates: replace: Notelaea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia sp. sensu I.Telford (1984) replace: Opuntia sp. [Opuntia sp. sensu I.Telford (1984); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -365,7 +365,7 @@ taxonomic_updates: replace: Owenia x reliqua reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora miniata replace: Passiflora sp. [Passiflora miniata; NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -375,7 +375,7 @@ taxonomic_updates: replace: Pelargonium x asperum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persicaria chinensis replace: Persicaria sp. [Persicaria chinensis] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -384,34 +384,34 @@ taxonomic_updates: - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) Vic. Herbarium replace: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderris andromedifolia f. ;qu;andromedifolia;qu; replace: Pomaderris andromedifolia subsp. andromedifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderris andromedifolia f. ;qu;narrow-leaved;qu; replace: Pomaderris andromedifolia f. 'narrow-leaved' reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Pomaderris andromedifolia f. ;qu;small-leaved;qu; replace: Pomaderris andromedifolia subsp. andromedifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Potamogeton tricarinatus auct. non F.Muell. ;amp; A.Benn. ex A.Benn. replace: Potamogeton tricarinatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. A sensu Harden (1993) replace: Prasophyllum sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pteris nipponica replace: Pteris sp. [Pteris nipponica; NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -420,125 +420,125 @@ taxonomic_updates: - find: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 ;amp; J.M.Cohen) replace: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 & J.M.Cohen) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Narrabri (R.G.Coveny 8811 ;amp; S.K.Roy) replace: Pultenaea sp. (Narrabri R.G.Coveny+ 8811) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Newnes (I.R.Telford 5072 ;amp; M.D.Crisp) replace: Pultenaea sp. Newnes (I.R.Telford 5072 & M.D.Crisp) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Shadowgraph Bluff (T. ;amp; J.Whaite 3455) replace: Pultenaea sp. Shadowgraph Bluff (T. & J.Whaite 3455) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. Moonee Creek (King s.n., Nov 1949) replace: Quassia sp. 'Moonee Creek' (King s.n., Nov 1949) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Radermachera sinica replace: Radermachera sinica reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rotheca myricoides subsp. myricoides replace: Rotheca myricoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix matsudana x alba replace: Salix matsudana x Salix alba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x fragilis var. fragilis replace: Salix x fragilis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x sepulcralis var. chrysocoma replace: Salix x sepulcralis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x sepulcralis var. sepulcralis replace: Salix x sepulcralis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scleranthus sp. Fitz;qu;s Hill (J.G.West 5342) replace: Scleranthus sp. Fitz's Hill (J.G.West 5342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sebaea zeyheri subsp. cleistantha replace: Sebaea zeyheri reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. B sensu Harden (1990) replace: Sida sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C sensu Harden (1990) replace: Sida sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum almum replace: Sorghum x almum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum bicolor subsp. almum replace: Sorghum bicolor subsp. x almum reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sorghum bicolor subsp. drummondii replace: Sorghum bicolor subsp. x drummondii reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spiraea x billiardii replace: Spiraea x billardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Suaeda sp. A sensu Harden (1990) replace: Suaeda sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. D sensu Conn (1992) replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra irregularis replace: Thelymitra x irregularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra merraniae replace: Thelymitra merranae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra truncata replace: Thelymitra x truncata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Triticosecale replace: x Triticosecale reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -546,6 +546,7 @@ taxonomic_updates: taxonomic_resolution: genus exclude_observations: - variable: taxon_name - find: Salix humboldtiana cv. ;qu;Pyramidalis;qu;, Salix matsudana cv. ;qu;Tortuosa;qu;, Cyrtomium falcatum ;qu;Rochfordii;qu; + find: Salix humboldtiana cv. ;qu;Pyramidalis;qu;, Salix matsudana cv. ;qu;Tortuosa;qu;, + Cyrtomium falcatum ;qu;Rochfordii;qu; reason: excluding cultivars questions: .na diff --git a/data/NHNSW_2023/metadata.yml b/data/NHNSW_2023/metadata.yml index a5c3af8e9..3ada45767 100644 --- a/data/NHNSW_2023/metadata.yml +++ b/data/NHNSW_2023/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -469,27 +469,32 @@ substitutions: find: rhizome_woody rhizome_tuberous replace: rhizome_woody rhizome_fleshy taxonomic_updates: +- find: Acacia melvillei-homalophylla + replace: Acacia sp. [Acacia melvillei-homalophylla; NHNSW_2023] + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2023-05-24) + taxonomic_resolution: genus - find: Acaena anserovina replace: Acaena x anserovina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena sp. Thredbo River Gorge (L.A.S.Johnson ;amp; E.F.Constable s.n., 19 Jan 1951) replace: Acaena sp. Thredbo River Gorge (L.A.S.Johnson & E.F.Constable s.n., 19 Jan 1951) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia constricta f. Pubescent form replace: Alstonia constricta Pubescent form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropteris beckleri x tenella replace: Arthropteris x [Arthropteris beckleri x tenella; NHNSW_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -499,52 +504,52 @@ taxonomic_updates: replace: Atriplex sp. B reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia spinulosa var. collina-spinulosa intergrade replace: Banksia spinulosa var. collina reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica variant ;qu;Glabrous ovary;qu; replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Blechnum fullagarii replace: Blechnum fullagari reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. A sensu Harden (1993) replace: Caladenia sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centaurea sp. A sensu Murray (1992) replace: Centaurea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalomanes atrovirens subsp. atrovirens replace: Cephalomanes atrovirens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 ;amp; T.R.Lally) replace: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 & T.R.Lally) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cipadessa baccifera replace: Cipadessa baccifera reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia crocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bowmannii replace: Cyperus bowmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sp. Stockton (K.L.Wilson 10541) replace: Cyperus sp. [Cyperus sp. Stockton (K.L.Wilson 10541); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -553,75 +558,75 @@ taxonomic_updates: - find: Dillwynia sp. Ebor (P.C.Jobson 5318 ;amp; S.A.Mills) replace: Dillwynia sp. Ebor (P.C.Jobson 5318 & S.A.Mills) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epidendrum radicans x secundum hybrid complex replace: Epidendrum radicans x Epidendrum secundum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus cucullatus complex replace: Eriochilus cucullatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus conjuncta replace: Eucalyptus x conjuncta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dealbata subsp. dealbata replace: Eucalyptus dealbata var. dealbata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Flacourtia sp. shiptons flat l w jessup gj.d3200 replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genoplesium cuspidatum replace: Genoplesium sp. Cuspidata (L.M.Copeland 3858) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genoplesium sp. Charmhaven (NSW896673) replace: Genoplesium sp. Charmhaven (NSW 896673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine pacifica replace: Glycine pacifica (Grace 946) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. B sensu Harden (1990) replace: Hibbertia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia stricta subsp. stricta replace: Hibbertia stricta var. stricta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hoffmannseggia glauca replace: Hoffmannseggia glauca reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Houttuynia cordata replace: Houttuynia cordata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Impatiens balfouri replace: Impatiens balfourii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea capitata subsp. capitata replace: Kunzea capitata var. capitata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lenwebbia sp. Main Range (P.R.Sharpe 4877) replace: Lenwebbia sp. Main Range (P.R.Sharpe+ 4877) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium sp. Cooma (J.H.Maiden NSW642748) replace: Lepidium sp. [Lepidium sp. Cooma (J.H.Maiden NSW642748); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -631,34 +636,34 @@ taxonomic_updates: replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luzula densiflora subsp. densiflora replace: Luzula densiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luzula flaccida subsp. flaccida replace: Leucas flaccida var. flaccida reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Margyricarpus pinnatus replace: Margyricarpus pinnatus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) Makinson replace: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia diclina subsp. Pooncarie (W.E. Mulham W811) replace: Muehlenbeckia diclina subsp. Pooncarie (W.E.Mulham W811) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Netrostylis sp. East Coast (D.E. Albrecht 597) replace: Netrostylis sp. [Netrostylis sp. East Coast (D.E. Albrecht 597); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -668,7 +673,7 @@ taxonomic_updates: replace: Notelaea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia sp. sensu I.Telford (1984) replace: Opuntia sp. [Opuntia sp. sensu I.Telford (1984); NHNSW_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -678,175 +683,170 @@ taxonomic_updates: replace: Owenia x reliqua reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium asperum replace: Pelargonium x asperum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) Vic. Herbarium replace: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) reason: match_05. Automatic alignment with scientific name in APC accepted list (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderris andromedifolia f. ;qu;andromedifolia;qu; replace: Pomaderris andromedifolia subsp. andromedifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderris andromedifolia f. ;qu;narrow-leaved;qu; replace: Pomaderris andromedifolia f. 'narrow-leaved' reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Pomaderris andromedifolia f. ;qu;small-leaved;qu; replace: Pomaderris andromedifolia subsp. andromedifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Potamogeton tricarinatus auct. non F.Muell. ;amp; A.Benn. ex A.Benn. replace: Potamogeton tricarinatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. A sensu Harden (1993) replace: Prasophyllum sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 ;amp; J.M.Cohen) replace: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 & J.M.Cohen) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Narrabri (R.G.Coveny 8811 ;amp; S.K.Roy) replace: Pultenaea sp. (Narrabri R.G.Coveny+ 8811) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Newnes (I.R.Telford 5072 ;amp; M.D.Crisp) replace: Pultenaea sp. Newnes (I.R.Telford 5072 & M.D.Crisp) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Shadowgraph Bluff (T. ;amp; J.Whaite 3455) replace: Pultenaea sp. Shadowgraph Bluff (T. & J.Whaite 3455) reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. Moonee Creek (King s.n., Nov 1949) replace: Quassia sp. 'Moonee Creek' (King s.n., Nov 1949) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Radermachera sinica replace: Radermachera sinica reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rotheca myricoides subsp. myricoides replace: Rotheca myricoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix matsudana x alba replace: Salix matsudana x Salix alba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x fragilis var. fragilis replace: Salix x fragilis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x sepulcralis var. chrysocoma replace: Salix x sepulcralis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x sepulcralis var. sepulcralis replace: Salix x sepulcralis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scleranthus sp. Fitz;qu;s Hill (J.G.West 5342) replace: Scleranthus sp. Fitz's Hill (J.G.West 5342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sebaea zeyheri subsp. cleistantha replace: Sebaea zeyheri reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. B sensu Harden (1990) replace: Sida sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C sensu Harden (1990) replace: Sida sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum almum replace: Sorghum x almum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum bicolor subsp. almum replace: Sorghum bicolor subsp. x almum reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sorghum bicolor subsp. drummondii replace: Sorghum bicolor subsp. x drummondii reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spiraea x billiardii replace: Spiraea x billardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Suaeda sp. A sensu Harden (1990) replace: Suaeda sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. D sensu Conn (1992) replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra irregularis replace: Thelymitra x irregularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra merraniae replace: Thelymitra merranae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra truncata replace: Thelymitra x truncata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Triticosecale replace: x Triticosecale reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: Acacia melvillei-homalophylla - replace: Acacia sp. [Acacia melvillei-homalophylla; NHNSW_2023] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2023-05-24) - taxonomic_resolution: genus exclude_observations: - variable: taxon_name find: Salix humboldtiana cv. ;qu;Pyramidalis;qu;, Salix matsudana cv. ;qu;Tortuosa;qu;, diff --git a/data/NSWFRD_2014/metadata.yml b/data/NSWFRD_2014/metadata.yml index 8b7d36634..28ecfe640 100644 --- a/data/NSWFRD_2014/metadata.yml +++ b/data/NSWFRD_2014/metadata.yml @@ -33,7 +33,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( seed_longevity_categorical = `Seed storage`, @@ -1987,7 +1987,7 @@ substitutions: find: soil replace: soil_seedbank - trait_name: reproductive_maturity - find: '2-Jan' + find: 2-Jan replace: '1.5' - trait_name: lifespan find: S @@ -2011,7 +2011,7 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp. aff. microphylla replace: Boronia sp. [Boronia sp. aff. microphylla; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2020,17 +2020,17 @@ taxonomic_updates: - find: Bossiaea neo-anglica replace: Bossiaea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Callistemon sp. Torrington (H.J.Wismann NE36256) NE Herbarium + replace: Callistemon sp. Torrington (H.J.Wismann NE36256) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Callistemon sp. aff. flavovirens replace: Callistemon sp. [Callistemon sp. aff. flavovirens; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Callistemon sp. Torrington (H.J.Wismann NE36256) NE Herbarium - replace: Callistemon sp. Torrington (H.J.Wismann NE36256) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-10) - taxonomic_resolution: Species - find: Cassinia sp. 'Cave Creek' replace: Cassinia sp. [Cassinia sp. 'Cave Creek'; NSWFRD_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -2040,12 +2040,12 @@ taxonomic_updates: replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa reflexa (resprouter green flowered) replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia sp. aff. crocata (Bogong Swamp) replace: Craspedia sp. [Craspedia sp. aff. crocata (Bogong Swamp); NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2054,37 +2054,37 @@ taxonomic_updates: - find: Dillwynia retorta species complex replace: Dillwynia retorta reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa subsp. Black Fruits replace: Dodonaea viscosa var. megazyga reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Epacris microphylla = gunnii replace: Epacris microphylla var. gunnii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Geranium sp. 'alpine swamps' replace: Geranium sp. Alpine swamps (N.G.Walsh 613) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hardenbergia violacea (obligate seeder pop.) replace: Hardenbergia violacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia riparia 'Gibraltar Range' replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia riparia 'Grassy woodlands' replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. aff. obtusifolia replace: Hibbertia sp. [Hibbertia sp. aff. obtusifolia; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2104,16 +2104,16 @@ taxonomic_updates: replace: Kunzea bracteolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus var. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon neo-anglicus replace: Leucopogon neoanglicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. aff. appressus replace: Leucopogon sp. [Leucopogon sp. aff. appressus; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2127,7 +2127,7 @@ taxonomic_updates: - find: Lezpedeza juncea subsp. sericea replace: Lespedeza juncea subsp. sericea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Logania sp. aff. albiflora (narrow leaves, rocky habitat) replace: Logania sp. [Logania sp. aff. albiflora (narrow leaves, rocky habitat); NSWFRD_2014] @@ -2137,7 +2137,7 @@ taxonomic_updates: - find: Melaleuca sp nov./comboynensis replace: Callistemon comboynensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. aff. comboynensis ('Big Red') replace: Melaleuca sp. [Melaleuca sp. aff. comboynensis ('Big Red'); NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2151,11 +2151,11 @@ taxonomic_updates: - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Olearia secundiflorus replace: Ozothamnus secundiflorus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. aff. elliptica replace: Olearia sp. [Olearia sp. aff. elliptica; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2165,12 +2165,12 @@ taxonomic_updates: replace: Oxylobium arborescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxylobium arborescens (Tall form) replace: Oxylobium arborescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus sp. 'Basket swamp' replace: Ozothamnus sp. [Ozothamnus sp. 'Basket swamp'; NSWFRD_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -2184,7 +2184,7 @@ taxonomic_updates: - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. 'Long Point' replace: Pimelea sp. [Pimelea sp. 'Long Point'; NSWFRD_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -2193,7 +2193,7 @@ taxonomic_updates: - find: Polyscias sambucifolia subsp. sambucifolia replace: Polyscias sambucifolia subsp. sambucifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pomaderiris (long Point small leaf) replace: Pomaderris sp. [Pomaderiris (long Point small leaf); NSWFRD_2014] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) @@ -2202,12 +2202,12 @@ taxonomic_updates: replace: Prostanthera scutellarioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera scutellarioides 'Gibraltar Range' replace: Prostanthera scutellarioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sp. aff. howelliae replace: Prostanthera sp. [Prostanthera sp. aff. howelliae; NSWFRD_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2222,25 +2222,25 @@ taxonomic_updates: replace: Rubus discolor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taraxacum officinale spp. agg. replace: Taraxacum officinale reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra merraniae replace: Thelymitra merranae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trifolium dubens replace: Trifolium dubium reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vernonia cinerea var. cinerea replace: Vernonia cinerea subsp. cinerea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthorrhoea Gibraltar replace: Xanthorrhoea sp. [Xanthorrhoea Gibraltar; NSWFRD_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/NTH_2014/metadata.yml b/data/NTH_2014/metadata.yml index 89102c1bc..1f05d19d9 100644 --- a/data/NTH_2014/metadata.yml +++ b/data/NTH_2014/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `flowering time` = convert_month_range_vec_to_binary(`flowering time`), @@ -536,16 +536,21 @@ taxonomic_updates: - find: Acacia Douglas R. replace: Acacia douglasii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acmena hemilampra subsp. Hemilampra + replace: Acmena hemilampra subsp. hemilampra + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-23) + taxonomic_resolution: subspecies - find: Asteromyrtus symphocarpa replace: Asteromyrtus symphyocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos 'Kakadu' replace: Austrodolichos sp. 'Kakadu' reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus eticulatus replace: Cajanus sp. [Cajanus eticulatus; NTH_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -554,7 +559,7 @@ taxonomic_updates: - find: Cajanus maritima replace: Causonis maritima reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus papuana replace: Cajanus sp. [Cajanus papuana; NTH_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -568,17 +573,17 @@ taxonomic_updates: - find: Chamaecrista nictitans replace: Chamaecrista nigricans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaecrista sp. Cassia harneyi replace: Chamaecrista sp. [Cassia harneyi Specht] reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cochlospermum sp. Arnhem Land replace: Cochlospermum sp. Arnhem Land (I.D.Cowie 5916) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. aff. dockr illii Airy Shaw replace: Croton sp. [Croton sp. aff. dockr illii Airy Shaw; NTH_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -588,166 +593,161 @@ taxonomic_updates: replace: Cucumis sp. Gunlom (J.L.McKean 864b) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrolobium 'Green Ant Ck' replace: Dendrolobium sp. 'Green Ant Ck' reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium 'Darwin' replace: Desmodium sp. 'Darwin' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Desmodium ichostachyum - replace: Desmodium trichostachyum - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium 'Limbunya' replace: Desmodium sp. 'Limbunya' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium Melville Is. replace: Desmodium sp. 'Melville Is.' reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium Pine Ck replace: Desmodium sp. 'Pine Ck' reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Desmodium ichostachyum + replace: Desmodium trichostachyum + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) + taxonomic_resolution: species - find: Excoecaria parviflora replace: Excoecaria parvifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: exocarpus latifolius - replace: Exocarpos latifolius - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flemingia Rum Jungle replace: Flemingia sp. 'Rum Jungle' reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia Litchfield replace: Galactia sp. Litchfield (S.T.Blake 16645) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia mueller replace: Galactia muelleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea dryandi subsp. Dasycarpa replace: Grevillea dryandri subsp. dasycarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea dryandi subsp. Dryandi replace: Grevillea dryandri subsp. dryandri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea pyramidalid replace: Grevillea pyramidalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema sp. [Brachysema uniflorum Benth.] replace: Leptosema uniflorum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species -- find: Muehlenbeckia arnhemica - replace: Muehlenbeckia arnhemica MS - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia Mt Brockman (L.A. Craven 2357) replace: Muehlenbeckia sp. Mt Brockman (L.A.Craven 2357) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Muehlenbeckia arnhemica + replace: Muehlenbeckia arnhemica MS + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Neptunia 'Darwin' replace: Neptunia sp. 'Darwin' reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus 'Golden Sands' replace: Phyllanthus sp. 'Golden Sands' reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Santalum lanceolata replace: Santalum lanceolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus Darwin' replace: Sauropus sp. 'Darwin' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus Melville Is.' replace: Sauropus sp. 'Melville Is.' reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus Tiwi' replace: Sauropus sp. 'Tiwi' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus top end' replace: Stenocarpus 'Top End' reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia Hayes Ck replace: Tephrosia sp. 'Hayes Ck' reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia Katherine Gorge replace: Tephrosia sp. Katherine (H.S.McKee 8509) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichosanthes sp. Fine Leaf replace: Trichosanthes sp. Fine leaf (L.A.Craven 7930) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichosanthes sp. Kakadu replace: Trichosanthes sp. Kakadu (C.R.Dunlop 6639) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uraria Litchfield replace: Uraria sp. Litchfield (C.R.Dunlop 5220) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vertcordia cunninghamii replace: Verticordia cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vertcordia decussata replace: Verticordia decussata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vertcordia verticillata replace: Verticordia verticillata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia Darwin Lawns replace: Zornia sp. Darwin (J.S.Muspratt 186) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia muelleriana subsp. Mulleriana replace: Zornia muelleriana subsp. muelleriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies -- find: Acmena hemilampra subsp. Hemilampra - replace: Acmena hemilampra subsp. hemilampra - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-23) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: exocarpus latifolius + replace: Exocarpos latifolius + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/NTH_2022/metadata.yml b/data/NTH_2022/metadata.yml index 99432cf12..5ea846b93 100644 --- a/data/NTH_2022/metadata.yml +++ b/data/NTH_2022/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% mutate( @@ -41,9 +41,9 @@ dataset: description: Plant growth form data extracted from the NT Flora Online basis_of_record: literature life_stage: adult - sampling_strategy: This dataset is sourced from the online NT Flora (version - date 2022-05-06). Briefly, the textual descriptions of each taxon were downloaded - and organised into a tabular format of individual taxon names and their corresponding + sampling_strategy: This dataset is sourced from the online NT Flora (version date + 2022-05-06). Briefly, the textual descriptions of each taxon were downloaded and + organised into a tabular format of individual taxon names and their corresponding text using R coding script. Sentences and phrases were categorised using a large glossary of botanical terminology as referring to one of the following, the entire organism, stem, leaf, flower, fruit/seed, roots and environment/habitat. Key terms @@ -141,7 +141,7 @@ taxonomic_updates: - find: Abutilon sp. Mataranka replace: Abutilon sp. (Mataranka) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. China Wall replace: Acacia sp. [Acacia sp. China Wall; NTH_2022] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -151,45 +151,45 @@ taxonomic_updates: replace: Acacia sp. El Sharana (N.B.Byrnes 1326) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Gove replace: Acacia sp. Gove (N.B.Byrnes 2586) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. holey trunk - replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Krichauff Range replace: Acacia sp. Krichauff Range (A.Soos 241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake Woods replace: Acacia sp. [Acacia sp. Lake Woods; NTH_2022] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Acacia sp. holey trunk + replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: species - find: Acacia sp. laterite replace: Acacia sp. Laterite (I.D.Cowie 8754) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida sp. Bradshaw replace: Aristida sp. Bradshaw (C.R.Michell 2302) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bonamia xxxmedia replace: Bonamia media reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton sp. Wangi replace: Brachychiton Wangi (S.E.Pickering 20) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Burmannia championii replace: Burmannia sp. [Burmannia championii; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -204,7 +204,7 @@ taxonomic_updates: replace: Caesia sp. Mt Zeil (G.Griffin 05/Oct/91) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus sp. Purnululu replace: Cajanus sp. [Cajanus sp. Purnululu; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -214,22 +214,22 @@ taxonomic_updates: replace: Calandrinia sp. Berry Springs (M.O.Parker 855) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Calandrinia sp. oblong - replace: Calandrinia sp. oblong (C.R.Dunlop 3260) - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Yinberrie Hills replace: Calandrinia sp. Yinberrie Hills (J.L.Egan 4450) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calandrinia sp. oblong + replace: Calandrinia sp. oblong (C.R.Dunlop 3260) + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Centrolepis sp. carinate replace: Centrolepis sp. carinate (L.A.Craven & C.R.Dunlop 6668) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centrolepis sp. squamose seeds replace: Centrolepis sp. [Centrolepis sp. squamose seeds; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -244,44 +244,44 @@ taxonomic_updates: replace: Commelina sp. Sandstone (R.J.Fensham 739) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyrtophyllum fragrans replace: Cyrtophyllum fragrans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dentella arnhemensis replace: Dentella arnhemensis MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Arnhem Land replace: Dicarpidium sp. Arnhem Land (L.A.Craven 2494) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Purnululu replace: Dicarpidium sp. Purnululu (K.A.Menkhorst 766) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera dilatato-petiolaris replace: Drosera dilatatopetiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eclipta sp. Gove replace: Eclipta 'Gove entity' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eclipta sp. Humpty Doo replace: Eclipta (Humpty Doo entity) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Edward replace: Eremophila sp. Mt Edward (D.E.Albrecht 10981 & P.J.Latz) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne sp. Marrawal replace: Eriachne sp. [Eriachne sp. Marrawal; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -291,7 +291,7 @@ taxonomic_updates: replace: Erythroxylum sp. (Cholmondely Creek J.R.Clarkson 9367) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Brian Creek replace: Fimbristylis sp. [Fimbristylis sp. Brian Creek; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -301,74 +301,74 @@ taxonomic_updates: replace: Flemingia sp. Sericea (S.T.Blake 16726) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia sp. Litchfield replace: Galactia sp. Litchfield (S.T.Blake 16645) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia sp. Fitzmaurice replace: Gardenia sp. Fitzmaurice (G.J.Leach 4207) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp. Talipata replace: Glycine sp. Talipata (B.G.Thomson 699) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Chewings Range replace: Hibbertia sp. Chewings Range (P.K.Latz 10660) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Mount Howship replace: Hibbertia sp. Mount Howship (C.R.Dunlop 6656) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. South Magela replace: Hibbertia sp. South Magela (K.G.Brennan 896) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Harts Range replace: Hydrocotyle sp. 6 (Harts Range) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Watarrka replace: Hydrocotyle sp. Watarrka (A.C.Beauglehole 20471) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus sp. MacDonnell Ranges replace: Juncus sp. MacDonnell Ranges (B.G.Thomson 3412) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Rainbow Valley replace: Maireana sp. Rainbow Valley (A91207) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murdannia sp. Top End replace: Murdannia sp. Top End (G.M.Chippendale 7726) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea sp. Elcho Island replace: Notelaea sp. (Elcho Island) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Mt Edward replace: Olearia sp. Mt Edward (G.Griffin 28/Sep/91) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Owenia sp. Top End replace: Owenia sp. [Owenia sp. Top End; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -378,209 +378,209 @@ taxonomic_updates: replace: Parsonsia sp. Melville Island (J.Russell-Smith 2036) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. broad tuberculate seeds replace: Phyllanthus sp. Broad tuberculate seeds (B.G.Thompson 2370) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Donydji replace: Pimelea sp. Donydji (C.R.Dunlop 8498) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. sand dunes replace: Pomax sp. Sand dunes (P.G.Wilson 752) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Portulaca sp. clay soil - replace: Portulaca sp. clay soil (S.T.Blake 17854) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. Elliott replace: Portulaca sp. Elliott (D.Tulloch NW48) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Portulaca sp. finely echinate - replace: Portulaca sp. finely echinate (D.G.Tulloch 41) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. Nitmiluk replace: Portulaca sp. Nitmiluk (C.R.Michell 2648) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Portulaca sp. clay soil + replace: Portulaca sp. clay soil (S.T.Blake 17854) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Portulaca sp. finely echinate + replace: Portulaca sp. finely echinate (D.G.Tulloch 41) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Portulaca sp. rock pools replace: Portulaca sp. rock pools (K.A.Menkhorst 310) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. smooth seed replace: Portulaca sp. smooth seed (C.R.Michell 2286) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Mt Liebig replace: Scaevola sp. Mt Liebig (P.K.Latz 2277) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Douglas Springs replace: Schoenus sp. Douglas Springs (C.R.Michell 2787) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp. saline soils replace: Sclerolaena sp. [Sclerolaena sp. saline soils; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus -- find: Sedopsis sp. sandstone - replace: Sedopsis sp. sandstone (G.J.Leach 3524) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species - find: Sedopsis sp. West Arnhem replace: Sedopsis sp. West Arnhem (I.D.Cowie 8677) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sedopsis sp. sandstone + replace: Sedopsis sp. sandstone (G.J.Leach 3524) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Seringia katatona replace: Seringia x katatona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Ambalindum replace: Sida sp. Ambalindum (C.R.Dunlop 2080) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bond Springs replace: Sida sp. Bond Springs (D.J.Nelson 2538) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Chewings Range replace: Sida sp. Chewings Range (D.E.Albrecht 10558) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. golden calyces - replace: Sida sp. golden calyces (H.N.Foote) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hale River replace: Sida sp. Hale River (P.K.Latz 12036) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Huckitta replace: Sida sp. Huckitta (P.K.Latz 12592) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Kathleen Springs replace: Sida sp. Kathleen Springs (A.C.Beauglehole 26934) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. limestone - replace: Sida sp. limestone (D.E.Albrecht 5748) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Mt Bundey replace: Sida sp. Mt Bundey (J.Russell-Smith 8104) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. pindan - replace: Sida sp. Pindan (B.G.Thomson 3398) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rainbow Valley replace: Sida sp. Rainbow Valley (D.E.Albrecht 6601) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Simpson Desert dunes replace: Sida sp. Simpson Desert dunes (P.K.Latz 18008) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Wakaya Desert replace: Sida sp. Wakaya Desert (C.Dunlop 1984) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Walhallow Station replace: Sida sp. Walhallow Station (C.Edgoose 28/Oct/94) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Watarrka replace: Sida sp. Watarrka (D.E.Albrecht 8672) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Western sand dunes replace: Sida sp. Western sand dunes (P.K.Latz 11980) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. golden calyces + replace: Sida sp. golden calyces (H.N.Foote) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. limestone + replace: Sida sp. limestone (D.E.Albrecht 5748) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. pindan + replace: Sida sp. Pindan (B.G.Thomson 3398) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Spermacoce gilliesiae replace: Spermacoce gilliesae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spigelia anthelmia replace: Spigelia anthelmia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia sp. leafless replace: Stackhousia sp. leafless (I.D.Cowie 140078) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Tanami replace: Stemodia sp. Tanami (P.K.Latz 8218) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. sparse pinnae replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia sp. Black Point replace: Terminalia sp. Black Point (D20544) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. Newhaven replace: Triglochin sp. Newhaven (P.Latz 16797) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Dinner Creek replace: Triodia sp. [Triodia sp. Dinner Creek; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -590,17 +590,17 @@ taxonomic_updates: replace: Triodia sp. Matt Wilson (I.D.Cowie 2446 & P.S.Brocklehurst) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Bradshaw replace: Triumfetta sp. Bradshaw (B.M.Stuckey 57) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. fleshy replace: Triumfetta sp. fleshy (C.R.Michell 2169) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Charles Darwin replace: Typhonium sp. [Typhonium sp. Charles Darwin; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -615,17 +615,17 @@ taxonomic_updates: replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uraria sp. Litchfield replace: Uraria sp. Litchfield (C.R.Dunlop 5220) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. Darwin replace: Zornia sp. Darwin (J.S.Muspratt 186) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Riccia corrugata diff --git a/data/NTH_2023/metadata.yml b/data/NTH_2023/metadata.yml index 7707e57b2..65f528a11 100644 --- a/data/NTH_2023/metadata.yml +++ b/data/NTH_2023/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -135,7 +135,7 @@ contexts: description: Trait value inferred from a higher level taxon description. - context_property: replicate observations category: temporal_context - var_in: observation_number + var_in: observation_number - context_property: entity measured category: entity_context var_in: entity_measured @@ -431,7 +431,7 @@ taxonomic_updates: - find: Abutilon sp. Mataranka replace: Abutilon sp. (Mataranka) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. China Wall replace: Acacia sp. [Acacia sp. China Wall; NTH_2022] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -441,45 +441,45 @@ taxonomic_updates: replace: Acacia sp. El Sharana (N.B.Byrnes 1326) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Gove replace: Acacia sp. Gove (N.B.Byrnes 2586) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. holey trunk - replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Krichauff Range replace: Acacia sp. Krichauff Range (A.Soos 241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake Woods replace: Acacia sp. [Acacia sp. Lake Woods; NTH_2022] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Acacia sp. holey trunk + replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: species - find: Acacia sp. laterite replace: Acacia sp. Laterite (I.D.Cowie 8754) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida sp. Bradshaw replace: Aristida sp. Bradshaw (C.R.Michell 2302) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bonamia xxxmedia replace: Bonamia media reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton sp. Wangi replace: Brachychiton Wangi (S.E.Pickering 20) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Burmannia championii replace: Burmannia sp. [Burmannia championii; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -494,7 +494,7 @@ taxonomic_updates: replace: Caesia sp. Mt Zeil (G.Griffin 05/Oct/91) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus sp. Purnululu replace: Cajanus sp. [Cajanus sp. Purnululu; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -504,22 +504,22 @@ taxonomic_updates: replace: Calandrinia sp. Berry Springs (M.O.Parker 855) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Calandrinia sp. oblong - replace: Calandrinia sp. oblong (C.R.Dunlop 3260) - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Yinberrie Hills replace: Calandrinia sp. Yinberrie Hills (J.L.Egan 4450) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calandrinia sp. oblong + replace: Calandrinia sp. oblong (C.R.Dunlop 3260) + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Centrolepis sp. carinate replace: Centrolepis sp. carinate (L.A.Craven & C.R.Dunlop 6668) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centrolepis sp. squamose seeds replace: Centrolepis sp. [Centrolepis sp. squamose seeds; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -534,40 +534,40 @@ taxonomic_updates: replace: Commelina sp. Sandstone (R.J.Fensham 739) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dentella arnhemensis replace: Dentella arnhemensis MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Arnhem Land replace: Dicarpidium sp. Arnhem Land (L.A.Craven 2494) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Purnululu replace: Dicarpidium sp. Purnululu (K.A.Menkhorst 766) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera dilatato-petiolaris replace: Drosera dilatatopetiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eclipta sp. Gove replace: Eclipta 'Gove entity' reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eclipta sp. Humpty Doo replace: Eclipta (Humpty Doo entity) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Edward replace: Eremophila sp. Mt Edward (D.E.Albrecht 10981 & P.J.Latz) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne sp. Marrawal replace: Eriachne sp. [Eriachne sp. Marrawal; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -577,7 +577,7 @@ taxonomic_updates: replace: Erythroxylum sp. (Cholmondely Creek J.R.Clarkson 9367) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Brian Creek replace: Fimbristylis sp. [Fimbristylis sp. Brian Creek; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -587,74 +587,74 @@ taxonomic_updates: replace: Flemingia sp. Sericea (S.T.Blake 16726) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia sp. Litchfield replace: Galactia sp. Litchfield (S.T.Blake 16645) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia sp. Fitzmaurice replace: Gardenia sp. Fitzmaurice (G.J.Leach 4207) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine sp. Talipata replace: Glycine sp. Talipata (B.G.Thomson 699) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Chewings Range replace: Hibbertia sp. Chewings Range (P.K.Latz 10660) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Mount Howship replace: Hibbertia sp. Mount Howship (C.R.Dunlop 6656) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. South Magela replace: Hibbertia sp. South Magela (K.G.Brennan 896) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Harts Range replace: Hydrocotyle sp. 6 (Harts Range) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Watarrka replace: Hydrocotyle sp. Watarrka (A.C.Beauglehole 20471) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus sp. MacDonnell Ranges replace: Juncus sp. MacDonnell Ranges (B.G.Thomson 3412) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Rainbow Valley replace: Maireana sp. Rainbow Valley (A91207) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murdannia sp. Top End replace: Murdannia sp. Top End (G.M.Chippendale 7726) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notelaea sp. Elcho Island replace: Notelaea sp. (Elcho Island) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Mt Edward replace: Olearia sp. Mt Edward (G.Griffin 28/Sep/91) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Owenia sp. Top End replace: Owenia sp. [Owenia sp. Top End; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -664,205 +664,205 @@ taxonomic_updates: replace: Parsonsia sp. Melville Island (J.Russell-Smith 2036) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. broad tuberculate seeds replace: Phyllanthus sp. Broad tuberculate seeds (B.G.Thompson 2370) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Donydji replace: Pimelea sp. Donydji (C.R.Dunlop 8498) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. sand dunes replace: Pomax sp. Sand dunes (P.G.Wilson 752) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Portulaca sp. clay soil - replace: Portulaca sp. clay soil (S.T.Blake 17854) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. Elliott replace: Portulaca sp. Elliott (D.Tulloch NW48) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Portulaca sp. finely echinate - replace: Portulaca sp. finely echinate (D.G.Tulloch 41) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. Nitmiluk replace: Portulaca sp. Nitmiluk (C.R.Michell 2648) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Portulaca sp. clay soil + replace: Portulaca sp. clay soil (S.T.Blake 17854) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Portulaca sp. finely echinate + replace: Portulaca sp. finely echinate (D.G.Tulloch 41) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Portulaca sp. rock pools replace: Portulaca sp. rock pools (K.A.Menkhorst 310) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca sp. smooth seed replace: Portulaca sp. smooth seed (C.R.Michell 2286) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizophora lamarckii replace: Rhizophora x lamarckii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Mt Liebig replace: Scaevola sp. Mt Liebig (P.K.Latz 2277) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Douglas Springs replace: Schoenus sp. Douglas Springs (C.R.Michell 2787) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp. saline soils replace: Sclerolaena sp. [Sclerolaena sp. saline soils; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus -- find: Sedopsis sp. sandstone - replace: Sedopsis sp. sandstone (G.J.Leach 3524) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species - find: Sedopsis sp. West Arnhem replace: Sedopsis sp. West Arnhem (I.D.Cowie 8677) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sedopsis sp. sandstone + replace: Sedopsis sp. sandstone (G.J.Leach 3524) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Seringia katatona replace: Seringia x katatona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Ambalindum replace: Sida sp. Ambalindum (C.R.Dunlop 2080) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bond Springs replace: Sida sp. Bond Springs (D.J.Nelson 2538) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Chewings Range replace: Sida sp. Chewings Range (D.E.Albrecht 10558) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. golden calyces - replace: Sida sp. golden calyces (H.N.Foote) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hale River replace: Sida sp. Hale River (P.K.Latz 12036) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Huckitta replace: Sida sp. Huckitta (P.K.Latz 12592) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Kathleen Springs replace: Sida sp. Kathleen Springs (A.C.Beauglehole 26934) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. limestone - replace: Sida sp. limestone (D.E.Albrecht 5748) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Mt Bundey replace: Sida sp. Mt Bundey (J.Russell-Smith 8104) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. pindan - replace: Sida sp. Pindan (B.G.Thomson 3398) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rainbow Valley replace: Sida sp. Rainbow Valley (D.E.Albrecht 6601) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Simpson Desert dunes replace: Sida sp. Simpson Desert dunes (P.K.Latz 18008) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Wakaya Desert replace: Sida sp. Wakaya Desert (C.Dunlop 1984) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Walhallow Station replace: Sida sp. Walhallow Station (C.Edgoose 28/Oct/94) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Watarrka replace: Sida sp. Watarrka (D.E.Albrecht 8672) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Western sand dunes replace: Sida sp. Western sand dunes (P.K.Latz 11980) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. golden calyces + replace: Sida sp. golden calyces (H.N.Foote) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. limestone + replace: Sida sp. limestone (D.E.Albrecht 5748) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. pindan + replace: Sida sp. Pindan (B.G.Thomson 3398) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Spermacoce gilliesiae replace: Spermacoce gilliesae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia sp. leafless replace: Stackhousia sp. leafless (I.D.Cowie 140078) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Tanami replace: Stemodia sp. Tanami (P.K.Latz 8218) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. sparse pinnae replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia sp. Black Point replace: Terminalia sp. Black Point (D20544) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. Newhaven replace: Triglochin sp. Newhaven (P.Latz 16797) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Dinner Creek replace: Triodia sp. [Triodia sp. Dinner Creek; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -872,17 +872,17 @@ taxonomic_updates: replace: Triodia sp. Matt Wilson (I.D.Cowie 2446 & P.S.Brocklehurst) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Bradshaw replace: Triumfetta sp. Bradshaw (B.M.Stuckey 57) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. fleshy replace: Triumfetta sp. fleshy (C.R.Michell 2169) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Charles Darwin replace: Typhonium sp. [Typhonium sp. Charles Darwin; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -897,17 +897,17 @@ taxonomic_updates: replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uraria sp. Litchfield replace: Uraria sp. Litchfield (C.R.Dunlop 5220) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. Darwin replace: Zornia sp. Darwin (J.S.Muspratt 186) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Riccia corrugata diff --git a/data/Nano_2011/metadata.yml b/data/Nano_2011/metadata.yml index bdb2f4aa0..001a58b42 100644 --- a/data/Nano_2011/metadata.yml +++ b/data/Nano_2011/metadata.yml @@ -36,7 +36,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Southern region of the Northern Territory", @@ -410,1634 +410,1550 @@ substitutions: find: VI replace: epicormic_buds taxonomic_updates: -- find: Tephrosia lithosperma R.Butcher & Cowie - replace: Tephrosia sp. Magazine Hill (P.Jones 365) - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Senna artemisioides nothosubsp. sturtii - replace: Senna artemisioides subsp. x sturtii - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies -- find: Senna artemisioides nothosubsp. coriacea - replace: Senna artemisioides subsp. x coriacea - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies -- find: Senna artemisioides nothosubsp. artemisioides - replace: Senna artemisioides subsp. x artemisioides - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies -- find: Jasminum didymum G.Forst. subsp. lineare (R.Br.) P.S.Green - replace: Jasminum didymum subsp. lineare - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Varietas -- find: Indigofera sp. MacDonnell Ranges (P.K.Latz 11587) Peter Wilson - replace: Indigofera cornuligera - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Crotalaria crassipes Hook. - replace: Crotalaria novae-hollandiae subsp. crassipes - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies -- find: Acacia sp. holey trunk (P.K.Latz 12458) - replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Pomax ammophila Ngugi - replace: Pomax ammophila - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Desmodium pycnotrichum Pedley - replace: Grona pycnotricha - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Desmodium velutinum (Willd.) DC. - replace: Polhillides velutina - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Gnaphalium diamantinensis Paul G.Wilson - replace: Gnaphalium diamantinense - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Phyllanthus hebecarpus Benth. - replace: Phyllanthus carpentariae - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Senna artemisioides subsp. petiolaris - replace: Senna artemisioides subsp. x petiolaris - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies -- find: Tephrosia insolens R.Butcher & Cowie - replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Brachyachne convergens (F.Muell.) Stapf - replace: Cynodon convergens - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Crepidium fontinale D.L.Jones & M.A.Clem. - replace: Dienia fontinalis - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Crepidium marsupichilum (Upton) Szlach. - replace: Dienia marsupichila - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Eurybiopsis macrorhiza DC. - replace: Minuria macrorhiza - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Pleurosorus rutifolius (R.Br.) Fee - replace: Asplenium subglandulosum - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Siemssenia capillaris Steetz - replace: Podolepis capillaris - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Tripogon loliiformis (F.Muell.) C.E.Hubb. - replace: Tripogonella loliiformis - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species -- find: Trophis scandens (Lour.) Hook. & Arn. subsp. scandens - replace: Malaisia scandens subsp. megacarpa - reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Subspecies - find: Abelmoschus ficulneus (L.) Wight & Arn. ex Wight replace: Abelmoschus ficulneus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abelmoschus manihot (L.) Medik. replace: Abelmoschus manihot reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abelmoschus moschatus Medik. subsp. tuberosus (Span.) Borss.Waalk. replace: Abelmoschus moschatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abrodictyum obscurum (Blume) Ebihara & K.Iwats. replace: Abrodictyum obscurum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abrus precatorius L. subsp. precatorius replace: Abrus precatorius subsp. precatorius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Abutilon cryptopetalum (F.Muell.) F.Muell. ex Benth. replace: Abutilon cryptopetalum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon leucopetalum (F.Muell.) F.Muell. ex Benth. replace: Abutilon leucopetalum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon otocarpum F.Muell. replace: Abutilon otocarpum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia abbreviata Maslin replace: Acacia abbreviata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia abrupta Maiden & Blakely replace: Acacia abrupta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia acradenia F.Muell. replace: Acacia acradenia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia adsurgens Maiden & Blakely replace: Acacia adsurgens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia alleniana Maiden replace: Acacia alleniana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia amanda G.J.Leach replace: Acacia amanda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ammobia Maconochie replace: Acacia ammobia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ancistrocarpa Maiden & Blakely replace: Acacia ancistrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia aptaneura Maslin & J.E.Reid replace: Acacia aptaneura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia argyraea Tindale replace: Acacia argyraea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia asperulacea F.Muell. replace: Acacia asperulacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia auriculiformis A.Cunn. ex Benth. replace: Acacia auriculiformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ayersiana Maconochie replace: Acacia ayersiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia bivenosa DC. replace: Acacia bivenosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia brockii Tindale & Kodela replace: Acacia brockii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cataractae Tindale & Kodela replace: Acacia cataractae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia colei Maslin & L.Thomps. replace: Acacia colei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia conjunctifolia F.Muell. replace: Acacia conjunctifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia conspersa F.Muell. replace: Acacia conspersa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cowleana Tate replace: Acacia cowleana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cuthbertsonii Luehm. subsp. cuthbertsonii replace: Acacia cuthbertsonii subsp. cuthbertsonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia cyperophylla F.Muell. ex Benth. var. cyperophylla replace: Acacia cyperophylla var. cyperophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia desmondii Maslin replace: Acacia desmondii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia dictyophleba F.Muell. replace: Acacia dictyophleba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia difficilis Maiden replace: Acacia difficilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia dimidiata Benth. replace: Acacia dimidiata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia dolichophylla Maslin replace: Acacia dolichophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia dunnii (Maiden) Turrill replace: Acacia dunnii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia estrophiolata F.Muell. replace: Acacia estrophiolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia froggattii Maiden replace: Acacia froggattii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia georginae F.M.Bailey replace: Acacia georginae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia gonocarpa F.Muell. replace: Acacia gonocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia hammondii Maiden replace: Acacia hammondii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia hemignosta F.Muell. replace: Acacia hemignosta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia hilliana Maiden replace: Acacia hilliana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia holosericea A.Cunn. ex G.Don replace: Acacia holosericea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia humifusa A.Cunn. ex Benth. replace: Acacia humifusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia inaequilatera Domin replace: Acacia inaequilatera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia jasperensis Maconochie replace: Acacia jasperensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia kelleri F.Muell. replace: Acacia kelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia kempeana F.Muell. replace: Acacia kempeana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia laccata Pedley replace: Acacia laccata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia lamprocarpa O.Schwarz replace: Acacia lamprocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia latescens Benth. replace: Acacia latescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia latzii Maslin replace: Acacia latzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia leptocarpa A.Cunn. ex Benth replace: Acacia leptocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia leptophleba F.Muell. replace: Acacia leptophleba reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ligulata A.Cunn. ex Benth. replace: Acacia ligulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia linarioides Benth. replace: Acacia linarioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia lycopodiifolia A.Cunn. ex Hook. replace: Acacia lycopodiifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia lysiphloia F.Muell. replace: Acacia lysiphloia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia macdonnellensis Maconochie subsp. macdonnellensis replace: Acacia macdonnellensis subsp. macdonnellensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia maconochieana Pedley replace: Acacia maconochieana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia maitlandii F.Muell. replace: Acacia maitlandii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mangium Willd. replace: Acacia mangium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia megalantha F.Muell. replace: Acacia megalantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia melleodora Pedley replace: Acacia melleodora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mimula Pedley replace: Acacia mimula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia minyura Randell replace: Acacia minyura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia monticola J.M.Black replace: Acacia monticola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mountfordiae Specht replace: Acacia mountfordiae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia multisiliqua (Benth.) Maconochie replace: Acacia multisiliqua reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia multistipulosa Tindale & Bedward replace: Acacia multistipulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia murrayana F.Muell. ex Benth. replace: Acacia murrayana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia neurocarpa A.Cunn. ex Hook. replace: Acacia neurocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia nuperrima Baker f. replace: Acacia nuperrima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia oligoneura F.Muell. replace: Acacia oligoneura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia oncinocarpa Benth. replace: Acacia oncinocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia oswaldii F.Muell. replace: Acacia oswaldii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia pachyacra Maiden & Blakely replace: Acacia pachyacra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia paraneura Randell replace: Acacia paraneura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia pellita O.Schwarz replace: Acacia pellita reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia peuce F.Muell. replace: Acacia peuce reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia pickardii Tindale replace: Acacia pickardii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia platycarpa F.Muell. replace: Acacia platycarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia praelongata F.Muell. replace: Acacia praelongata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia praetermissa Tindale replace: Acacia praetermissa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia prainii Maiden replace: Acacia prainii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia producta Tindale replace: Acacia producta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia pruinocarpa Tindale replace: Acacia pruinocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ramulosa W.Fitzg. var. ramulosa replace: Acacia ramulosa var. ramulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia retivenea F.Muell. subsp. retivenea replace: Acacia retivenea subsp. retivenea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia rhodophloia Maslin replace: Acacia rhodophloia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia richardsii Maslin replace: Acacia richardsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia rigens A.Cunn. ex G.Don replace: Acacia rigens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sabulosa Maslin replace: Acacia sabulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia salicina Lindl. replace: Acacia salicina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia scopulorum Pedley replace: Acacia scopulorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sericoflora Pedley replace: Acacia sericoflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sericophylla F.Muell. replace: Acacia sericophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia shirleyi Maiden replace: Acacia shirleyi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sibirica S.Moore replace: Acacia sibirica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia simsii A.Cunn. ex Benth. replace: Acacia simsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Bradshaw (B.Wirf 1484) Cowie & M.D.Barrett replace: Acacia sp. [Acacia sp. Bradshaw (B.Wirf 1484) Cowie & M.D.Barrett; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2023-06-18) taxonomic_resolution: genus +- find: Acacia sp. holey trunk (P.K.Latz 12458) + replace: Acacia sp. Mulga Holey Trunk (P.K.Latz 12458) + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Acacia spondylophylla F.Muell. replace: Acacia spondylophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia stipuligera F.Muell. replace: Acacia stipuligera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia strongylophylla F.Muell. replace: Acacia strongylophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sublanata Benth. replace: Acacia sublanata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia subternata F.Muell. replace: Acacia subternata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia tetragonophylla F.Muell. replace: Acacia tetragonophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia tolmerensis G.J.Leach replace: Acacia tolmerensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia torulosa Benth. replace: Acacia torulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia translucens A.Cunn. ex Hook. replace: Acacia translucens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia umbellata A.Cunn. ex Benth. replace: Acacia umbellata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia undoolyana G.J.Leach replace: Acacia undoolyana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia validinervia Maiden & Blakely replace: Acacia validinervia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia wiseana C.A.Gardner replace: Acacia wiseana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia yirrkallensis Specht replace: Acacia yirrkallensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acanthospermum hispidum DC. replace: Acanthospermum hispidum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Achyranthes aspera L. replace: Achyranthes aspera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acrostichum aureum L. replace: Acrostichum aureum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acrostichum speciosum Willd. replace: Acrostichum speciosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinobole uliginosum (A.Gray) H.Eichler replace: Actinobole uliginosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. sandstone (P.K.Latz 7686) NT Herbarium replace: Actinoschoenus sp. sandstone (P.K.Latz 7686) reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinostachys digitata (L.) Wall. ex Reed replace: Actinostachys digitata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adansonia gregorii F.Muell. replace: Adansonia gregorii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthera pavonina L. replace: Adenanthera pavonina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenia heterophylla (Blume) Koord. subsp. australis (R.Br. ex DC.) W.J.de Wilde replace: Adenia heterophylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenostemma lavenia (L.) Kuntze replace: Adenostemma lavenia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenostemma lavenia (L.) Kuntze var. lanceolatum (Miq.) Koster replace: Adenostemma lavenia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adiantum hispidulum Sw. var. hispidulum replace: Adiantum hispidulum var. hispidulum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Adiantum philippense L. replace: Adiantum philippense reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adriana tomentosa Gaudich. var. hookeri (F.Muell.) C.L.Gross & M.A.Whalen replace: Adriana tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aenictophyton anomalum (F.Muell.) I.Thomps. replace: Aenictophyton anomalum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aenictophyton reconditum A.T.Lee replace: Aenictophyton reconditum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aeschynomene indica L. replace: Aeschynomene indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ageratum conyzoides L. replace: Ageratum conyzoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aglaia brownii Pannell replace: Aglaia brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aglaia sapindina (F.Muell.) Harms replace: Aglaia sapindina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia racemosa (Cav.) Tirveng. replace: Aidia racemosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia lebbeck (L.) Benth. replace: Albizia lebbeck reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia procera Benth. replace: Albizia procera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon kimberleyanus S.T.Reynolds replace: Alectryon kimberleyanus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon oleifolius (Desf.) S.T.Reynolds subsp. elongatus S.T.Reynolds replace: Alectryon oleifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon tropicus (S.T.Reynolds) S.T.Reynolds replace: Alectryon tropicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina decaisneana (F.Muell.) L.A.S.Johnson replace: Allocasuarina decaisneana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allophylus cobbe (L.) Raeusch. replace: Allophylus cobbe reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allosyncarpia ternata S.T.Blake replace: Allosyncarpia ternata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alloteropsis semialata (R.Br.) Hitchc. replace: Alloteropsis semialata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia excelsa (A.Cunn. ex Fenzl) Reissek ex Benth. replace: Alphitonia excelsa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia actinophylla (A.Cunn.) K.Schum. replace: Alstonia actinophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia spectabilis R.Br. subsp. ophioxyloides (F.Muell.) P.I.Forst. replace: Alstonia spectabilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera angustifolia R.Br. replace: Alternanthera angustifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera nodiflora R.Br. replace: Alternanthera nodiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aluta maisonneuvei (F.Muell.) Rye & Trudgen subsp. maisonneuvei replace: Aluta maisonneuvei subsp. maisonneuvei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alyogyne pinoniana (Gaudich.) Fryxell replace: Alyogyne pinoniana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alysicarpus muelleri Schindl. replace: Alysicarpus muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alysicarpus ovalifolius (Schumach.) Leonard replace: Alysicarpus ovalifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alysicarpus schomburgkii Schindl. replace: Alysicarpus schomburgkii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alysicarpus vaginalis (L.) A.DC. replace: Alysicarpus vaginalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyxia spicata R.Br. replace: Alyxia spicata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyxia tropica (P.I.Forst.) D.J.Middleton replace: Alyxia tropica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus centralis J.Palmer & Mowatt replace: Amaranthus centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus cochleitepalus Domin replace: Amaranthus cochleitepalus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus interruptus R.Br. replace: Amaranthus interruptus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus mitchellii Benth. replace: Amaranthus mitchellii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ammannia baccifera L. replace: Ammannia baccifera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ammannia multiflora Roxb. replace: Ammannia multiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amorphophallus galbra F.M.Bailey replace: Amorphophallus galbra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amorphophallus paeoniifolius (Dennst.) Nicolson replace: Amorphophallus paeoniifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ampelocissus acetosa (F.Muell.) Planch. replace: Ampelocissus acetosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ampelocissus frutescens Jackes replace: Ampelocissus frutescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ampelopteris prolifera (Retz.) Copel. replace: Ampelopteris prolifera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema benthamii (Blakely) Danser replace: Amyema benthamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema bifurcata (Benth.) Tiegh. replace: Amyema bifurcata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema gibberula (Tate) Danser var. gibberula replace: Amyema gibberula var. gibberula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Amyema hilliana (Blakely) Danser replace: Amyema hilliana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema maidenii (Blakely) Barlow subsp. maidenii replace: Amyema maidenii subsp. maidenii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Amyema miquelii (Lam. ex Miq.) Tiegh. replace: Amyema miquelii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema miraculosa (Miq.) Tiegh. subsp. boormanii (Blakely) Barlow replace: Amyema miraculosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema preissii (Miq.) Tiegh. replace: Amyema preissii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema quandang (Lindl.) Tiegh. var. quandang replace: Amyema quandang var. quandang reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Amyema sanguinea (F.Muell.) Danser var. sanguinea replace: Amyema sanguinea var. sanguinea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Amyema subcapitata Barlow replace: Amyema subcapitata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anacampseros australiana J.M.Black replace: Anacampseros australiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Androcalva loxophylla (F.Muell.) C.F.Wilkin & Whitlock replace: Androcalva loxophylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aneilema siliculosum R.Br. replace: Aneilema siliculosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anemocarpa saxatilis (Paul G.Wilson) Paul G.Wilson replace: Anemocarpa saxatilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Angiopteris evecta (G.Forst.) Hoffm. replace: Angiopteris evecta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aniseia martinicensis (Jacq.) Choisy replace: Aniseia martinicensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthobolus filifolius R.Br. replace: Anthobolus filifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthobolus leptomerioides F.Muell. replace: Anthobolus leptomerioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antiaris toxicaria Lesch. subsp. macrophylla (R.Br.) C.C.Berg replace: Antiaris toxicaria reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antidesma ghesaembilla Gaertn. replace: Antidesma ghesaembilla reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antidesma parvifolium Thwaites & F.Muell. replace: Antidesma parvifolium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arenga microcarpa Becc. replace: Arenga microcarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida arida B.K.Simon replace: Aristida arida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida biglandulosa J.M.Black replace: Aristida biglandulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida capillifolia Henrard replace: Aristida capillifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida contorta F.Muell. replace: Aristida contorta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida dominii B.K.Simon replace: Aristida dominii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida exserta S.T.Blake replace: Aristida exserta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida holathera Domin var. holathera replace: Aristida holathera var. holathera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Aristida hygrometrica R.Br. replace: Aristida hygrometrica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida inaequiglumis Domin replace: Aristida inaequiglumis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida jerichoensis (Domin) Henrard var. subspinulifera Henrard replace: Aristida jerichoensis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida latifolia Domin replace: Aristida latifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida latzii B.K.Simon replace: Aristida latzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida nitidula (Henrard) S.T.Blake ex J.M.Black replace: Aristida nitidula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida obscura Henrard replace: Aristida obscura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida pruinosa Domin replace: Aristida pruinosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida strigosa (Henrard) S.T.Blake ex J.M.Black replace: Aristida strigosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida superpendens Domin replace: Aristida superpendens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristolochia holtzei F.Muell. replace: Aristolochia holtzei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristolochia indica L. replace: Aristolochia indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristolochia pubera R.Br. replace: Aristolochia pubera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arnhemia cryptantha Airy Shaw replace: Arnhemia cryptantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthrochilus byrnesii Blaxell replace: Arthrochilus byrnesii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthrochilus latipes D.L.Jones replace: Arthrochilus latipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthrostylis aphylla R.Br. replace: Arthrostylis aphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Artocarpus glaucus Blume replace: Artocarpus glaucus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arundinella nepalensis Trin. replace: Arundinella nepalensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arytera bifoliolata S.T.Reynolds replace: Arytera bifoliolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asparagus racemosus Willd replace: Asparagus racemosus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asplenium polyodon G.Forst. replace: Asplenium polyodon reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asteromyrtus magnifica (Specht) Craven replace: Asteromyrtus magnifica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrebla elymoides F.Muell. replace: Astrebla elymoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrebla lappacea (Lindl.) Domin replace: Astrebla lappacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrebla pectinata (Lindl.) F.Muell. ex Benth. replace: Astrebla pectinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrebla squarrosa C.E.Hubb. replace: Astrebla squarrosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atalaya hemiglauca (F.Muell.) F.Muell. ex Benth. replace: Atalaya hemiglauca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atalaya salicifolia (DC.) Blume replace: Atalaya salicifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex elachophylla F.Muell. replace: Atriplex elachophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex holocarpa F.Muell. replace: Atriplex holocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex nummularia Lindl. subsp. nummularia replace: Atriplex nummularia subsp. nummularia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia Lindl. subsp. omissa Aellen replace: Atriplex nummularia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex semibaccata R.Br. replace: Atriplex semibaccata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex stipitata Benth. replace: Atriplex stipitata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Auranticarpa melanosperma (F.Muell.) L.Cayzer, Crisp & I.Telford replace: Auranticarpa melanosperma reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa aquarii (Vickery, S.W.L.Jacobs & J.Everett) S.W.L.Jacobs & J.Everett replace: Austrostipa aquarii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa scabra (Lindl.) S.W.L.Jacobs & J.Everett subsp. scabra replace: Austrostipa scabra subsp. scabra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Azolla pinnata R.Br. replace: Azolla pinnata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bacopa floribunda (R.Br.) Wettst. replace: Bacopa floribunda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bambusa arnhemica F.Muell. replace: Bambusa arnhemica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia dentata L.f. replace: Banksia dentata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Barringtonia acutangula (L.) Gaertn. subsp. acutangula replace: Barringtonia acutangula subsp. acutangula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Barringtonia asiatica (L.) Kurz replace: Barringtonia asiatica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Basilicum polystachyon (L.) Moench replace: Basilicum polystachyon reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bauhinia binata Blanco replace: Bauhinia binata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bauhinia cunninghamii (Benth.) Benth. replace: Bauhinia cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bauhinia malabarica Roxb. replace: Bauhinia malabarica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bergia henshallii G.J.Leach replace: Bergia henshallii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bergia pedicellaris (F.Muell.) F.Muell. ex Benth. replace: Bergia pedicellaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bergia trimera Fisch. & C.A.Mey. replace: Bergia trimera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Berrya javanica (Turcz.) Burret replace: Berrya javanica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bidens bipinnata L. replace: Bidens bipinnata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bidens pilosa L. replace: Bidens pilosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blainvillea cunninghamii (DC.) Orchard replace: Blainvillea cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blechnum orientale L. replace: Blechnum orientale reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blennodia canescens R.Br. replace: Blennodia canescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blepharocarya depauperata Specht replace: Blepharocarya depauperata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blumea diffusa R.Br. ex Benth. replace: Blumea diffusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blumea tenella DC. replace: Blumea tenella reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia coccinea Mill. replace: Boerhavia coccinea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia dominii Meikle & Hewson replace: Boerhavia dominii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia paludosa (Domin) Meikle replace: Boerhavia paludosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia repleta Hewson replace: Boerhavia repleta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boerhavia schomburgkiana Oliv. replace: Boerhavia schomburgkiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bolbitis quoyana (Gaudich.) Ching replace: Bolbitis quoyana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bolboschoenus caldwellii (V.Cook.) Sojak replace: Bolboschoenus caldwellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bombax ceiba L. replace: Bombax ceiba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bonamia erecta R.W.Johnson replace: Bonamia erecta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bonamia pannosa (R.Br.) Hallier f. replace: Bonamia pannosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia amplectens Duretto replace: Boronia amplectens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia filicifolia A.Cunn. ex DC. replace: Boronia filicifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia lanceolata F.Muell. replace: Boronia lanceolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia lanuginosa Endl. replace: Boronia lanuginosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia tolerans Duretto replace: Boronia tolerans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia xanthastrum Duretto replace: Boronia xanthastrum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea bossiaeoides (A.Cunn. ex Benth.) Court replace: Bossiaea bossiaeoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bothriochloa ewartiana (Domin) C.E.Hubb. replace: Bothriochloa ewartiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Brachyachne convergens (F.Muell.) Stapf + replace: Cynodon convergens + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Brachychiton collinus Guymer replace: Brachychiton collinus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton diversifolius R.Br. subsp. diversifolius replace: Brachychiton diversifolius subsp. diversifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachychiton gregorii F.Muell. replace: Brachychiton gregorii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton megaphyllus Guymer replace: Brachychiton megaphyllus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton paradoxus Schott & Endl. replace: Brachychiton paradoxus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton spectabilis Guymer replace: Brachychiton spectabilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome blackii G.L.R.Davis replace: Brachyscome blackii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome ciliaris (Labill.) Less. var. lanuginosa (Steetz) Benth. replace: Brachyscome ciliaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome tesquorum J.M.Black replace: Brachyscome tesquorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica tournefortii Gouan replace: Brassica tournefortii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Breynia cernua (Poir.) Muell.Arg. replace: Breynia cernua reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bridelia tomentosa Blume replace: Bridelia tomentosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Briza maxima L. replace: Briza maxima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brucea javanica (L.) Merr. replace: Brucea javanica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia australis Sm. ex R.Br. replace: Brunonia australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunoniella australis (Cav.) Bremek. replace: Brunoniella australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buchanania arborescens (Blume) Blume replace: Buchanania arborescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buchanania obovata Engl. replace: Buchanania obovata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buchnera linearis R.Br. replace: Buchnera linearis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buchnera ramosissima R.Br. replace: Buchnera ramosissima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Buglossoides arvensis (L.) I.M.Johnst. replace: Buglossoides arvensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bulbine alata Baijnath replace: Bulbine alata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bulbostylis barbata (Rottb.) C.B.Clarke replace: Bulbostylis barbata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bursaria incana Lindl. replace: Bursaria incana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caesalpinia bonduc (L.) Roxb. replace: Caesalpinia bonduc reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus acutifolius (F.Muell.) Maesen replace: Cajanus acutifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus aromaticus Maesen replace: Cajanus aromaticus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus geminatus Pedley ex Maesen replace: Cajanus geminatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus sp. Elcho Island (J.R.Maconochie 2213) Cowie replace: Cajanus sp. [Cajanus sp. Elcho Island (J.R.Maconochie 2213) Cowie; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -2058,1234 +1974,1254 @@ taxonomic_updates: replace: Calandrinia balonensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia disperma J.M.Black replace: Calandrinia disperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia eremaea Ewart replace: Calandrinia eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia ptychosperma (F.Muell. ex Benth.) F.Muell. replace: Calandrinia ptychosperma reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia uniflora F.Muell. replace: Calandrinia uniflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callicarpa brevistyla Munir replace: Callicarpa brevistyla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callicarpa candicans (Burm.f.) Hochr. replace: Callicarpa candicans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callitris glaucophylla Joy Thomps. & L.A.S.Johnson replace: Callitris glaucophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callitris intratropica R.T.Baker & H.G.Sm. replace: Callitris intratropica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus knappii (F.Muell.) Ewart & Jean White replace: Calocephalus knappii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus platycephalus (F.Muell.) Benth. replace: Calocephalus platycephalus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum inophyllum L. replace: Calophyllum inophyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum sil Lauterb. replace: Calophyllum sil reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum soulattri Burm.f. replace: Calophyllum soulattri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calopogonium mucunoides Desv. replace: Calopogonium mucunoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis cymbacantha F.Muell. replace: Calotis cymbacantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis erinacea Steetz replace: Calotis erinacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis hispidula (F.Muell.) F.Muell. replace: Calotis hispidula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis latiuscula F.Muell.& Tate replace: Calotis latiuscula reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis plumulifera F.Muell. replace: Calotis plumulifera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis porphyroglossa F.Muell. ex Benth. replace: Calotis porphyroglossa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calotis squamigera C.T.White replace: Calotis squamigera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calycopeplus collinus P.I.Forst. replace: Calycopeplus collinus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix achaeta (F.Muell.) Benth. replace: Calytrix achaeta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix arborescens (F.Muell.) Benth. replace: Calytrix arborescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix brownii (Schauer) Craven replace: Calytrix brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix carinata Craven replace: Calytrix carinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix decussata Craven replace: Calytrix decussata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix exstipulata DC. replace: Calytrix exstipulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix inopinata Craven replace: Calytrix inopinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix megaphylla (F.Muell.) Benth. replace: Calytrix megaphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Camptacra gracilis (Benth.) Lander replace: Camptacra gracilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canarium australianum F.Muell. replace: Canarium australianum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canavalia cathartica Thouars replace: Canavalia cathartica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canavalia papuana Merr. & L.M.Perry replace: Canavalia papuana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canavalia rosea (Sw.) DC. replace: Canavalia rosea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cansjera leptostachya Benth. replace: Cansjera leptostachya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capillipedium parviflorum (R.Br.) Stapf replace: Capillipedium parviflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis jacobsii Hewson replace: Capparis jacobsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis lasiantha R.Br. ex DC. replace: Capparis lasiantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis loranthifolia Lindl. var. loranthifolia replace: Capparis loranthifolia var. loranthifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Capparis mitchellii Lindl. replace: Capparis mitchellii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis quiniflora DC. replace: Capparis quiniflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis sepiaria L. replace: Capparis sepiaria reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis spinosa L. subsp. nummularia (DC.) Fici replace: Capparis spinosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis umbonata Lindl. replace: Capparis umbonata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capsicum annuum L. replace: Capsicum annuum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carallia brachiata (Lour.) Merr. replace: Carallia brachiata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardiospermum halicacabum L. var. halicacabum replace: Cardiospermum halicacabum var. halicacabum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Carissa lanceolata R.Br. replace: Carissa lanceolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpentaria acuminata (H.Wendl. & Drude) Becc. replace: Carpentaria acuminata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema spicatum R.Br. replace: Cartonema spicatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema trigonospermum C.B.Clarke replace: Cartonema trigonospermum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha candida (J.Z.Weber) J.Z.Weber [FoA] replace: Cassytha candida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha capillaris Meisn. replace: Cassytha capillaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha filiformis L. replace: Cassytha filiformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cathormion umbellatum (Vahl) Kosterm. subsp. moniliforme (DC.) Brummitt replace: Cathormion umbellatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cayratia acris (F.Muell.) Domin replace: Cayratia acris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cayratia maritima Jackes replace: Cayratia maritima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cayratia trifolia (L.) Domin replace: Cayratia trifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Celtis paniculata (Endl.) Planch. replace: Celtis paniculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Celtis philippensis Blanco replace: Celtis philippensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cenchrus ciliaris L. replace: Cenchrus ciliaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cenchrus echinatus L. replace: Cenchrus echinatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cenchrus setiger Vahl replace: Cenchrus setiger reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centipeda thespidioides F.Muell. replace: Centipeda thespidioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centrolepis exserta (R.Br.) Poir. replace: Centrolepis exserta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cerastium glomeratum Thuill. replace: Cerastium glomeratum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaecrista absus (L.) H.S.Irwin & Barneby var. absus replace: Chamaecrista absus var. absus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Chamaecrista mimosoides (L.) Greene replace: Chamaecrista mimosoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaecrista nomame (Siebold) H.Ohashi replace: Chamaecrista nomame reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes brownii (Kuhn) Domin replace: Cheilanthes brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes caudata R.Br. replace: Cheilanthes caudata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes fragillima F.Muell. replace: Cheilanthes fragillima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes nitida (R.Br.) P.S.Green replace: Cheilanthes nitida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes praetermissa D.L.Jones replace: Cheilanthes praetermissa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes sieberi Kunze subsp. pseudovellea H.M.Quirk & T.C.Chambers replace: Cheilanthes sieberi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheilanthes sieberi Kunze subsp. sieberi replace: Cheilanthes sieberi subsp. sieberi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes tenuifolia (Burm.f.) Sw. replace: Cheilanthes tenuifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium auricomum Lindl. replace: Chenopodium auricomum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium nitrariaceum (F.Muell.) Benth. replace: Chenopodium nitrariaceum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloschista phyllorhiza (F.Muell.) Schltr. replace: Chiloschista phyllorhiza reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionachne cyathopoda (F.Muell.) F.Muell. ex Benth. replace: Chionachne cyathopoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chloris pectinata Benth. replace: Chloris pectinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chloris virgata Sw. replace: Chloris virgata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chlorophytum laxum R.Br. replace: Chlorophytum laxum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Choriceras tricorne (Benth.) Airy Shaw replace: Choriceras tricorne reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Christella dentata (Forssk.) Brownsey & Jermy replace: Christella dentata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chromolaena odorata (L.) R.M.King & H.Rob. replace: Chromolaena odorata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysocephalum apiculatum (Labill.) Steetz replace: Chrysocephalum apiculatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysocephalum eremaeum (Haegi) Anderb. replace: Chrysocephalum eremaeum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysocephalum pterochaetum (F.Muell.) Paul G.Wilson replace: Chrysocephalum pterochaetum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon fallax S.T.Blake replace: Chrysopogon fallax reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon latifolius S.T.Blake replace: Chrysopogon latifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon oliganthus Veldkamp replace: Chrysopogon oliganthus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon pallidus (R.Br.) Trin. ex Steud. replace: Chrysopogon pallidus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chthonocephalus pseudevax Steetz replace: Chthonocephalus pseudevax reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus adnata Roxb. replace: Cissus adnata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cissus reniformis Domin replace: Cissus reniformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citrullus amarus Schrad. replace: Citrullus amarus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citrullus colocynthis (L.) Schrad. replace: Citrullus colocynthis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citrus gracilis Mabb. replace: Citrus gracilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Claoxylon hillii Benth. replace: Claoxylon hillii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clematis pickeringii A.Gray replace: Clematis pickeringii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cleome cleomoides (F.Muell.) H.H.Iltis replace: Cleome cleomoides reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cleome viscosa L. replace: Cleome viscosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum costatum R.Br. replace: Clerodendrum costatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum R.Br. var. angustifolium Moldenke replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum R.Br. var. attenuatum (R.Br.) Moldenke replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum R.Br. var. coriaceum (R.Br.) Moldenke replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum R.Br. var. ovatum (R.Br.) Domin replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum inerme (L.) Gaertn. replace: Clerodendrum inerme reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum tatei (F.Muell.) Munir replace: Clerodendrum tatei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum tomentosum (Vent.) R.Br. var. tomentosum replace: Clerodendrum tomentosum var. tomentosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Codonocarpus cotinifolius (Desf.) F.Muell. replace: Codonocarpus cotinifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coelospermum reticulatum (F.Muell.) Benth. replace: Coelospermum reticulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Colocasia esculenta (L.) Schott replace: Colocasia esculenta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Colubrina asiatica (L.) Brongn. replace: Colubrina asiatica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Comesperma aphyllum R.Br. ex Benth. replace: Comesperma aphyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Comesperma secundum Banks ex DC. replace: Comesperma secundum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Comesperma viscidulum F.Muell. replace: Comesperma viscidulum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commelina ensifolia R.Br. replace: Commelina ensifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commelina tricarinata Stanley replace: Commelina tricarinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia magniflora (F.Muell.) F.Muell. replace: Commersonia magniflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus clementii Domin replace: Convolvulus clementii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus aestuans L. replace: Corchorus aestuans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus capsularis L. replace: Corchorus capsularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus macropterus G.J.Leach & Cheek replace: Corchorus macropterus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus pumilio R.Br. ex Benth. replace: Corchorus pumilio reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sidoides F.Muell. subsp. sidoides replace: Corchorus sidoides subsp. sidoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corchorus walcottii F.Muell. replace: Corchorus walcottii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cordia dichotoma G.Forst. replace: Cordia dichotoma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cordia subcordata Lam. replace: Cordia subcordata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cordyline cannifolia R.Br. replace: Cordyline cannifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia abbreviata (Blakely & Jacobs) K.D.Hill & L.A.S.Johnson replace: Corymbia abbreviata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia aparrerinja (Blakely) K.D.Hill & L.A.S.Johnson replace: Corymbia aparrerinja reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia arnhemensis (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson replace: Corymbia arnhemensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia bella K.D.Hill & L.A.S.Johnson replace: Corymbia bella reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia bleeseri (Blakely) K.D.Hill & L.A.S.Johnson replace: Corymbia bleeseri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia chippendalei (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson replace: Corymbia chippendalei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia confertiflora (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia confertiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia deserticola (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson subsp. mesogeotica K.D.Hill & L.A.S.Johnson replace: Corymbia deserticola reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia dichromophloia (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia dichromophloia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia eremaea (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson subsp. eremaea replace: Corymbia eremaea subsp. eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia eremaea (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson subsp. oligocarpa (Blakely & Jacobs) K.D.Hill & L.A.S.Johnson replace: Corymbia eremaea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia flavescens K.D.Hill & L.A.S.Johnson replace: Corymbia flavescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia foelscheana (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia foelscheana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia kombolgiensis (Brooker & Dunlop) K.D.Hill & L.A.S.Johnson replace: Corymbia kombolgiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia latifolia (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia latifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia opaca (D.J.Carr & S.G.M.Carr) K.D.Hill & L.A.S.Johnson replace: Corymbia opaca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia polycarpa (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia polycarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia polysciada (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia polysciada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia porrecta (S.T.Blake) K.D.Hill & L.A.S.Johnson replace: Corymbia porrecta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia sphaerica K.D.Hill & L.A.S.Johnson replace: Corymbia sphaerica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia terminalis (F.Muell.) K.D.Hill & L.A.S.Johnson replace: Corymbia terminalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corynotheca divaricata (R.J.F.Hend.) R.L.Barrett & T.Macfarlane replace: Corynotheca divaricata reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corynotheca lateriflora (R.Br.) F.Muell. ex Benth. replace: Corynotheca lateriflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corynotheca licrota R.J.F.Hend. replace: Corynotheca licrota reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corypha utan Lam. replace: Corypha utan reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crassula colorata (Nees) Ostenf. var. acuminata (Reader) Toelken replace: Crassula colorata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cratystylis centralis Albr. & Paul G.Wilson replace: Cratystylis centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cremnothamnus thomsonii (F.Muell.) Puttock replace: Cremnothamnus thomsonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Crepidium fontinale D.L.Jones & M.A.Clem. + replace: Dienia fontinalis + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species +- find: Crepidium marsupichilum (Upton) Szlach. + replace: Dienia marsupichila + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Crinum arenarium Herb. replace: Crinum arenarium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crinum flaccidum Herb. replace: Crinum flaccidum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria brevis Domin replace: Crotalaria brevis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Crotalaria crassipes Hook. + replace: Crotalaria novae-hollandiae subsp. crassipes + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies - find: Crotalaria crispata F.Muell. ex Benth. replace: Crotalaria crispata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria eremaea F.Muell. subsp. strehlowii (E.Pritz.) A.T.Lee replace: Crotalaria eremaea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria goreensis Guill. & Perr. replace: Crotalaria goreensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria retusa L. replace: Crotalaria retusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton aridus P.I.Forst. replace: Croton aridus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton arnhemicus Muell.Arg. replace: Croton arnhemicus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton byrnesii Airy Shaw replace: Croton byrnesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton habrophyllus Airy Shaw replace: Croton habrophyllus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton schultzii Benth. replace: Croton schultzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton tomentellus F.Muell. replace: Croton tomentellus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya cunninghamii Meisn. replace: Cryptocarya cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya exfoliata Allen replace: Cryptocarya exfoliata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya hypospodia F.Muell. replace: Cryptocarya hypospodia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis umbellatus I.Telford replace: Cucumis umbellatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cullen australasicum (Schtdl.) J.W.Grimes replace: Cullen australasicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cullen cinereum (Lindl.) J.W.Grimes replace: Cullen cinereum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cupaniopsis anacardioides (A.Rich.) Radlk. replace: Cupaniopsis anacardioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cuphonotus andraeanus (F.Muell.) E.A.Shaw replace: Cuphonotus andraeanus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Curcuma australasica Hook.f. replace: Curcuma australasica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanotis axillaris (L.) D.Don replace: Cyanotis axillaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanthillium cinereum (L.) H.Rob. replace: Cyanthillium cinereum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanthillium cinereum (L.) H.Rob. var. linifolium (Blume) Karthik. & Moorthy replace: Cyanthillium cinereum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanthillium patulum (Aiton) H.Rob. replace: Cyanthillium patulum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyclosorus interruptus (Willd.) Ching replace: Cyclosorus interruptus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyclospermum leptophyllum (Pers.) Sprague ex Britton & P.Wilson replace: Cyclospermum leptophyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbidium canaliculatum R.Br. replace: Cymbidium canaliculatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbopogon ambiguus A.Camus replace: Cymbopogon ambiguus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbopogon bombycinus (R.Br.) Domin replace: Cymbopogon bombycinus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbopogon obtectus S.T.Blake replace: Cymbopogon obtectus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cymbopogon procerus (R.Br.) Domin replace: Cymbopogon procerus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum brevipedicellatum (P.I.Forst.) Liede & Meve replace: Cynanchum brevipedicellatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum floribundum R.Br. replace: Cynanchum floribundum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum leptolepis (Benth.) Domin replace: Cynanchum leptolepis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum viminale (L.) Bassi subsp. australe (R.Br.) Meve & Liede replace: Cynanchum viminale reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynodon dactylon (L.) Pers. replace: Cynodon dactylon reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynodon radiatus Roth ex Roem. & Schult. replace: Cynodon radiatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynoglossum australe R.Br. replace: Cynoglossum australe reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bifax C.B.Clarke replace: Cyperus bifax reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus blakeanus K.L.Wilson replace: Cyperus blakeanus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bulbosus Vahl replace: Cyperus bulbosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus castaneus Willd replace: Cyperus castaneus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus centralis K.L.Wilson replace: Cyperus centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus cunninghamii (C.B.Clarke) C.A.Gardner subsp. cunninghamii replace: Cyperus cunninghamii subsp. cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cyperus cuspidatus Kunth replace: Cyperus cuspidatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus gymnocaulos Steudel replace: Cyperus gymnocaulos reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus holoschoenus R.Br. replace: Cyperus holoschoenus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus iria L. replace: Cyperus iria reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus laxus Griseb. replace: Cyperus laxus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus platystylis R.Br. replace: Cyperus platystylis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus pulchellus R.Br. replace: Cyperus pulchellus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus sporobolus R.Br. replace: Cyperus sporobolus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus squarrosus L. replace: Cyperus squarrosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus vaginatus R.Br. replace: Cyperus vaginatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus victoriensis C.B.Clarke replace: Cyperus victoriensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus zollingeri Steud. replace: Cyperus zollingeri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dactyloctenium radulans (R.Br.) P.Beauv. replace: Dactyloctenium radulans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera candicans F.Muell. replace: Dampiera candicans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera cinerea Ewart & O.B.Davies replace: Dampiera cinerea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera conospermoides W.Fitzg. replace: Dampiera conospermoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera dentata Rajput replace: Dampiera dentata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dapsilanthus spathaceus (R.Br.) B.G.Briggs & L.A.S.Johnson replace: Dapsilanthus spathaceus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia arthropoda F.Muell. replace: Daviesia arthropoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia eremaea Crisp replace: Daviesia eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia reclinata A.Cunn. ex Benth. replace: Daviesia reclinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrobium dicuphum F.Muell. replace: Dendrobium dicuphum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrobium paludicola Schltr. replace: Dendrobium paludicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrophthoe odontocalyx (F.Muell. ex Benth.) Tiegh. replace: Dendrophthoe odontocalyx reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia cunninghamii (Hook.) M.P.Simmons replace: Denhamia cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia ferdinandi (Jessup) M.P.Simmons replace: Denhamia ferdinandi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia obscura (A.Rich.) Meisn. ex Walp. replace: Denhamia obscura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derris trifoliata Lour. replace: Derris trifoliata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium brownii Schindl. replace: Desmodium brownii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium gangeticum (L.) DC. replace: Desmodium gangeticum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium glareosum Pedley replace: Desmodium glareosum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium heterocarpon (L.) DC. var. strigosum (Meeuwen) H.Ohashi replace: Desmodium heterocarpon reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmodium muelleri Benth. replace: Desmodium muelleri reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Desmodium pycnotrichum Pedley + replace: Grona pycnotricha + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Desmodium trichostachyum Benth. replace: Desmodium trichostachyum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Desmodium velutinum (Willd.) DC. + replace: Polhillides velutina + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Desmos wardianus (F.M.Bailey) Jessup replace: Desmos wardianus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella odorata Blume replace: Dianella odorata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium monoicum F.Muell. replace: Dicarpidium monoicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Arnhem Land (L.A.Craven 2494) Cowie replace: Dicarpidium sp. Arnhem Land (L.A.Craven 2494) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Nabarlek (R.Hinz 561) Cowie replace: Dicarpidium sp. [Dicarpidium sp. Nabarlek (R.Hinz 561) Cowie; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3295,7 +3231,7 @@ taxonomic_updates: replace: Dicarpidium sp. Purnululu (K.A.Menkhorst 766) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Ubirr (N.Byrnes 2821) Cowie replace: Dicarpidium sp. [Dicarpidium sp. Ubirr (N.Byrnes 2821) Cowie; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3305,1759 +3241,1767 @@ taxonomic_updates: replace: Dichanthium annulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichanthium sericeum (R.Br.) A.Camus subsp. humilius (J.M.Black) B.K.Simon replace: Dichanthium sericeum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichanthium sericeum (R.Br.) A.Camus subsp. sericeum replace: Dichanthium sericeum subsp. sericeum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dichapetalum timoriense (DC.) Boerl. replace: Dichapetalum timoriense reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichrostachys spicata (F.Muell.) Domin replace: Dichrostachys spicata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicliptera armata F.Muell. replace: Dicliptera armata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicliptera ciliata Decne. replace: Dicliptera ciliata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicliptera spicata Decne. replace: Dicliptera spicata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicranopteris linearis (Burm.f.) J.Underw. var. linearis replace: Dicranopteris linearis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis beveridgei F.Muell. replace: Dicrastylis beveridgei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis doranii F.Muell. replace: Dicrastylis doranii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis exsuccosa (F.Muell.) Druce replace: Dicrastylis exsuccosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis gilesii F.Muell. replace: Dicrastylis gilesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Didymoplexis pallens Griff. replace: Didymoplexis pallens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dienia montana (Blume) M.A.Clem. & D.L.Jones replace: Dienia montana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria ammophila Hughes replace: Digitaria ammophila reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria bicornis (Lam.) Roem. & Schult. replace: Digitaria bicornis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria brownii (Roem. & Schult.) Hughes replace: Digitaria brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria ciliaris (Retz.) Koeler replace: Digitaria ciliaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria ctenantha (F.Muell.) Hughes replace: Digitaria ctenantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria divaricatissima (R.Br.) Hughes var. divaricatissima replace: Digitaria divaricatissima var. divaricatissima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Digitaria gibbosa (R.Br.) P.Beauv. replace: Digitaria gibbosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria longiflora (Retz.) Pers. replace: Digitaria longiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillenia alata (R.Br. ex DC.) Martelli replace: Dillenia alata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dinebra neesii (Thwaites) P.M.Peterson & N.Snow replace: Dinebra neesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dioscorea alata L. replace: Dioscorea alata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dioscorea bulbifera L. replace: Dioscorea bulbifera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dioscorea transversa R.Br. replace: Dioscorea transversa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros calycantha O.Schwarz replace: Diospyros calycantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros compacta (R.Br.) Kosterm. replace: Diospyros compacta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros humilis (R.Br.) F.Muell. replace: Diospyros humilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros littorea (R.Br.) Kosterm. replace: Diospyros littorea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros maritima Blume replace: Diospyros maritima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros rugosula R.Br. replace: Diospyros rugosula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplachne fusca (L.) P.Beauv. ex Roem. & Schult. subsp. muelleri (Benth.) P.M.Peterson & N.Snow replace: Diplachne fusca reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplatia grandibractea (F.Muell.) Tiegh. replace: Diplatia grandibractea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplocyclos palmatus (L.) C.Jeffrey replace: Diplocyclos palmatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dipodium stenocheilum O.Schwarz replace: Dipodium stenocheilum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dipteracanthus australasicus F.Muell. subsp. australasicus replace: Dipteracanthus australasicus subsp. australasicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Distimake quinatus (R.Br.) A.R.Simões & Staples replace: Distimake quinatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea arnhemica (S.T.Reynolds) M.Harrington replace: Dodonaea arnhemica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea coriacea (Ewart & O.B.Davies) McGill. replace: Dodonaea coriacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea lanceolata F.Muell. var. lanceolata replace: Dodonaea lanceolata var. lanceolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea microzyga F.Muell. var. microzyga replace: Dodonaea microzyga var. microzyga reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea platyptera F.Muell. replace: Dodonaea platyptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea polyzyga F.Muell. replace: Dodonaea polyzyga reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea stenophylla F.Muell. replace: Dodonaea stenophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa Jacq. subsp. angustissima (DC.) J.G.West replace: Dodonaea viscosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa Jacq. subsp. mucronata J.G.West replace: Dodonaea viscosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dolichandrone filiformis (DC.) F.Muell. replace: Dolichandrone filiformis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dolichandrone heterophylla (R.Br.) F.Muell. replace: Dolichandrone heterophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dracaena angustifolia (Medik.) Roxb. replace: Dracaena angustifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera finlaysoniana Wall. ex Arn. replace: Drosera finlaysoniana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera lanata Kondo replace: Drosera lanata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera petiolaris R.Br. ex DC. replace: Drosera petiolaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera subtilis N.G.Marchant replace: Drosera subtilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita borealis Duretto replace: Drummondita borealis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drynaria quercifolia (L.) J.J.Sm. replace: Drynaria quercifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drypetes deplanchei (Brongn. & Griseb.) Merr. replace: Drypetes deplanchei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Duboisia hopwoodii (F.Muell.) F.Muell. replace: Duboisia hopwoodii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Duma florulenta (Meisn.) T.M.Schust. replace: Duma florulenta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dunbaria singuliflora F.Muell. replace: Dunbaria singuliflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysoxylum acutangulum Miq. subsp. foveolatum (Radlk.) Mabb. replace: Dysoxylum acutangulum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysoxylum latifolium Benth. replace: Dysoxylum latifolium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania cristata (F.Muell.) Mosyakin & Clemants replace: Dysphania cristata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania kalpari Paul G.Wilson replace: Dysphania kalpari reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania melanocarpa (J.M.Black) Mosyakin & Clemants replace: Dysphania melanocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania simulans F.Muell. & Tate replace: Dysphania simulans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dysphania truncata (Paul G.Wilson) Mosyakin & Clemants replace: Dysphania truncata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinochloa colona (L.) Link replace: Echinochloa colona reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ectrosia leporina R.Br. replace: Ectrosia leporina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Einadia nutans (R.Br.) A.J.Scott subsp. eremaea Paul G.Wilson replace: Einadia nutans reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Einadia nutans (R.Br.) A.J.Scott subsp. nutans replace: Einadia nutans subsp. nutans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Elaeocarpus angustifolius Blume replace: Elaeocarpus angustifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus arnhemicus F.Muell. replace: Elaeocarpus arnhemicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus culminicola Warb. replace: Elaeocarpus culminicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus miegei Weibe replace: Elaeocarpus miegei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeodendron melanocarpum F.Muell. replace: Elaeodendron melanocarpum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elatine macrocalyx Albr. replace: Elatine macrocalyx reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis dulcis (Burm.f. ) Trin. ex Hensch. replace: Eleocharis dulcis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis pallens S.T.Blake replace: Eleocharis pallens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis papillosa Latz replace: Eleocharis papillosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sphacelata R.Br. replace: Eleocharis sphacelata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis spiralis (Rottb.) Roem. & Schult. replace: Eleocharis spiralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elephantopus scaber L. replace: Elephantopus scaber reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleutheranthera ruderalis (Sw.) Sch.Bip. replace: Eleutheranthera ruderalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elytrophorus spicatus (Willd.) A.Camus replace: Elytrophorus spicatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Embelia curvinervia S.T.Reynolds replace: Embelia curvinervia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emilia sonchifolia (L.) DC. replace: Emilia sonchifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emmenosperma cunninghamii Benth. replace: Emmenosperma cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enchylaena tomentosa R.Br. var. tomentosa replace: Enchylaena tomentosa var. tomentosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Endiandra limnophila B.Hyland replace: Endiandra limnophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endospermum myrmecophilum L.S.Sm. replace: Endospermum myrmecophilum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon avenaceus (Lindl.) C.E.Hubb. replace: Enneapogon avenaceus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon clelandii N.T.Burb. replace: Enneapogon clelandii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon cylindricus N.T.Burb. replace: Enneapogon cylindricus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon oblongus N.T.Burb. replace: Enneapogon oblongus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon polyphyllus (Domin) N.T.Burb. replace: Enneapogon polyphyllus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enneapogon purpurascens (R.Br.) P.Beauv. replace: Enneapogon purpurascens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Entada rheedii Spreng. replace: Entada rheedii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enteropogon acicularis (Lindl.) Lazarides replace: Enteropogon acicularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enteropogon ramosus B.K.Simon replace: Enteropogon ramosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epipremnum amplissimum (Schott) Engl. replace: Epipremnum amplissimum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis australasica (Steud.) C.E.Hubb. replace: Eragrostis australasica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis confertiflora J.M.Black replace: Eragrostis confertiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis cumingii Steud. replace: Eragrostis cumingii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis desertorum Domin replace: Eragrostis desertorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis dielsii Pilg. ex Diels & E.Pritz. replace: Eragrostis dielsii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis eriopoda Benth. replace: Eragrostis eriopoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis falcata (Gaudich.) Gaudich. ex Steud. replace: Eragrostis falcata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis lanicaulis Lazarides replace: Eragrostis lanicaulis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis laniflora Benth. replace: Eragrostis laniflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis leptocarpa Benth. replace: Eragrostis leptocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis olida Lazarides replace: Eragrostis olida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis setifolia Nees. replace: Eragrostis setifolia reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. limestone (P.K.Latz 5921) replace: Eragrostis sp. Limestone (P.K.Latz 5921) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis spartinoides Steud. replace: Eragrostis spartinoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sterilis Domin replace: Eragrostis sterilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis tenellula (Kunth) Steud. replace: Eragrostis tenellula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis xerophila Domin replace: Eragrostis xerophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophea spinosa (Ewart & O.B.Davies) Paul G.Wilson replace: Eremophea spinosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila alternifolia R.Br. replace: Eremophila alternifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila christophori F.Muell. replace: Eremophila christophori reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila duttonii F.Muell. replace: Eremophila duttonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila forrestii F.Muell. subsp. forrestii replace: Eremophila forrestii subsp. forrestii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila freelingii F.Muell. replace: Eremophila freelingii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila gilesii F.Muell. subsp. gilesii replace: Eremophila gilesii subsp. gilesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila latrobei F.Muell. subsp. latrobei replace: Eremophila latrobei subsp. latrobei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila longifolia (R.Br.) F.Muell. replace: Eremophila longifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila macdonnellii F.Muell. replace: Eremophila macdonnellii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila ovata Chinnock replace: Eremophila ovata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila platythamnos Diels subsp. exotrachys (Kraenzl.) Chinnock replace: Eremophila platythamnos reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila prostrata Chinnock replace: Eremophila prostrata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila serrulata (A.Cunn. ex DC.) Druce replace: Eremophila serrulata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sturtii R.Br. replace: Eremophila sturtii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila willsii F.Muell. subsp. willsii replace: Eremophila willsii subsp. willsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eriachne agrostidea F.Muell. replace: Eriachne agrostidea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne aristidea F.Muell. replace: Eriachne aristidea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne armittii F.Muell. ex Benth. replace: Eriachne armittii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne avenacea R.Br. replace: Eriachne avenacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne basedowii Hartley replace: Eriachne basedowii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne burkittii Jansen replace: Eriachne burkittii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne capillaris R.Br. replace: Eriachne capillaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne ciliata R.Br. replace: Eriachne ciliata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne fastigiata Lazarides replace: Eriachne fastigiata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne filiformis Hartley replace: Eriachne filiformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne helmsii Domin replace: Eriachne helmsii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne mucronata R.Br. replace: Eriachne mucronata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne obtusa R.Br. replace: Eriachne obtusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne pallescens R.Br. var. pallescens replace: Eriachne pallescens var. pallescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eriachne pulchella Domin subsp. pulchella replace: Eriachne pulchella subsp. pulchella reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eriachne sulcata Hartley replace: Eriachne sulcata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne triseta Nees ex Steud. replace: Eriachne triseta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron bonariensis L. replace: Erigeron bonariensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon fistulosum R.Br. ex Sm. replace: Eriocaulon fistulosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon pusillum Sol. ex R.Br. replace: Eriocaulon pusillum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochlamys eremaea N.G.Walsh replace: Eriochlamys eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochloa procera (Retz.) C.E.Hubb. replace: Eriochloa procera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriosema chinense Vogel replace: Eriosema chinense reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erodium angustilobum Carolin replace: Erodium angustilobum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erodium aureum Carolin replace: Erodium aureum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erodium crinitum Carolin replace: Erodium crinitum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erodium cygnorum Nees replace: Erodium cygnorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erycibe coccinea (F.M.Bailey) Hoogland replace: Erycibe coccinea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina variegata L. var. orientalis (L.) Merr. replace: Erythrina variegata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina vespertilio Benth. replace: Erythrina vespertilio reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrophleum chlorostachys (F.Muell.) Baill. replace: Erythrophleum chlorostachys reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum ellipticum R.Br. replace: Erythroxylum ellipticum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus bigalerita F.Muell. replace: Eucalyptus bigalerita reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brachyandra F.Muell. replace: Eucalyptus brachyandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus brevifolia F.Muell. replace: Eucalyptus brevifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus camaldulensis Dehnh. subsp. obtusa (Blakely) Brooker & M.W.McDonald replace: Eucalyptus camaldulensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus coolabah Blakely & Jacobs subsp. arida (Blakely) L.A.S.Johnson & K.D.Hill replace: Eucalyptus coolabah reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gamophylla F.Muell. replace: Eucalyptus gamophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gigantangion L.A.S.Johnson & K.D.Hill replace: Eucalyptus gigantangion reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gillenii Ewart & L.R.Kerr replace: Eucalyptus gillenii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gongylocarpa Blakely replace: Eucalyptus gongylocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus intertexta R.T.Baker replace: Eucalyptus intertexta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus jensenii Maiden replace: Eucalyptus jensenii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leucophloia Brooker subsp. euroa L.A.S.Johnson & K.D.Hill replace: Eucalyptus leucophloia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lucens Brooker & Dunlop replace: Eucalyptus lucens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus mannensis Boomsma replace: Eucalyptus mannensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus microtheca F.Muell. replace: Eucalyptus microtheca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus miniata A.Cunn. ex Schauer replace: Eucalyptus miniata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus normantonensis Maiden & Cambage replace: Eucalyptus normantonensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus odontocarpa F.Muell. replace: Eucalyptus odontocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus oxymitra Blakely replace: Eucalyptus oxymitra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus pachyphylla F.Muell. replace: Eucalyptus pachyphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus patellaris F.Muell. replace: Eucalyptus patellaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus phoenicea F.Muell. replace: Eucalyptus phoenicea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sessilis (Maiden) Blakely replace: Eucalyptus sessilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus socialis F.Muell. ex Miq. subsp. eucentrica (L.A.S.Johnson & K.D.Hill) Nicolle replace: Eucalyptus socialis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tectifica F.Muell. replace: Eucalyptus tectifica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetrodonta F.Muell. replace: Eucalyptus tetrodonta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus thozetiana F.Muell. ex R.T.Baker replace: Eucalyptus thozetiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tintinnans (Blakely & Jacobs) L.A.S.Johnson & K.D.Hill replace: Eucalyptus tintinnans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus trivalvis Blakely replace: Eucalyptus trivalvis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus victrix L.A.S.Johnson & K.D.Hill replace: Eucalyptus victrix reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton sphaericus (Willd.) Anderb. replace: Euchiton sphaericus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eulalia aurea (Bory) Kunth replace: Eulalia aurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eulalia mackinlayi (F.Muell. ex Benth.) Kuntze replace: Eulalia mackinlayi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia armstrongiana Boiss. replace: Euphorbia armstrongiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia biconvexa Domin replace: Euphorbia biconvexa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia bifida Hook. & Arn. replace: Euphorbia bifida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia centralis B.G.Thomson replace: Euphorbia centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii Boiss. replace: Euphorbia drummondii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia hirta L. replace: Euphorbia hirta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia muelleri Boiss. replace: Euphorbia muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia sarcostemmoides J.H.Willis replace: Euphorbia sarcostemmoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia schizolepis F.Muell. ex Boiss. replace: Euphorbia schizolepis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia schultzii Benth. replace: Euphorbia schultzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia stevenii Baill. replace: Euphorbia stevenii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia tannensis Spreng. subsp. eremophila (A.Cunn.) D.C.Hassall replace: Euphorbia tannensis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia wheeleri Baill. replace: Euphorbia wheeleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eurybiopsis macrorhiza DC. + replace: Minuria macrorhiza + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Evolvulus alsinoides L. var. decumbens (R.Br.) Ooststr. replace: Evolvulus alsinoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Evolvulus alsinoides L. var. villosicalyx Ooststr. replace: Evolvulus alsinoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Excoecaria parvifolia Muell.Arg. replace: Excoecaria parvifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Exocarpos latifolius R.Br. replace: Exocarpos latifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Exocarpos sparteus R.Br. replace: Exocarpos sparteus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fatoua villosa (Murray) Nakai replace: Fatoua villosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus adenosperma Miq. replace: Ficus adenosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus benjamina L. replace: Ficus benjamina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus brachypoda (Miq.) Miq. replace: Ficus brachypoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus carpentariensis D.J.Dixon replace: Ficus carpentariensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus cerasicarpa D.J.Dixon replace: Ficus cerasicarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus congesta Roxb. replace: Ficus congesta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus coronulata Miq. replace: Ficus coronulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus henneana Miq. replace: Ficus henneana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus hispida L.f. replace: Ficus hispida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus platypoda (Miq.) Miq. replace: Ficus platypoda var. minor reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus racemosa L. replace: Ficus racemosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus scobina Benth. replace: Ficus scobina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus subpuberula Corner replace: Ficus subpuberula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis acicularis R.Br. replace: Fimbristylis acicularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis ammobia Latz replace: Fimbristylis ammobia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis arnhemensis Latz replace: Fimbristylis arnhemensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis caespitosa R.Br. replace: Fimbristylis caespitosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis caloptera Latz replace: Fimbristylis caloptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis cinnamometorum (Vahl) Kunth replace: Fimbristylis cinnamometorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis complanata (Retz.) Link replace: Fimbristylis complanata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis densa S.T.Blake replace: Fimbristylis densa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis dichotoma Vahl replace: Fimbristylis dichotoma reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis eremophila Latz replace: Fimbristylis eremophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis furva R.Br. replace: Fimbristylis furva reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis lanceolata C.B.Clarke replace: Fimbristylis lanceolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis littoralis Gaudich. var. littoralis replace: Fimbristylis littoralis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis macrantha Boeck. replace: Fimbristylis macrantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis pachyptera S.T.Blake replace: Fimbristylis pachyptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis pallida S.T.Blake replace: Fimbristylis pallida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis pauciflora R.Br. replace: Fimbristylis pauciflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis phaeoleuca S.T.Blake replace: Fimbristylis phaeoleuca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis pterigosperma R.Br. replace: Fimbristylis pterigosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis punctata R.Br. replace: Fimbristylis punctata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis recta F.M.Bailey replace: Fimbristylis recta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis schultzii Boeck. replace: Fimbristylis schultzii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sphaerocephala Benth. replace: Fimbristylis sphaerocephala reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis tetragona R.Br. replace: Fimbristylis tetragona reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis trachycarya F.Muell. replace: Fimbristylis trachycarya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis trigastrocarya F.Muell. replace: Fimbristylis trigastrocarya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis velata R.Br. replace: Fimbristylis velata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis xyridis R.Br. replace: Fimbristylis xyridis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flacourtia territorialis Airy Shaw replace: Flacourtia territorialis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flagellaria indica L. replace: Flagellaria indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flaveria trinervia (Spreng.) C.Mohr replace: Flaveria trinervia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flemingia parviflora Benth. replace: Flemingia parviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flemingia pauciflora Benth. replace: Flemingia pauciflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flueggea virosa (Roxb. ex Willd.) Voigt subsp. melanthesoides (F.Muell.) G.L.Webster replace: Flueggea virosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Frankenia cordata J.M.Black replace: Frankenia cordata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Frankenia serpyllifolia Lindl. replace: Frankenia serpyllifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freycinetia excelsa F.Muell. replace: Freycinetia excelsa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freycinetia percostata Merr. & L.M.Perry replace: Freycinetia percostata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fuirena ciliaris (L.) Roxb. replace: Fuirena ciliaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fuirena umbellata Rottb. replace: Fuirena umbellata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia megalophylla (F.Muell.) J.H.Willis replace: Galactia megalophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia muelleri Benth. replace: Galactia muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galactia tenuiflora (Klein ex Willd.) Wight & Arn. replace: Galactia tenuiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ganophyllum falcatum Blume replace: Ganophyllum falcatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia faucicola Puttock replace: Gardenia faucicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia fucata R.Br. ex Benth. replace: Gardenia fucata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia megasperma F.Muell. replace: Gardenia megasperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia resinosa F.Muell. replace: Gardenia resinosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium brevipes Crisp replace: Gastrolobium brevipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium grandiflorum F.Muell. replace: Gastrolobium grandiflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geijera salicifolia Schott replace: Geijera salicifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geodorum densiflorum (Lam.) Schltr. replace: Geodorum densiflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glinus oppositifolius (L.) Aug.DC. replace: Glinus oppositifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glischrocaryon aureum (Lindl.) Orchard var. angustifolium (Nees) Orchard replace: Glischrocaryon aureum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion apodogynum Airy Shaw replace: Glochidion apodogynum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion sumatranum Miq. replace: Glochidion sumatranum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion xerocarpum (O.Schwarz) Airy Shaw replace: Glochidion xerocarpum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine canescens F.J.Herm. replace: Glycine canescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine tomentella Hayata replace: Glycine tomentella reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycosmis macrophylla (Blume) Miq. replace: Glycosmis macrophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycosmis trifoliata (Blume) Spreng. replace: Glycosmis trifoliata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gnaphalium diamantinensis Paul G.Wilson + replace: Gnaphalium diamantinense + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Gnephosis arachnoidea Turcz. replace: Gnephosis arachnoidea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis eriocarpa (F.Muell.) Benth. replace: Gnephosis eriocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis tenuissima Cass. replace: Gnephosis tenuissima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium polyzygum F.Muell. replace: Gompholobium polyzygum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium simplicifolium (F.Muell. & Tate) Crisp replace: Gompholobium simplicifolium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium subulatum Benth. replace: Gompholobium subulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena brachystylis F.Muell. subsp. brachystylis replace: Gomphrena brachystylis subsp. brachystylis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Gomphrena breviflora F.Muell. replace: Gomphrena breviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena conica (R.Br.) Spreng. replace: Gomphrena conica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena lanata R.Br. replace: Gomphrena lanata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus eremophilus Orchard replace: Gonocarpus eremophilus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus leptothecus (F.Muell.) Orchard replace: Gonocarpus leptothecus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia armitiana F.Muell. replace: Goodenia armitiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia armstrongiana de Vriese replace: Goodenia armstrongiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia azurea F.Muell. replace: Goodenia azurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia bicolor F.Muell. ex Benth. replace: Goodenia bicolor reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia cirrifica F.Muell. replace: Goodenia cirrifica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia cycloptera R.Br. replace: Goodenia cycloptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia fascicularis F.Muell. ex Tate replace: Goodenia fascicularis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia glandulosa K.Krause replace: Goodenia glandulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia heppleana (W.Fitzg.) Carolin replace: Goodenia heppleana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia heterochila F.Muell. replace: Goodenia heterochila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia holtzeana (Specht) Carolin replace: Goodenia holtzeana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia janamba Carolin replace: Goodenia janamba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia lamprosperma F.Muell. replace: Goodenia lamprosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia larapinta Tate replace: Goodenia larapinta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia leiosperma Carolin replace: Goodenia leiosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia lunata J.M.Black replace: Goodenia lunata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia mueckeana F.Muell. replace: Goodenia mueckeana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia purpurea (F.Muell.) Carolin replace: Goodenia purpurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia ramelii F.Muell. replace: Goodenia ramelii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia triodiophila Carolin replace: Goodenia triodiophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia vilmoriniae F.Muell. replace: Goodenia vilmoriniae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossypium australe F.Muell. replace: Gossypium australe reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossypium bickii Prokh. replace: Gossypium bickii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossypium sturtianum J.H.Willis var. sturtianum replace: Gossypium sturtianum var. sturtianum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Graptophyllum spinigerum F.Muell. replace: Graptophyllum spinigerum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea agrifolia A.Cunn. ex R.Br. replace: Grevillea agrifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea angulata R.Br. replace: Grevillea angulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea aurea Olde & Marriott replace: Grevillea aurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea brevis Olde & Marriott replace: Grevillea brevis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea decurrens Ewart & O.B.Davies replace: Grevillea decurrens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea dimidiata F.Muell. replace: Grevillea dimidiata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea eriostachya Lindl. replace: Grevillea eriostachya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea erythroclada W.Fitzg. replace: Grevillea erythroclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea formosa McGill. replace: Grevillea formosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea goodii R.Br. replace: Grevillea goodii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea heliosperma R.Br. replace: Grevillea heliosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea juncifolia Hook. subsp. juncifolia replace: Grevillea juncifolia subsp. juncifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea mimosoides R.Br. replace: Grevillea mimosoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea myosodes McGill. replace: Grevillea myosodes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea prasina McGill. replace: Grevillea prasina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea pteridifolia Knight replace: Grevillea pteridifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea pterosperma F.Muell. replace: Grevillea pterosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea refracta R.Br. subsp. refracta replace: Grevillea refracta subsp. refracta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea rubicunda S.Moore replace: Grevillea rubicunda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Magela Creek (I.D.Cowie 10273 & B.Crase) Brennan & Cowie replace: Grevillea maherae reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Nabarlek (I.D.Cowie 9959) Cowie & Brennan replace: Grevillea sp. [Grevillea sp. Nabarlek (I.D.Cowie 9959) Cowie & Brennan; Nano_2011] @@ -5068,511 +5012,511 @@ taxonomic_updates: replace: Grevillea stenobotrya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea striata R.Br. replace: Grevillea striata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea wickhamii Meisn. subsp. aprica McGill. replace: Grevillea wickhamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia asiatica L. replace: Grewia asiatica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia breviflora Benth. replace: Grewia breviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia oxyphylla Burret replace: Grewia oxyphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia savannicola R.L.Barrett replace: Grewia savannicola reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guettarda speciosa L. replace: Guettarda speciosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gymnanthera oblonga (Burm.f.) P.S.Green replace: Gymnanthera oblonga reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes australiensis J.T.Johanss. replace: Gynochthodes australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes jasminoides (A.Cunn.) Razafim. & B.Bremer replace: Gynochthodes jasminoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes sp. Docherty Hills (G.J.Leach 2186) replace: Gynochthodes sp. Docherty Hills (G.L.Leach 2186) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gypsophila tubulosa (Jaub. & Spach) Boiss. replace: Gypsophila tubulosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrocarpus americanus Jacq. replace: Gyrocarpus americanus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon ramulosus Desf. replace: Gyrostemon ramulosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon tepperi (F.Muell. ex H.Walter) A.S.George replace: Gyrostemon tepperi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Habenaria elongata R.Br. replace: Habenaria elongata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Habenaria hymenophylla Schltr. replace: Habenaria hymenophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum brevicaule F.Muell. replace: Haemodorum brevicaule reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum coccineum R.Br. replace: Haemodorum coccineum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum parviflorum Benth. replace: Haemodorum parviflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea arborescens R.Br. replace: Hakea arborescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea chordophylla F.Muell. replace: Hakea chordophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea divaricata L.A.S.Johnson replace: Hakea divaricata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea grammatophylla (F.Muell.) F.Muell. replace: Hakea grammatophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea leucoptera R.Br. subsp. leucoptera replace: Hakea leucoptera subsp. leucoptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea lorea (R.Br.) R.Br. subsp. lorea replace: Hakea lorea subsp. lorea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea macrocarpa A.Cunn. ex R.Br. replace: Hakea macrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea minyma Maconochie replace: Hakea minyma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea rhombales F.Muell. replace: Hakea rhombales reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea Lindl. var. Allambi Stn (B.W. Strong 676) replace: Halgania cyanea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania glabra J.M.Black replace: Halgania glabra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania solanacea F.Muell. var. Mt Doreen (G.M.Chippendale 4206) replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania solanacea F.Muell. var. Rabbit Flat (T.M.Orr 81) replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haloragis aspera Lindl. replace: Haloragis aspera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haloragis glauca Lindl. f. glauca replace: Haloragis glauca f. glauca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Haloragis gossei F.Muell. replace: Haloragis gossei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haloragis uncatipila Orchard replace: Haloragis uncatipila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hanguana malayana (Jack) Merr. replace: Hanguana malayana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa puberula E.A.Shaw replace: Harmsiodoxa puberula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harnieria kempeana (F.Muell.) R.M.Barker subsp. kempeana replace: Harnieria kempeana subsp. kempeana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Harpullia leichhardtii F.Muell. ex Benth. replace: Harpullia leichhardtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harrisonia brownii A.Juss. replace: Harrisonia brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicia australasica F.Muell. replace: Helicia australasica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres angustifolia L. replace: Helicteres angustifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres cana (Schott & Endl.) Benth. replace: Helicteres cana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres darwinensis Cowie replace: Helicteres darwinensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres flagellaris (Benth.) Cowie replace: Helicteres flagellaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres hirsuta Lour. replace: Helicteres hirsuta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres integrifolia (F.Muell.) Cowie subsp. integrifolia replace: Helicteres integrifolia subsp. integrifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Helicteres isora L. replace: Helicteres isora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres kombolgiana Cowie replace: Helicteres kombolgiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres macrothrix Cowie replace: Helicteres macrothrix reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres procumbens (F.Muell. ex Benth.) Cowie replace: Helicteres procumbens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres serpens Cowie replace: Helicteres serpens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sphaerotheca Cowie replace: Helicteres sphaerotheca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres tenuipila Cowie replace: Helicteres tenuipila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium alcyonium Craven replace: Heliotropium alcyonium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium asperrimum R.Br. replace: Heliotropium asperrimum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium bracteatum R.Br. replace: Heliotropium bracteatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium cunninghamii Benth. replace: Heliotropium cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium curassavicum L. replace: Heliotropium curassavicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium foliatum R.Br. replace: Heliotropium foliatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium indicum L. replace: Heliotropium indicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium pachyphyllum Craven replace: Heliotropium pachyphyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium pleiopterum F.Muell. replace: Heliotropium pleiopterum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium tanythrix Craven replace: Heliotropium tanythrix reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium tenuifolium R.Br. replace: Heliotropium tenuifolium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium ventricosum R.Br. replace: Heliotropium ventricosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helminthostachys zeylanica (L.) Kaulf. replace: Helminthostachys zeylanica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Herissantia crispa (L.) Brizicky. replace: Herissantia crispa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hernandia nymphaeifolia (C.Presl) Kubitzki replace: Hernandia nymphaeifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heteropogon contortus (L.) P.Beauv. ex Roem. & Schult. replace: Heteropogon contortus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heteropogon triticeus (R.Br.) Stapf replace: Heteropogon triticeus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heterostemma magnificum P.I.Forst. replace: Heterostemma magnificum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia angustifolia Benth. replace: Hibbertia angustifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia brownii Benth. replace: Hibbertia brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia candicans Benth. replace: Hibbertia candicans reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia complanata (R.Br. ex DC.) J.W.Horn replace: Hibbertia complanata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia dealbata (R.Br. ex DC.) Benth. replace: Hibbertia dealbata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia dilatata (Benth.) J.W.Horn replace: Hibbertia dilatata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia echiifolia R.Br. ex Benth. replace: Hibbertia echiifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia glaberrima F.Muell. replace: Hibbertia glaberrima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia juncea (Benth.) J.W.Horn replace: Hibbertia juncea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia lepidota R.Br. ex DC. replace: Hibbertia lepidota reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia praestans (Craven & Dunlop) J.W.Horn replace: Hibbertia praestans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sphenandra (F.Muell. & Tate) J.W.Horn replace: Hibbertia sphenandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia tomentosa R.Br. ex DC. replace: Hibbertia tomentosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus arnhemensis F.D.Wilson replace: Hibiscus arnhemensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus bacalusius Craven, F.D.Wilson & Fryxell replace: Hibiscus bacalusius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus brennanii Craven replace: Hibiscus brennanii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus burtonii F.M.Bailey replace: Hibiscus burtonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus byrnesii F.D.Wilson replace: Hibiscus byrnesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus fallax Craven, F.D.Wilson & Fryxell replace: Hibiscus fallax reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus geranioides A.Cunn. ex Benth. replace: Hibiscus geranioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus krichauffianus F.Muell. replace: Hibiscus krichauffianus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus leptocladus Benth. replace: Hibiscus leptocladus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus lobatus (Murray) Kuntze replace: Hibiscus lobatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus meraukensis Hochr. replace: Hibiscus meraukensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus panduriformis Burm.f. replace: Hibiscus panduriformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus pentaphyllus F.Muell. replace: Hibiscus pentaphyllus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus petherickii Craven, F.D.Wilson & Fryxell replace: Hibiscus petherickii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Spirit Hills (G.Boehme 5) NT Herbarium replace: Hibiscus sp. [Hibiscus sp. Spirit Hills (G.Boehme 5) NT Herbarium; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -5582,57 +5526,57 @@ taxonomic_updates: replace: Hibiscus sturtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sturtii Hook. var. grandiflorus Benth. replace: Hibiscus sturtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sturtii Hook. var. platychlamys Benth. replace: Hibiscus sturtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sturtii Hook. var. sturtii replace: Hibiscus sturtii var. sturtii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hibiscus sturtii Hook. var. truncatus Fryxell replace: Hibiscus sturtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus symonii F.D.Wilson & Byrnes replace: Hibiscus symonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus tiliaceus L. replace: Hibiscus tiliaceus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus verdcourtii Craven replace: Hibiscus verdcourtii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus vitifolius L. replace: Hibiscus vitifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hildegardia australiensis G.J.Leach & Cheek replace: Hildegardia australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Histiopteris incisa (Thunb.) T.J.Sm. replace: Histiopteris incisa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis (Warb.) K.Schum. replace: Homalanthus sp. [Homalanthus novoguineensis (Warb.) K.Schum.; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -5642,466 +5586,474 @@ taxonomic_updates: replace: Homalocalyx ericaeus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Horsfieldia australiana S.T.Blake replace: Horsfieldia australiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hoya australis R.Br. ex J.Traill replace: Hoya australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Huberantha nitidissima (Dunal) Chaowasku replace: Huberantha nitidissima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus aurantiacus (F.Muell. ex Benth.) F.Muell. replace: Hybanthus aurantiacus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydriastele ramsayi (Becc.) W.J.Baker & Loo replace: Hydriastele ramsayi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydriastele wendlandiana (F.Muell.) H.Wendl. & Drude replace: Hydriastele wendlandiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle trachycarpa F.Muell. replace: Hydrocotyle trachycarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hygrophila angustifolia R.Br. replace: Hygrophila angustifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hymenachne acutigluma (Steud.) Gilliland replace: Hymenachne acutigluma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypericum gramineum G.Forst. replace: Hypericum gramineum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypertelis cerviana (L.) Thulin replace: Hypertelis cerviana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypolytrum nemorum (Vahl) Spreng. replace: Hypolytrum nemorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ichnocarpus frutescens R.Br. replace: Ichnocarpus frutescens reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilex arnhemensis (F.Muell.) Loes. subsp. arnhemensis replace: Ilex arnhemensis subsp. arnhemensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Imperata cylindrica (L.) Reausch. replace: Imperata cylindrica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera basedowii E.Pritz. replace: Indigofera basedowii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera colutea (Burm.f.) Merr. replace: Indigofera colutea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera cornuligera Peter G.Wilson & Rowe subsp. cornuligera replace: Indigofera cornuligera subsp. cornuligera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Indigofera helmsii Peter G.Wilson replace: Indigofera helmsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera hirsuta L. replace: Indigofera hirsuta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera leucotricha E.Pritz. replace: Indigofera leucotricha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera linifolia (L.f.) Retz. replace: Indigofera linifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera linnaei Ali replace: Indigofera linnaei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera psammophila Peter G.Wilson replace: Indigofera psammophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera saxicola F.Muell. ex Benth. replace: Indigofera saxicola reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Indigofera sp. MacDonnell Ranges (P.K.Latz 11587) Peter Wilson + replace: Indigofera cornuligera + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Indigofera tinctoria L. replace: Indigofera tinctoria reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera trifoliata L. replace: Indigofera trifoliata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera trita L.f. replace: Indigofera trita reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Intsia bijuga (Colebr.) Kuntze replace: Intsia bijuga reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iphigenia indica (L.) Kunth replace: Iphigenia indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea abrupta R.Br. replace: Ipomoea abrupta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea aquatica Forssk. replace: Ipomoea aquatica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea argillicola R.W.Johnson replace: Ipomoea argillicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea coptica (L.) Roth ex Roem. & Schult. replace: Ipomoea coptica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea costata F.Muell. ex Benth. replace: Ipomoea costata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea diversifolia R.Br. replace: Ipomoea diversifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea gracilis R.Br. replace: Ipomoea gracilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea graminea R.Br. replace: Ipomoea graminea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea mauritiana Jacq. replace: Ipomoea mauritiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea muelleri Benth. replace: Ipomoea muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea nil (L.) Roth replace: Ipomoea nil reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea plebeia R.Br. replace: Ipomoea plebeia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea polpha R.W.Johnson subsp. latzii R.W.Johnson replace: Ipomoea polpha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea polymorpha Roem. & Schult. replace: Ipomoea polymorpha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea purpurea Lam. replace: Ipomoea purpurea reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea triloba L. replace: Ipomoea triloba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea velutina R.Br. replace: Ipomoea velutina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea violacea L. replace: Ipomoea violacea reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isachne confusa Ohwi replace: Isachne confusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ischaemum decumbens Benth. replace: Ischaemum decumbens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema dolichotrichum C.E.Hubb. replace: Iseilema dolichotrichum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema eremaeum S.T.Blake replace: Iseilema eremaeum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema membranaceum (Lindl.) Domin replace: Iseilema membranaceum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iseilema vaginiflorum Domin replace: Iseilema vaginiflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isolepis australiensis (Maiden & Betche) K.L.Wilson replace: Isolepis australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma petraea F.Muell. replace: Isotoma petraea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis atropurpurea F.Muell. replace: Isotropis atropurpurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis centralis Maconochie replace: Isotropis centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixiochlamys filicifolia Dunlop replace: Ixiochlamys filicifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixiochlamys nana (Ewart & Jean White) Grau replace: Ixiochlamys nana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixora timorensis Decne. replace: Ixora timorensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia aculeata W.Fitzg. replace: Jacksonia aculeata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia dilatata Benth. replace: Jacksonia dilatata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia divisa Chappill replace: Jacksonia divisa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia forrestii F.Muell. replace: Jacksonia forrestii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia odontoclada F.Muell. ex Benth. replace: Jacksonia odontoclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia pendens Chappill replace: Jacksonia pendens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia reclinata Chappill replace: Jacksonia reclinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia stellaris Chappill replace: Jacksonia stellaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia browniana Ooststr. replace: Jacquemontia browniana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia paniculata (Burm.f. ) Hallier f. replace: Jacquemontia paniculata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum calcareum F.Muell. replace: Jasminum calcareum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Jasminum didymum G.Forst. subsp. lineare (R.Br.) P.S.Green + replace: Jasminum didymum subsp. lineare + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: varietas - find: Jasminum elongatum (Bergius) Willd. replace: Jasminum elongatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum molle R.Br. replace: Jasminum molle reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia eugeniae F.Muell. replace: Josephinia eugeniae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia prorepens (F.Muell.) F.Muell. replace: Kennedia prorepens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kohautia australiensis Halford replace: Kohautia australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Labichea saxicola J.H.Ross replace: Labichea saxicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lamarchea sulcata A.S.George replace: Lamarchea sulcata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lantana camara L. replace: Lantana camara reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Laportea interrupta (L.) Chew replace: Laportea interrupta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Larsenaikia suffruticosa (R.Br. ex Benth.) Tirveng. replace: Larsenaikia suffruticosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencella davenportii (F.Muell.) Paul G.Wilson replace: Lawrencella davenportii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencia glomerata Hook. replace: Lawrencia glomerata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia divaricata F.Muell. replace: Lechenaultia divaricata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia filiformis R.Br. replace: Lechenaultia filiformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia striata F.Muell. replace: Lechenaultia striata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leea novoguineensis Valeton replace: Leea novoguineensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leea rubra Blume ex Spreng. replace: Leea rubra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leersia hexandra Sw. replace: Leersia hexandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leiocarpa semicalva (F.Muell.) Paul G.Wilson subsp. semicalva replace: Leiocarpa semicalva subsp. semicalva reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lemna tenera Kurz replace: Lemna tenera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium muelleriferdinandi Thell. replace: Lepidium sp. [Lepidium muelleriferdinandi Thell.; Nano_2011] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -6111,2739 +6063,2771 @@ taxonomic_updates: replace: Lepidium oxytrichum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium phlebopetalum (F.Muell.) F.Muell. replace: Lepidium phlebopetalum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptochloa digitata (R.Br.) Domin replace: Leptochloa digitata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema anomalum (Ewart & Morrison) Crisp replace: Leptosema anomalum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema chambersii F.Muell. replace: Leptosema chambersii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema villosum Crisp replace: Leptosema villosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucochrysum fitzgibbonii (F.Muell.) Paul G.Wilson replace: Leucochrysum fitzgibbonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucochrysum stipitatum (F.Muell.) Paul G.Wilson replace: Leucochrysum stipitatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon acuminatus R.Br. replace: Leucopogon acuminatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sonderensis J.H.Willis replace: Leucopogon sonderensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Limnophila fragrans (G.Forst.) Seem. replace: Limnophila fragrans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia calliandra W.R.Barker replace: Lindernia calliandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia clausa (F.Muell.) F.Muell. replace: Lindernia clausa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia lobelioides (F.Muell.) F.Muell. replace: Lindernia lobelioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindernia venustula W.R.Barker replace: Lindernia venustula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea brachypoda (Baker) Salomon replace: Lindsaea brachypoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea ensifolia Sw. replace: Lindsaea ensifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea media R.Br. replace: Lindsaea media reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindsaea walkerae Hook. replace: Lindsaea walkerae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lipocarpha microcephala (R.Br.) Kunth replace: Lipocarpha microcephala reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus cordata (A.J.Scott) N.Snow & Guymer replace: Lithomyrtus cordata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus dunlopii N.Snow & Guymer replace: Lithomyrtus dunlopii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus kakaduensis N.Snow & Guymer replace: Lithomyrtus kakaduensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus linariifolia N.Snow & Guymer replace: Lithomyrtus linariifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus repens N.Snow & Guymer replace: Lithomyrtus repens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lithomyrtus retusa (Endl.) N.Snow & Guymer replace: Lithomyrtus retusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Litsea breviumbellata Allen replace: Litsea breviumbellata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Litsea glutinosa (Lour.) C.B.Rob. replace: Litsea glutinosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona benthamii F.M.Bailey replace: Livistona benthamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona humilis R.Br. replace: Livistona humilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona inermis R.Br. replace: Livistona inermis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona mariae F.Muell. subsp. mariae replace: Livistona mariae subsp. mariae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Livistona mariae F.Muell. subsp. rigida (Becc.) Rodd replace: Livistona mariae reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Livistona victoriae Rodd replace: Livistona victoriae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia heterophylla Labill. replace: Lobelia heterophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra leucocephala (R.Br.) Ewart var. robusta A.T.Lee replace: Lomandra leucocephala reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra patens A.T.Lee replace: Lomandra patens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophopetalum arnhemicum Byrnes replace: Lophopetalum arnhemicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophostemon lactifluus (F.Muell.) Peter Wilson & J.T.Waterh. replace: Lophostemon lactifluus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lotus cruentus Court replace: Lotus cruentus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ludwigia adscendens (L.) H.Hara replace: Ludwigia adscendens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ludwigia hyssopifolia (G.Don) Exell replace: Ludwigia hyssopifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ludwigia octovalvis (Jacq.) Raven replace: Ludwigia octovalvis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ludwigia perennis L. replace: Ludwigia perennis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luffa aegyptiaca Mill. replace: Luffa aegyptiaca reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luffa saccata F.Muell. ex I.Telford replace: Luffa saccata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luisia corrugata D.L.Jones replace: Luisia corrugata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Luvunga monophylla (DC.) Mabb. replace: Luvunga monophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lygodium flexuosum (L.) Sw. replace: Lygodium flexuosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lygodium microphyllum (Cav.) R.Br. replace: Lygodium microphyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiana exocarpi (Behr) Tiegh. subsp. exocarpi replace: Lysiana exocarpi subsp. exocarpi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lysiana murrayi (Tate) Tiegh. replace: Lysiana murrayi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiana spathulata (Blakely) Barlow subsp. parvifolia Barlow replace: Lysiana spathulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiana spathulata (Blakely) Barlow subsp. spathulata replace: Lysiana spathulata subsp. spathulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lysiana subfalcata (Hook.) Barlow replace: Lysiana subfalcata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macaranga involucrata (Roxb.) Baill. var. mallotoides (Roxb.) Baill. replace: Macaranga involucrata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macaranga tanarius (L.) Muell.Arg. replace: Macaranga tanarius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macarthuria vertex Lepschi replace: Macarthuria vertex reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macgregoria racemigera F.Muell. replace: Macgregoria racemigera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mackinlaya macrosciadea (F.Muell.) F.Muell. replace: Mackinlaya macrosciadea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macropteranthes kekwickii F.Muell. ex Benth. replace: Macropteranthes kekwickii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macrozamia macdonnellii (F.Muell. ex Miq.) A.DC. replace: Macrozamia macdonnellii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana aphylla (R.Br.) Paul G.Wilson replace: Maireana aphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana astrotricha (L.A.S.Johnson) Paul G.Wilson replace: Maireana astrotricha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana georgei (Diels) Paul G.Wilson replace: Maireana georgei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana integra (Paul G.Wilson) Paul G.Wilson replace: Maireana integra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana scleroptera (J.M.Black) Paul G.Wilson replace: Maireana scleroptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana triptera (Benth.) Paul G.Wilson replace: Maireana triptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana villosa (Lindl.) Paul G.Wilson replace: Maireana villosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malachra fasciata Jacq. var. lineariloba (Turcz.) Gurke replace: Malachra fasciata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus dispersus P.I.Forst. replace: Mallotus dispersus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus nesophilus Muell.Arg. replace: Mallotus nesophilus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus philippensis (Lam.) Muell.Arg. replace: Mallotus philippensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malva parviflora L. replace: Malva parviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malvastrum americanum (L.) Torr. replace: Malvastrum americanum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mapania macrocephala (Gaudich) K.Schum. in Warb. replace: Mapania macrocephala reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maranthes corymbosa Blume replace: Maranthes corymbosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia australis (R.Br.) Druce replace: Marsdenia australis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia geminata (R.Br.) P.I.Forst. replace: Marsdenia geminata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia glandulifera C.T.White replace: Marsdenia glandulifera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia hemiptera Rchb.f. replace: Marsdenia hemiptera reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia velutina R.Br. replace: Marsdenia velutina reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsdenia viridiflora R.Br. subsp. tropica P.I.Forst. replace: Marsdenia viridiflora reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsilea drummondii A.Braun replace: Marsilea drummondii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsilea exarata A.Braun replace: Marsilea exarata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsilea latzii D.L.Jones replace: Marsilea latzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marsilea mutica Mett. replace: Marsilea mutica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne cylindrocarpa (Burck) Heusden replace: Meiogyne cylindrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca argentea W.Fitzg. replace: Melaleuca argentea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca bracteata F.Muell. replace: Melaleuca bracteata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca cajuputi Powell replace: Melaleuca cajuputi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca cornucopiae Byrnes replace: Melaleuca cornucopiae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca faucicola Craven replace: Melaleuca faucicola reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca glomerata F.Muell. replace: Melaleuca glomerata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca lasiandra F.Muell. replace: Melaleuca lasiandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca leucadendra (L.) L. replace: Melaleuca leucadendra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca minutifolia F.Muell. replace: Melaleuca minutifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca nervosa (Lindl.) Cheel replace: Melaleuca nervosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca nervosa s.lat. replace: Melaleuca nervosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sericea Byrnes replace: Melaleuca sericea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca stipitata Craven replace: Melaleuca stipitata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca triumphalis Craven replace: Melaleuca triumphalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca viridiflora Sol. ex Gaertn. replace: Melaleuca viridiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melastoma malabathricum L. subsp. malabathricum replace: Melastoma malabathricum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melhania oblongifolia F.Muell. replace: Melhania oblongifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melia azedarach L. replace: Melia azedarach reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicope elleryana (F.Muell.) T.G.Hartley replace: Melicope elleryana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melinis repens (Willd.) Zizka replace: Melinis repens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melochia corchorifolia L. replace: Melochia corchorifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodinus forbesii Fawc. replace: Melodinus forbesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Memecylon arnhemensis Whiffin replace: Memecylon arnhemensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Memecylon pauciflorum Blume replace: Memecylon pauciflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Menkea sphaerocarpa F.Muell. replace: Menkea sphaerocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Menkea villosula (F.Muell. & Tate) J.M.Black replace: Menkea villosula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Merremia gemella (Burm.f.) Hallier f. replace: Merremia gemella reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Merremia hederacea (Burm.f.) Hallier f. replace: Merremia hederacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Merremia incisa (R.Br.) Hallier f. replace: Merremia incisa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesosphaerum suaveolens (L.) Kuntze replace: Mesosphaerum suaveolens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micraira dentata Lazarides replace: Micraira dentata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micraira tenuis Lazarides replace: Micraira tenuis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microlepia speluncae (L.) T.Moore replace: Microlepia speluncae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromelum minutum (G.Forst.) Wight & Arn. replace: Micromelum minutum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus flaviflora (F.Muell.) F.Muell. ex J.M.Black replace: Micromyrtus flaviflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microsorum grossum (Langsd. & Fisch.) S.B.Andrews replace: Microsorum grossum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microstachys chamaelea (L.) A.Juss. ex Hook.f. replace: Microstachys chamaelea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Miliusa brahei (F.Muell.) Jessup replace: Miliusa brahei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Miliusa traceyi Jessup replace: Miliusa traceyi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mimusops elengi L. replace: Mimusops elengi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Minuria integerrima (DC.) Benth. replace: Minuria integerrima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Minuria tridens (D.A.Cooke) Lander replace: Minuria tridens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia viminalis (A.Cunn. ex Benth.) C.A.Gardner replace: Mirbelia viminalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mischocarpus stipitatus S.T.Reynolds replace: Mischocarpus stipitatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme connata R.Br. replace: Mitrasacme connata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme exserta F.Muell. replace: Mitrasacme exserta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme floribunda Dunlop replace: Mitrasacme floribunda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme glaucescens Dunlop replace: Mitrasacme glaucescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme laevis Benth. replace: Mitrasacme laevis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme nummularia S.Moore replace: Mitrasacme nummularia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitrasacme retroloba Dunlop replace: Mitrasacme retroloba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mitreola petiolata (J.F.Gmel.) Torr. & A.Gray replace: Mitreola petiolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mnesithea formosa (R.Br.) de Koning & Sosef replace: Mnesithea formosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mnesithea rottboellioides (R.Br.) de Koning & Sosef replace: Mnesithea rottboellioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Molineria capitulata (Lour.) Herbert replace: Molineria capitulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monachather paradoxus Steud. replace: Monachather paradoxus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monoon australe (Benth.) B.Xue & R.M.K.Saunders replace: Monoon australe reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotaxis tenuis Airy Shaw replace: Monotaxis tenuis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morinda citrifolia L. replace: Morinda citrifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mucuna gigantea (Willd.) DC. subsp. gigantea replace: Mucuna gigantea subsp. gigantea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia sp. Mt Brockman (L.A.Craven 2357) Short & Cowie replace: Muehlenbeckia sp. Mt Brockman (L.A.Craven 2357) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muniria quadrangulata (Munir) N.Streiber & B.J.Conn replace: Muniria quadrangulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murdannia graminea (R.Br.) A.Bruckn. replace: Murdannia graminea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murraya paniculata (L.) Jack replace: Murraya paniculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myoporum montanum R.Br. replace: Myoporum montanum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myriocephalus rudallii (F.Muell.) Benth. replace: Myriocephalus rudallii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myristica insipida R.Br. replace: Myristica insipida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine benthamiana (Mez) A.J.Ewart replace: Myrsine benthamiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrsine pedicellata Jackes replace: Myrsine pedicellata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nauclea orientalis (L.) L. replace: Nauclea orientalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nelsonia campestris R.Br. replace: Nelsonia campestris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neolitsea brassii Allen replace: Neolitsea brassii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nephrolepis acutifolia (Desv.) C.Chr. replace: Nephrolepis acutifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nephrolepis hirsutula (G.Forst.) C.Presl replace: Nephrolepis hirsutula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neptunia dimorphantha Domin replace: Neptunia dimorphantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neptunia monosperma F.Muell. ex Benth. replace: Neptunia monosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia aragoana Gaudich. replace: Nervilia aragoana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia crociformis (Zoll. & Mor.) Seidenf. replace: Nervilia crociformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia dallachyana (Benth.) Schltr. replace: Nervilia dallachyana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia holochila (F.Muell.) Schltr. replace: Nervilia holochila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nervilia peltata B.Gray & D.L.Jones replace: Nervilia peltata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neurachne munroi (F.Muell.) F.Muell. replace: Neurachne munroi reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neurachne tenuifolia S.T.Blake replace: Neurachne tenuifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Newcastelia bracteosa F.Muell. replace: Newcastelia bracteosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Newcastelia cephalantha F.Muell. replace: Newcastelia cephalantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Newcastelia spodiotricha F.Muell. replace: Newcastelia spodiotricha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana gossei Domin replace: Nicotiana gossei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana rosulata (S.Moore) Domin subsp. ingulba (J.M.Black) P.Horton replace: Nicotiana rosulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nymphaea violacea Lehm. replace: Nymphaea violacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nymphoides indica (L.) Kuntze replace: Nymphoides indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olax aphylla R.Br. replace: Olax aphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olax imbricata Roxb. replace: Olax imbricata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia corymbosa L. var. corymbosa replace: Oldenlandia corymbosa var. corymbosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Oldenlandia pinifolia (Wall. ex G.Don) Kuntze replace: Oldenlandia pinifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia thysanota (Halford) Halford replace: Oldenlandia thysanota reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia ferresii (F.Muell.) F.Muell. ex Benth. replace: Olearia ferresii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia macdonnellensis D.A.Cooke replace: Olearia macdonnellensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia stuartii (F.Muell.) F.Muell. ex Benth. replace: Olearia stuartii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia subspicata (Hook.) Benth. replace: Olearia subspicata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Omphalolappula concava (F.Muell.) Brand replace: Omphalolappula concava reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Operculina aequisepala (Domin) R.W.Johnson replace: Operculina aequisepala reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Operculina codonantha (Benth.) Hallier f. replace: Operculina codonantha reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ophioglossum intermedium Hook.f. replace: Ophioglossum intermedium reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ophioglossum lusitanicum L. replace: Ophioglossum lusitanicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ophioglossum reticulatum L. replace: Ophioglossum reticulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ophiuros exaltatus (L.) Kuntze replace: Ophiuros exaltatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opilia amentacea Roxb. replace: Opilia amentacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oplismenus burmanni (Retz.) P.Beauv. replace: Oplismenus burmanni reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oplismenus compositus (L.) P.Beauv. replace: Oplismenus compositus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orianthera centralis (B.J.Conn) C.S.P.Foster & B.J.Conn replace: Orianthera centralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oryza australiensis Domin replace: Oryza australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osbeckia australiana Naudin replace: Osbeckia australiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osteocarpum dipterocarpum (F.Muell.) Volkens replace: Osteocarpum dipterocarpum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Owenia reticulata F.Muell. replace: Owenia reticulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Owenia vernicosa F.Muell. replace: Owenia vernicosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ozothamnus kempei (F.Muell.) Paul G.Wilson replace: Ozothamnus kempei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pachygone ovata (Poir.) Hook.f. & Thomson replace: Pachygone ovata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus aquaticus F.Muell. replace: Pandanus aquaticus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus spiralis R.Br. replace: Pandanus spiralis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandorea doratoxylon (J.M.Black) J.M.Black replace: Pandorea doratoxylon reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Panicum mindanaense Merr. replace: Panicum mindanaense reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Panicum seminudum Domin replace: Panicum seminudum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Panicum trachyrhachis Benth. replace: Panicum trachyrhachis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Panicum trichoides Sw. replace: Panicum trichoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paraceterach reynoldsii (F.Muell.) Tindale replace: Paraceterach reynoldsii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paractaenum refractum (F.Muell.) R.D.Webster replace: Paractaenum refractum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paraneurachne muelleri (Hack.) S.T.Blake replace: Paraneurachne muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parietaria cardiostegia Greuter replace: Parietaria cardiostegia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parietaria debilis G.Forst. replace: Parietaria debilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parinari nonda F.Muell. ex Benth. replace: Parinari nonda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parsonsia alboflavescens (Dennst.) Mabb. replace: Parsonsia alboflavescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parsonsia velutina R.Br. replace: Parsonsia velutina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalidium clementii (Domin) C.E.Hubb. replace: Paspalidium clementii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalidium constrictum (Domin) C.E.Hubb. replace: Paspalidium constrictum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalidium jubiflorum (Trin.) Hughes replace: Paspalidium jubiflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalidium rarum (R.Br.) Hughes replace: Paspalidium rarum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paspalum scrobiculatum L. replace: Paspalum scrobiculatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora foetida L. replace: Passiflora foetida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Passiflora suberosa L. replace: Passiflora suberosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Patersonia macrantha Benth. replace: Patersonia macrantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pavetta brownii Bremek. var. brownii replace: Pavetta brownii var. brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Peltophorum pterocarpum (DC.) Backer ex K.Heyne replace: Peltophorum pterocarpum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium muelleri Benth. replace: Peplidium muelleri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Perotis rara R.Br. replace: Perotis rara reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia falcata R.Br. replace: Persoonia falcata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostigma banksii Britten & S.Moore replace: Petalostigma banksii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostigma nummularium Airy Shaw replace: Petalostigma nummularium reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostigma pubescens Domin replace: Petalostigma pubescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostigma quadriloculare F.Muell. replace: Petalostigma quadriloculare reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostylis cassioides (F.Muell.) Symon replace: Petalostylis cassioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petraeomyrtus punicea (Byrnes) Craven replace: Petraeomyrtus punicea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phaius amboinensis Blume replace: Phaius amboinensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phaleria macrocarpa (Scheff.) Boerl. replace: Phaleria macrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phaleria octandra (L.) Baill. replace: Phaleria octandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phragmites australis (Cav.) Trin. ex Steud. replace: Phragmites australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phragmites karka (Retz.) Steud. replace: Phragmites karka reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus amarus K.Schum. & Thonn. replace: Phyllanthus amarus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus baccatus F.Muell ex Benth. replace: Phyllanthus baccatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus carpentariae Muell.Arg. replace: Phyllanthus carpentariae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus cauticola J.T.Hunter & J.J.Bruhl replace: Phyllanthus cauticola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus debilis Klein ex Willd. replace: Phyllanthus debilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus eutaxioides S.Moore replace: Phyllanthus eutaxioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus exilis S.Moore replace: Phyllanthus exilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus flagellaris Benth. replace: Phyllanthus flagellaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Phyllanthus hebecarpus Benth. + replace: Phyllanthus carpentariae + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Phyllanthus lacerosus Airy Shaw replace: Phyllanthus lacerosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus maderaspatensis L. replace: Phyllanthus maderaspatensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus minutiflorus F.Muell. ex Muell.Arg. replace: Phyllanthus minutiflorus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sulcatus J.T.Hunter & J.J.Bruhl replace: Phyllanthus sulcatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus urinaria L. replace: Phyllanthus urinaria reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus virgatus G.Forst. replace: Phyllanthus virgatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Physalis angulata L. replace: Physalis angulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea filifolia (Rye) C.S.P.Foster & Henwood replace: Pimelea filifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea punicea R.Br. replace: Pimelea punicea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sanguinea F.Muell. replace: Pimelea sanguinea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea trichostachya Lindl. replace: Pimelea trichostachya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Piper macropiper Pennant replace: Piper macropiper reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pipturus argenteus (J.R.Forst.) Wedd. replace: Pipturus argenteus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pisonia aculeata L. replace: Pisonia aculeata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum angustifolium Lodd. replace: Pittosporum angustifolium reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum ferrugineum Dryand. in W.T.Aiton subsp. ferrugineum replace: Pittosporum ferrugineum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum moluccanum (Lam.) Miq. replace: Pittosporum moluccanum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pityrodia jamesii Specht replace: Pityrodia jamesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pityrodia loricata (F.Muell.) E.Pritz. replace: Pityrodia loricata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pityrodia pungens Munir replace: Pityrodia pungens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plagiocarpus axillaris Benth. replace: Plagiocarpus axillaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella arnhemica (F.Muell. ex Benth.) P.Royen replace: Planchonella arnhemica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonia careya (F.Muell.) Kunth replace: Planchonia careya reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platyzoma microphyllum R.Br. replace: Platyzoma microphyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plectranthus scutellarioides (L.) R.Br. replace: Plectranthus scutellarioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pleioluma laurifolia (A.Rich.) Swenson replace: Pleioluma laurifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pleurocarpaea denticulata Benth. replace: Pleurocarpaea denticulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pleurosorus rutifolius (R.Br.) Fee + replace: Asplenium subglandulosum + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Pleurostylia opposita (Wall.) Alston replace: Pleurostylia opposita reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea dunlopii Hunger replace: Pluchea dunlopii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea indica (L.) Less. replace: Pluchea indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea rubelliflora (F.Muell.) B.L.Rob. replace: Pluchea rubelliflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea tetranthera F.Muell. replace: Pluchea tetranthera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plumbago zeylanica L. replace: Plumbago zeylanica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa annua L. replace: Poa annua reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podocarpus grayae de Laub. replace: Podocarpus grayae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis canescens A.Cunn. ex DC. replace: Podolepis canescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycalymma stuartii F.Muell. ex Sond. replace: Polycalymma stuartii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea breviflora F.Muell. replace: Polycarpaea breviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea corymbosa (L.) Lam. replace: Polycarpaea corymbosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea holtzei Maiden & E.Betche replace: Polycarpaea holtzei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea longiflora F.Muell. replace: Polycarpaea longiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea violacea (Mart.) Benth. replace: Polycarpaea violacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala coralliformis R.A.Kerrigan replace: Polygala coralliformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala eriocephala F.Muell. ex Benth. replace: Polygala eriocephala reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala exsquarrosa Adema replace: Polygala exsquarrosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala isingii Pedley replace: Polygala isingii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala longifolia Poir. replace: Polygala longifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala orbicularis Benth. replace: Polygala orbicularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala stenoclada Benth. replace: Polygala stenoclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria ambigua R.Br. replace: Polymeria ambigua reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria pusilla R.Br. replace: Polymeria pusilla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polypogon monspeliensis (L.) Desf. replace: Polypogon monspeliensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pomax ammophila Ngugi + replace: Pomax ammophila + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Poranthera microphylla Brongn. replace: Poranthera microphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Portulaca bicolor F.Muell. replace: Portulaca bicolor reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouzolzia zeylanica (L.) A.Benn. replace: Pouzolzia zeylanica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Premna acuminata R.Br. replace: Premna acuminata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Premna dallachyana Benth. replace: Premna dallachyana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Premna herbacea Roxb. replace: Premna herbacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Premna odorata Blanco replace: Premna odorata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Premna serratifolia L. replace: Premna serratifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera althoferi B.J.Conn subsp. longifolia B.J.Conn replace: Prostanthera althoferi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera sericea (J.M.Black) B.J.Conn replace: Prostanthera sericea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera striatiflora F.Muell. replace: Prostanthera striatiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseuderanthemum variabile (R.Br.) Radlk. replace: Pseuderanthemum variabile reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudognaphalium luteoalbum (L.) Hilliard & B.L.Burtt replace: Pseudognaphalium luteoalbum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudopogonatherum contortum (Brongn.) A.Camus replace: Pseudopogonatherum contortum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudopogonatherum irritans (R.Br.) A.Camus replace: Pseudopogonatherum irritans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudoraphis spinescens (R.Br.) Vickery replace: Pseudoraphis spinescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psilotum nudum (L.) Griseb. replace: Psilotum nudum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria coelosperma F.M.Bailey replace: Psychotria coelosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria daphnoides A.Cunn. ex Hook. replace: Psychotria daphnoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria loniceroides Sieber ex DC. replace: Psychotria loniceroides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria nesophila F.Muell. replace: Psychotria nesophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax attenuata (R.Br. ex Benth.) S.T.Reynolds & R.J.F.Hend. var. myrmecophila S.T.Reynolds & R.J.F.Hend. replace: Psydrax attenuata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax latifolia (F.Muell. ex Benth.) S.T.Reynolds & R.J.F.Hend. replace: Psydrax latifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax odorata (Forst.f.) A.C.Sm. & S.P.Darwin subsp. arnhemica S.T.Reynolds & R.J.F.Hend. replace: Psydrax odorata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax suaveolens (S.Moore) S.T.Reynolds & R.J.F.Hend. replace: Psydrax suaveolens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pteridium revolutum (Blume) Nakai replace: Pteridium revolutum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pternandra coerulescens Jack replace: Pternandra coerulescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon serrulatum (Montrouz.) Guillaumin var. velutinum (Ewart & O.B.Davies) Guillaumin replace: Pterocaulon serrulatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon sphacelatum (Labill.) Benth. & Hook. ex F.Muell. replace: Pterocaulon sphacelatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus clementii (Farmar) Benl replace: Ptilotus clementii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus conicus R.Br. replace: Ptilotus conicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus corymbosus R.Br. replace: Ptilotus corymbosus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus distans (R.Br.) Poir. replace: Ptilotus distans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus exaltatus Nees var. exaltatus replace: Ptilotus exaltatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus helipteroides (F.Muell.) F.Muell. replace: Ptilotus helipteroides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus nobilis (Lindl. ex Mitch.) F.Muell. subsp. nobilis replace: Ptilotus nobilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus obovatus (Gaudich.) F.Muell. var. obovatus replace: Ptilotus obovatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus polystachyus (Gaudich.) F.Muell. replace: Ptilotus polystachyus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus schwartzii (F.Muell.) Tate replace: Ptilotus schwartzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sessilifolius (Lindl.) Benl replace: Ptilotus sessilifolius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus xerophilus T.Hammer & R.W.Davis replace: Ptilotus xerophilus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptychosperma macarthurii (H.Wendl. ex H.J.Veitch) H.Wendl. ex Hook.f. replace: Ptychosperma macarthurii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pupalia lappacea (L.) Juss. replace: Pupalia lappacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Radyera farragei (F.Muell.) Fryxell & S.H.Hashmi replace: Radyera farragei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Remusatia vivipara (Roxb.) Schott replace: Remusatia vivipara reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia eremaea Paul G.Wilson replace: Rhagodia eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia parabolica R.Br. replace: Rhagodia parabolica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia spinescens R.Br. replace: Rhagodia spinescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia australis A.J.Scott replace: Rhodamnia australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe charsleyae (F.Muell.) Paul G.Wilson replace: Rhodanthe charsleyae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe citrina (Benth.) Paul G.Wilson replace: Rhodanthe citrina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe floribunda (DC.) Paul G.Wilson replace: Rhodanthe floribunda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe laevis (A.Gray) Paul G.Wilson replace: Rhodanthe laevis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe microglossa (Maiden & Betche) Paul G.Wilson replace: Rhodanthe microglossa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe moschata (A.Cunn. ex DC.) Paul G.Wilson replace: Rhodanthe moschata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe stricta (Lindl.) Paul G.Wilson replace: Rhodanthe stricta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe tietkensii (F.Muell.) Paul G.Wilson replace: Rhodanthe tietkensii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhus taitensis Guill. replace: Rhus taitensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchosia australis Benth. replace: Rhynchosia australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchosia minima (L.) DC. replace: Rhynchosia minima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora brownii Roem. & Schult. replace: Rhynchospora brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora corymbosa (L.) Britton replace: Rhynchospora corymbosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora exserta C.B.Clarke replace: Rhynchospora exserta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora longisetis R.Br. replace: Rhynchospora longisetis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora pterochaeta F.Muell. replace: Rhynchospora pterochaeta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rinzia polystemona (F.Muell.) Rye replace: Rinzia polystemona reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex vesicarius L. replace: Rumex vesicarius reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rutidosis helichrysoides DC. subsp. helichrysoides replace: Rutidosis helichrysoides subsp. helichrysoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sacciolepis myosuroides (R.Br.) A.Camus replace: Sacciolepis myosuroides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sagina apetala Ard. replace: Sagina apetala reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salacia chinensis L. replace: Salacia chinensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus eremaeus S.W.L.Jacobs replace: Samolus eremaeus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Santalum acuminatum (R.Br.) DC. replace: Santalum acuminatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Santalum album L. replace: Santalum album reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Santalum lanceolatum R.Br. replace: Santalum lanceolatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcolobus hullsii (F.Muell. ex Benth.) P.I.Forst. replace: Sarcolobus hullsii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcolobus ritae P.I.Forst. replace: Sarcolobus ritae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus brunonis (S.Moore) Airy Shaw replace: Sauropus brunonis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus huntii (Ewart & O.B.Davies) Airy Shaw replace: Sauropus huntii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola amblyanthera F.Muell. var. centralis Carolin replace: Scaevola amblyanthera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola angulata R.Br. replace: Scaevola angulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola depauperata R.Br. replace: Scaevola depauperata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola glabrata Carolin replace: Scaevola glabrata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola parvibarbata Carolin replace: Scaevola parvibarbata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola parvifolia F.Muell. ex Benth. subsp. parvifolia replace: Scaevola parvifolia subsp. parvifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola spinescens R.Br. replace: Scaevola spinescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schefflera actinophylla (Endl.) Harms replace: Schefflera actinophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schenkia australis (R.Br.) G.Mans. replace: Schenkia australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schismus barbatus (L.) Juel replace: Schismus barbatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schizachyrium fragile (R.Br.) A.Camus replace: Schizachyrium fragile reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schizachyrium pseudeulalia (Hosok.) S.T.Blake replace: Schizachyrium pseudeulalia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schizaea dichotoma (L.) Sm. replace: Schizaea dichotoma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenia ayersii (F.Muell.) J.M.Black replace: Schoenia ayersii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenia cassiniana (Gaudich.) Steetz replace: Schoenia cassiniana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenia ramosissima (F.Muell.) Paul G.Wilson replace: Schoenia ramosissima reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenoplectiella dissachantha (S.T.Blake) Lye replace: Schoenoplectiella dissachantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenoplectiella laevis (S.T.Blake) Lye replace: Schoenoplectiella laevis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenoplectiella lateriflora (J.F.Gmel.) Lye replace: Schoenoplectiella lateriflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus punctatus R.Br. replace: Schoenus punctatus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sparteus R.Br. replace: Schoenus sparteus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoutenia ovata Korth. replace: Schoutenia ovata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria annularis Steud. replace: Scleria annularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria brownii Kunth replace: Scleria brownii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria ciliaris Nees replace: Scleria ciliaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria levis Retz. replace: Scleria levis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria lingulata C.B.Clarke replace: Scleria lingulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria lithosperma (L.) Sw. var. lithosperma replace: Scleria lithosperma var. lithosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scleria polycarpa Boeck. replace: Scleria polycarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria pygmaea R.Br. replace: Scleria pygmaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria rugosa R.Br. replace: Scleria rugosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sphacelata F.Muell. replace: Scleria sphacelata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria tricuspidata S.T.Blake replace: Scleria tricuspidata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena birchii (F.Muell.) Domin replace: Sclerolaena birchii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena convexula (R.H.Anderson) A.J.Scott replace: Sclerolaena convexula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena cornishiana (F.Muell.) A.J.Scott replace: Sclerolaena cornishiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena costata (R.H.Anderson) A.J.Scott replace: Sclerolaena costata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha (Nees) Benth. replace: Sclerolaena diacantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena johnsonii (Ising) A.J.Scott replace: Sclerolaena johnsonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Secamone elliptica R.Br. replace: Secamone elliptica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sedopsis filsonii (J.H.Willis) J.H.Willis replace: Sedopsis filsonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sehima nervosum (Rottler.) Stapf replace: Sehima nervosum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Selaginella ciliaris (Retz.) Spring replace: Selaginella ciliaris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Semecarpus australiensis Engl. replace: Semecarpus australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio gregorii F.Muell. replace: Senecio gregorii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio laceratus (F.Muell.) Belcher replace: Senecio laceratus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio lanibracteus I.Thomps. replace: Senecio lanibracteus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio magnificus F.Muell. replace: Senecio magnificus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. alicia Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. artemisioides replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. filifolia Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. helmsii (Symon) Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. oligophylla (F.Muell.) Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. petiolaris Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. quadrifolia Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides (DC.) Randell subsp. sturtii (R.Br.) Randell replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Senna artemisioides nothosubsp. artemisioides + replace: Senna artemisioides subsp. x artemisioides + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies +- find: Senna artemisioides nothosubsp. coriacea + replace: Senna artemisioides subsp. x coriacea + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies +- find: Senna artemisioides nothosubsp. sturtii + replace: Senna artemisioides subsp. x sturtii + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies +- find: Senna artemisioides subsp. petiolaris + replace: Senna artemisioides subsp. x petiolaris + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies - find: Senna glutinosa (DC.) Randell subsp. glutinosa replace: Senna glutinosa subsp. glutinosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa (DC.) Randell subsp. pruinosa (F.Muell.) Randell replace: Senna glutinosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna leptoclada (Benth.) Randell replace: Senna leptoclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna notabilis (F.Muell.) Randell replace: Senna notabilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna obtusifolia (L.) H.S.Irwin & Barneby replace: Senna obtusifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna occidentalis (L.) Link replace: Senna occidentalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna oligoclada (F.Muell.) Randell replace: Senna oligoclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna pleurocarpa (F.Muell.) Randell var. pleurocarpa replace: Senna pleurocarpa var. pleurocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senna sericea (Symon) Albr. & Symon replace: Senna sericea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna surattensis (Burm.f.) H.S.Irwin & Barneby replace: Senna surattensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna timoriensis (DC.) H.S.Irwin & Barneby replace: Senna timoriensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Seringia nephrosperma F.Muell. replace: Seringia nephrosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sersalisia sericea (Aiton) R.Br. replace: Sersalisia sericea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sesbania formosa (F.Muell.) N.T.Burb. replace: Sesbania formosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Setaria apiculata (Scribn. & Merr.) K.Schum. replace: Setaria apiculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Setaria surgens Stapf replace: Setaria surgens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Shonia bickertonensis (Specht) Halford & R.J.F.Hend. replace: Shonia bickertonensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida acuta Burm.f. replace: Sida acuta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida ammophila F.Muell. ex J.H.Willis replace: Sida ammophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida argillacea A.E.Holland & S.T.Reynolds replace: Sida argillacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida cordifolia L. replace: Sida cordifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida cunninghamii C.T.White replace: Sida cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida fibulifera Lindl. replace: Sida fibulifera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida filiformis A.Cunn. replace: Sida filiformis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida phaeotricha F.Muell. replace: Sida phaeotricha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida platycalyx F.Muell. ex Benth. replace: Sida platycalyx reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. pindan (B.G.Thomson 3398) replace: Sida sp. Pindan (B.G.Thomson 3398) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Siemssenia capillaris Steetz + replace: Podolepis capillaris + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Sigesbeckia australiensis D.L.Schulz replace: Sigesbeckia australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sisymbrium erysimoides Desf. replace: Sisymbrium erysimoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sisymbrium irio L. replace: Sisymbrium irio reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sisymbrium orientale L. replace: Sisymbrium orientale reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Smilax australis R.Br. replace: Smilax australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum asymmetriphyllum Specht replace: Solanum asymmetriphyllum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum carduiforme F.Muell. replace: Solanum carduiforme reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum centrale J.M.Black replace: Solanum centrale reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum chenopodinum F.Muell. replace: Solanum chenopodinum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum chippendalei Symon replace: Solanum chippendalei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum clarkiae Symon replace: Solanum clarkiae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum cleistogamum Symon replace: Solanum cleistogamum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum coactiliferum J.M.Black replace: Solanum coactiliferum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum cowiei Martine replace: Solanum cowiei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum eardleyae Symon replace: Solanum eardleyae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum echinatum R.Br. replace: Solanum echinatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum gilesii Symon replace: Solanum gilesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum lucani F.Muell. replace: Solanum lucani reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum nigrum L. replace: Solanum nigrum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum orbiculatum Dunal ex Poir. subsp. macrophyllum Symon replace: Solanum orbiculatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum orbiculatum Dunal ex Poir. subsp. orbiculatum replace: Solanum orbiculatum subsp. orbiculatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solanum petrophilum F.Muell. replace: Solanum petrophilum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum quadriloculatum F.Muell. replace: Solanum quadriloculatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum tetrandrum R.Br. replace: Solanum tetrandrum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum tumulicola Symon replace: Solanum tumulicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sonchus oleraceus L. replace: Sonchus oleraceus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sophora longipes Merr. replace: Sophora longipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum intrans F.Muell. ex Benth. replace: Sorghum intrans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum plumosum (R.Br.) P.Beauv. replace: Sorghum plumosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum timorense (Kunth) Buse in de Vriese replace: Sorghum timorense reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sowerbaea alliacea F.Muell. replace: Sowerbaea alliacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spathoglottis paulinae F.Muell. replace: Spathoglottis paulinae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce aequabilis Harwood replace: Spermacoce aequabilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce auriculata F.Muell. replace: Spermacoce auriculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce breviflora F.Muell. ex Benth. replace: Spermacoce breviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce dolichosperma Harwood replace: Spermacoce dolichosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce erectiloba Harwood replace: Spermacoce erectiloba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce leptoloba Benth. replace: Spermacoce leptoloba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce membranacea R.Br. ex Benth. replace: Spermacoce membranacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce stenophylla F.Muell. replace: Spermacoce stenophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphaerostephanos unitus (L.) Holttum var. unitus replace: Sphaerostephanos unitus var. unitus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sporobolus actinocladus (F.Muell.) F.Muell. replace: Sporobolus actinocladus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus australasicus Domin replace: Sporobolus australasicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus mitchellii (Trin.) C.E.Hubb. ex S.T.Blake replace: Sporobolus mitchellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus pulchellus R.Br. replace: Sporobolus pulchellus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus virginicus (L.) Kunth replace: Sporobolus virginicus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia clementii F.Muell. replace: Stackhousia clementii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia intermedia F.M.Bailey replace: Stackhousia intermedia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia megaloptera F.Muell. replace: Stackhousia megaloptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia florulenta W.R.Barker replace: Stemodia florulenta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia lythrifolia F.Muell. ex Benth. replace: Stemodia lythrifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia tephropelina W.R.Barker replace: Stemodia tephropelina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia viscosa Roxb. replace: Stemodia viscosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemona australiana (Benth.) C.H.Wright replace: Stemona australiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemona prostrata Telford replace: Stemona prostrata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenanthemum petraeum Rye replace: Stenanthemum petraeum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus acacioides F.Muell. replace: Stenocarpus acacioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus cunninghamii R.Br. replace: Stenocarpus cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus verticis Foreman replace: Stenocarpus verticis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenochlaena palustris (Burm.f.) Bedd. replace: Stenochlaena palustris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenopetalum anfractum E.A.Shaw replace: Stenopetalum anfractum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenopetalum decipiens E.A.Shaw replace: Stenopetalum decipiens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenopetalum lineare R.Br. ex DC. replace: Stenopetalum lineare reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenopetalum nutans F.Muell. replace: Stenopetalum nutans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenopetalum velutinum F.Muell. replace: Stenopetalum velutinum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenostegia congesta A.R.Bean replace: Stenostegia congesta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sterculia holtzei F.Muell. replace: Sterculia holtzei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sterculia quadrifida R.Br. replace: Sterculia quadrifida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sticherus flabellatus (R.Br.) St.John var. compactus (C.T.White & Goy) D.A.Sm. replace: Sticherus flabellatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stictocardia tiliifolia (Desr.) Hallier f. replace: Stictocardia tiliifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Streptoglossa adscendens (Benth.) Dunlop replace: Streptoglossa adscendens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Streptoglossa bubakii (Domin) Dunlop replace: Streptoglossa bubakii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Streptoglossa macrocephala (F.Muell.) Dunlop replace: Streptoglossa macrocephala reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Streptoglossa odora (F.Muell.) Dunlop replace: Streptoglossa odora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Striga curviflora (R.Br.) Benth. replace: Striga curviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Strychnos lucida R.Br. replace: Strychnos lucida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Strychnos minor Dennst. replace: Strychnos minor reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium desertorum Carlquist replace: Stylidium desertorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium fissilobum F.Muell. replace: Stylidium fissilobum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium multiscapum O.Schwarz replace: Stylidium multiscapum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium schizanthum F.Muell. replace: Stylidium schizanthum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Melville Island (R.J.Fensham 432) K.G.Brennan replace: Stylidium sp. [Stylidium sp. Melville Island (R.J.Fensham 432) K.G.Brennan; Nano_2011] @@ -8854,1334 +8838,1350 @@ taxonomic_updates: replace: Stylobasium spathulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylosanthes humilis Kunth replace: Stylosanthes humilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Suregada glomerulata (Blume) Baill. replace: Suregada glomerulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona affinis (A.T.Lee) Joy Thomps. replace: Swainsona affinis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona burkei F.Muell. ex Benth. replace: Swainsona burkei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona canescens (Benth.) F.Muell. replace: Swainsona canescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona colutoides F.Muell. replace: Swainsona colutoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona flavicarinata J.M.Black replace: Swainsona flavicarinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona phacoides Benth. replace: Swainsona phacoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synedrella nodiflora (L.) Gaertn. replace: Synedrella nodiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon ditassoides (Müll.Arg.) I.Telford & Pruesapan replace: Synostemon ditassoides reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon dunlopii (J.T.Hunter & J.J.Bruhl) I.Telford & Pruesapan replace: Synostemon dunlopii reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon filicinus (J.T.Hunter & J.J.Bruhl) I.Telford & Pruesapan replace: Synostemon filicinus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon glaucus F.Muell. replace: Synostemon glaucus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon gracilis (J.T.Hunter & J.J.Bruhl) I.Telford & Pruesapan replace: Synostemon gracilis reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon nitmiluk I.Telford & J.J.Bruhl replace: Synostemon nitmiluk reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon ochrophyllus (Benth.) I.Telford & Pruesapan replace: Synostemon ochrophyllus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon paucifolius (J.T.Hunter & J.J.Bruhl) I.Telford & J.J.Bruhl replace: Synostemon paucifolius reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon ramosissimus F.Muell. replace: Synostemon ramosissimus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon rigidulus (F.Muell. ex Müll.Arg.) I.Telford & Pruesapan replace: Synostemon rigidulus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon rimophilus (J.T.Hunter & J.J.Bruhl) I.Telford & Pruesapan replace: Synostemon rimophilus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon sp. Mann River (I.D.Cowie 8724) replace: Sauropus sp. Mann River (I.D.Cowie 8724) reason: Manual match to APC accepted name (E. Wenk, 2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synostemon trachyspermus (F.Muell.) I.Telford & Pruesapan replace: Synostemon trachyspermus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium angophoroides (F.Muell.) B.Hyland replace: Syzygium angophoroides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium arenitense Craven replace: Syzygium arenitense reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium armstrongii (Benth.) B.Hyland replace: Syzygium armstrongii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium claviflorum (Roxb.) Wall. ex Steud. replace: Syzygium claviflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium eucalyptoides (F.Muell.) B.Hyland subsp. bleeseri (O.Schwarz) B.Hyland replace: Syzygium eucalyptoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium eucalyptoides (F.Muell.) B.Hyland subsp. eucalyptoides replace: Syzygium eucalyptoides subsp. eucalyptoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium fibrosum (F.M.Bailey) Hartley & L.M.Perry replace: Syzygium fibrosum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium hemilamprum (F.Muell. ex F.M.Bailey) Craven & Biffin replace: Syzygium hemilamprum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium minutuliflorum (F.Muell.) B.Hyland replace: Syzygium minutuliflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium nervosum DC. replace: Syzygium nervosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium suborbiculare (Benth.) T.G.Hartley & L.M.Perry replace: Syzygium suborbiculare reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tabernaemontana orientalis R.Br. replace: Tabernaemontana orientalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tacca leontopetaloides (L.) Kuntze replace: Tacca leontopetaloides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tacca maculata Seem. replace: Tacca maculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taenitis blechnoides (Willd.) Sw. replace: Taenitis blechnoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Taenitis pinnata (J.Sm.) Houtt. replace: Taenitis pinnata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tamarindus indica L. replace: Tamarindus indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarenna dallachiana (F.Muell. ex Benth.) S.Moore subsp. expandens (F.Muell.) S.T.Reynolds & P.I.Forst. replace: Tarenna dallachiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarenna pentamera (Benth.) S.T.Reynolds replace: Tarenna pentamera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarennoidea wallichii (Hook.f.) Tirveng. & Sastre replace: Tarennoidea wallichii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tectaria siifolia (Willd.) Copel. replace: Tectaria siifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia indica (Willd) K.A.Sheph. & Paul G.Wilson subsp. bidens (Nees) K.A.Sheph. & Paul G.Wilson replace: Tecticornia indica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia verrucosa Paul G.Wilson replace: Tecticornia verrucosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Telmatoblechnum indicum (Burm.f.) Perrie, D.J.Ohlsen & Brownsey replace: Telmatoblechnum indicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Templetonia egena (F.Muell.) Benth. replace: Templetonia egena reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Templetonia hookeri (F.Muell.) Benth. replace: Templetonia hookeri reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia arnhemica C.T.White replace: Tephrosia arnhemica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia bifacialis Cowie replace: Tephrosia bifacialis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia brachycarpa F.Muell. ex Benth. replace: Tephrosia brachycarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia brachyodon Domin var. longifolia (Benth.) Domin replace: Tephrosia brachyodon reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia carriemichelliae Cowie replace: Tephrosia carriemichelliae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia conspicua W.Fitzg. replace: Tephrosia conspicua reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia coriacea Benth. replace: Tephrosia coriacea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia crocea Benth. replace: Tephrosia crocea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia delestangii Pedley replace: Tephrosia delestangii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia ephippioides Cowie replace: Tephrosia ephippioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia eriocarpa Benth. replace: Tephrosia eriocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia filipes Benth. replace: Tephrosia filipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia forrestiana F.Muell. replace: Tephrosia forrestiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia gyropoda Cowie replace: Tephrosia gyropoda reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia humifusa Cowie replace: Tephrosia humifusa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia insolens R.Butcher & Cowie + replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Tephrosia juncea R.Br. ex Benth. replace: Tephrosia juncea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia lamprolobioides F.Muell. replace: Tephrosia lamprolobioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia lasiochlaena Cowie replace: Tephrosia lasiochlaena reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia leptoclada Benth. replace: Tephrosia leptoclada reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia lithosperma R.Butcher & Cowie + replace: Tephrosia sp. Magazine Hill (P.Jones 365) + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Tephrosia macrocarpa Benth. replace: Tephrosia macrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia maculata Merr. & L.M.Perry replace: Tephrosia maculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia nana Kotschy ex Schweinf. replace: Tephrosia nana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia nematophylla F.Muell. replace: Tephrosia nematophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia oblongata R.Br. ex Benth. replace: Tephrosia oblongata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia oligophylla Benth. replace: Tephrosia oligophylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia phaeosperma F.Muell. ex Benth. replace: Tephrosia phaeosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia polyzyga F.Muell. ex Benth. replace: Tephrosia polyzyga reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia porrecta R.Br. ex Benth. replace: Tephrosia porrecta reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia procera Cowie replace: Tephrosia procera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia pumila (Lam.) Pers. replace: Tephrosia pumila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia remotiflora F.Muell. ex Benth. replace: Tephrosia remotiflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia reticulata Benth. replace: Tephrosia reticulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia simplicifolia F.Muell. ex Benth. replace: Tephrosia simplicifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) WA Herbarium replace: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) WA Herbarium replace: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kununurra (T.Handesyde Th00 250) Cowie & Butcher replace: Tephrosia sp. Kununurra (T.Handesyde TH00 250) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Pentecost River (I.D.Cowie 4168) I.D.Cowie replace: Tephrosia sp. Pentecost River (I.D.Cowie 4168) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. conduplicate (B.L.Rice 3139) I.D.Cowie replace: Tephrosia sp. Conduplicate (B.L.Rice 3139) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. dunes (J.R.Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia spechtii Pedley replace: Tephrosia spechtii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia stipuligera W.Fitzg. replace: Tephrosia stipuligera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia stuartii Benth. replace: Tephrosia stuartii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia subpectinata Domin replace: Tephrosia subpectinata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia valleculata Cowie replace: Tephrosia valleculata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia virens Pedley replace: Tephrosia virens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia arostrata Ewart & O.B.Davies replace: Terminalia arostrata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia canescens (DC.) Radlk. ex T.Durand replace: Terminalia canescens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia carpentariae C.T.White replace: Terminalia carpentariae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia catappa L. replace: Terminalia catappa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia erythrocarpa F.Muell. replace: Terminalia erythrocarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia ferdinandiana Exell replace: Terminalia ferdinandiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia grandiflora F.Muell. replace: Terminalia grandiflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia latipes Benth. replace: Terminalia latipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia microcarpa Decne. replace: Terminalia microcarpa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia platyphylla F.Muell. replace: Terminalia platyphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia platyptera F.Muell. replace: Terminalia platyptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia pterocarya F.Muell. replace: Terminalia pterocarya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia subacroptera Domin replace: Terminalia subacroptera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia volucris R.Br. ex Benth. replace: Terminalia volucris reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ternstroemia cherryi (F.M.Bailey) Merr. replace: Ternstroemia cherryi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium disjunctum K.R.Thiele & K.A.Sheph. replace: Teucrium disjunctum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium grandiusculum F.Muell. subsp. grandiusculum replace: Teucrium grandiusculum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium racemosum R.Br. replace: Teucrium racemosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium teucriiflorum (F.Muell.) Kattari & Salmaki replace: Teucrium teucriiflorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thaumastochloa major S.T.Blake replace: Thaumastochloa major reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda arguens (L.) Hack. replace: Themeda arguens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda avenacea (F.Muell.) Maiden & Betche replace: Themeda avenacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda triandra Forssk. replace: Themeda triandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thespesia populneoides (Roxb.) Kostel. replace: Thespesia populneoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thrixspermum congestum (F.M.Bailey) Dockrill replace: Thrixspermum congestum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene remota A.R.Bean replace: Thryptomene remota reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thunbergia arnhemica F.Muell. replace: Thunbergia arnhemica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyridolepis mitchelliana (Nees) S.T.Blake replace: Thyridolepis mitchelliana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyridolepis multiculmis (Pilg.) S.T.Blake replace: Thyridolepis multiculmis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyridolepis xerophila (Domin) S.T.Blake replace: Thyridolepis xerophila reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus banksii R.Br. replace: Thysanotus banksii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus exiliflorus F.Muell. replace: Thysanotus exiliflorus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tiliacora australiana Forman replace: Tiliacora australiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Timonius timon (Spreng.) Merr. replace: Timonius timon reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tinospora esiangkara (F.M.Bailey) Forman replace: Tinospora esiangkara reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tinospora smilacina Benth. replace: Tinospora smilacina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trachymene glaucifolia (F.Muell.) Benth. replace: Trachymene glaucifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trachymene rotundifolia (Benth.) Maconochie replace: Trachymene rotundifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tragia arnhemica P.I.Forst. replace: Tragia arnhemica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trema tomentosa (Roxb.) H.Hara var. aspera (Brogn.) Hewson replace: Trema tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema megaspermum A.M.Prescott replace: Trianthema megaspermum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema rhynchocalyptrum F.Muell. replace: Trianthema rhynchocalyptrum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema triquetrum Willd. replace: Trianthema triquetrum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis angustifolia R.Br. replace: Tribulopis angustifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis pentandra R.Br. replace: Tribulopis pentandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus astrocarpus F.Muell. replace: Tribulus astrocarpus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus eichlerianus K.L.Wilson replace: Tribulus eichlerianus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichodesma zeylanicum (Burm.f.) R.Br. var. zeylanicum replace: Trichodesma zeylanicum var. zeylanicum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trichosanthes cucumerina L. replace: Trichosanthes cucumerina reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichosanthes morrisii W.E.Cooper replace: Trichosanthes morrisii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichosanthes pilosa Lour. replace: Trichosanthes pilosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricostularia undulata (Thwaites) J.Kern replace: Tricostularia undulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triflorensia australis (Benth.) S.T.Reynolds replace: Triflorensia australis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia basedowii E.Pritz. replace: Triodia basedowii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia bitextura Lazarides replace: Triodia bitextura reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia brizoides N.T.Burb. replace: Triodia brizoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia bynoei (C.E.Hubb.) Lazarides replace: Triodia bynoei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia gracilis (Lazarides) Crisp & Mant replace: Triodia gracilis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia hubbardii N.T.Burb. replace: Triodia hubbardii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia intermedia Cheel replace: Triodia intermedia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia irritans R.Br. replace: Triodia irritans reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia longiceps J.M.Black replace: Triodia longiceps reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia melvillei (C.E.Hubb.) Lazarides replace: Triodia melvillei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia microstachya R.Br. replace: Triodia microstachya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia plectrachnoides N.T.Burb. replace: Triodia plectrachnoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia pungens R.Br. replace: Triodia pungens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia schinzii (Henrard) Lazarides replace: Triodia schinzii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia spicata N.T.Burb. replace: Triodia spicata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia stenostachya Domin replace: Triodia stenostachya reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tripogon loliiformis (F.Muell.) C.E.Hubb. + replace: Tripogonella loliiformis + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: species - find: Triraphis mollis R.Br. replace: Triraphis mollis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta albida (F.Muell. ex Domin) Halford replace: Triumfetta albida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta micracantha F.Muell. replace: Triumfetta micracantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta parviflora Benth. replace: Triumfetta parviflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta pentandra A.Rich. replace: Triumfetta pentandra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta rhomboidea Jacq. replace: Triumfetta rhomboidea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta ryeae Halford replace: Triumfetta ryeae reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sylvicola Halford replace: Triumfetta sylvicola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trophis scandens (Lour.) Hook. & Arn. subsp. scandens + replace: Malaisia scandens subsp. megacarpa + reason: Manual alignment to APC accepted name (E. Wenk, 2023-06-18) + taxonomic_resolution: subspecies - find: Tropidia territorialis D.L.Jones & M.A.Clem. replace: Tropidia territorialis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Turraea pubescens Hell. replace: Turraea pubescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typha domingensis Pers. replace: Typha domingensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium cochleare A.Hay replace: Typhonium cochleare reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium flagelliforme (Lodd.) Blume replace: Typhonium flagelliforme reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium liliifolium F.Muell. replace: Typhonium liliifolium reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uraria lagopodioides (L.) Desv. ex DC. replace: Uraria lagopodioides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urena lobata L. replace: Urena lobata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa gilesii (Benth.) Hughes var. gilesii replace: Urochloa gilesii var. gilesii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Urochloa mutica (Forssk.) T.Q.Nguyen replace: Urochloa mutica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa piligera (F.Muell. ex Benth.) R.D.Webster replace: Urochloa piligera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa polyphylla (R.Br.) R.D.Webster replace: Urochloa polyphylla reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa praetervisa (Domin) Hughes replace: Urochloa praetervisa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urochloa pubigera (Roem. & Schult.) R.D.Webster replace: Urochloa pubigera reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urtica urens L. replace: Urtica urens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utania racemosa (Jack ex Wall.) Sugumaran replace: Utania racemosa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia aurea Lour. replace: Utricularia aurea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia chrysantha R.Br. replace: Utricularia chrysantha reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia gibba L. replace: Utricularia gibba reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia lasiocaulis F.Muell. replace: Utricularia lasiocaulis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uvaria glabra Span. replace: Uvaria glabra reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uvaria holtzei F.Muell. replace: Uvaria holtzei reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uvaria rupestre (Jessup) L.L.Zhou, Y.C.F.Zu & R.M.K.Saunders replace: Uvaria rupestre reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vachellia farnesiana (L.) Wight & Arn. replace: Vachellia farnesiana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vachellia pachyphloia (W.Fitzg.) Kodela replace: Vachellia pachyphloia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vachellia pallidifolia (Tindale) Kodela replace: Vachellia pallidifolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vavaea amicorum Benth. replace: Vavaea amicorum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Velleia connata F.Muell. replace: Velleia connata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Velleia glabrata Carolin replace: Velleia glabrata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Velleia panduriformis A.Cunn. ex Benth. replace: Velleia panduriformis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ventilago viminalis Hook. replace: Ventilago viminalis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia cunninghamii Schauer replace: Verticordia cunninghamii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia decussata S.T.Blake ex Byrnes replace: Verticordia decussata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia verticillata Byrnes replace: Verticordia verticillata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna lanceolata Benth. var. latifolia C.T.White replace: Vigna lanceolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna radiata (L.) R.Wilczek var. sublobata (Roxb.) Verdc. replace: Vigna radiata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum carnosum (R.Br.) Benth. replace: Vincetoxicum carnosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum cinerascens (R.Br.) Meve & Liede replace: Vincetoxicum cinerascens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum erectum (F.Muell. ex Benth.) Kuntze replace: Vincetoxicum erectum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum flexuosum (R.Br.) Kuntze replace: Vincetoxicum flexuosum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum lineare (Decne.) Meve & Liede replace: Vincetoxicum lineare reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vincetoxicum polyanthum Kuntze replace: Vincetoxicum polyanthum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viscum articulatum Burm.f. replace: Viscum articulatum reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vitex acuminata R.Br. replace: Vitex acuminata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vitex glabrata R.Br. replace: Vitex glabrata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia arida N.T.Burb. replace: Vittadinia arida reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia dissecta (Benth.) N.T.Burb. var. hirta N.T.Burb. replace: Vittadinia dissecta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia eremaea N.T.Burb. replace: Vittadinia eremaea reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia virgata N.T.Burb. replace: Vittadinia virgata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittaria ensiformis Sw. replace: Vittaria ensiformis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia communis Carolin replace: Wahlenbergia communis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia queenslandica Carolin ex P.J.Sm. replace: Wahlenbergia queenslandica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia tumidifructa P.J.Sm. replace: Wahlenbergia tumidifructa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Waltheria indica L. replace: Waltheria indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Whiteochloa capillipes (Benth.) Lazarides replace: Whiteochloa capillipes reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wikstroemia indica (L.) C.A.Mey. replace: Wikstroemia indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wrightia pubescens R.Br. subsp. pubescens replace: Wrightia pubescens subsp. pubescens reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia saligna (R.Br.) F.Muell. ex Benth. replace: Wrightia saligna reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea deserticola T.D.Macfarl. replace: Wurmbea deserticola reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea thorntonii Tate replace: Xanthorrhoea thorntonii reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon eucalyptoides F.Muell. replace: Xanthostemon eucalyptoides reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon paradoxus F.Muell. replace: Xanthostemon paradoxus reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon psidioides (Lindl.) Peter Wilson & J.T.Waterh. replace: Xanthostemon psidioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon sp. Obiri Rock (J.A.Estbergs SN) replace: Xanthostemon sp. Obiri Rock (J.A.Estbergs s.n.) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon umbrosus (Lindl.) Peter Wilson & J.T.Waterh. replace: Xanthostemon umbrosus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xenostegia tridentata (L.) Austin & Staples replace: Xenostegia tridentata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochloa imberbis R.Br. replace: Xerochloa imberbis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochloa laniflora F.Muell. ex Benth. replace: Xerochloa laniflora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum boreale Paul G. Wilson replace: Xerochrysum boreale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ximenia americana L. replace: Ximenia americana reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylopia monosperma Jessup replace: Xylopia monosperma reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris complanata R.Br. replace: Xyris complanata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris indica L. replace: Xyris indica reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris pauciflora Willd. replace: Xyris pauciflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Yakirra australiensis (Domin) Lazarides & R.D.Webster var. australiensis replace: Yakirra australiensis var. australiensis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Yakirra majuscula (F.Muell. ex Benth.) Lazarides & R.D.Webster replace: Yakirra majuscula reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Yakirra pauciflora (R.Br.) Lazarides & R.D.Webster replace: Yakirra pauciflora reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zaleya galericulata (Melville) H.Eichler subsp. galericulata replace: Zaleya galericulata subsp. galericulata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Zeuxine oblonga R.S.Rogers & C.T.White replace: Zeuxine oblonga reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziziphus oenopolia (L.) Mill. replace: Ziziphus oenopolia reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziziphus quadrilocularis F.Muell. replace: Ziziphus quadrilocularis reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia areolata Mohlenbr. replace: Zornia areolata reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygochloa paradoxa (R.Br.) S.T.Blake replace: Zygochloa paradoxa reason: match_05. Automatic alignment with scientific name in APC accepted list (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum apiculatum F.Muell. replace: Zygophyllum apiculatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum compressum J.M.Black replace: Zygophyllum compressum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum crassissimum Ising replace: Zygophyllum crassissimum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum eichleri R.M.Barker replace: Zygophyllum eichleri reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum emarginatum H.Eichler replace: Zygophyllum emarginatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum eremaeum (Diels) Ostenf. replace: Zygophyllum eremaeum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum howittii F.Muell. replace: Zygophyllum howittii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum iodocarpum F.Muell. replace: Zygophyllum iodocarpum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum ovatum Ewart & Jean White replace: Zygophyllum ovatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum prismatothecum F.Muell. replace: Zygophyllum prismatothecum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum rowelliae R.M.Barker replace: Zygophyllum rowelliae reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum simile H.Eichler replace: Zygophyllum simile reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zygophyllum tesquorum J.M.Black replace: Zygophyllum tesquorum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-18) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Nicholson_2017/metadata.yml b/data/Nicholson_2017/metadata.yml index 0c12f385b..e981ee495 100644 --- a/data/Nicholson_2017/metadata.yml +++ b/data/Nicholson_2017/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( resprouting_percentage_by_severity = ifelse(is.na(severity), @@ -186,11 +186,11 @@ taxonomic_updates: - find: Hakea terrifolia replace: Hakea teretifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum squarrosa replace: Leptospermum squarrosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum- unidentified replace: Leptospermum sp. [Leptospermum- unidentified; Nicholson_2017] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) diff --git a/data/Nicolle_2006/metadata.yml b/data/Nicolle_2006/metadata.yml index b03afbe34..256f17ec7 100644 --- a/data/Nicolle_2006/metadata.yml +++ b/data/Nicolle_2006/metadata.yml @@ -53,7 +53,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(storage_organ = ifelse(regen_strategy %in% c("lignotuber","epicormic lignotuber"),"lignotuber",NA)) + custom_R_code: data %>% mutate(storage_organ = ifelse(regen_strategy %in% c("lignotuber","epicormic lignotuber"),"lignotuber",NA)) collection_date: 1992/2005 taxon_name: taxon description: A survey of regenerative strategies in the eucalypts, including lignotuber @@ -176,312 +176,202 @@ taxonomic_updates: replace: Angophora inopina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Angophora robur replace: Angophora robur reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia arafurica replace: Corymbia arafurica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia clandestina replace: Corymbia clandestina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia dallachiana replace: Corymbia dallachiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia dolichocarpa replace: Corymbia dolichocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia karelgica replace: Corymbia karelgica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia lenziana replace: Corymbia lenziana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Corymbia novoguinensis replace: Corymbia novoguinensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus aenea replace: Eucalyptus aenea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus ammophila replace: Eucalyptus ammophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus ancophila replace: Eucalyptus ancophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus beyeri replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus biterranea replace: Eucalyptus biterranea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus disclusa replace: Eucalyptus disclusa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus elegans replace: Eucalyptus elegans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus elliptica replace: Eucalyptus elliptica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus erosa replace: Eucalyptus erosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus farinosa replace: Eucalyptus farinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus fergusonii replace: Eucalyptus fergusonii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus fracta replace: Eucalyptus fracta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus gregoriensis replace: Eucalyptus gregoriensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus grisea replace: Eucalyptus grisea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus hypostomatica replace: Eucalyptus hypostomatica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus jimberlanica replace: Eucalyptus jimberlanica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus molyneuxii replace: Eucalyptus molyneuxii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus nebulosa replace: Eucalyptus nebulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus oblonga replace: Eucalyptus oblonga reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus paedoglauca replace: Eucalyptus paedoglauca reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus prominula replace: Eucalyptus prominula reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus reducta replace: Eucalyptus reducta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus sp. Truslove (Brooker 7499) replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus spectatrix replace: Eucalyptus spectatrix reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus tephroclada replace: Eucalyptus tephroclada reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus tholiformis replace: Eucalyptus tholiformis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus trachybasis replace: Eucalyptus trachybasis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus wimmerensis replace: Eucalyptus wimmerensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Eucalyptus yangoura replace: Eucalyptus yangoura reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Corymbia x chillagoensis]' - replace: Corymbia x chillagoensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Corymbia x opacula]' - replace: Corymbia x opacula - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Corymbia x pedimontana]' - replace: Corymbia x pedimontana - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x alpina]' - replace: Eucalyptus x alpina - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x balanites]' - replace: Eucalyptus x balanites - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x balanopelex]' - replace: Eucalyptus x balanopelex - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x bennettiae]' - replace: Eucalyptus x bennettiae - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x brachyphylla]' - replace: Eucalyptus x brachyphylla - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x carnabyi]' - replace: Eucalyptus x carnabyi - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x chrysantha]' - replace: Eucalyptus x chrysantha - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x conjuncta]' - replace: Eucalyptus x conjuncta - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x erythrandra]' - replace: Eucalyptus x erythrandra - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x graniticola]' - replace: Eucalyptus graniticola - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-12) - taxonomic_resolution: Species -- find: '[Eucalyptus x impensa]' - replace: Eucalyptus x impensa - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x intrasilvatica]' - replace: Eucalyptus x intrasilvatica - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x macmahonii]' - replace: Eucalyptus x macmahonii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x mcintyrensis]' - replace: Eucalyptus x mcintyrensis - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x oxypoma]' - replace: Eucalyptus x oxypoma - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x patentinervis]' - replace: Eucalyptus x patentinervis - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x phylacis]' - replace: Eucalyptus x phylacis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x studleyensis]' - replace: Eucalyptus x studleyensis - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species -- find: '[Eucalyptus x tetragona]' - replace: Eucalyptus x tetragona - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia grandifolia ?subsp. longa replace: Corymbia grandifolia subsp. longa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia sp. Prince Regent River (Barrett 3750 & Barrett) replace: Corymbia sp. Prince Regent River (R.L.Barrett & M.D.Barrett RLB 3750) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia x candida subsp. lautifolia replace: Corymbia x [Corymbia x candida subsp. lautifolia; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -510,16 +400,16 @@ taxonomic_updates: - find: Eucalyptus aridomontana replace: Eucalyptus aridimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aurifordina replace: Eucalyptus aurifodina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanopelex replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus binacag replace: Eucalyptus sp. [Eucalyptus binacag; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -529,127 +419,127 @@ taxonomic_updates: replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus caesia subsp. Southern rocks (Nicolle 3813 & French) replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus cloeziana subsp. cloeziana replace: Eucalyptus cloeziana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus cloeziana subsp. stannariensis replace: Eucalyptus cloeziana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus cunninghamii subsp. cunninghamii + taxonomic_resolution: species +- find: Eucalyptus cunninghamii subsp. Grose Valley (Nicolle 5868 ) replace: Eucalyptus cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus cunninghamii subsp. Grose Valley (Nicolle 5868 ) + taxonomic_resolution: species +- find: Eucalyptus cunninghamii subsp. cunninghamii replace: Eucalyptus cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus curtisii subsp. Curtisii replace: Eucalyptus curtisii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus curtisii subsp. Inland replace: Eucalyptus curtisii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dalrympleana subsp. Howmans Gap (Walsh 5293) replace: Eucalyptus dalrympleana subsp. Howmans Gap (N.G.Walsh 5293) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus dalrympleana subsp. Tasmania (Nicolle 4923) replace: Eucalyptus dalrympleana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus decipens replace: Eucalyptus decipiens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus decipies replace: Eucalyptus decipiens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus deglupta replace: Eucalyptus decepta reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus foecunda subsp. North (Nicolle 7322 & French) replace: Eucalyptus foecunda [Eucalyptus foecunda subsp. North (Nicolle 7322 & French)] reason: Manual match to species, ignoring infraspecific information (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus formanii subsp. Broad-leaf (Nicolle 5677 & French) replace: Eucalyptus formanii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus horistes subsp. horistes + taxonomic_resolution: species +- find: Eucalyptus horistes subsp. Southern smooth-bark (Nicolle 6916 & French) replace: Eucalyptus horistes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus horistes subsp. Southern smooth-bark (Nicolle 6916 & French) + taxonomic_resolution: species +- find: Eucalyptus horistes subsp. horistes replace: Eucalyptus horistes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus intertexta subsp. Central Australia (Nicolle 6661) replace: Eucalyptus intertexta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus intertexta subsp. intertexta replace: Eucalyptus intertexta var. intertexta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus lanepoolei replace: Eucalyptus lane-poolei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leptocalyx ?subsp. leptocalyx replace: Eucalyptus leptocalyx subsp. leptocalyx reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus leptocalyx ?subsp. petilipes replace: Eucalyptus leptocalyx subsp. petilipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus leptopoda subsp. Glaucous (Nicolle 7315 & French) replace: Eucalyptus leptopoda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus mannifera subsp. Alpine Victoria (Nicolle 2066) replace: Eucalyptus mannifera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata subsp. Dull leaf replace: Eucalyptus marginata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus moorei subsp. latiuscula ms replace: Eucalyptus moorei var. latiuscula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus orophila replace: Eucalyptus sp. [Eucalyptus orophila; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -659,62 +549,62 @@ taxonomic_updates: replace: Eucalyptus ovata var. grandiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus ovata subsp. ovata replace: Eucalyptus ovata var. ovata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus pachycalyx ?subsp. banyabba replace: Eucalyptus pachycalyx subsp. banyabba reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus pachycalyx ?subsp. pachycalyx replace: Eucalyptus pachycalyx subsp. pachycalyx reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus pachycalyx ?subsp. waajensis replace: Eucalyptus pachycalyx subsp. waajensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus perriniana subsp. Mainland (Nicolle 585) replace: Eucalyptus perriniana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus perriniana subsp. perriniana replace: Eucalyptus perriniana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus planipes subsp. Norseman (Nicolle 131) replace: Eucalyptus planipes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus planipes subsp. planipes replace: Eucalyptus planipes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus polita subsp. Blackbutt (Nicolle & French 3432) replace: Eucalyptus polita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus polita subsp. polita replace: Eucalyptus polita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus preissianasubsp. preissiana replace: Eucalyptus preissiana subsp. preissiana reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus rotunda replace: Eucalyptus sp. [Eucalyptus rotunda; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -724,7 +614,7 @@ taxonomic_updates: replace: Eucalyptus scias subsp. callimastha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sp. Adelaide (Nicolle 1364) replace: Eucalyptus sp. [Eucalyptus sp. Adelaide (Nicolle 1364); Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -749,31 +639,31 @@ taxonomic_updates: replace: Eucalyptus sp. Dartmoor (D.Nicolle & M.French DN 5585) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Dunbar Road (Nicolle 5466 & French) replace: Eucalyptus sp. Dunbar Road (D.Nicolle & M.French DN 5466) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Esperance (French 1579) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Esperance Plains (Nicolle 1089) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range (Nicolle 2157) replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Great Victoria Desert (Nicolle 3877 & French) replace: Eucalyptus sp. Great Victoria Desert (D.Nicolle & M.French DN 3877) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Gympie subsp. Gympie replace: Eucalyptus sp. [Eucalyptus sp. Gympie subsp. Gympie; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -788,7 +678,7 @@ taxonomic_updates: replace: Eucalyptus sp. Kalbarri (M.I.H.Brooker 7937) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Kitchener (Nicolle 6958 & French 6958) replace: Eucalyptus sp. [Eucalyptus sp. Kitchener (Nicolle 6958 & French 6958); Nicolle_2006] @@ -799,16 +689,16 @@ taxonomic_updates: replace: Eucalyptus sp. Lake Magenta (D.Nicolle & M.French DN 5509) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Little Sandy Desert (Nicolle 4304 & French) replace: Eucalyptus sp. Little Sandy Desert (D.Nicolle & M.French DN 4304) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Madura Beach (Nicolle 1570) replace: Eucalyptus sp. Madura Beach (D.Nicolle 1570) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Melville Island replace: Eucalyptus sp. [Eucalyptus sp. Melville Island; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -818,30 +708,30 @@ taxonomic_updates: replace: Eucalyptus sp. (Mt Garnet D.J.Carr+ 1672B) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mt Short (D.Nicolle & M.French DN 3575 ) replace: Eucalyptus sp. Mt Short (D.Nicolle & M.French DN 3575) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mukinbudin (D.Nicolle & M.French DN 3486 ) replace: Eucalyptus sp. Mukinbudin (D.Nicolle & M.French DN 3486) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mukinbudin (Nicolle 3486 & French) replace: Eucalyptus sp. Mukinbudin (D.Nicolle & M.French DN 3486) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Mulga Rock (Hill 2668 & Johnson) replace: Eucalyptus sp. Mulga Rock (K.D.Hill & L.A.S.Johnson KH 2668) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. North Balladonia (Nicolle & French 3620) replace: Eucalyptus sp. North Balladonia (D.Nicolle & M.French DN 3620) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Port Moresby (Darbyshire 601) replace: Eucalyptus sp. [Eucalyptus sp. Port Moresby (Darbyshire 601); Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -850,7 +740,7 @@ taxonomic_updates: - find: Eucalyptus sp. Queen Victoria Spring (Nicolle 524) replace: Eucalyptus sp. Queen Victoria Spring (D.Nicolle 524) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Quobba (Nicolle 1179) replace: Eucalyptus sp. [Eucalyptus sp. Quobba (Nicolle 1179); Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -860,7 +750,7 @@ taxonomic_updates: replace: Eucalyptus sp. Ravensthorpe (A.S.George 616) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. South Newdegate lakes (Nicolle & French 6021) replace: Eucalyptus sp. [Eucalyptus sp. South Newdegate lakes (Nicolle & French 6021); Nicolle_2006] @@ -871,12 +761,12 @@ taxonomic_updates: replace: Eucalyptus sp. Southern wheatbelt (D.Nicolle & M.French DN 5507) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Sullivan Soak (Nicolle 5503 & French) replace: Eucalyptus sp. Sullivan Soak (D.Nicolle & M.French DN 5503) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Warrumbungles replace: Eucalyptus sp. [Eucalyptus sp. Warrumbungles; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -886,7 +776,7 @@ taxonomic_updates: replace: Eucalyptus subangusta subsp. virescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus tasmaniensis replace: Eucalyptus sp. [Eucalyptus tasmaniensis; Nicolle_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -896,27 +786,27 @@ taxonomic_updates: replace: Eucalyptus tereticornis subsp. basaltica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus uncinata subsp. Mt Short (Nicolle 3575 & French ) replace: Eucalyptus uncinata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus uncinata subsp. uncinata replace: Eucalyptus uncinata var. uncinata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus viminalis ?subsp. Hentyensis replace: Eucalyptus viminalis subsp. hentyensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus viminalis ?subsp. Siliceana replace: Eucalyptus viminalis subsp. siliceana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus x abdita replace: Eucalyptus x [Eucalyptus x abdita; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -926,7 +816,7 @@ taxonomic_updates: replace: Eucalyptus ambigua reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x angularis replace: Eucalyptus x [Eucalyptus x angularis; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -946,7 +836,7 @@ taxonomic_updates: replace: Eucalyptus carolaniae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x castrensis replace: Eucalyptus x [Eucalyptus x castrensis; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -956,12 +846,12 @@ taxonomic_updates: replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x conveniens replace: Eucalyptus conveniens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x decipiens subsp. chalara replace: Eucalyptus x [Eucalyptus x decipiens subsp. chalara; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1019,7 +909,7 @@ taxonomic_updates: - find: Eucalyptus x walshii replace: Eucalyptus x wardii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x yarriambiack replace: Eucalyptus x [Eucalyptus x yarriambiack; Nicolle_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1034,6 +924,116 @@ taxonomic_updates: replace: Eucalyptus yumbarrana subsp. x striata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: '[Corymbia x chillagoensis]' + replace: Corymbia x chillagoensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Corymbia x opacula]' + replace: Corymbia x opacula + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Corymbia x pedimontana]' + replace: Corymbia x pedimontana + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x alpina]' + replace: Eucalyptus x alpina + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x balanites]' + replace: Eucalyptus x balanites + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x balanopelex]' + replace: Eucalyptus x balanopelex + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x bennettiae]' + replace: Eucalyptus x bennettiae + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x brachyphylla]' + replace: Eucalyptus x brachyphylla + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x carnabyi]' + replace: Eucalyptus x carnabyi + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x chrysantha]' + replace: Eucalyptus x chrysantha + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x conjuncta]' + replace: Eucalyptus x conjuncta + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x erythrandra]' + replace: Eucalyptus x erythrandra + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x graniticola]' + replace: Eucalyptus graniticola + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-12) + taxonomic_resolution: species +- find: '[Eucalyptus x impensa]' + replace: Eucalyptus x impensa + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x intrasilvatica]' + replace: Eucalyptus x intrasilvatica + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x macmahonii]' + replace: Eucalyptus x macmahonii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x mcintyrensis]' + replace: Eucalyptus x mcintyrensis + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x oxypoma]' + replace: Eucalyptus x oxypoma + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x patentinervis]' + replace: Eucalyptus x patentinervis + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x phylacis]' + replace: Eucalyptus x phylacis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x studleyensis]' + replace: Eucalyptus x studleyensis + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species +- find: '[Eucalyptus x tetragona]' + replace: Eucalyptus x tetragona + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Niinemets_2009/metadata.yml b/data/Niinemets_2009/metadata.yml index a80314844..45c1f36db 100644 --- a/data/Niinemets_2009/metadata.yml +++ b/data/Niinemets_2009/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(`N-fixing`), replace_duplicates_with_NA)) %>% @@ -497,11 +497,11 @@ traits: chlorophyll fluorescence yield in the light-adapted state, F, was estimated, and a single saturating pulse of white light of 6800-7000 lmol m-2 s-1 was applied to close all photosystem II centres and obtain the maximum fluorescence yield - Fm'. From these measurements, the effective quantum yield of photosystem II, - UPSII, was calculated as (Fm'-F)/Fm'. Upon completion of the A/Ci curve, the - light was switched off, and as soon as the chamber temperature and ambient CO2 - concentrations had stabilized, commonly 1-2 min after leaf darkening, the dark - respiration rate was recorded. + Fm'. From these measurements, the effective quantum yield of photosystem II, UPSII, + was calculated as (Fm'-F)/Fm'. Upon completion of the A/Ci curve, the light was + switched off, and as soon as the chamber temperature and ambient CO2 concentrations + had stabilized, commonly 1-2 min after leaf darkening, the dark respiration rate + was recorded. - var_in: Rd unit_in: neg_umol{CO2}/m2/s trait_name: leaf_dark_respiration_per_area @@ -520,11 +520,11 @@ traits: chlorophyll fluorescence yield in the light-adapted state, F, was estimated, and a single saturating pulse of white light of 6800-7000 lmol m-2 s-1 was applied to close all photosystem II centres and obtain the maximum fluorescence yield - Fm'. From these measurements, the effective quantum yield of photosystem II, - UPSII, was calculated as (Fm'-F)/Fm'. Upon completion of the A/Ci curve, the - light was switched off, and as soon as the chamber temperature and ambient CO2 - concentrations had stabilized, commonly 1-2 min after leaf darkening, the dark - respiration rate was recorded. + Fm'. From these measurements, the effective quantum yield of photosystem II, UPSII, + was calculated as (Fm'-F)/Fm'. Upon completion of the A/Ci curve, the light was + switched off, and as soon as the chamber temperature and ambient CO2 concentrations + had stabilized, commonly 1-2 min after leaf darkening, the dark respiration rate + was recorded. - var_in: Jmax/mass unit_in: umol/g/s trait_name: leaf_photosynthesis_Jmax_per_mass @@ -610,7 +610,7 @@ traits: was achieved 20 min to 2 h after leaf enclosure in the cuvette. After reaching the maximum stomatal conductance, steady-state values of net assimilation rates were measured at eight ambient CO2 concentrations between 50 lmol mol-1 and 2000 - lmol mol-1. + lmol mol-1. - var_in: Jmax/Vcmax unit_in: '{dimensionless}' trait_name: leaf_photosynthesis_Jmax_over_Vcmax_25C @@ -663,15 +663,15 @@ taxonomic_updates: - find: Araucaria bidwilii replace: Araucaria bidwillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotrichia floccosa replace: Astrotricha floccosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Agathis moorei, Cephalotaxus fortunei, Ginkgo biloba diff --git a/data/Nolan_2022/metadata.yml b/data/Nolan_2022/metadata.yml index 3ff1b37fe..993e15f32 100644 --- a/data/Nolan_2022/metadata.yml +++ b/data/Nolan_2022/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( individual_id = paste0(Species, "_", PlantRep), @@ -266,6 +266,6 @@ taxonomic_updates: - find: Eucalyptus sp. replace: Eucalyptus sp. [Nolan_2022] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/OReillyNugent_2018/metadata.yml b/data/OReillyNugent_2018/metadata.yml index f3b6a73a6..b2481efbd 100644 --- a/data/OReillyNugent_2018/metadata.yml +++ b/data/OReillyNugent_2018/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Caitlyn Baxter, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' max_dimensions <- data %>% mutate(replicate = 1) %>% diff --git a/data/Onoda_2010/metadata.yml b/data/Onoda_2010/metadata.yml index 1214edc01..b0fb63c8c 100644 --- a/data/Onoda_2010/metadata.yml +++ b/data/Onoda_2010/metadata.yml @@ -264,7 +264,7 @@ taxonomic_updates: replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: density of fresh stems; all values for entire stem (only sapwood diff --git a/data/Ooi_2007/metadata.yml b/data/Ooi_2007/metadata.yml index 897fd7cab..b2a31649b 100644 --- a/data/Ooi_2007/metadata.yml +++ b/data/Ooi_2007/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(`DATE OF COLLECTION` = `DATE OF COLLECTION` %>% dmy()) %>% group_by(SPECIES) %>% @@ -405,28 +405,28 @@ taxonomic_updates: replace: Acacia irrorata subsp. velutinella reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia asplenifolia replace: Banksia aspleniifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratopetalum Gummifera replace: Ceratopetalum gummiferum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus bancroftei replace: Eucalyptus bancroftii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus deosa var angustifolia replace: Eucalyptus oleosa var. angustifolia reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus macroryncha replace: Eucalyptus macrorhyncha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus pikata replace: Eucalyptus sp. [Eucalyptus pikata; Ooi_2007] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -435,30 +435,30 @@ taxonomic_updates: - find: Eucalytpus umbra replace: Eucalyptus umbra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes jasminioides replace: Gynochthodes jasminoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemadorum teretifolium replace: Haemodorum teretifolium reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea proprinqua replace: Hakea propinqua reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca quinquinerva replace: Melaleuca quinquenervia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platylobuim formosum replace: Platylobium formosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea scabra var scabra replace: Pultenaea scabra var. scabra reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Osborne_2014/metadata.yml b/data/Osborne_2014/metadata.yml index 0569c5fdd..b8b838fed 100644 --- a/data/Osborne_2014/metadata.yml +++ b/data/Osborne_2014/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% subset(is.na(excluded_names)) %>% mutate(basis_of_record = ifelse(species_name_current %in% c("Panicum incomtum", "Panicum bombycinum", "Panicum latzii", "Panicum chillagoanum", "Walwhalleya pungens"),"field","literature")) + custom_R_code: data %>% subset(is.na(excluded_names)) %>% mutate(basis_of_record = ifelse(species_name_current %in% c("Panicum incomtum", "Panicum bombycinum", "Panicum latzii", "Panicum chillagoanum", "Walwhalleya pungens"),"field","literature")) collection_date: unknown/2014 taxon_name: species_name_current description: grass trait data from various sources @@ -128,7 +128,7 @@ taxonomic_updates: - find: Aristida sp. replace: Aristida sp. [Osborne_2014] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Aristida sp. 2 replace: Aristida sp. [Aristida sp. 2; Osborne_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -137,27 +137,27 @@ taxonomic_updates: - find: Arthraxon castratu replace: Arthraxon castratus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa juncifolia subsp. Southern replace: Austrostipa juncifolia subsp. Southern River (B.J.Keighery 2160) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calyptochloa cylindropserma replace: Calyptochloa cylindrosperma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris macivorii replace: x Cynochloris macivorii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma popinensis replace: Rytidosperma popinense reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Pate_1990/metadata.yml b/data/Pate_1990/metadata.yml index 688a8fb61..87cacb9c2 100644 --- a/data/Pate_1990/metadata.yml +++ b/data/Pate_1990/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Mediterranean-type ecosystems in south-western Australia", @@ -248,23 +248,23 @@ taxonomic_updates: - find: Eremaea sp. replace: Eremaea sp. [Pate_1990] reason: Reword genus-level alignment to include dataset_id (E.Wenk, 2023-06-14) - taxonomic_resolution: Genus -- find: Leucopogon sp. - replace: Leucopogon sp. [Pate_1990] - reason: Reword genus-level alignment to include dataset_id (E.Wenk, 2023-06-14) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Gyrostemon sheathli replace: Gyrostemon sheathii reason: Align to APC accepted taxon (E.Wenk, 2023-06-14) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum ellipticum replace: Pericalymma ellipticum reason: Align to APC accepted taxon (E.Wenk, 2023-06-14) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. + replace: Leucopogon sp. [Pate_1990] + reason: Reword genus-level alignment to include dataset_id (E.Wenk, 2023-06-14) + taxonomic_resolution: genus - find: Phyllanthus crassifolius replace: Sauropus crassifolius reason: Align to APC accepted taxon (E.Wenk, 2023-06-14) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional traits: additional traits for future inclusion, root wood parenchyma diff --git a/data/Pate_1998/metadata.yml b/data/Pate_1998/metadata.yml index 644b13658..166ad2413 100644 --- a/data/Pate_1998/metadata.yml +++ b/data/Pate_1998/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Gillian Kowalick dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate( @@ -196,18 +196,6 @@ traits: herbaceous perennials, woody shrubs and trees. substitutions: .na taxonomic_updates: -- find: Brachycome sp. 1 - replace: Brachyscome sp. [Brachycome sp. 1; Pate_1998] - reason: Rewrite genus-level taxon name to include dataset_id (E. Wenk, 2023-06-22) - taxonomic_resolution: Genus -- find: Brachycome sp. 2 - replace: Brachyscome sp. [Brachycome sp. 1; Pate_1998] - reason: Rewrite genus-level taxon name to include dataset_id (E. Wenk, 2023-06-22) - taxonomic_resolution: Genus -- find: S.artemisioides subsp. Oligophylla - replace: Senna artemisioides subsp. oligophylla - reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) - taxonomic_resolution: Species - find: Abutilon sp. replace: Abutilon sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -216,21 +204,21 @@ taxonomic_updates: - find: Acacia farnesii replace: Acacia farnesiana reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia quadrimarginata replace: Acacia quadrimarginea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. 3 replace: Acacia sp. [Acacia sp. 3; Pate_1998] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2023-06-22) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia sp. 4 replace: Acacia sp. [Acacia sp. 4; Pate_1998] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2023-06-22) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Amaranthus sp. replace: Amaranthus sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -241,11 +229,27 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2023-06-22) taxonomic_resolution: genus +- find: Asteraceae + replace: Asteraceae sp. [Pate_1998] + reason: Rewrite family-level taxon name to include dataset_id (E. Wenk, 2023-06-22) + taxonomic_resolution: family +- find: Brachycome sp. 1 + replace: Brachyscome sp. [Brachycome sp. 1; Pate_1998] + reason: Rewrite genus-level taxon name to include dataset_id (E. Wenk, 2023-06-22) + taxonomic_resolution: genus +- find: Brachycome sp. 2 + replace: Brachyscome sp. [Brachycome sp. 1; Pate_1998] + reason: Rewrite genus-level taxon name to include dataset_id (E. Wenk, 2023-06-22) + taxonomic_resolution: genus - find: Calandrinia sp. replace: Calandrinia sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2023-06-22) taxonomic_resolution: genus +- find: Chenopodiaceae + replace: Chenopodiaceae sp. [Pate_1998] + reason: Rewrite family-level taxon name to include dataset_id (E. Wenk, 2023-06-22) + taxonomic_resolution: family - find: Comesperma sp. replace: Comesperma sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -264,25 +268,25 @@ taxonomic_updates: - find: Eremophila bomanii replace: Eremophila bowmanii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila latrobel replace: Eremophila latrobei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. 2 replace: Eremophila sp. [Eremophila sp. 2; Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2023-06-22) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eremophila sp. 3 replace: Eremophila sp. [Eremophila sp. 3; Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2023-06-22) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Erodium botyris replace: Erodium botrys reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia sp. replace: Jacksonia sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -291,38 +295,34 @@ taxonomic_updates: - find: Maireana camosa replace: Maireana carnosa reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana sp. replace: Nicotiana sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2023-06-22) taxonomic_resolution: genus +- find: S.artemisioides subsp. Oligophylla + replace: Senna artemisioides subsp. oligophylla + reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) + taxonomic_resolution: species - find: Senna artemisioides subsp. Artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. Circinnata replace: Senna artemisioides subsp. circinnata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna desolata replace: Cassia desolata reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna nemophila replace: Cassia nemophila reason: Align to APC accepted taxon name (E. Wenk, 2023-06-22) - taxonomic_resolution: Species -- find: Asteraceae - replace: Asteraceae sp. [Pate_1998] - reason: Rewrite family-level taxon name to include dataset_id (E. Wenk, 2023-06-22) - taxonomic_resolution: Family -- find: Chenopodiaceae - replace: Chenopodiaceae sp. [Pate_1998] - reason: Rewrite family-level taxon name to include dataset_id (E. Wenk, 2023-06-22) - taxonomic_resolution: Family + taxonomic_resolution: species - find: Senna sp. 1 replace: Senna sp. [Senna sp. 1; Pate_1998] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -346,16 +346,16 @@ taxonomic_updates: - find: Solanum sp 1. replace: Solanum sp. 1 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp 2. replace: Solanum sp. 2 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp 3. replace: Solanum sp. 3 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. replace: Swainsona sp. [Pate_1998] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Peeters_2002/metadata.yml b/data/Peeters_2002/metadata.yml index c0e3cd525..ce28e012c 100644 --- a/data/Peeters_2002/metadata.yml +++ b/data/Peeters_2002/metadata.yml @@ -240,11 +240,11 @@ taxonomic_updates: - find: Pultenea muelleri replace: Pultenaea muelleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea weindorferi replace: Pultenaea weindorferi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: additional anatomical traits including, surface hair density, diff --git a/data/Pekin_2011/metadata.yml b/data/Pekin_2011/metadata.yml index 361da1d9c..c553fbe3f 100644 --- a/data/Pekin_2011/metadata.yml +++ b/data/Pekin_2011/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Collis", @@ -238,7 +238,7 @@ taxonomic_updates: replace: Marianthus sp. Walpole (A.R.Annels 277) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orchid sp. unknown 1 replace: Orchidaceae sp. [Orchid sp. unknown 1; Pekin_2011] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth @@ -262,7 +262,7 @@ taxonomic_updates: - find: Pterostylis vittatus replace: Pterostylis vittata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium aff. junceum replace: Stylidium sp. [Stylidium aff. junceum; Pekin_2011] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -281,10 +281,10 @@ taxonomic_updates: - find: Treemandra diffusa replace: Tremandra diffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Treemandra stelligera replace: Tremandra stelligera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Pfautsch_2016/metadata.yml b/data/Pfautsch_2016/metadata.yml index a40b5435f..545587fa5 100644 --- a/data/Pfautsch_2016/metadata.yml +++ b/data/Pfautsch_2016/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Gillian Kowalick, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' max_height <- data %>% select(species, tree_height, location) %>% group_by(species, location) %>% @@ -456,35 +456,45 @@ traits: (Forestor Vertex, Häglöf, Sweden). substitutions: .na taxonomic_updates: +- find: Eucalyptus delegatensis_Falls Creek + replace: Eucalyptus delegatensis + reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus globulus (bicostata) replace: Eucalyptus globulus subsp. bicostata reason: Automatic alignment with name in APC list (accepted) (2021-12-23) + taxonomic_resolution: subspecies - find: Eucalyptus macroryncha replace: Eucalyptus macrorhyncha reason: Automatic alignment with name in APC list (accepted) (2021-12-23) + taxonomic_resolution: species - find: Eucalyptus melliodora_Tiger Hill replace: Eucalyptus melliodora reason: Removing site name attached to species name. + taxonomic_resolution: species +- find: Eucalyptus obliqua_Creswick + replace: Eucalyptus obliqua + reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus pauciflora_Falls Creek replace: Eucalyptus pauciflora reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus polyanthemos_Tiger Hill replace: Eucalyptus polyanthemos reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus regnans_Otway Ranges replace: Eucalyptus regnans reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus salmonophloia_Kalgoorlie replace: Eucalyptus salmonophloia reason: Removing site name attached to species name. -- find: Eucalyptus delegatensis_Falls Creek - replace: Eucalyptus delegatensis - reason: Removing site name attached to species name. -- find: Eucalyptus obliqua_Creswick - replace: Eucalyptus obliqua - reason: Removing site name attached to species name. + taxonomic_resolution: species - find: Eucalyptus viminalis_Creswick replace: Eucalyptus viminalis reason: Removing site name attached to species name. + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Pickering_2014/metadata.yml b/data/Pickering_2014/metadata.yml index 18aaf20fb..3e2d1766b 100644 --- a/data/Pickering_2014/metadata.yml +++ b/data/Pickering_2014/metadata.yml @@ -42,7 +42,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(across(c("LDMC (mg/g-1)"),~na_if(.x, 0))) %>% group_by(Species) %>% @@ -474,83 +474,83 @@ substitutions: find: '1269.214394' replace: .na taxonomic_updates: -- find: Acaena sp. - replace: Acaena sp. [Pickering_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acaena sp. + replace: Acaena sp. [Pickering_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Agrostis mulleriana dwarf form replace: Agrostis muelleriana reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome sp. (aff. tadgellii) replace: Brachyscome sp. aff. tadgellii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachysome spatulatha subsp. spathulata replace: Brachyscome spathulata subsp. spathulata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachysome stolonifera replace: Brachyscome stolonifera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine lilacina s.l. replace: Cardamine lilacina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris microphylla s.l. replace: Epacris microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron bellidiodes replace: Erigeron bellidioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia collina subs.glacialis replace: Euphrasia collina subsp. glacialis reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Euphrasia collina var. diversicolor replace: Euphrasia collina subsp. diversicolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Euphrasia collina var. lapidosa replace: Euphrasia collina subsp. lapidosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Geranium potentilloides var. replace: Geranium potentilloides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isolepsis aucklandica replace: Isolepis aucklandica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isolepsis crassiuscula replace: Isolepis crassiuscula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isolepsis montivaga replace: Isolepis montivaga reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptorhynchos squamatus s.l. replace: Leptorhynchos squamatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus sp. (Hymenanthera auct.) replace: Melicytus sp. [Melicytus sp. (Hymenanthera auct.); Pickering_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -560,15 +560,15 @@ taxonomic_updates: replace: Pratia surrepens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ranunculus anenonemous replace: Ranunculus anemoneus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia pulvinarus replace: Stackhousia pulvinaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. (aff. graminifolium) replace: Stylidium sp. [Stylidium sp. (aff. graminifolium); Pickering_2014] reason: match_09. Rewording taxon with term `affinis` preceding species epithet diff --git a/data/Pickup_2002/metadata.yml b/data/Pickup_2002/metadata.yml index 3aef7a26f..6f8f1d7e9 100644 --- a/data/Pickup_2002/metadata.yml +++ b/data/Pickup_2002/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Kuringgai National Park", diff --git a/data/Pickup_2005/metadata.yml b/data/Pickup_2005/metadata.yml index bdccf3a6d..9fbf5aede 100644 --- a/data/Pickup_2005/metadata.yml +++ b/data/Pickup_2005/metadata.yml @@ -193,32 +193,33 @@ traits: basis_of_value: measurement replicates: 4 method_context: 10mm2 stem cross-sectional area - methods: Huber value calculated as the ratio of a stem's leaf area to its water conductive area. Leaf area was determined for a shoot whose sapwood had a cross sectional - area of 10 mm2. In detail, while initial data were collected in terms of aggregate (or whole) stem - cross-sectional areas, we subsequently decided to use the conductive tissue cross-section - (excluding bark and pith) as a reference diameter. To determine the cross-sectional - area of the aggregate (or whole) stem where the cross-section of the conductive - tissue was 5, 10, 15, 20 and 30 mm 2 for each species, a ratio of the aggregate - stem cross-sectional area to the conductive stem cross-sectional area was measured - as follows for each species in the low-nutrient, high-rainfall site. For four - individuals per species, two sections of stem 20-30 mm in length, one 3-5 mm and - the second 6-8 mm in diameter, were randomly sampled from an actively growing - shoot in the upper canopy. Long and short diameters were used to calculate the - aggregate cross-sectional area. The stem was then dissected along the vascular - cambium and the cross-sectional area of the water-conductive tissue was similarly - calculated. Water-conductive tissue was identified as the portion of the stem - remaining after dissection along the vascular cambium and removal of the bark - (phloem, cortex and epidermis). Examining stained cross-sections of the stem under - a light microscope substantiated identification of water-conductive tissue. (Hereafter, - the term conductive tissue refers to the water-conductive tissue.) This resulted - in two ratios of aggregate to conductive stem cross-sectional area, one at ~10 - mm 2 and the second at ~25 mm 2 . This was done to account for changes in the - proportion of conductive and non-conductive tissue along the stem. The first ratio - was used to calculate variables at 5, 10 and 15 mm 2 of conductive tissue, and - the second ratio was applied at 20 and 30 mm 2 . Average aggregate cross-sectional - area of the stem where the conductive tissue was 10 mm 2 ranged from 11.3 mm 2 - in Epacris pulchella , which had the thinnest bark, to 18.9 mm 2 in Angophora - costata , which had the thickest. + methods: Huber value calculated as the ratio of a stem's leaf area to its water + conductive area. Leaf area was determined for a shoot whose sapwood had a cross + sectional area of 10 mm2. In detail, while initial data were collected in terms + of aggregate (or whole) stem cross-sectional areas, we subsequently decided to + use the conductive tissue cross-section (excluding bark and pith) as a reference + diameter. To determine the cross-sectional area of the aggregate (or whole) stem + where the cross-section of the conductive tissue was 5, 10, 15, 20 and 30 mm 2 + for each species, a ratio of the aggregate stem cross-sectional area to the conductive + stem cross-sectional area was measured as follows for each species in the low-nutrient, + high-rainfall site. For four individuals per species, two sections of stem 20-30 + mm in length, one 3-5 mm and the second 6-8 mm in diameter, were randomly sampled + from an actively growing shoot in the upper canopy. Long and short diameters were + used to calculate the aggregate cross-sectional area. The stem was then dissected + along the vascular cambium and the cross-sectional area of the water-conductive + tissue was similarly calculated. Water-conductive tissue was identified as the + portion of the stem remaining after dissection along the vascular cambium and + removal of the bark (phloem, cortex and epidermis). Examining stained cross-sections + of the stem under a light microscope substantiated identification of water-conductive + tissue. (Hereafter, the term conductive tissue refers to the water-conductive + tissue.) This resulted in two ratios of aggregate to conductive stem cross-sectional + area, one at ~10 mm 2 and the second at ~25 mm 2 . This was done to account for + changes in the proportion of conductive and non-conductive tissue along the stem. + The first ratio was used to calculate variables at 5, 10 and 15 mm 2 of conductive + tissue, and the second ratio was applied at 20 and 30 mm 2 . Average aggregate + cross-sectional area of the stem where the conductive tissue was 10 mm 2 ranged + from 11.3 mm 2 in Epacris pulchella , which had the thinnest bark, to 18.9 mm + 2 in Angophora costata , which had the thickest. - var_in: LASA50 unit_in: mm2{leaf}/mm2{sapwood} trait_name: huber_value @@ -227,32 +228,33 @@ traits: basis_of_value: measurement replicates: 4 method_context: 25mm2 stem cross-sectional area - methods: Huber value calculated as the ratio of a stem's leaf area to its water conductive area. Leaf area was determined for a shoot whose sapwood had a cross sectional - area of 25 mm2. In detail, while initial data were collected in terms of aggregate (or whole) stem - cross-sectional areas, we subsequently decided to use the conductive tissue cross-section - (excluding bark and pith) as a reference diameter. To determine the cross-sectional - area of the aggregate (or whole) stem where the cross-section of the conductive - tissue was 5, 10, 15, 20 and 30 mm 2 for each species, a ratio of the aggregate - stem cross-sectional area to the conductive stem cross-sectional area was measured - as follows for each species in the low-nutrient, high-rainfall site. For four - individuals per species, two sections of stem 20-30 mm in length, one 3-5 mm and - the second 6-8 mm in diameter, were randomly sampled from an actively growing - shoot in the upper canopy. Long and short diameters were used to calculate the - aggregate cross-sectional area. The stem was then dissected along the vascular - cambium and the cross-sectional area of the water-conductive tissue was similarly - calculated. Water-conductive tissue was identified as the portion of the stem - remaining after dissection along the vascular cambium and removal of the bark - (phloem, cortex and epidermis). Examining stained cross-sections of the stem under - a light microscope substantiated identification of water-conductive tissue. (Hereafter, - the term conductive tissue refers to the water-conductive tissue.) This resulted - in two ratios of aggregate to conductive stem cross-sectional area, one at ~10 - mm 2 and the second at ~25 mm 2 . This was done to account for changes in the - proportion of conductive and non-conductive tissue along the stem. The first ratio - was used to calculate variables at 5, 10 and 15 mm 2 of conductive tissue, and - the second ratio was applied at 20 and 30 mm 2 . Average aggregate cross-sectional - area of the stem where the conductive tissue was 10 mm 2 ranged from 11.3 mm 2 - in Epacris pulchella , which had the thinnest bark, to 18.9 mm 2 in Angophora - costata , which had the thickest. + methods: Huber value calculated as the ratio of a stem's leaf area to its water + conductive area. Leaf area was determined for a shoot whose sapwood had a cross + sectional area of 25 mm2. In detail, while initial data were collected in terms + of aggregate (or whole) stem cross-sectional areas, we subsequently decided to + use the conductive tissue cross-section (excluding bark and pith) as a reference + diameter. To determine the cross-sectional area of the aggregate (or whole) stem + where the cross-section of the conductive tissue was 5, 10, 15, 20 and 30 mm 2 + for each species, a ratio of the aggregate stem cross-sectional area to the conductive + stem cross-sectional area was measured as follows for each species in the low-nutrient, + high-rainfall site. For four individuals per species, two sections of stem 20-30 + mm in length, one 3-5 mm and the second 6-8 mm in diameter, were randomly sampled + from an actively growing shoot in the upper canopy. Long and short diameters were + used to calculate the aggregate cross-sectional area. The stem was then dissected + along the vascular cambium and the cross-sectional area of the water-conductive + tissue was similarly calculated. Water-conductive tissue was identified as the + portion of the stem remaining after dissection along the vascular cambium and + removal of the bark (phloem, cortex and epidermis). Examining stained cross-sections + of the stem under a light microscope substantiated identification of water-conductive + tissue. (Hereafter, the term conductive tissue refers to the water-conductive + tissue.) This resulted in two ratios of aggregate to conductive stem cross-sectional + area, one at ~10 mm 2 and the second at ~25 mm 2 . This was done to account for + changes in the proportion of conductive and non-conductive tissue along the stem. + The first ratio was used to calculate variables at 5, 10 and 15 mm 2 of conductive + tissue, and the second ratio was applied at 20 and 30 mm 2 . Average aggregate + cross-sectional area of the stem where the conductive tissue was 10 mm 2 ranged + from 11.3 mm 2 in Epacris pulchella , which had the thinnest bark, to 18.9 mm + 2 in Angophora costata , which had the thickest. - var_in: LASA250 unit_in: mm2{leaf}/mm2{sapwood} trait_name: huber_value @@ -261,42 +263,44 @@ traits: basis_of_value: measurement replicates: 4 method_context: 250mm long branch segment - methods: Huber value calculated as the ratio of a stem's leaf area to its water conductive area. Leaf area was determined for a 250 mm branch segment and sapwood - cross-sectional area was determined where the branch was cut. In detail, 'from Wright 2006; Leaf area and sapwood cross-sectional area were determined - for a 250 mm branch segment. In detail, No single best point exists to compare - traits such as LM/ SM, LA/SM and LA/SA when considering a set of species that - varies widely in canopy architecture and typical maximum height (here, approximately - 20 cm to 85 m). We have used several approaches (Table 1). In one study, we made - measurements on the terminal twigs of each species, i.e. on a relatively standard - developmental unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and - TRF, traits were measured at each of several different distances back down the - stem from the branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup - et al. 2005). At GHP, RHM and RHW, traits were measured at a standard sapwood - cross-sectional area (10 mm2; Pickup et al. 2005). For the present re-analysis, - we took the raw data from the previous studies and, for every species possible, - calculated patterns of leaf and stem deployment at two standard points, at 250 - mm distance from the branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, - Myall, TRF) or sapwood (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 - mm2 formulation denoted as subscript in trait abbreviations). This was done as - follows. For each individual plant, total leaf and stem dry mass at 250 mm distance - was estimated by straightline interpolation from values measured at the nearest - sampling points on either side of this distance. As the dry mass data tended to - display non-linear (power) relationships with distance from the branch tip, the - interpolated values were calculated from log10-log10- transformed data, then back-transformed - to the original scale. The same approach was used for interpolating data to the - standard stem (or sapwood) cross-sectional area. For individuals where measurements - had not been made on either side of the desired point but the nearest measurement - had been made within 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within - 10% of the desired point), we extrapolated (rather than interpolated) the measured - data to the standard point. This allowed us to include a number of individuals - and species for which interpolation was not possible. Still, several large-leaved, - large-stemmed species from the TRF site could not be included in the 10-mm2 crosssection - dataset. No unusual tendencies in analyses, including the extrapolated data, were - seen in comparison to analyses including interpolated data only (details not shown). - To illustrate how species'' morphology varied at the two standard sampling points, - species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm - distance from the branch tip, while the distance from the branch tip at which - stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' + methods: Huber value calculated as the ratio of a stem's leaf area to its water + conductive area. Leaf area was determined for a 250 mm branch segment and sapwood + cross-sectional area was determined where the branch was cut. In detail, 'from + Wright 2006; Leaf area and sapwood cross-sectional area were determined for a + 250 mm branch segment. In detail, No single best point exists to compare traits + such as LM/ SM, LA/SM and LA/SA when considering a set of species that varies + widely in canopy architecture and typical maximum height (here, approximately + 20 cm to 85 m). We have used several approaches (Table 1). In one study, we made + measurements on the terminal twigs of each species, i.e. on a relatively standard + developmental unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and + TRF, traits were measured at each of several different distances back down the + stem from the branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup + et al. 2005). At GHP, RHM and RHW, traits were measured at a standard sapwood + cross-sectional area (10 mm2; Pickup et al. 2005). For the present re-analysis, + we took the raw data from the previous studies and, for every species possible, + calculated patterns of leaf and stem deployment at two standard points, at 250 + mm distance from the branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, + Myall, TRF) or sapwood (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 + mm2 formulation denoted as subscript in trait abbreviations). This was done as + follows. For each individual plant, total leaf and stem dry mass at 250 mm distance + was estimated by straightline interpolation from values measured at the nearest + sampling points on either side of this distance. As the dry mass data tended to + display non-linear (power) relationships with distance from the branch tip, the + interpolated values were calculated from log10-log10- transformed data, then back-transformed + to the original scale. The same approach was used for interpolating data to the + standard stem (or sapwood) cross-sectional area. For individuals where measurements + had not been made on either side of the desired point but the nearest measurement + had been made within 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within + 10% of the desired point), we extrapolated (rather than interpolated) the measured + data to the standard point. This allowed us to include a number of individuals + and species for which interpolation was not possible. Still, several large-leaved, + large-stemmed species from the TRF site could not be included in the 10-mm2 crosssection + dataset. No unusual tendencies in analyses, including the extrapolated data, were + seen in comparison to analyses including interpolated data only (details not shown). + To illustrate how species'' morphology varied at the two standard sampling points, + species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm + distance from the branch tip, while the distance from the branch tip at which + stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' - var_in: LASA1000 unit_in: mm2{leaf}/mm2{sapwood} trait_name: huber_value @@ -305,54 +309,57 @@ traits: basis_of_value: measurement replicates: 4 method_context: 1000mm long branch segment - methods: Huber value calculated as the ratio of a stem's leaf area to its water conductive area, as details under method context. Leaf area was determined for a 1000 mm branch segment and sapwood - cross-sectional area was determined where the branch was cut. In detail, 'from Wright 2006; In detail, No single best point exists to compare - traits such as LM/ SM, LA/SM and LA/SA when considering a set of species that - varies widely in canopy architecture and typical maximum height (here, approximately - 20 cm to 85 m). We have used several approaches (Table 1). In one study, we made - measurements on the terminal twigs of each species, i.e. on a relatively standard - developmental unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and - TRF, traits were measured at each of several different distances back down the - stem from the branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup - et al. 2005). At GHP, RHM and RHW, traits were measured at a standard sapwood - cross-sectional area (10 mm2; Pickup et al. 2005). For the present re-analysis, - we took the raw data from the previous studies and, for every species possible, - calculated patterns of leaf and stem deployment at two standard points, at 250 - mm distance from the branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, - Myall, TRF) or sapwood (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 - mm2 formulation denoted as subscript in trait abbreviations). This was done as - follows. For each individual plant, total leaf and stem dry mass at 250 mm distance - was estimated by straightline interpolation from values measured at the nearest - sampling points on either side of this distance. As the dry mass data tended to - display non-linear (power) relationships with distance from the branch tip, the - interpolated values were calculated from log10-log10- transformed data, then back-transformed - to the original scale. The same approach was used for interpolating data to the - standard stem (or sapwood) cross-sectional area. For individuals where measurements - had not been made on either side of the desired point but the nearest measurement - had been made within 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within - 10% of the desired point), we extrapolated (rather than interpolated) the measured - data to the standard point. This allowed us to include a number of individuals - and species for which interpolation was not possible. Still, several large-leaved, - large-stemmed species from the TRF site could not be included in the 10-mm2 crosssection - dataset. No unusual tendencies in analyses, including the extrapolated data, were - seen in comparison to analyses including interpolated data only (details not shown). - To illustrate how species'' morphology varied at the two standard sampling points, - species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm - distance from the branch tip, while the distance from the branch tip at which - stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' + methods: Huber value calculated as the ratio of a stem's leaf area to its water + conductive area, as details under method context. Leaf area was determined for + a 1000 mm branch segment and sapwood cross-sectional area was determined where + the branch was cut. In detail, 'from Wright 2006; In detail, No single best point + exists to compare traits such as LM/ SM, LA/SM and LA/SA when considering a set + of species that varies widely in canopy architecture and typical maximum height + (here, approximately 20 cm to 85 m). We have used several approaches (Table 1). + In one study, we made measurements on the terminal twigs of each species, i.e. + on a relatively standard developmental unit (Westoby and Wright 2003). For species + at Ash, GLP, Myall and TRF, traits were measured at each of several different + distances back down the stem from the branch tip (Falster and Westoby 2005a, 2005b + and unpublished, Pickup et al. 2005). At GHP, RHM and RHW, traits were measured + at a standard sapwood cross-sectional area (10 mm2; Pickup et al. 2005). For the + present re-analysis, we took the raw data from the previous studies and, for every + species possible, calculated patterns of leaf and stem deployment at two standard + points, at 250 mm distance from the branch tip (Ash, GLP, Myall and TRF) and at + 10 mm2 stem (Ash, Myall, TRF) or sapwood (GHP, GLP, RHM, RHW) crosssectional area + (250 mm or 10 mm2 formulation denoted as subscript in trait abbreviations). This + was done as follows. For each individual plant, total leaf and stem dry mass at + 250 mm distance was estimated by straightline interpolation from values measured + at the nearest sampling points on either side of this distance. As the dry mass + data tended to display non-linear (power) relationships with distance from the + branch tip, the interpolated values were calculated from log10-log10- transformed + data, then back-transformed to the original scale. The same approach was used + for interpolating data to the standard stem (or sapwood) cross-sectional area. + For individuals where measurements had not been made on either side of the desired + point but the nearest measurement had been made within 25 mm of 250 mm or 1 mm2 + of 10 mm2 cross-section (i.e. within 10% of the desired point), we extrapolated + (rather than interpolated) the measured data to the standard point. This allowed + us to include a number of individuals and species for which interpolation was + not possible. Still, several large-leaved, large-stemmed species from the TRF + site could not be included in the 10-mm2 crosssection dataset. No unusual tendencies + in analyses, including the extrapolated data, were seen in comparison to analyses + including interpolated data only (details not shown). To illustrate how species'' + morphology varied at the two standard sampling points, species-mean stem cross-sectional + area varied between 1.2 and 258 mm2 at 250 mm distance from the branch tip, while + the distance from the branch tip at which stem cross-sectional area reached 10 + mm2 varied from 64 to 995 mm.' substitutions: .na taxonomic_updates: - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea rosmarinifolius replace: Pultenaea rosmarinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemesiodes replace: Senna artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Pirralho_2014/metadata.yml b/data/Pirralho_2014/metadata.yml index 894faebd9..f8a7f6584 100644 --- a/data/Pirralho_2014/metadata.yml +++ b/data/Pirralho_2014/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "University of Lisbon campus fields", diff --git a/data/Pollock_2012/metadata.yml b/data/Pollock_2012/metadata.yml index 47cfce644..93363d3c3 100644 --- a/data/Pollock_2012/metadata.yml +++ b/data/Pollock_2012/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(date_time = date_time %>% ymd_hms() %>% floor_date(unit = "day")) + custom_R_code: data %>% mutate(date_time = date_time %>% ymd_hms() %>% floor_date(unit = "day")) collection_date: date_time taxon_name: taxon location_name: locality_edited @@ -1571,12 +1571,12 @@ taxonomic_updates: replace: Eucalyptus goniocalyx reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leucoxylon subsp. (leucoxylon|pruinosa) replace: Eucalyptus leucoxylon reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: seed mass total, bark mass, stem volume, stem mass diff --git a/data/Pollock_2018/metadata.yml b/data/Pollock_2018/metadata.yml index dd39a9496..4eeb2b8e3 100644 --- a/data/Pollock_2018/metadata.yml +++ b/data/Pollock_2018/metadata.yml @@ -276,6 +276,6 @@ taxonomic_updates: replace: Eucalyptus socialis var. laurifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Prior_2003/metadata.yml b/data/Prior_2003/metadata.yml index 74cb624cf..8ac9d2687 100644 --- a/data/Prior_2003/metadata.yml +++ b/data/Prior_2003/metadata.yml @@ -37,7 +37,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( individual_id = paste(Species, Tree, sep = "_"), @@ -489,19 +489,19 @@ taxonomic_updates: - find: Planchonia careya A replace: Planchonia careya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonia careya C replace: Planchonia careya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia ferdinandiana A replace: Terminalia ferdinandiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia ferdinandiana C replace: Terminalia ferdinandiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: DBH increment diff --git a/data/Prior_2016/metadata.yml b/data/Prior_2016/metadata.yml index 64e498741..bca142208 100644 --- a/data/Prior_2016/metadata.yml +++ b/data/Prior_2016/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Epping Forest", diff --git a/data/Prior_2022/metadata.yml b/data/Prior_2022/metadata.yml index d071ba285..c603d64e6 100644 --- a/data/Prior_2022/metadata.yml +++ b/data/Prior_2022/metadata.yml @@ -110,11 +110,11 @@ dataset: being killed vs alive and as having/not having epicormic/basal sprouts following the fires. These data are linked to canopy scorch scores and DBH measurements for the individual trees. For inclusion in AusTraits the data have been manipulated - to provide population-level ("subplots") values, as our resprouting_capacity traits are - population or taxon level traits, not individual-level traits. An average scorch - value and DBH summary statistics (median, min, max) are retained as context properties. The raw data - file and the R code used to rework the data are archived in the raw data folder - within the GitHub data repository. + to provide population-level ("subplots") values, as our resprouting_capacity traits + are population or taxon level traits, not individual-level traits. An average + scorch value and DBH summary statistics (median, min, max) are retained as context + properties. The raw data file and the R code used to rework the data are archived + in the raw data folder within the GitHub data repository. locations: Arve: latitude (deg): -43.1028 diff --git a/data/Purdie_1976/metadata.yml b/data/Purdie_1976/metadata.yml index 2093872aa..e64017003 100644 --- a/data/Purdie_1976/metadata.yml +++ b/data/Purdie_1976/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location_name = "near Canberra", @@ -453,65 +453,65 @@ substitutions: find: unknown replace: .na taxonomic_updates: -- find: Poa sp. - replace: Poa sp. [Purdie_1976] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Prasophyllum sp. - replace: Prasophyllum sp. [Purdie_1976] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wahlenbergia sp. - replace: Wahlenbergia sp. [Purdie_1976] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Bromus mollis replace: Bromus hordeaceus reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conyza floribunda replace: Erigeron sumatrensis reason: Manual alignment to most likely name in APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crassula sieberana replace: Crassula sieberiana reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Danthonia pallida replace: Rytidosperma pallidum reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species -- find: Epilobium cinereum - replace: Epilobium billardiereanum subsp. cinereum - reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diurus maculata replace: Diuris maculata reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Epilobium cinereum + replace: Epilobium billardiereanum subsp. cinereum + reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) + taxonomic_resolution: species - find: Hydrocotyle replace: Hydrocotyle sp. [Hydrocotyle; Purdie_1976] reason: Manual alignment with genus name (E. Wenk 2023-05-17) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Leucopogon aff. fletcheri replace: Leucopogon fletcheri subsp. brevisepalus reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Linaria pelisserana replace: Linaria pelisseriana reason: Manual alignment with name currently accepted by APC (E. Wenk 2023-05-17) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa replace: Poa sp. [Poa; Purdie_1976] reason: Manual alignment with genus name (E. Wenk 2023-05-17) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Poa sp. + replace: Poa sp. [Purdie_1976] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Prasophyllum replace: Prasophyllum sp. [Prasophyllum; Purdie_1976] reason: Manual alignment with genus name (E. Wenk 2023-05-17) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Prasophyllum sp. + replace: Prasophyllum sp. [Purdie_1976] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Wahlenbergia replace: Wahlenbergia sp. [Wahlenbergia; Purdie_1976] reason: Manual alignment with genus name (E. Wenk 2023-05-17) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Wahlenbergia sp. + replace: Wahlenbergia sp. [Purdie_1976] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/RBGK_2014/metadata.yml b/data/RBGK_2014/metadata.yml index 1dd5d623e..c64dcb625 100644 --- a/data/RBGK_2014/metadata.yml +++ b/data/RBGK_2014/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(species) %>% mutate(observation_number = row_number()) %>% @@ -51,12 +51,12 @@ taxonomic_updates: - find: Athrotaxis laxifolia replace: Arthrotaxis laxifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus articulatus replace: Cyperus articulatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis aspera replace: Eragrostis sp. [Eragrostis aspera] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -66,31 +66,31 @@ taxonomic_updates: replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium muelleriferdinandi replace: Lepidium muelleri-ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora rugosa replace: Rhynchospora rubra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia doleiformis replace: Tecticornia doliiformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria oreocaena replace: Zieria oreocena reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Solanum scabrum, Chamaecrista nictitans, Solanum viarum diff --git a/data/RBGV_2022/metadata.yml b/data/RBGV_2022/metadata.yml index 75affa027..eea88867e 100644 --- a/data/RBGV_2022/metadata.yml +++ b/data/RBGV_2022/metadata.yml @@ -44,7 +44,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% mutate( @@ -158,15 +158,15 @@ taxonomic_updates: - find: Acacia xgrayana replace: Acacia x grayana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena xanserovina replace: Acaena x anserovina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena xovina replace: Acaena x ovina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anemone xhybrida replace: Anemone x [Anemone xhybrida; RBGV_2022] reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-22) @@ -175,28 +175,28 @@ taxonomic_updates: replace: Arisarum vulgare reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Betula aff. pubescens (Mt Macedon) replace: Betula sp. Mt Macedon (V.Stajsic 2545) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bromus catharticus var. catharticus replace: Bromus catharticus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bryophyllum xhoughtonii replace: Bryophyllum x houghtonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. aff. concolor (Violet Town) replace: Caladenia sp. [Caladenia sp. aff. concolor (Violet Town); RBGV_2022] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -210,53 +210,53 @@ taxonomic_updates: - find: Caladenia xvariabilis replace: Caladenia x variabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Castilleja exserta subsp. exserta replace: Castilleja exserta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centaurea xmoncktonii replace: Centaurea x moncktonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloglottis xpescottiana replace: Chiloglottis x pescottiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma x tadgellii replace: Coprosma xtadgelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma xtadgellii replace: Coprosma xtadgelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas xmiscellus replace: Corybas x miscellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cotoneaster xwatereri replace: Cotoneaster x watereri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crataegus xsinaica replace: Crataegus x sinaica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanothamnus anemonifolius replace: Cyanothamnus anethifolius reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanothamnus nanus var. nanus replace: Cyanothamnus nanus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella sp. aff. caerulea (West Gippsland) replace: Dianella sp. [Dianella sp. aff. caerulea (West Gippsland); RBGV_2022] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -265,16 +265,16 @@ taxonomic_updates: - find: Diuris xfastidiosa replace: Diuris x fastidiosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris xpalachila replace: Diuris x palachila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryopoa dives subsp. dives replace: Dryopoa dives reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echium pininana x Echium wildpretii replace: Echium x [Echium pininana x Echium wildpretii; RBGV_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -283,20 +283,20 @@ taxonomic_updates: - find: Ephedra distachya subsp. distachya replace: Ephedra distachya var. distachya reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus xmacmahonii replace: Eucalyptus x macmahonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gladiolus xcolvillei replace: Gladiolus x colvillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea arenaria subsp. arenaria replace: Grevillea arenaria subsp. arenaria reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Haworthia attenuata var. attenuata replace: Haworthia sp. [Haworthia attenuata var. attenuata; RBGV_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -306,40 +306,40 @@ taxonomic_updates: replace: Hydrocotyle sp. 1 (Byrock; Hj.Eichler 22868) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iris Louisiana hybrid replace: Iris Louisiana Hybrid Group reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus acutiflorus subsp. acutiflorus replace: Juncus acutiflorus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. (Scrubby form) replace: Kunzea sp. Scrubby form (K.R.Thiele 445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. (Upright form) replace: Kunzea sp. Upright form (M.G.Corrick 11564) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leontodon saxatilis subsp. saxatilis replace: Leontodon saxatilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucanthemum xsuperbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita var. citrata replace: Mentha sp. [Mentha xpiperita var. citrata; RBGV_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -348,71 +348,71 @@ taxonomic_updates: - find: Mentha xpiperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha xrotundifolia replace: Mentha x rotundifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Narcissus xincomparabilis replace: Narcissus x incomparabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana xflindersiensis replace: Nicotiana x flindersiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nymphaea xmarliacea replace: Nymphaea x marliacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Onopordum nervosum subsp. castellanum replace: Onopordum nervosum var. castellanum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Opuntia polyacantha var. erinacea replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ornithogalum thyrsoideus replace: Ornithogalum thyrsoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xasperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xdomesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xhortorum replace: Pelargonium x hortorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia xlucida replace: Persoonia x lucida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora subsp. sericea replace: Pimelea curviflora var. sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Plecostachys serpyllifolia replace: Plecostachys serpyllifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygonatum multiflorum replace: Polygonatum sp. [Polygonatum multiflorum; RBGV_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -421,52 +421,52 @@ taxonomic_updates: - find: Polypogon maritimus var. subspathaceus replace: Polypogon maritimus var. subspatheaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas -- find: Populus × Loch Valley (I.C.Clarke 2861) - replace: Populus x Loch Valley (I.C.Clarke 2861) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Populus nigra 'Italica' replace: Populus nigra var. italica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Populus xcanadensis replace: Populus x canadensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Populus xcanescens replace: Populus x canescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Populus yunnanensis replace: Populus aff. yunnanensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Populus × Loch Valley (I.C.Clarke 2861) + replace: Populus x Loch Valley (I.C.Clarke 2861) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: species - find: Prasophyllum aff. occidentale D replace: Prasophyllum sp. aff. occidentale D reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. aff. correctum (Mortlake) replace: Prasophyllum sp. Mortlake (J.A.Jeanes 1892) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. aff. boormanii (Beechworth) replace: Pterostylis sp. Beechworth (J.Galbraith s.n., MEL 2117497) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xaenigma replace: Pterostylis x aenigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xingens replace: Pterostylis x ingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis xtoveyana replace: Pterostylis x toveyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Roepera sessilifolia replace: Roepera sp. [Roepera sessilifolia; RBGV_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -475,72 +475,72 @@ taxonomic_updates: - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus xnovus replace: Rubus x novus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma aff. caespitosum (South-west swamps) replace: Rytidosperma sp. South-west Swamps (A.C.Beauglehole 22255) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x mollissima replace: Salix x mollisima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix xfragilis replace: Salix x fragilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix xmollissima replace: Salix x mollisima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix xpendulina replace: Salix x pendulina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix xreichardtii replace: Salix x reichardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix xsepulcralis replace: Salix x sepulcralis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvia africana-lutea replace: Salvia africana lutea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sedum xrubrotinctum replace: Sedum x rubrotinctum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solidago altissima var. altissima replace: Solidago altissima subsp. altissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sporobolus xtownsendii replace: Sporobolus sp. [Sporobolus xtownsendii; RBGV_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -549,35 +549,36 @@ taxonomic_updates: - find: Spyridium xramosissimum replace: Spyridium x ramosissimum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symphytum xuplandicum replace: Symphytum x uplandicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. (Connewarre) replace: Tecticornia sp. Connewarre (A.C.Beauglehole 70251) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ulmus xhollandica replace: Ulmus x hollandica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena xbrasiliensis replace: Verbena x brasiliensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola xzophodes replace: Viola x zophodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Yucca gloriosa var. recurvifolia replace: Yucca gloriosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name - find: Cyrtomium falcatum 'Rochfordii', Dicentra formosa subsp. formosa 'Alba', Dodonaea viscosa 'Purpurea', Grevillea 'Poorinda Constance', Salix matsudana 'Tortuosa' + find: Cyrtomium falcatum 'Rochfordii', Dicentra formosa subsp. formosa 'Alba', Dodonaea + viscosa 'Purpurea', Grevillea 'Poorinda Constance', Salix matsudana 'Tortuosa' reason: excluding cultivars questions: .na diff --git a/data/RBGV_2023/metadata.yml b/data/RBGV_2023/metadata.yml index 6c4fd0fa1..fcda4788d 100644 --- a/data/RBGV_2023/metadata.yml +++ b/data/RBGV_2023/metadata.yml @@ -44,7 +44,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -472,70 +472,30 @@ substitutions: find: oblanceolate obovate spathulate narrowly_spathulate replace: oblanceolate obovate spathulate taxonomic_updates: -- find: Echium pininana x Echium wildpretii - replace: Echium x [Echium pininana x Echium wildpretii; RBGV_2023] - reason: Manual match to Genus for hybrid (E. Wenk, 2023-05-24) - taxonomic_resolution: Genus -- find: Bryophyllum houghtonii - replace: Bryophyllum x houghtonii - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Caladenia variabilis - replace: Caladenia x variabilis - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Centaurea moncktonii - replace: Centaurea x moncktonii - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Chiloglottis pescottiana - replace: Chiloglottis x pescottiana - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Cotoneaster watereri - replace: Cotoneaster x watereri - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Crataegus sinaica - replace: Crataegus x sinaica - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Phelodia tutelata - replace: x Phelodia tutelata - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: X Phelodia tutelata - replace: x Phelodia tutelata +- find: Acacia grayana + replace: Acacia x grayana reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia xgrayana replace: Acacia x grayana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species -- find: Acacia grayana - replace: Acacia x grayana - reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena anserovina replace: Acaena x anserovina reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena ovina replace: Acaena x ovina reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena xanserovina replace: Acaena x anserovina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena xovina replace: Acaena x ovina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species -- find: Anemone xhybrida - replace: Anemone x [Anemone xhybrida; RBGV_2022] - reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-22) - taxonomic_resolution: genus + taxonomic_resolution: species - find: Anemone hybrida replace: Anemone x [Anemone hybrida; RBGV_2023] reason: Manual alignment to genus indicating hybrid taxon (E. Wenk, 2023-05-24) @@ -544,90 +504,118 @@ taxonomic_updates: replace: Anemone x [Anemone x hybrida; RBGV_2023] reason: Manual alignment to genus indicating hybrid taxon (E. Wenk, 2023-05-24) taxonomic_resolution: genus +- find: Anemone xhybrida + replace: Anemone x [Anemone xhybrida; RBGV_2022] + reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-22) + taxonomic_resolution: genus - find: Arisarum vulgare subsp. vulgare replace: Arisarum vulgare reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Betula aff. pubescens (Mt Macedon) replace: Betula sp. Mt Macedon (V.Stajsic 2545) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bromus catharticus var. catharticus replace: Bromus catharticus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Bryophyllum houghtonii + replace: Bryophyllum x houghtonii + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Bryophyllum xhoughtonii replace: Bryophyllum x houghtonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. aff. concolor (Violet Town) replace: Caladenia sp. Violet Town (C.Findlay & G.Backhouse s.n. 26/9/1999) reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. aff. fragrantissima (Central Victoria) replace: Caladenia sp. Mandurang (J.A.Jeanes 1728) reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Caladenia variabilis + replace: Caladenia x variabilis + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Caladenia xvariabilis replace: Caladenia x variabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Castilleja exserta subsp. exserta replace: Castilleja exserta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Centaurea moncktonii + replace: Centaurea x moncktonii + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Centaurea xmoncktonii replace: Centaurea x moncktonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Chiloglottis pescottiana + replace: Chiloglottis x pescottiana + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Chiloglottis xpescottiana replace: Chiloglottis x pescottiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma x tadgellii replace: Coprosma xtadgelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma xtadgellii replace: Coprosma xtadgelii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas miscellus replace: Corybas x miscellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cotoneaster watereri + replace: Cotoneaster x watereri + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Cotoneaster xwatereri replace: Cotoneaster x watereri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Crataegus sinaica + replace: Crataegus x sinaica + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Crataegus xsinaica replace: Crataegus x sinaica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanothamnus anemonifolius replace: Cyanothamnus anethifolius reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanothamnus nanus var. nanus replace: Cyanothamnus nanus reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella sp. aff. caerulea (West Gippsland) replace: Dianella sp. [Dianella sp. aff. caerulea (West Gippsland); RBGV_2022] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -636,278 +624,286 @@ taxonomic_updates: - find: Diuris fastidiosa replace: Diuris x fastidiosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris palachila replace: Diuris x palachila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryopoa dives subsp. dives replace: Dryopoa dives reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Echium pininana x Echium wildpretii + replace: Echium x [Echium pininana x Echium wildpretii; RBGV_2023] + reason: Manual match to Genus for hybrid (E. Wenk, 2023-05-24) + taxonomic_resolution: genus - find: Ephedra distachya subsp. distachya replace: Ephedra distachya var. distachya reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus macmahonii replace: Eucalyptus x macmahonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gladiolus colvillei replace: Gladiolus x colvillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea arenaria subsp. arenaria replace: Grevillea arenaria subsp. arenaria reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hydrocotyle sp. 1 replace: Hydrocotyle sp. 1 (Byrock; Hj.Eichler 22868) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Iris Louisiana hybrid replace: Iris Louisiana Hybrid Group reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus acutiflorus subsp. acutiflorus replace: Juncus acutiflorus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. (Scrubby form) replace: Kunzea sp. Scrubby form (K.R.Thiele 445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. (Upright form) replace: Kunzea sp. Upright form (M.G.Corrick 11564) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leontodon saxatilis subsp. saxatilis replace: Leontodon saxatilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucanthemum superbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha piperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species -- find: Mentha xpiperita var. citrata - replace: Mentha sp. [Mentha xpiperita var. citrata; RBGV_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus + taxonomic_resolution: species - find: Mentha piperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha rotundifolia replace: Mentha x rotundifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mentha xpiperita var. citrata + replace: Mentha sp. [Mentha xpiperita var. citrata; RBGV_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-22) + taxonomic_resolution: genus - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Narcissus incomparabilis replace: Narcissus x incomparabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nicotiana flindersiensis replace: Nicotiana x flindersiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nymphaea marliacea replace: Nymphaea x marliacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Onopordum nervosum subsp. castellanum replace: Onopordum nervosum var. castellanum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Opuntia polyacantha var. erinacea replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ornithogalum thyrsoideus replace: Ornithogalum thyrsoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium asperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium domesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium hortorum replace: Pelargonium x hortorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia lucida replace: Persoonia x lucida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Phelodia tutelata + replace: x Phelodia tutelata + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Pimelea curviflora subsp. sericea replace: Pimelea curviflora var. sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Plecostachys serpyllifolia replace: Plecostachys serpyllifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polypogon maritimus var. subspathaceus replace: Polypogon maritimus var. subspatheaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas -- find: Populus × Loch Valley (I.C.Clarke 2861) - replace: Populus x Loch Valley (I.C.Clarke 2861) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species -- find: Populus nigra 'Italica' - replace: Populus nigra var. italica - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Populus canadensis replace: Populus x canadensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Populus canescens replace: Populus x canescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Populus nigra 'Italica' + replace: Populus nigra var. italica + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-21) + taxonomic_resolution: varietas - find: Populus yunnanensis replace: Populus aff. yunnanensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Populus × Loch Valley (I.C.Clarke 2861) + replace: Populus x Loch Valley (I.C.Clarke 2861) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: species - find: Prasophyllum aff. occidentale D replace: Prasophyllum sp. aff. occidentale D reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. aff. correctum (Mortlake) replace: Prasophyllum sp. Mortlake (J.A.Jeanes 1892) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Pterostylis sp. aff. boormanii (Beechworth) - replace: Pterostylis sp. Beechworth (J.Galbraith s.n., MEL 2117497) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis aenigma replace: Pterostylis x aenigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis ingens replace: Pterostylis x ingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. aff. boormanii (Beechworth) + replace: Pterostylis sp. Beechworth (J.Galbraith s.n., MEL 2117497) + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) + taxonomic_resolution: species - find: Pterostylis toveyana replace: Pterostylis x toveyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus novus replace: Rubus x novus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma aff. caespitosum (South-west swamps) replace: Rytidosperma sp. South-west Swamps (A.C.Beauglehole 22255) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Salix x mollissima - replace: Salix x mollisima - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix fragilis replace: Salix x fragilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix mollissima replace: Salix x mollisima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix pendulina replace: Salix x pendulina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix reichardtii replace: Salix x reichardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix sepulcralis replace: Salix x sepulcralis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Salix x fragilis nothovar. fragilis + replace: Salix x fragilis L. nothovar. fragilis + reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species +- find: Salix x fragilis nothovar. furcata + replace: Salix x fragilis nothovar. furcata + reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species +- find: Salix x mollissima + replace: Salix x mollisima + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Salix x sepulcralis nothovar. chrysocoma replace: Salix x sepulcralis nothovar. chrysocoma reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salix x sepulcralis nothovar. sepulcralis replace: Salix x sepulcralis nothovar. sepulcralis reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Salix x fragilis nothovar. furcata - replace: Salix x fragilis nothovar. furcata - reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Salix x fragilis nothovar. fragilis - replace: Salix x fragilis L. nothovar. fragilis - reason: Manual alignment with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvia africana-lutea replace: Salvia africana lutea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia molesta replace: Salvinia x molesta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sedum rubrotinctum replace: Sedum x rubrotinctum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solidago altissima var. altissima replace: Solidago altissima subsp. altissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sporobolus townsendii replace: Sporobolus x townsendii reason: Manual alignment to accepted name, although not in APC (E. Wenk, 2023-05-24) @@ -915,33 +911,37 @@ taxonomic_updates: - find: Spyridium ramosissimum replace: Spyridium x ramosissimum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symphytum uplandicum replace: Symphytum x uplandicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. (Connewarre) replace: Tecticornia sp. Connewarre (A.C.Beauglehole 70251) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ulmus hollandica replace: Ulmus x hollandica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena brasiliensis replace: Verbena x brasiliensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola zophodes replace: Viola x zophodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: X Phelodia tutelata + replace: x Phelodia tutelata + reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Yucca gloriosa var. recurvifolia replace: Yucca gloriosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Cyrtomium falcatum 'Rochfordii', Dicentra formosa subsp. formosa 'Alba', Dodonaea diff --git a/data/Read_2003/metadata.yml b/data/Read_2003/metadata.yml index 14b90d602..ee367f3a4 100644 --- a/data/Read_2003/metadata.yml +++ b/data/Read_2003/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(`APC species`) %>% mutate(across(c("N-fixer","leaf"),replace_duplicates_with_NA)) %>% diff --git a/data/Read_2005/metadata.yml b/data/Read_2005/metadata.yml index 7a6f96c62..b7f4d3f85 100644 --- a/data/Read_2005/metadata.yml +++ b/data/Read_2005/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(`APC species`) %>% mutate(across(c(leaf),replace_duplicates_with_NA)) %>% @@ -242,6 +242,6 @@ taxonomic_updates: - find: Jacksonia sp. replace: Jacksonia sp. [Read_2005] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Reynolds_2018/metadata.yml b/data/Reynolds_2018/metadata.yml index 85e490a89..2f5bc5faa 100644 --- a/data/Reynolds_2018/metadata.yml +++ b/data/Reynolds_2018/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Caitlyn Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site_name = "University of Queensland") %>% group_by(Species) %>% diff --git a/data/Rice_1991/metadata.yml b/data/Rice_1991/metadata.yml index 02402b393..b9a83b5a8 100644 --- a/data/Rice_1991/metadata.yml +++ b/data/Rice_1991/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(plant_growth_substrate = NA_character_) %>% move_values_to_new_trait( @@ -70,11 +70,11 @@ taxonomic_updates: - find: Bonhamia pannosa replace: Bonamia pannosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamaeraphis hordacea replace: Chamaeraphis hordeacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria aff. replace: Crotalaria sp. [Crotalaria aff.; Rice_1991] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -83,7 +83,7 @@ taxonomic_updates: - find: Dimeria ornithipoda replace: Dimeria ornithopoda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum narrow replace: Haemodorum sp. [Haemodorum narrow; Rice_1991] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -92,27 +92,27 @@ taxonomic_updates: - find: Hemirrhena plantaginea replace: Hemiarrhena plantaginea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macarthuria aphylla replace: Macarthuria apetala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mimulus uvedalieae replace: Mimulus uvedaliae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platyzoma microphylla replace: Platyzoma microphyllum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pygmaeopremna sessifolia replace: Pygmaeopremna sessilifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia lectoplectra replace: Utricularia leptoplectra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia levis replace: Utricularia sp. [Utricularia levis; Rice_1991] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/Richards_2003/metadata.yml b/data/Richards_2003/metadata.yml index a05095c5d..2e2612897 100644 --- a/data/Richards_2003/metadata.yml +++ b/data/Richards_2003/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `Ni (mg/kg)` = stringr::str_replace(`Ni (mg/kg)`,"< ",""), diff --git a/data/Richards_2008/metadata.yml b/data/Richards_2008/metadata.yml index 7c449a39e..e322dcb41 100644 --- a/data/Richards_2008/metadata.yml +++ b/data/Richards_2008/metadata.yml @@ -227,7 +227,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(name_original) %>% mutate( @@ -1252,11 +1252,11 @@ taxonomic_updates: - find: Eucalyptus camadulensis replace: Eucalyptus camaldulensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus rossi replace: Eucalyptus rossii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: Birk_1992 - has all reported values for nutrient addition treatments diff --git a/data/Richards_2021/metadata.yml b/data/Richards_2021/metadata.yml index 64c575964..649173401 100644 --- a/data/Richards_2021/metadata.yml +++ b/data/Richards_2021/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( date = paste(day, month, year, sep = "-") %>% dmy(), @@ -518,12 +518,14 @@ taxonomic_updates: - find: Eucalpytus sp5 replace: Eucalyptus sp. [Eucalpytus sp5; Richards_2001] reason: Align to genus (E. Wenk 2023-05-04) + taxonomic_resolution: .na.character - find: Eucalyptus sp3 replace: Eucalyptus sp. [Eucalyptus sp3; Richards_2001] reason: Align to genus (E. Wenk 2023-05-04) + taxonomic_resolution: .na.character - find: Eucalyptus sp6 replace: Eucalyptus sp. [Eucalyptus sp6; Richards_2001] reason: Align to genus (E. Wenk 2023-05-04) - taxonomic_resolution: Genus + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Roberts_2006/metadata.yml b/data/Roberts_2006/metadata.yml index a420cf850..7764ca389 100644 --- a/data/Roberts_2006/metadata.yml +++ b/data/Roberts_2006/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Glassons Grassland Reserve") + custom_R_code: data %>% mutate(site_name = "Glassons Grassland Reserve") collection_date: 2006/2006 taxon_name: Scientific Name location_name: site_name @@ -55,6 +55,6 @@ taxonomic_updates: - find: Atriplex nummaularia replace: Atriplex nummularia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Roderick_1999/metadata.yml b/data/Roderick_1999/metadata.yml index 668adf3a7..bbe5ecd08 100644 --- a/data/Roderick_1999/metadata.yml +++ b/data/Roderick_1999/metadata.yml @@ -103,7 +103,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name_complete = paste(site_name_complete, `soil type`, sep = "_"), @@ -529,23 +529,23 @@ taxonomic_updates: - find: Anarcardium occidentale replace: Anacardium occidentale reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euc. behriana replace: Eucalyptus behriana reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus blakeyi replace: Eucalyptus blakelyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus focunda replace: Eucalyptus foecunda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leuc replace: Eucalyptus leucoxylon reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus spp. (various) replace: Eucalyptus sp. [Eucalyptus sp. (various); Roderick_1999] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -554,23 +554,23 @@ taxonomic_updates: - find: Gossypium hirstum replace: Gossypium hirsutum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea muellerana replace: Hakea muelleriana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hyperlaena fastigiata replace: Hypolaena fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypolanea fastigiata replace: Hypolaena fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidospermum semiteres replace: Lepidosperma semiteres reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus spp. replace: Schoenus sp. [Roderick_1999] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Roderick_2002/metadata.yml b/data/Roderick_2002/metadata.yml index cac703d26..0354fced0 100644 --- a/data/Roderick_2002/metadata.yml +++ b/data/Roderick_2002/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% select(-`Leaf No.`) %>% mutate( @@ -128,21 +128,21 @@ taxonomic_updates: replace: Callistemon viminalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ficifolia F. Muell. replace: Eucalyptus ficifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus pauciflora Sieber ex. Sprengel replace: Eucalyptus pauciflora reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melia azedarach L. var. australasica replace: Melia azedarach var. australasica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Rosell_2014/metadata.yml b/data/Rosell_2014/metadata.yml index 71d52a51a..768b179a9 100644 --- a/data/Rosell_2014/metadata.yml +++ b/data/Rosell_2014/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Species = stringr::str_replace(Species,"_"," "), diff --git a/data/Rumman_2018/metadata.yml b/data/Rumman_2018/metadata.yml index 89ddcd940..4f7002f5a 100644 --- a/data/Rumman_2018/metadata.yml +++ b/data/Rumman_2018/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Sophie Yang, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_D13C = str_extract(D13C_full, ".+(?=±)") %>% as.numeric(), @@ -287,7 +287,7 @@ taxonomic_updates: - find: Eucalyptus clelandii replace: Eucalyptus clelandiorum reason: Manual update to current APC-accepted name (E. Wenk 2023-05-03) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: question1: There are data for additional traits from Litchfield Savannah that AusTraits diff --git a/data/RussellSmith_2012/metadata.yml b/data/RussellSmith_2012/metadata.yml index eb0c67383..6260d9967 100644 --- a/data/RussellSmith_2012/metadata.yml +++ b/data/RussellSmith_2012/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% distinct() %>% mutate( @@ -57,8 +57,8 @@ locations: precipitation, MAP (mm): 200 to 2000 locality: Northern Territory description: tropical northern Australia to the arid south - notes: Our study region (11-26°S, 129-138°E) extends from the tropical north - of Australia, with strongly seasonal, annually reliable summer monsoonal rainfall + notes: Our study region (11-26°S, 129-138°E) extends from the tropical north of + Australia, with strongly seasonal, annually reliable summer monsoonal rainfall (MAR > 2000 mm), to the arid south, with slightly summer-dominant, decadally unreliable rainfall (MAR c. 200 mm). This climatic gradient supports mostly annually to biennially burnt savanna vegetation in the north, to sparse, infrequently @@ -94,19 +94,19 @@ traits: value_type: bin basis_of_value: expert_score replicates: .na - methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the - Northern Territory Herbarium database (accessed November 2009) were categorized - for their response to burning ('fire response'), time to first seed, and seedbank - longevity. Long-lived seeders and resprouters are referred to here as those taxa - that take at least 4 years until production of first seed. Initial time to first - seeding categorization comprised of ≤ 1 year, 2-3 years, 4-5 years, 6-10 years, - > 10 years. The database assembled for analysis comprised 1500 taxa attributed - for all three traits (Appendix S1 in Supporting Information). Species traits were - designated with reference to published literature and unpublished databases (New - South Wales Fire Response Database, R.A. Bradstock, University of Wollongong, - unpublished data; Northern Territory Ecological Response Database, J. Russell-Smith - et al., unpublished data). Relevant published observations for sclerophyll taxa, - while relatively scant, include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith + methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the Northern + Territory Herbarium database (accessed November 2009) were categorized for their + response to burning ('fire response'), time to first seed, and seedbank longevity. + Long-lived seeders and resprouters are referred to here as those taxa that take + at least 4 years until production of first seed. Initial time to first seeding + categorization comprised of ≤ 1 year, 2-3 years, 4-5 years, 6-10 years, > 10 years. + The database assembled for analysis comprised 1500 taxa attributed for all three + traits (Appendix S1 in Supporting Information). Species traits were designated + with reference to published literature and unpublished databases (New South Wales + Fire Response Database, R.A. Bradstock, University of Wollongong, unpublished + data; Northern Territory Ecological Response Database, J. Russell-Smith et al., + unpublished data). Relevant published observations for sclerophyll taxa, while + relatively scant, include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith et al. (1998, 2010), Yates & Russell-Smith (2003), Russell-Smith & Setterfield (2006), Latz (2007), Wright & Clarke (2007, 2009). More comprehensive accounts are available for rain forest taxa (Bowman, 1991; Russell-Smith & Lee, 1992; Russell-Smith @@ -127,14 +127,14 @@ traits: value_type: mode basis_of_value: expert_score replicates: .na - methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the - Northern Territory Herbarium database (accessed November 2009) were categorized - for their response to burning ('fire response'), time to first seed, and seedbank - longevity. Taxa included woody gymnosperms, monocotyledons (Arecaceae, and a small - number of other woody rain forest taxa), and dicotyledons excluding arborescent - mistletoes (Loranthaceae, Viscaceae - all seeders). Fire response categories comprised - seeders, resprouters and facultative resprouters, where the latter refers to taxa - that, following burning, behave as resprouters but also produce abundant germinants. + methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the Northern + Territory Herbarium database (accessed November 2009) were categorized for their + response to burning ('fire response'), time to first seed, and seedbank longevity. + Taxa included woody gymnosperms, monocotyledons (Arecaceae, and a small number + of other woody rain forest taxa), and dicotyledons excluding arborescent mistletoes + (Loranthaceae, Viscaceae - all seeders). Fire response categories comprised seeders, + resprouters and facultative resprouters, where the latter refers to taxa that, + following burning, behave as resprouters but also produce abundant germinants. Seeder taxa were defined as those where adults are typically killed after 100% scorch (sensuGill & Bradstock, 1992) by fires of at least moderate intensity (c. 1000-2500 kW m-1, sensuRussell-Smith & Edwards, 2006). For all analyses, we omitted @@ -168,23 +168,23 @@ traits: value_type: bin basis_of_value: expert_score replicates: .na - methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the - Northern Territory Herbarium database (accessed November 2009) were categorized - for their response to burning ('fire response'), time to first seed, and seedbank - longevity. Seedbank categories comprised short-lived (≤ 1 year) or longer-lived - (> 1 year), referred to hereafter as transient and persistent components, respectively. - The database assembled for analysis comprised 1500 taxa attributed for all three - traits (Appendix S1 in Supporting Information). Species traits were designated - with reference to published literature and unpublished databases (New South Wales - Fire Response Database, R.A. Bradstock, University of Wollongong, unpublished - data; Northern Territory Ecological Response Database, J. Russell-Smith et al., - unpublished data). Relevant published observations for sclerophyll taxa, while - relatively scant, include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith - et al. (1998, 2010), Yates & Russell-Smith (2003), Russell-Smith & Setterfield - (2006), Latz (2007), Wright & Clarke (2007, 2009). More comprehensive accounts - are available for rain forest taxa (Bowman, 1991; Russell-Smith & Lee, 1992; Russell-Smith - & Lucas, 1994; Russell-Smith, 1996; Russell-Smith et al., 1998; Russell-Smith - & Setterfield, 2006). The assembled database of attributes was thoroughly assessed + methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the Northern + Territory Herbarium database (accessed November 2009) were categorized for their + response to burning ('fire response'), time to first seed, and seedbank longevity. + Seedbank categories comprised short-lived (≤ 1 year) or longer-lived (> 1 year), + referred to hereafter as transient and persistent components, respectively. The + database assembled for analysis comprised 1500 taxa attributed for all three traits + (Appendix S1 in Supporting Information). Species traits were designated with reference + to published literature and unpublished databases (New South Wales Fire Response + Database, R.A. Bradstock, University of Wollongong, unpublished data; Northern + Territory Ecological Response Database, J. Russell-Smith et al., unpublished data). + Relevant published observations for sclerophyll taxa, while relatively scant, + include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith et al. (1998, + 2010), Yates & Russell-Smith (2003), Russell-Smith & Setterfield (2006), Latz + (2007), Wright & Clarke (2007, 2009). More comprehensive accounts are available + for rain forest taxa (Bowman, 1991; Russell-Smith & Lee, 1992; Russell-Smith & + Lucas, 1994; Russell-Smith, 1996; Russell-Smith et al., 1998; Russell-Smith & + Setterfield, 2006). The assembled database of attributes was thoroughly assessed and revised (over 6 years) by expert plant ecologists, including three contributing authors (J.R.-S., C.B., K.B.). At the outset, we acknowledge that populations of various taxa may exhibit some degree of variability (both genetic and environmental) @@ -203,23 +203,23 @@ traits: value_type: mode basis_of_value: expert_score replicates: .na - methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the - Northern Territory Herbarium database (accessed November 2009) were categorized - for their response to burning ('fire response'), time to first seed, and seedbank - longevity. Seedbank categories comprised short-lived (≤ 1 year) or longer-lived - (> 1 year), referred to hereafter as transient and persistent components, respectively. - The database assembled for analysis comprised 1500 taxa attributed for all three - traits (Appendix S1 in Supporting Information). Species traits were designated - with reference to published literature and unpublished databases (New South Wales - Fire Response Database, R.A. Bradstock, University of Wollongong, unpublished - data; Northern Territory Ecological Response Database, J. Russell-Smith et al., - unpublished data). Relevant published observations for sclerophyll taxa, while - relatively scant, include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith - et al. (1998, 2010), Yates & Russell-Smith (2003), Russell-Smith & Setterfield - (2006), Latz (2007), Wright & Clarke (2007, 2009). More comprehensive accounts - are available for rain forest taxa (Bowman, 1991; Russell-Smith & Lee, 1992; Russell-Smith - & Lucas, 1994; Russell-Smith, 1996; Russell-Smith et al., 1998; Russell-Smith - & Setterfield, 2006). The assembled database of attributes was thoroughly assessed + methods: Fire response attributes ^p Initially, 1873 woody plant taxa in the Northern + Territory Herbarium database (accessed November 2009) were categorized for their + response to burning ('fire response'), time to first seed, and seedbank longevity. + Seedbank categories comprised short-lived (≤ 1 year) or longer-lived (> 1 year), + referred to hereafter as transient and persistent components, respectively. The + database assembled for analysis comprised 1500 taxa attributed for all three traits + (Appendix S1 in Supporting Information). Species traits were designated with reference + to published literature and unpublished databases (New South Wales Fire Response + Database, R.A. Bradstock, University of Wollongong, unpublished data; Northern + Territory Ecological Response Database, J. Russell-Smith et al., unpublished data). + Relevant published observations for sclerophyll taxa, while relatively scant, + include Lacey & Whelan (1976), Setterfield (1997), Russell-Smith et al. (1998, + 2010), Yates & Russell-Smith (2003), Russell-Smith & Setterfield (2006), Latz + (2007), Wright & Clarke (2007, 2009). More comprehensive accounts are available + for rain forest taxa (Bowman, 1991; Russell-Smith & Lee, 1992; Russell-Smith & + Lucas, 1994; Russell-Smith, 1996; Russell-Smith et al., 1998; Russell-Smith & + Setterfield, 2006). The assembled database of attributes was thoroughly assessed and revised (over 6 years) by expert plant ecologists, including three contributing authors (J.R.-S., C.B., K.B.). At the outset, we acknowledge that populations of various taxa may exhibit some degree of variability (both genetic and environmental) @@ -267,201 +267,201 @@ taxonomic_updates: replace: Abutilon hannii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon indicum subsp. indeterminate replace: Abutilon indicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia aneura var. Bloods Range (D.J.Nelson 631) replace: Acacia aneura var. Bloods Range (D.J.Nelson 631) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia aneura var. indeterminate replace: Acacia aneura reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia colei var. indeterminate replace: Acacia colei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cyperophylla var. indeterminate replace: Acacia cyperophylla reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia drepanocarpa subsp. indeterminate replace: Acacia drepanocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia galioides var. indeterminate replace: Acacia galioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia galioides var. leioclada replace: Acacia galioides var. leioclada reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia macdonnellensis subsp. indeterminate replace: Acacia macdonnellensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia plectocarpa subsp. indeterminate replace: Acacia plectocarpa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ramulosa var. indeterminate replace: Acacia ramulosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia tumida var. indeterminate replace: Acacia tumida reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia victoriae subsp. indeterminate replace: Acacia victoriae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia wickhamii subsp. indeterminate replace: Acacia wickhamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atalaya sp. Elizabeth River (G.M.Wightman 6259) replace: Atalaya sp. Elizabeth River (G.M.Wightman 6259) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex vesicaria subsp. indeterminate replace: Atriplex vesicaria reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia grandisepala subsp. indeterminate replace: Boronia grandisepala reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton sp. Wangi (S.E.Pickering 20) replace: Brachychiton Wangi (S.E.Pickering 20) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cajanus reticulatus var. indeterminate replace: Cajanus reticulatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casuarina equisetifolia subsp. indeterminate replace: Casuarina equisetifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cleome uncifera subsp. indeterminate replace: Cleome uncifera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clerodendrum floribundum var. indeterminate replace: Clerodendrum floribundum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cochlospermum fraseri subsp. indeterminate replace: Cochlospermum fraseri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sericeus subsp. indeterminate replace: Corchorus sericeus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sidoides subsp. indeterminate replace: Corchorus sidoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia deserticola subsp. indeterminate replace: Corymbia deserticola reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia eremaea subsp. indeterminate replace: Corymbia eremaea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia ferruginea subsp. indeterminate replace: Corymbia ferruginea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia grandifolia subsp. indeterminate replace: Corymbia grandifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia pachycarpa subsp. glabrescens replace: Corymbia pachycarpa subsp. glabrescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia pachycarpa subsp. indeterminate replace: Corymbia pachycarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia papillosa subsp. papillosa replace: Corymbia papillosa subsp. papillosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia ptychocarpa subsp. indeterminate replace: Corymbia ptychocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corynotheca micrantha var. indeterminate replace: Corynotheca micrantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria cunninghamii subsp. indeterminate replace: Crotalaria cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria eremaea subsp. indeterminate replace: Crotalaria eremaea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria medicaginea var. indeterminate replace: Crotalaria medicaginea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria montana var. indeterminate replace: Crotalaria montana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria novae-hollandiae subsp. indeterminate replace: Crotalaria novae-hollandiae reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cycas armstrongii x conferta replace: Cycas x [Cycas armstrongii x conferta; RussellSmith_2014] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -481,568 +481,568 @@ taxonomic_updates: replace: Cycas canalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cycas maconochiei subsp. indeterminate replace: Cycas maconochiei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyclophyllum schultzii f. indeterminate replace: Cyclophyllum schultzii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis beveridgei subsp. indeterminate replace: Dicrastylis beveridgei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis costelloi var. eriantha replace: Dicrastylis costelloi var. eriantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi var. indeterminate replace: Dicrastylis costelloi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis exsuccosa subsp. exsuccosa replace: Dicrastylis exsuccosa subsp. exsuccosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis exsuccosa subsp. indeterminate replace: Dicrastylis exsuccosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis gilesii var. bagotensis replace: Dicrastylis gilesii f. bagotensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dicrastylis gilesii var. indeterminate replace: Dicrastylis gilesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis gilesii var. laxa replace: Dicrastylis gilesii var. laxa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Distichostemon hispidulus var. indeterminate replace: Distichostemon hispidulus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea lanceolata var. indeterminate replace: Dodonaea lanceolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa subsp. indeterminate replace: Dodonaea viscosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehretia saligna var. indeterminate replace: Ehretia saligna reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Einadia nutans subsp. indeterminate replace: Einadia nutans reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enchylaena tomentosa var. indeterminate replace: Enchylaena tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila gilesii var. gilesii replace: Eremophila gilesii subsp. gilesii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila latrobei subsp. indeterminate replace: Eremophila latrobei reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila platythamnos subsp. Mereeni (G.J.Leach 1184) replace: Eremophila platythamnos subsp. Mereeni (G.J.Leach 1184) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila sp. MacDonnell Ranges (M.J.A.Barritt 693) replace: Eremophila sp. Macdonnell Ranges (M.J.A.Barritt 693) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus apodophylla subsp. apodophylla replace: Eucalyptus apodophylla subsp. apodophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus apodophylla subsp. indeterminate replace: Eucalyptus apodophylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus helenae replace: Eucalyptus helenae reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus pruinosa subsp. indeterminate replace: Eucalyptus pruinosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia tannensis subsp. indeterminate replace: Euphorbia tannensis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus aculeata var. indeterminate replace: Ficus aculeata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus aculeata var. orbicularis replace: Ficus aculeata var. orbicularis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus virens var. indeterminate replace: Ficus virens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia ewartii subsp. indeterminate replace: Gardenia ewartii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia pyriformis subsp. indeterminate replace: Gardenia pyriformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gardenia resinosa subsp. indeterminate replace: Gardenia resinosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycosmis sapindoides replace: Glycosmis sapindoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea dryandri subsp. indeterminate replace: Grevillea dryandri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea pyramidalis subsp. indeterminate replace: Grevillea pyramidalis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea refracta subsp. indeterminate replace: Grevillea refracta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea lorea subsp. indeterminate replace: Hakea lorea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea var. indeterminate replace: Halgania cyanea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea var. latisepala replace: Halgania cyanea var. latisepala MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania solanacea var. indeterminate replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. indeterminate replace: Halosarcia halocnemoides reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia indica subsp. indeterminate replace: Halosarcia indica reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres dentata var. dentata replace: Helicteres dentata var. dentata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helicteres dentata var. indeterminate replace: Helicteres dentata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres dentata var. procumbens replace: Helicteres dentata var. procumbens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helicteres sp. Glenluckie Creek (N.B.Byrnes 1280) replace: Helicteres sp. Glenluckie Creek (N.Byrnes 1280) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Kakadu (L.G.Adams 3089) replace: Helicteres sp. Kakadu (L.G.Adams 3089) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus fryxellii var. indeterminate replace: Hibiscus fryxellii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sturtii var. indeterminate replace: Hibiscus sturtii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus enneaspermus subsp. indeterminate replace: Hybanthus enneaspermus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoestes floribunda var. indeterminate replace: Hypoestes floribunda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophostemon grandiflorus subsp. indeterminate replace: Lophostemon grandiflorus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca acacioides subsp. acacioides replace: Melaleuca acacioides var. acacioides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Melaleuca acacioides subsp. alsophila replace: Melaleuca acacioides subsp. alsophila reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca acacioides subsp. indeterminate replace: Melaleuca acacioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca cajuputi subsp. indeterminate replace: Melaleuca cajuputi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca nervosa subsp. indeterminate replace: Melaleuca nervosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sericea subsp. gracilis replace: Melaleuca sericea subsp. gracilis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca sericea subsp. indeterminate replace: Melaleuca sericea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Red Bark (P.S.Brocklehurst 457) replace: Melaleuca sp. Red Bark (P.S.Brocklehurst 457) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Murraya paniculata var. ovatifoliolata replace: Murraya paniculata var. ovatifoliolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Myristica insipida var. indeterminate replace: Myristica insipida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nitraria billardieri replace: Nitraria billardieri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pachynema diffusum replace: Pachynema diffusum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pachynema diffusum + replace: Hibbertia haplostemona + reason: Manual alignment with currently accepted APC name (E. Wenk, 2023-05-22) + taxonomic_resolution: species - find: Phyllanthus hebecarpus replace: Phyllanthus hebecarpus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. Roper River (R.K.Harwood 713) replace: Phyllanthus sp. Roper River (R.K.Harwood 713) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllodium pulchellum var. indeterminate replace: Phyllodium pulchellum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pityrodia lanceolata replace: Pityrodia lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pityrodia megalophylla replace: Pityrodia megalophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea sp. Ormiston (H.D.V.Prendegast 66) replace: Pluchea sp. Ormiston (H.D.V.Prendegast 66) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psydrax attenuata var. myrmecophila replace: Psydrax attenuata f. myrmecophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-05-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Pterocaulon serrulatum var. indeterminate replace: Pterocaulon serrulatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus aristatus var. aristatus replace: Ptilotus aristatus subsp. aristatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ptilotus aristatus var. eichlerianus replace: Ptilotus aristatus var. eichlerianus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus aristatus var. exilis replace: Ptilotus aristatus var. exilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus aristatus var. indeterminate replace: Ptilotus aristatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus aristatus var. stenophyllus replace: Ptilotus aristatus var. stenophyllus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus incanus var. indeterminate replace: Ptilotus incanus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus latifolius var. indeterminate replace: Ptilotus latifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus latifolius var. major replace: Ptilotus latifolius var. major reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus obovatus var. indeterminate replace: Ptilotus obovatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus parvifolius var. parvifolius replace: Ptilotus parvifolius var. parvifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus sessilifolius var. indeterminate replace: Ptilotus sessilifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: SIMAROUBACEAE sp. Mary River (I.D.Cowie 1454) replace: Simaroubaceae sp. Mary River (I.D.Cowie 1454) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcostemma viminale subsp. indeterminate replace: Sarcostemma viminale reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus brunonis var. ovatus replace: Sauropus brunonis var. ovatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sauropus stenocladus subsp. indeterminate replace: Sauropus stenocladus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola browniana subsp. grandiora replace: Scaevola browniana subsp. grandior reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola browniana subsp. indeterminate replace: Scaevola browniana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola parvifolia subsp. indeterminate replace: Scaevola parvifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola revoluta subsp. indeterminate replace: Scaevola revoluta reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. replace: Senna artemisioides subsp. x sturtii reason: match_12. Manual alignment with infraspecific canonical name in APC accepted when notes are ignored (E. Wenk, 2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. indeterminate replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa subsp. indeterminate replace: Senna glutinosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna surattensis subsp. indeterminate replace: Senna surattensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sesbania cannabina var. indeterminate replace: Sesbania cannabina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sesbania javanica replace: Sesbania javanica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Petermann Ranges (B.G.Thomson 2340) replace: Sida sp. Petermann Ranges (B.G.Thomson 2340) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum orbiculatum subsp. indeterminate replace: Solanum orbiculatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium eucalyptoides subsp. indeterminate replace: Syzygium eucalyptoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium forte subsp. indeterminate replace: Syzygium forte reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia brachyodon var. cloncurrensis replace: Tephrosia brachyodon var. cloncurrensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia brachyodon var. indeterminate replace: Tephrosia brachyodon reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia brachyodon var. multiflora replace: Tephrosia brachyodon var. multiflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia filipes var. indeterminate replace: Tephrosia filipes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia rosea var. indeterminate replace: Tephrosia rosea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. OT Station (S.T.Blake 17659) replace: Tephrosia sp. O.T. Station (S.T.Blake 17659) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia aridicola subsp. indeterminate replace: Terminalia aridicola reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trema tomentosa var. indeterminate replace: Trema tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichodesma zeylanicum var. indeterminate replace: Trichodesma zeylanicum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta ryeae subsp. indeterminate replace: Triumfetta ryeae reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia cunninghamii replace: Wedelia cunninghamii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-05-22) - taxonomic_resolution: Species -- find: Pachynema diffusum - replace: Hibbertia haplostemona - reason: Manual alignment with currently accepted APC name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Rye_2002/metadata.yml b/data/Rye_2002/metadata.yml index fc8b30fdb..1760c98f1 100644 --- a/data/Rye_2002/metadata.yml +++ b/data/Rye_2002/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2002 taxon_name: binomial @@ -154,6 +154,6 @@ taxonomic_updates: - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Rye_2006/metadata.yml b/data/Rye_2006/metadata.yml index 4367ba95b..2fc09cfbc 100644 --- a/data/Rye_2006/metadata.yml +++ b/data/Rye_2006/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' data[["flowering_time"]] <- format_flowering_months(data[["flowering + custom_R_code: ' data[["flowering_time"]] <- format_flowering_months(data[["flowering month begin"]], data[["flowering month end"]]); data[["flowering month begin"]] <- NULL; data[["flowering month end"]] <- NULL; data' collection_date: unknown/2006 diff --git a/data/Rye_2009_1/metadata.yml b/data/Rye_2009_1/metadata.yml index 451fdb0f4..0cb6415a5 100644 --- a/data/Rye_2009_1/metadata.yml +++ b/data/Rye_2009_1/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2009 taxon_name: binomial diff --git a/data/Rye_2009_2/metadata.yml b/data/Rye_2009_2/metadata.yml index 9b049ab37..c4223cedc 100644 --- a/data/Rye_2009_2/metadata.yml +++ b/data/Rye_2009_2/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2010 taxon_name: binomial diff --git a/data/Rye_2013_1/metadata.yml b/data/Rye_2013_1/metadata.yml index 3ae813312..ca438d7c8 100644 --- a/data/Rye_2013_1/metadata.yml +++ b/data/Rye_2013_1/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' data %>% mutate(flowering_time = format_flowering_months(`flowering + custom_R_code: ' data %>% mutate(flowering_time = format_flowering_months(`flowering month begin`, `flowering month end`))' collection_date: unknown/2013 taxon_name: binomial diff --git a/data/Rye_2013_2/metadata.yml b/data/Rye_2013_2/metadata.yml index a072d9e7c..02a1497fc 100644 --- a/data/Rye_2013_2/metadata.yml +++ b/data/Rye_2013_2/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2013 taxon_name: binomial diff --git a/data/Rye_2015/metadata.yml b/data/Rye_2015/metadata.yml index 804b0d1f1..416785bb5 100644 --- a/data/Rye_2015/metadata.yml +++ b/data/Rye_2015/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) %>% diff --git a/data/SAH_2014/metadata.yml b/data/SAH_2014/metadata.yml index ff0ee1dd3..1ad2438a9 100644 --- a/data/SAH_2014/metadata.yml +++ b/data/SAH_2014/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_length_unit_numeric = ifelse(leaf_length_unit == "cm", 10, NA), @@ -103,39 +103,39 @@ taxonomic_updates: - find: Brachycome ciliaris var. ciliaris replace: Brachyscome ciliaris var. ciliaris reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brassica x juncea replace: Brassica x juncea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica napus replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capsella bursapastoris replace: Capsella bursa-pastoris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardieri replace: Poa labillardierei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stellaria palustris var. palustris replace: Stellaria palustris reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin ovoideum replace: Triglochin ovoidea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Anacyclus radiatus diff --git a/data/SAH_2022/metadata.yml b/data/SAH_2022/metadata.yml index c15050484..3a4df387f 100644 --- a/data/SAH_2022/metadata.yml +++ b/data/SAH_2022/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% mutate( @@ -39,9 +39,9 @@ dataset: life_stage: adult sampling_strategy: This dataset is sourced from the Electronic Flora of South Australia online website (version date 2022-05-06). Briefly, the textual descriptions of - each taxon were downloaded and organised into a tabular format of individual - taxon names and their corresponding text using R coding script. Sentences and - phrases were categorised using a large glossary of botanical terminology as referring + each taxon were downloaded and organised into a tabular format of individual taxon + names and their corresponding text using R coding script. Sentences and phrases + were categorised using a large glossary of botanical terminology as referring to one of the following, the entire organism, stem, leaf, flower, fruit/seed, roots and environment/habitat. Key terms corresponding to trait values in AusTraits were then extracted from these smaller chunks of text using a reference table @@ -137,1249 +137,1249 @@ taxonomic_updates: replace: Abutilon oxycarpum var. incanum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila aequispina replace: Acaena agnipila var. aequispina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila protenta replace: Acaena agnipila var. protenta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila tenuispica replace: Acaena agnipila var. tenuispica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata retrorsumpilosa replace: Acaena echinata var. retrorsumpilosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata robusta replace: Acaena echinata var. robusta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata subglabricalyx replace: Acaena echinata var. subglabricalyx reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata tylacantha replace: Acaena echinata var. tylacantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agave americana americana replace: Agave americana var. americana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agave americana picta replace: Agave americana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis avenacea perennis replace: Agrostis avenacea var. perennis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agrostis billardieri filifolia replace: Agrostis billardieri var. filifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agrostis billardieri robusta replace: Agrostis billardieri var. robusta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Anthocercis anisantha anisantha replace: Anthocercis anisantha subsp. anisantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anthocercis anisantha collina replace: Anthocercis anisantha subsp. collina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum filiforme replace: Apium prostratum var. filiforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Apium prostratum prostratum replace: Apium prostratum subsp. prostratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex lindleyi conduplicata replace: Atriplex lindleyi subsp. conduplicata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia nummularia replace: Atriplex nummularia subsp. nummularia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia omissa replace: Atriplex nummularia subsp. omissa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia spathulata replace: Atriplex nummularia subsp. spathulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex paludosa cordata replace: Atriplex paludosa subsp. cordata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex paludosa paludosa replace: Atriplex paludosa subsp. paludosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex vesicaria appendiculata replace: Atriplex vesicaria subsp. appendiculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex vesicaria macrocystidia replace: Atriplex vesicaria subsp. macrocystidia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex vesicaria variabilis replace: Atriplex vesicaria subsp. variabilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachycome ciliaris lanuginosa replace: Brachycome ciliaris var. lanuginosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachycome parvula lissocarpa replace: Brachycome parvula var. lissocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachyloma ericoides bicolor replace: Brachyloma ericoides subsp. bicolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachyloma ericoides ericoides replace: Brachyloma ericoides subsp. ericoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica napus replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bursaria spinosa australis replace: Bursaria spinosa var. australis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa lanceolata replace: Bursaria spinosa var. lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa macrophylla replace: Bursaria spinosa var. macrophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa microphylla replace: Bursaria spinosa var. microphylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa obovata replace: Bursaria spinosa var. obovata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa spinosa replace: Bursaria spinosa subsp. spinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caladenia carnea gigantea replace: Caladenia carnea var. gigantea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia carnea minor replace: Caladenia carnea var. minor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia dilatata stricta replace: Caladenia dilatata var. stricta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia filamentosa filamentosa replace: Caladenia filamentosa var. filamentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia filamentosa tentaculata replace: Caladenia filamentosa var. tentaculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Capsella bursapastoris replace: Capsella bursa-pastoris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha peninsularis flindersii replace: Cassytha peninsularis var. flindersii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Centrolepis cephaloformis cephaloformis replace: Centrolepis cephaloformis subsp. cephaloformis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centrolepis cephaloformis murrayi replace: Centrolepis cephaloformis subsp. murrayi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes sieberi pseudovellea replace: Cheilanthes sieberi subsp. pseudovellea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes sieberi sieberi replace: Cheilanthes sieberi subsp. sieberi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum anidiophyllum replace: Chenopodium desertorum subsp. anidiophyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum desertorum replace: Chenopodium desertorum subsp. desertorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum microphyllum replace: Chenopodium desertorum subsp. microphyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum rectum replace: Chenopodium desertorum subsp. rectum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Correa reflexa coriacea replace: Correa reflexa var. coriacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Correa reflexa nummulariifolia replace: Correa reflexa var. nummulariifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Correa reflexa reflexa replace: Correa reflexa var. reflexa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cotyledon orbiculata oblonga replace: Cotyledon orbiculata var. oblonga reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cotyledon orbiculata orbiculata replace: Cotyledon orbiculata var. orbiculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crassula colorata acuminata replace: Crassula colorata var. acuminata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crassula colorata colorata replace: Crassula colorata var. colorata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crataegus sinaica replace: Crataegus x sinaica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra amara amara replace: Cryptandra amara var. amara reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptandra amara floribunda replace: Cryptandra amara var. floribunda reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptandra amara longiflora replace: Cryptandra amara var. longiflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata insularis replace: Dampiera lanceolata var. insularis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata intermedia replace: Dampiera lanceolata var. intermedia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata lanceolata replace: Dampiera lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Danthonia carphoides angustior replace: Danthonia carphoides var. angustior reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Danthonia pilosa paleacea replace: Danthonia pilosa var. paleacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daviesia benthamii benthamii replace: Daviesia benthamii subsp. benthamii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Daviesia benthamii humilis replace: Daviesia benthamii subsp. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis beveridgei beveridgei replace: Dicrastylis beveridgei subsp. beveridgei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis beveridgei lanata replace: Dicrastylis beveridgei var. lanata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi costelloi replace: Dicrastylis costelloi var. costelloi reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi globulifera replace: Dicrastylis costelloi var. globulifera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi violacea replace: Dicrastylis costelloi var. violacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis exsuccosa tomentosa replace: Dicrastylis exsuccosa f. tomentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dicrastylis gilesii bagotensis replace: Dicrastylis gilesii f. bagotensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dicrastylis gilesii gilesii replace: Dicrastylis gilesii f. gilesii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dissocarpus biflorus biflorus replace: Dissocarpus biflorus var. biflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dissocarpus biflorus villosus replace: Dissocarpus biflorus var. villosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea viscosa cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa mucronata replace: Dodonaea viscosa subsp. mucronata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dysphania glomulifera eremaea replace: Dysphania glomulifera subsp. eremaea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dysphania glomulifera glomulifera replace: Dysphania glomulifera subsp. glomulifera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans eremaea replace: Einadia nutans subsp. eremaea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans nutans replace: Einadia nutans subsp. nutans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans oxycarpa replace: Einadia nutans subsp. oxycarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Enchylaena tomentosa glabra replace: Enchylaena tomentosa var. glabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa tomentosa replace: Enchylaena tomentosa var. tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eremophila oppositifolia angustifolia replace: Eremophila oppositifolia subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila oppositifolia oppositifolia replace: Eremophila oppositifolia subsp. oppositifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erodium cygnorum cygnorum replace: Erodium cygnorum subsp. cygnorum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erodium cygnorum glandulosum replace: Erodium cygnorum subsp. glandulosum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erophila verna praecox replace: Erophila verna subsp. praecox reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus viminalis viminalis replace: Eucalyptus viminalis subsp. viminalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia microphylla diffusa replace: Eutaxia microphylla var. diffusa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Evolvulus alsinoides decumbens replace: Evolvulus alsinoides var. decumbens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Evolvulus alsinoides villosicalyx replace: Evolvulus alsinoides var. villosicalyx reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Frankenia pauciflora fruticulosa replace: Frankenia pauciflora var. fruticulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Frankenia pauciflora gunnii replace: Frankenia pauciflora var. gunnii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Fumaria muralis boraei replace: Fumaria muralis subsp. boraei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria muralis muralis replace: Fumaria muralis subsp. muralis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria officinalis officinalis replace: Fumaria officinalis subsp. officinalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria officinalis wirtgenii replace: Fumaria officinalis subsp. wirtgenii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Glycine clandestina sericea replace: Glycine clandestina var. sericea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Goodia lotifolia lotifolia replace: Goodia lotifolia var. lotifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Goodia lotifolia pubescens replace: Goodia lotifolia var. pubescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Grevillea lavandulacea lavandulacea replace: Grevillea lavandulacea subsp. lavandulacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea lavandulacea sericea replace: Grevillea lavandulacea var. sericea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halosarcia indica bidens replace: Halosarcia indica subsp. bidens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia indica leiostachya replace: Halosarcia indica subsp. leiostachya reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata divaricata replace: Halosarcia pergranulata subsp. divaricata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata elongata replace: Halosarcia pergranulata subsp. elongata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata pergranulata replace: Halosarcia pergranulata subsp. pergranulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Harmsiodoxa brevipes brevipes replace: Harmsiodoxa brevipes var. brevipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Harmsiodoxa brevipes major replace: Harmsiodoxa brevipes var. major reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helichrysum ambiguum vinaceum replace: Helichrysum ambiguum subsp. vinaceum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Helichrysum bilobum scabrum replace: Helichrysum bilobum var. scabrum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hibbertia sericea major replace: Hibbertia sericea var. major reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hordeum vulgare distichon replace: Hordeum vulgare subsp. distichon reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hordeum vulgare vulgare replace: Hordeum vulgare var. vulgare reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ixodia achillaeoides achillaeoides replace: Ixodia achillaeoides subsp. achillaeoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ixodia achillaeoides alata replace: Ixodia achillaeoides subsp. alata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ixodia achillaeoides arenicola replace: Ixodia achillaeoides subsp. arenicola reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Kickxia elatine crinita replace: Kickxia elatine subsp. crinita reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Kickxia elatine elatine replace: Kickxia elatine subsp. elatine reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium hybridum replace: Lolium x hybridum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra glauca collina replace: Lomandra glauca subsp. collina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra glauca nana replace: Lomandra glauca subsp. nana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Microcybe multiflora baccharoides replace: Microcybe multiflora subsp. baccharoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii greevesii replace: Millotia greevesii subsp. greevesii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii helmsii replace: Millotia greevesii subsp. helmsii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii kempei replace: Millotia greevesii var. kempei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Millotia tenuifolia nudescens replace: Millotia tenuifolia var. nudescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Millotia tenuifolia tenuifolia replace: Millotia tenuifolia var. tenuifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Newcastelia cephalantha cephalantha replace: Newcastelia cephalantha var. cephalantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Newcastelia cephalantha tephropepla replace: Newcastelia cephalantha var. tephropepla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Olearia passerinoides passerinoides replace: Olearia passerinoides subsp. passerinoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Opuntia lindheimeri lindheimeri replace: Opuntia lindheimeri var. lindheimeri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Opuntia lindheimeri linguiformis replace: Opuntia lindheimeri var. linguiformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Osteocarpum acropterum acropterum replace: Osteocarpum acropterum var. acropterum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Osteocarpum acropterum deminutum replace: Osteocarpum acropterum var. deminutum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium asperum replace: Pelargonium x asperum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium domesticum replace: Pelargonium x domesticum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora gracilis replace: Pimelea curviflora var. gracilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea curviflora micrantha replace: Pimelea curviflora subsp. micrantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea curviflora sericea replace: Pimelea curviflora var. sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea flava dichotoma replace: Pimelea flava subsp. dichotoma reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea flava flava replace: Pimelea flava subsp. flava reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea octophylla octophylla replace: Pimelea octophylla var. octophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea octophylla petraea replace: Pimelea octophylla subsp. petraea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea octophylla subvillifera replace: Pimelea octophylla subsp. subvillifera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plantago coronopus commutata replace: Plantago coronopus subsp. commutata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plantago coronopus coronopus replace: Plantago coronopus subsp. coronopus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plantago lanceolata dubia replace: Plantago lanceolata var. dubia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Plantago lanceolata lanceolata replace: Plantago lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Platysace heterophylla heterophylla replace: Platysace heterophylla var. heterophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Platysace heterophylla tepperi replace: Platysace heterophylla var. tepperi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Podolepis rugata littoralis replace: Podolepis rugata subsp. littoralis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Podolepis rugata rugata replace: Podolepis rugata subsp. rugata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prasophyllum fuscum occidentale replace: Prasophyllum fuscum var. occidentale reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum fuscum validum replace: Prasophyllum fuscum var. validum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum patens patens replace: Prasophyllum patens var. patens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum patens pruinosum replace: Prasophyllum patens var. pruinosum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera serpyllifolia microphylla replace: Prostanthera serpyllifolia subsp. microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prostanthera serpyllifolia serpyllifolia replace: Prostanthera serpyllifolia subsp. serpyllifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prunus persica nectarina replace: Prunus persica var. nectarina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prunus persica persica replace: Prunus persica var. persica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus aristatus aristatus replace: Ptilotus aristatus subsp. aristatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ptilotus exaltatus exaltatus replace: Ptilotus exaltatus var. exaltatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus exaltatus semilanatus replace: Ptilotus exaltatus var. semilanatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus gaudichaudii gaudichaudii replace: Ptilotus gaudichaudii subsp. gaudichaudii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ptilotus gaudichaudii parviflorus replace: Ptilotus gaudichaudii var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus incanus parviflorus replace: Ptilotus incanus var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus nobilis angustifolius replace: Ptilotus nobilis var. angustifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus nobilis nobilis replace: Ptilotus nobilis subsp. nobilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pultenaea canaliculata canaliculata replace: Pultenaea canaliculata var. canaliculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea canaliculata latifolia replace: Pultenaea canaliculata var. latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea rigida ovata replace: Pultenaea rigida var. ovata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea rigida rigida replace: Pultenaea rigida var. rigida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea teretifolia brachyphylla replace: Pultenaea teretifolia var. brachyphylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea teretifolia teretifolia replace: Pultenaea teretifolia var. teretifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pentandrus pentandrus replace: Ranunculus pentandrus var. pentandrus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pentandrus platycarpus replace: Ranunculus pentandrus var. platycarpus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pumilio politus replace: Ranunculus pumilio var. politus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pumilio pumilio replace: Ranunculus pumilio var. pumilio reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus sessiliflorus pilulifer replace: Ranunculus sessiliflorus var. pilulifer reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus sessiliflorus sessiliflorus replace: Ranunculus sessiliflorus var. sessiliflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rhagodia candolleana argentea replace: Rhagodia candolleana subsp. argentea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhagodia candolleana candolleana replace: Rhagodia candolleana subsp. candolleana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rostellularia adscendens clementii replace: Rostellularia adscendens subsp. clementii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex dumosus dumosiformis replace: Rumex dumosus var. dumosiformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rumex pulcher divaricatus replace: Rumex pulcher subsp. divaricatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rumex pulcher pulcher replace: Rumex pulcher subsp. pulcher reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola albida pallida replace: Scaevola albida var. pallida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola linearis confertifolia replace: Scaevola linearis subsp. confertifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sclerolaena muricata muricata replace: Sclerolaena muricata var. muricata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sclerolaena muricata semiglabra replace: Sclerolaena muricata var. semiglabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sclerolaena muricata villosa replace: Sclerolaena muricata var. villosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio odoratus longifolius replace: Senecio odoratus var. longifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio odoratus obtusifolius replace: Senecio odoratus var. obtusifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio orarius replace: Senecio x orarius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida corrugata angustifolia replace: Sida corrugata var. angustifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sida corrugata corrugata replace: Sida corrugata var. corrugata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Silene gallica gallica replace: Silene gallica var. gallica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Silene gallica quinquevulnera replace: Silene gallica var. quinquevulnera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sonchus asper asper replace: Sonchus asper subsp. asper reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sonchus asper glaucescens replace: Sonchus asper subsp. glaucescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spartina townsendii replace: Spartina x townsendii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium bifidum bifidum replace: Spyridium bifidum subsp. bifidum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spyridium bifidum integrifolium replace: Spyridium bifidum var. integrifolium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium eriocephalum eriocephalum replace: Spyridium eriocephalum var. eriocephalum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium eriocephalum glabrisepalum replace: Spyridium eriocephalum var. glabrisepalum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum halmaturinum replace: Spyridium halmaturinum var. halmaturinum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum integrifolium replace: Spyridium halmaturinum var. integrifolium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum scabridum replace: Spyridium halmaturinum var. scabridum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium subochreatum laxiusculum replace: Spyridium subochreatum var. laxiusculum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium subochreatum subochreatum replace: Spyridium subochreatum var. subochreatum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium vexilliferum latifolium replace: Spyridium vexilliferum var. latifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium vexilliferum vexilliferum replace: Spyridium vexilliferum var. vexilliferum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stellaria palustris palustris replace: Stellaria palustris reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stellaria palustris tenella replace: Stellaria palustris var. tenella reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona canescens horniana replace: Swainsona canescens var. horniana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microcalyx adenophylla replace: Swainsona microcalyx var. adenophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla affinis replace: Swainsona microphylla var. affinis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla glabrescens replace: Swainsona microphylla subsp. glabrescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Swainsona microphylla minima replace: Swainsona microphylla var. minima reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla pallescens replace: Swainsona microphylla subsp. pallescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Swainsona microphylla tomentosa replace: Swainsona microphylla var. tomentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona murrayana eciliata replace: Swainsona murrayana subsp. eciliata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium grandiusculum grandiusculum replace: Teucrium grandiusculum subsp. grandiusculum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium grandiusculum pilosum replace: Teucrium grandiusculum subsp. pilosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Thysanotus tuberosus parviflorus replace: Thysanotus tuberosus subsp. parviflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Thysanotus tuberosus tuberosus replace: Thysanotus tuberosus subsp. tuberosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Trachymene ornata ornata replace: Trachymene ornata var. ornata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trachymene ornata semilanata replace: Trachymene ornata var. semilanata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Triglochin ovoideum replace: Triglochin ovoidea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia irritans compacta replace: Triodia irritans var. compacta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Triodia irritans laxispicata replace: Triodia irritans var. laxispicata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Vicia sativa cordata replace: Vicia sativa subsp. cordata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vicia sativa nigra replace: Vicia sativa subsp. nigra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vicia sativa sativa replace: Vicia sativa subsp. sativa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vittadinia cuneata morrisii replace: Vittadinia cuneata var. morrisii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Xanthorrhoea semiplana semiplana replace: Xanthorrhoea semiplana subsp. semiplana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthorrhoea semiplana tateana replace: Xanthorrhoea semiplana subsp. tateana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthosia dissecta floribunda replace: Xanthosia dissecta var. floribunda reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: - variable: taxon_name find: Taraxacum sect. Erythrosperma diff --git a/data/SAH_2023/metadata.yml b/data/SAH_2023/metadata.yml index a9d18f82c..8034626a6 100644 --- a/data/SAH_2023/metadata.yml +++ b/data/SAH_2023/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -452,1662 +452,1662 @@ substitutions: find: rhizome_woody rhizome_tuberous replace: rhizome_woody rhizome_fleshy taxonomic_updates: -- find: Allium scorodoprasum rotundum - replace: Allium scorodoprasum subsp. rotundum - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Argyranthemum frutescens foeniculaceum - replace: Argyranthemum frutescens subsp. foeniculaceum - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Argyranthemum frutescens frutescens - replace: Argyranthemum frutescens subsp. frutescens - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex acutibractea acutibractea - replace: Atriplex acutibractea subsp. acutibractea - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex acutibractea karoniensis - replace: Atriplex acutibractea subsp. karoniensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex lindleyi inflata - replace: Atriplex lindleyi subsp. inflata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex lindleyi lindleyi - replace: Atriplex lindleyi subsp. lindleyi - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex lindleyi quadripartita - replace: Atriplex lindleyi subsp. quadripartita - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Atriplex quadrivalvata quadrivalvata - replace: Atriplex quadrivalvata var. quadrivalvata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Atriplex quadrivalvata sessilifolia - replace: Atriplex quadrivalvata var. sessilifolia - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Atriplex vesicaria calcicola - replace: Atriplex vesicaria subsp. calcicola - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Callistemon rugulosus laevifolius - replace: Callistemon rugulosus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Cassia desolata planipes - replace: Senna artemisioides subsp. x petiolaris - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Cassia nemophila coriacea - replace: Cassia nemophila var. coriacea - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Cassia nemophila nemophila - replace: Cassia nemophila var. nemophila - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Cassia nemophila platypoda - replace: Senna artemisioides subsp. x petiolaris - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Cassia nemophila zygophylla - replace: Cassia nemophila var. zygophylla - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Crotalaria eremaea eremaea - replace: Crotalaria eremaea subsp. eremaea - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Crotalaria eremaea strehlowii - replace: Crotalaria eremaea subsp. strehlowii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Daviesia asperula asperula - replace: Daviesia asperula subsp. asperula - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Daviesia asperula obliqua - replace: Daviesia asperula subsp. obliqua - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Dipteracanthus australasicus glabratus - replace: Dipteracanthus australasicus subsp. glabratus - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eremophila maculata brevifolia - replace: Eremophila maculata subsp. brevifolia - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eremophila maculata maculata - replace: Eremophila maculata subsp. maculata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus camaldulensis camaldulensis - replace: Eucalyptus camaldulensis subsp. camaldulensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus camaldulensis obtusa - replace: Eucalyptus camaldulensis subsp. obtusa - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus incrassata angulosa - replace: Eucalyptus angulosa - reason: Manual alignment with synonymous term among known canonical names APC (E. - Wenk, 2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus lansdowneana albopurpurea - replace: Eucalyptus lansdowneana subsp. albopurpurea - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus obliqua megacarpa - replace: Eucalyptus obliqua - reason: Manual alignment with synonymous term among known canonical names APC (E. - Wenk, 2023-05-24) - taxonomic_resolution: Varietas -- find: Eucalyptus viminalis cygnetensis - replace: Eucalyptus viminalis subsp. cygnetensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus yumbarrana striata - replace: Eucalyptus yumbarrana subsp. x striata - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2023-05-24) - taxonomic_resolution: Subspecies -- find: Eucalyptus yumbarrana yumbarrana - replace: Eucalyptus yumbarrana subsp. yumbarrana - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina collina - replace: Euphrasia collina subsp. collina - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina muelleri - replace: Euphrasia collina subsp. muelleri - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina osbornii - replace: Euphrasia collina subsp. osbornii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina paludosa - replace: Euphrasia collina subsp. paludosa - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina tetragona - replace: Euphrasia collina subsp. tetragona - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Euphrasia collina trichocalycina - replace: Euphrasia collina subsp. trichocalycina - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Hibiscus sturtii grandiflorus - replace: Hibiscus sturtii var. grandiflorus - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Hibiscus sturtii sturtii - replace: Hibiscus sturtii var. sturtii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Hibiscus trionum trionum - replace: Hibiscus trionum var. trionum - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Hibiscus trionum vesicarius - replace: Hibiscus trionum var. vesicarius - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Olearia ciliata ciliata - replace: Olearia ciliata var. ciliata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Olearia ciliata squamifolia - replace: Olearia ciliata var. squamifolia - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Olearia pannosa cardiophylla - replace: Olearia pannosa subsp. cardiophylla - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Olearia pannosa pannosa - replace: Olearia pannosa subsp. pannosa - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Olearia passerinoides glutescens - replace: Olearia passerinoides subsp. glutescens - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Olearia pimeleoides incana - replace: Olearia incana - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Olearia pimeleoides pimeleoides - replace: Olearia pimeleoides var. pimeleoides - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Pimelea microcephala glabra - replace: Pimelea microcephala subsp. glabra - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Pimelea simplex continua - replace: Pimelea simplex subsp. continua - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Pimelea simplex simplex - replace: Pimelea simplex subsp. simplex - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Ptilotus aristatus eichlerianus - replace: Ptilotus aristatus subsp. aristatus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus helipteroides helipteroides - replace: Ptilotus helipteroides var. helipteroides - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus helipteroides minor - replace: Ptilotus helipteroides var. minor - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus incanus incanus - replace: Ptilotus incanus var. incanus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus murrayi major - replace: Ptilotus murrayi - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus murrayi murrayi - replace: Ptilotus murrayi var. murrayi - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus obovatus griseus - replace: Ptilotus obovatus var. griseus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus obovatus obovatus - replace: Ptilotus obovatus var. obovatus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus parvifolius laetus - replace: Ptilotus parvifolius var. laetus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus parvifolius parvifolius - replace: Ptilotus parvifolius - reason: Manual alignment with synonymous term among known canonical names APC (E. - Wenk, 2023-05-24) - taxonomic_resolution: Varietas -- find: Ptilotus polystachyus polystachyus - replace: Ptilotus polystachyus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Forma -- find: Ptilotus spathulatus angustatus - replace: Ptilotus spathulatus f. angustatus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Forma -- find: Ptilotus spathulatus spathulatus - replace: Ptilotus spathulatus f. spathulatus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Forma -- find: Scaevola linearis linearis - replace: Scaevola linearis subsp. linearis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies -- find: Senecio cunninghamii cunninghamii - replace: Senecio cunninghamii var. cunninghamii - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Senecio cunninghamii serratus - replace: Senecio lanibracteus - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Villarsia umbricola beaugleholei - replace: Villarsia umbricola var. beaugleholei - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Villarsia umbricola umbricola - replace: Villarsia umbricola var. umbricola - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Vittadinia australasica oricola - replace: Vittadinia australasica var. oricola - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Vittadinia australasica subglabra - replace: Vittadinia australasica var. subglabra - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Vittadinia cuneata cuneata - replace: Vittadinia cuneata var. cuneata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Vittadinia cuneata murrayensis - replace: Vittadinia cuneata var. murrayensis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Varietas -- find: Zostera muelleri muelleri - replace: Zostera muelleri subsp. muelleri - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-05-24) - taxonomic_resolution: Subspecies - find: Abutilon oxycarpum incanum replace: Abutilon oxycarpum var. incanum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila aequispina replace: Acaena agnipila var. aequispina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila protenta replace: Acaena agnipila var. protenta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena agnipila tenuispica replace: Acaena agnipila var. tenuispica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata retrorsumpilosa replace: Acaena echinata var. retrorsumpilosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata robusta replace: Acaena echinata var. robusta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata subglabricalyx replace: Acaena echinata var. subglabricalyx reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena echinata tylacantha replace: Acaena echinata var. tylacantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agave americana americana replace: Agave americana var. americana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agave americana picta replace: Agave americana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis avenacea perennis replace: Agrostis avenacea var. perennis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agrostis billardieri filifolia replace: Agrostis billardieri var. filifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Agrostis billardieri robusta replace: Agrostis billardieri var. robusta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Allium scorodoprasum rotundum + replace: Allium scorodoprasum subsp. rotundum + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Anthocercis anisantha anisantha replace: Anthocercis anisantha subsp. anisantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anthocercis anisantha collina replace: Anthocercis anisantha subsp. collina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum filiforme replace: Apium prostratum var. filiforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Apium prostratum prostratum replace: Apium prostratum subsp. prostratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Argyranthemum frutescens foeniculaceum + replace: Argyranthemum frutescens subsp. foeniculaceum + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Argyranthemum frutescens frutescens + replace: Argyranthemum frutescens subsp. frutescens + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Atriplex acutibractea acutibractea + replace: Atriplex acutibractea subsp. acutibractea + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Atriplex acutibractea karoniensis + replace: Atriplex acutibractea subsp. karoniensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Atriplex lindleyi conduplicata replace: Atriplex lindleyi subsp. conduplicata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Atriplex lindleyi inflata + replace: Atriplex lindleyi subsp. inflata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Atriplex lindleyi lindleyi + replace: Atriplex lindleyi subsp. lindleyi + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Atriplex lindleyi quadripartita + replace: Atriplex lindleyi subsp. quadripartita + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Atriplex nummularia nummularia replace: Atriplex nummularia subsp. nummularia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia omissa replace: Atriplex nummularia subsp. omissa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex nummularia spathulata replace: Atriplex nummularia subsp. spathulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex paludosa cordata replace: Atriplex paludosa subsp. cordata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex paludosa paludosa replace: Atriplex paludosa subsp. paludosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Atriplex quadrivalvata quadrivalvata + replace: Atriplex quadrivalvata var. quadrivalvata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Atriplex quadrivalvata sessilifolia + replace: Atriplex quadrivalvata var. sessilifolia + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas - find: Atriplex vesicaria appendiculata replace: Atriplex vesicaria subsp. appendiculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Atriplex vesicaria calcicola + replace: Atriplex vesicaria subsp. calcicola + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Atriplex vesicaria macrocystidia replace: Atriplex vesicaria subsp. macrocystidia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex vesicaria variabilis replace: Atriplex vesicaria subsp. variabilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Brachycome ciliaris brachyglossa + replace: Brachycome ciliaris var. brachyglossa + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Brachycome ciliaris ciliaris + replace: Brachyscome ciliaris var. ciliaris + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) + taxonomic_resolution: varietas - find: Brachycome ciliaris lanuginosa replace: Brachycome ciliaris var. lanuginosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Brachycome ciliaris lyrifolia + replace: Brachycome ciliaris var. lyrifolia + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Brachycome ciliaris subintegrifolia + replace: Brachycome ciliaris var. subintegrifolia + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Brachycome parvula lissocarpa replace: Brachycome parvula var. lissocarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachyloma ericoides bicolor replace: Brachyloma ericoides subsp. bicolor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachyloma ericoides ericoides replace: Brachyloma ericoides subsp. ericoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brassica juncea replace: Brassica x juncea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica napus replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bursaria spinosa australis replace: Bursaria spinosa var. australis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa lanceolata replace: Bursaria spinosa var. lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa macrophylla replace: Bursaria spinosa var. macrophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa microphylla replace: Bursaria spinosa var. microphylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa obovata replace: Bursaria spinosa var. obovata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa spinosa replace: Bursaria spinosa subsp. spinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caladenia carnea gigantea replace: Caladenia carnea var. gigantea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia carnea minor replace: Caladenia carnea var. minor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia dilatata stricta replace: Caladenia dilatata var. stricta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia filamentosa filamentosa replace: Caladenia filamentosa var. filamentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia filamentosa tentaculata replace: Caladenia filamentosa var. tentaculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Callistemon rugulosus laevifolius + replace: Callistemon rugulosus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Capsella bursapastoris replace: Capsella bursa-pastoris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cassia desolata planipes + replace: Senna artemisioides subsp. x petiolaris + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Cassia nemophila coriacea + replace: Cassia nemophila var. coriacea + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Cassia nemophila nemophila + replace: Cassia nemophila var. nemophila + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Cassia nemophila platypoda + replace: Senna artemisioides subsp. x petiolaris + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Cassia nemophila zygophylla + replace: Cassia nemophila var. zygophylla + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Cassytha peninsularis flindersii replace: Cassytha peninsularis var. flindersii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Centrolepis cephaloformis cephaloformis replace: Centrolepis cephaloformis subsp. cephaloformis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centrolepis cephaloformis murrayi replace: Centrolepis cephaloformis subsp. murrayi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes sieberi pseudovellea replace: Cheilanthes sieberi subsp. pseudovellea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes sieberi sieberi replace: Cheilanthes sieberi subsp. sieberi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum anidiophyllum replace: Chenopodium desertorum subsp. anidiophyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum desertorum replace: Chenopodium desertorum subsp. desertorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum microphyllum replace: Chenopodium desertorum subsp. microphyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum rectum replace: Chenopodium desertorum subsp. rectum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Correa reflexa coriacea replace: Correa reflexa var. coriacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Correa reflexa nummulariifolia replace: Correa reflexa var. nummulariifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Correa reflexa reflexa replace: Correa reflexa var. reflexa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cotyledon orbiculata oblonga replace: Cotyledon orbiculata var. oblonga reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cotyledon orbiculata orbiculata replace: Cotyledon orbiculata var. orbiculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crassula colorata acuminata replace: Crassula colorata var. acuminata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crassula colorata colorata replace: Crassula colorata var. colorata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Crataegus sinaica replace: Crataegus x sinaica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Crotalaria eremaea eremaea + replace: Crotalaria eremaea subsp. eremaea + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Crotalaria eremaea strehlowii + replace: Crotalaria eremaea subsp. strehlowii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Cryptandra amara amara replace: Cryptandra amara var. amara reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptandra amara floribunda replace: Cryptandra amara var. floribunda reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cryptandra amara longiflora replace: Cryptandra amara var. longiflora reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata insularis replace: Dampiera lanceolata var. insularis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata intermedia replace: Dampiera lanceolata var. intermedia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dampiera lanceolata lanceolata replace: Dampiera lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Danthonia carphoides angustior replace: Danthonia carphoides var. angustior reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Danthonia pilosa paleacea replace: Danthonia pilosa var. paleacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Daviesia asperula asperula + replace: Daviesia asperula subsp. asperula + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Daviesia asperula obliqua + replace: Daviesia asperula subsp. obliqua + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Daviesia benthamii benthamii replace: Daviesia benthamii subsp. benthamii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Daviesia benthamii humilis replace: Daviesia benthamii subsp. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis beveridgei beveridgei replace: Dicrastylis beveridgei subsp. beveridgei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dicrastylis beveridgei lanata replace: Dicrastylis beveridgei var. lanata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi costelloi replace: Dicrastylis costelloi var. costelloi reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi globulifera replace: Dicrastylis costelloi var. globulifera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis costelloi violacea replace: Dicrastylis costelloi var. violacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicrastylis exsuccosa tomentosa replace: Dicrastylis exsuccosa f. tomentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dicrastylis gilesii bagotensis replace: Dicrastylis gilesii f. bagotensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Dicrastylis gilesii gilesii replace: Dicrastylis gilesii f. gilesii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Forma + taxonomic_resolution: forma +- find: Dipteracanthus australasicus glabratus + replace: Dipteracanthus australasicus subsp. glabratus + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Dissocarpus biflorus biflorus replace: Dissocarpus biflorus var. biflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dissocarpus biflorus villosus replace: Dissocarpus biflorus var. villosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dodonaea viscosa cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa mucronata replace: Dodonaea viscosa subsp. mucronata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dysphania glomulifera eremaea replace: Dysphania glomulifera subsp. eremaea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dysphania glomulifera glomulifera replace: Dysphania glomulifera subsp. glomulifera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans eremaea replace: Einadia nutans subsp. eremaea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans nutans replace: Einadia nutans subsp. nutans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans oxycarpa replace: Einadia nutans subsp. oxycarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Enchylaena tomentosa glabra replace: Enchylaena tomentosa var. glabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa tomentosa replace: Enchylaena tomentosa var. tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Eremophila maculata brevifolia + replace: Eremophila maculata subsp. brevifolia + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Eremophila maculata maculata + replace: Eremophila maculata subsp. maculata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Eremophila oppositifolia angustifolia replace: Eremophila oppositifolia subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremophila oppositifolia oppositifolia replace: Eremophila oppositifolia subsp. oppositifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erodium cygnorum cygnorum replace: Erodium cygnorum subsp. cygnorum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erodium cygnorum glandulosum replace: Erodium cygnorum subsp. glandulosum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Erophila verna praecox replace: Erophila verna subsp. praecox reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Eucalyptus camaldulensis camaldulensis + replace: Eucalyptus camaldulensis subsp. camaldulensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Eucalyptus camaldulensis obtusa + replace: Eucalyptus camaldulensis subsp. obtusa + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Eucalyptus incrassata angulosa + replace: Eucalyptus angulosa + reason: Manual alignment with synonymous term among known canonical names APC (E. + Wenk, 2023-05-24) + taxonomic_resolution: subspecies +- find: Eucalyptus lansdowneana albopurpurea + replace: Eucalyptus lansdowneana subsp. albopurpurea + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Eucalyptus obliqua megacarpa + replace: Eucalyptus obliqua + reason: Manual alignment with synonymous term among known canonical names APC (E. + Wenk, 2023-05-24) + taxonomic_resolution: varietas +- find: Eucalyptus viminalis cygnetensis + replace: Eucalyptus viminalis subsp. cygnetensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Eucalyptus viminalis viminalis replace: Eucalyptus viminalis subsp. viminalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Eucalyptus yumbarrana striata + replace: Eucalyptus yumbarrana subsp. x striata + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2023-05-24) + taxonomic_resolution: subspecies +- find: Eucalyptus yumbarrana yumbarrana + replace: Eucalyptus yumbarrana subsp. yumbarrana + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina collina + replace: Euphrasia collina subsp. collina + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina muelleri + replace: Euphrasia collina subsp. muelleri + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina osbornii + replace: Euphrasia collina subsp. osbornii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina paludosa + replace: Euphrasia collina subsp. paludosa + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina tetragona + replace: Euphrasia collina subsp. tetragona + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Euphrasia collina trichocalycina + replace: Euphrasia collina subsp. trichocalycina + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Eutaxia microphylla diffusa replace: Eutaxia microphylla var. diffusa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Evolvulus alsinoides decumbens replace: Evolvulus alsinoides var. decumbens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Evolvulus alsinoides villosicalyx replace: Evolvulus alsinoides var. villosicalyx reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Frankenia pauciflora fruticulosa replace: Frankenia pauciflora var. fruticulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Frankenia pauciflora gunnii replace: Frankenia pauciflora var. gunnii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Fumaria muralis boraei replace: Fumaria muralis subsp. boraei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria muralis muralis replace: Fumaria muralis subsp. muralis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria officinalis officinalis replace: Fumaria officinalis subsp. officinalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fumaria officinalis wirtgenii replace: Fumaria officinalis subsp. wirtgenii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Glycine clandestina sericea replace: Glycine clandestina var. sericea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Goodia lotifolia lotifolia replace: Goodia lotifolia var. lotifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Goodia lotifolia pubescens replace: Goodia lotifolia var. pubescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Grevillea lavandulacea lavandulacea replace: Grevillea lavandulacea subsp. lavandulacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea lavandulacea sericea replace: Grevillea lavandulacea var. sericea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Halosarcia halocnemoides halocnemoides + replace: Halosarcia halocnemoides subsp. halocnemoides + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Halosarcia halocnemoides longispicata + replace: Halosarcia halocnemoides subsp. longispicata + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Halosarcia halocnemoides tenuis + replace: Halosarcia halocnemoides subsp. tenuis + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies - find: Halosarcia indica bidens replace: Halosarcia indica subsp. bidens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia indica leiostachya replace: Halosarcia indica subsp. leiostachya reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata divaricata replace: Halosarcia pergranulata subsp. divaricata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata elongata replace: Halosarcia pergranulata subsp. elongata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata pergranulata replace: Halosarcia pergranulata subsp. pergranulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Harmsiodoxa brevipes brevipes replace: Harmsiodoxa brevipes var. brevipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Harmsiodoxa brevipes major replace: Harmsiodoxa brevipes var. major reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helichrysum ambiguum vinaceum replace: Helichrysum ambiguum subsp. vinaceum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Helichrysum bilobum scabrum replace: Helichrysum bilobum var. scabrum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Hibbertia sericea major replace: Hibbertia sericea var. major reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Hibiscus sturtii grandiflorus + replace: Hibiscus sturtii var. grandiflorus + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Hibiscus sturtii sturtii + replace: Hibiscus sturtii var. sturtii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Hibiscus trionum trionum + replace: Hibiscus trionum var. trionum + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Hibiscus trionum vesicarius + replace: Hibiscus trionum var. vesicarius + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Hordeum vulgare distichon replace: Hordeum vulgare subsp. distichon reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hordeum vulgare vulgare replace: Hordeum vulgare var. vulgare reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ixodia achillaeoides achillaeoides replace: Ixodia achillaeoides subsp. achillaeoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ixodia achillaeoides alata replace: Ixodia achillaeoides subsp. alata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ixodia achillaeoides arenicola replace: Ixodia achillaeoides subsp. arenicola reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Kickxia elatine crinita replace: Kickxia elatine subsp. crinita reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Kickxia elatine elatine replace: Kickxia elatine subsp. elatine reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium hybridum replace: Lolium x hybridum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra glauca collina replace: Lomandra glauca subsp. collina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra glauca nana replace: Lomandra glauca subsp. nana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Microcybe multiflora baccharoides replace: Microcybe multiflora subsp. baccharoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii greevesii replace: Millotia greevesii subsp. greevesii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii helmsii replace: Millotia greevesii subsp. helmsii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Millotia greevesii kempei replace: Millotia greevesii var. kempei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Millotia tenuifolia nudescens replace: Millotia tenuifolia var. nudescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Millotia tenuifolia tenuifolia replace: Millotia tenuifolia var. tenuifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Newcastelia cephalantha cephalantha replace: Newcastelia cephalantha var. cephalantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Newcastelia cephalantha tephropepla replace: Newcastelia cephalantha var. tephropepla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Olearia ciliata ciliata + replace: Olearia ciliata var. ciliata + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Olearia ciliata squamifolia + replace: Olearia ciliata var. squamifolia + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Olearia pannosa cardiophylla + replace: Olearia pannosa subsp. cardiophylla + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Olearia pannosa pannosa + replace: Olearia pannosa subsp. pannosa + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Olearia passerinoides glutescens + replace: Olearia passerinoides subsp. glutescens + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Olearia passerinoides passerinoides replace: Olearia passerinoides subsp. passerinoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Olearia pimeleoides incana + replace: Olearia incana + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Olearia pimeleoides pimeleoides + replace: Olearia pimeleoides var. pimeleoides + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Opuntia lindheimeri lindheimeri replace: Opuntia lindheimeri var. lindheimeri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Opuntia lindheimeri linguiformis replace: Opuntia lindheimeri var. linguiformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Osteocarpum acropterum acropterum replace: Osteocarpum acropterum var. acropterum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Osteocarpum acropterum deminutum replace: Osteocarpum acropterum var. deminutum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium asperum replace: Pelargonium x asperum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium domesticum replace: Pelargonium x domesticum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora gracilis replace: Pimelea curviflora var. gracilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea curviflora micrantha replace: Pimelea curviflora subsp. micrantha reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea curviflora sericea replace: Pimelea curviflora var. sericea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea flava dichotoma replace: Pimelea flava subsp. dichotoma reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea flava flava replace: Pimelea flava subsp. flava reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Pimelea microcephala glabra + replace: Pimelea microcephala subsp. glabra + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Pimelea octophylla octophylla replace: Pimelea octophylla var. octophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pimelea octophylla petraea replace: Pimelea octophylla subsp. petraea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea octophylla subvillifera replace: Pimelea octophylla subsp. subvillifera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Pimelea simplex continua + replace: Pimelea simplex subsp. continua + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies +- find: Pimelea simplex simplex + replace: Pimelea simplex subsp. simplex + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Plantago coronopus commutata replace: Plantago coronopus subsp. commutata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plantago coronopus coronopus replace: Plantago coronopus subsp. coronopus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plantago lanceolata dubia replace: Plantago lanceolata var. dubia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Plantago lanceolata lanceolata replace: Plantago lanceolata var. lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Platysace heterophylla heterophylla replace: Platysace heterophylla var. heterophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Platysace heterophylla tepperi replace: Platysace heterophylla var. tepperi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Podolepis rugata littoralis replace: Podolepis rugata subsp. littoralis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Podolepis rugata rugata replace: Podolepis rugata subsp. rugata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prasophyllum fuscum occidentale replace: Prasophyllum fuscum var. occidentale reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum fuscum validum replace: Prasophyllum fuscum var. validum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum patens patens replace: Prasophyllum patens var. patens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum patens pruinosum replace: Prasophyllum patens var. pruinosum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera serpyllifolia microphylla replace: Prostanthera serpyllifolia subsp. microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prostanthera serpyllifolia serpyllifolia replace: Prostanthera serpyllifolia subsp. serpyllifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prunus persica nectarina replace: Prunus persica var. nectarina reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prunus persica persica replace: Prunus persica var. persica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus aristatus aristatus replace: Ptilotus aristatus subsp. aristatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Ptilotus aristatus eichlerianus + replace: Ptilotus aristatus subsp. aristatus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Ptilotus exaltatus exaltatus replace: Ptilotus exaltatus var. exaltatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus exaltatus semilanatus replace: Ptilotus exaltatus var. semilanatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus gaudichaudii gaudichaudii replace: Ptilotus gaudichaudii subsp. gaudichaudii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ptilotus gaudichaudii parviflorus replace: Ptilotus gaudichaudii var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Ptilotus helipteroides helipteroides + replace: Ptilotus helipteroides var. helipteroides + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus helipteroides minor + replace: Ptilotus helipteroides var. minor + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus incanus incanus + replace: Ptilotus incanus var. incanus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Ptilotus incanus parviflorus replace: Ptilotus incanus var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Ptilotus murrayi major + replace: Ptilotus murrayi + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus murrayi murrayi + replace: Ptilotus murrayi var. murrayi + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Ptilotus nobilis angustifolius replace: Ptilotus nobilis var. angustifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus nobilis nobilis replace: Ptilotus nobilis subsp. nobilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Ptilotus obovatus griseus + replace: Ptilotus obovatus var. griseus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus obovatus obovatus + replace: Ptilotus obovatus var. obovatus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus parvifolius laetus + replace: Ptilotus parvifolius var. laetus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus parvifolius parvifolius + replace: Ptilotus parvifolius + reason: Manual alignment with synonymous term among known canonical names APC (E. + Wenk, 2023-05-24) + taxonomic_resolution: varietas +- find: Ptilotus polystachyus polystachyus + replace: Ptilotus polystachyus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: forma +- find: Ptilotus spathulatus angustatus + replace: Ptilotus spathulatus f. angustatus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: forma +- find: Ptilotus spathulatus spathulatus + replace: Ptilotus spathulatus f. spathulatus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: forma - find: Pultenaea canaliculata canaliculata replace: Pultenaea canaliculata var. canaliculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea canaliculata latifolia replace: Pultenaea canaliculata var. latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea rigida ovata replace: Pultenaea rigida var. ovata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea rigida rigida replace: Pultenaea rigida var. rigida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea teretifolia brachyphylla replace: Pultenaea teretifolia var. brachyphylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pultenaea teretifolia teretifolia replace: Pultenaea teretifolia var. teretifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pentandrus pentandrus replace: Ranunculus pentandrus var. pentandrus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pentandrus platycarpus replace: Ranunculus pentandrus var. platycarpus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pumilio politus replace: Ranunculus pumilio var. politus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus pumilio pumilio replace: Ranunculus pumilio var. pumilio reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus sessiliflorus pilulifer replace: Ranunculus sessiliflorus var. pilulifer reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ranunculus sessiliflorus sessiliflorus replace: Ranunculus sessiliflorus var. sessiliflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rhagodia candolleana argentea replace: Rhagodia candolleana subsp. argentea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhagodia candolleana candolleana replace: Rhagodia candolleana subsp. candolleana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rostellularia adscendens clementii replace: Rostellularia adscendens subsp. clementii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex dumosus dumosiformis replace: Rumex dumosus var. dumosiformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rumex pulcher divaricatus replace: Rumex pulcher subsp. divaricatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rumex pulcher pulcher replace: Rumex pulcher subsp. pulcher reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola albida pallida replace: Scaevola albida var. pallida reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola linearis confertifolia replace: Scaevola linearis subsp. confertifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Scaevola linearis linearis + replace: Scaevola linearis subsp. linearis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies - find: Sclerolaena muricata muricata replace: Sclerolaena muricata var. muricata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sclerolaena muricata semiglabra replace: Sclerolaena muricata var. semiglabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sclerolaena muricata villosa replace: Sclerolaena muricata var. villosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Senecio cunninghamii cunninghamii + replace: Senecio cunninghamii var. cunninghamii + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Senecio cunninghamii serratus + replace: Senecio lanibracteus + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas - find: Senecio odoratus longifolius replace: Senecio odoratus var. longifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio odoratus obtusifolius replace: Senecio odoratus var. obtusifolius reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio orarius replace: Senecio x orarius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida corrugata angustifolia replace: Sida corrugata var. angustifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sida corrugata corrugata replace: Sida corrugata var. corrugata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Silene gallica gallica replace: Silene gallica var. gallica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Silene gallica quinquevulnera replace: Silene gallica var. quinquevulnera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sonchus asper asper replace: Sonchus asper subsp. asper reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sonchus asper glaucescens replace: Sonchus asper subsp. glaucescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spartina townsendii replace: Spartina x townsendii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium bifidum bifidum replace: Spyridium bifidum subsp. bifidum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Spyridium bifidum integrifolium replace: Spyridium bifidum var. integrifolium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium eriocephalum eriocephalum replace: Spyridium eriocephalum var. eriocephalum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium eriocephalum glabrisepalum replace: Spyridium eriocephalum var. glabrisepalum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum halmaturinum replace: Spyridium halmaturinum var. halmaturinum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum integrifolium replace: Spyridium halmaturinum var. integrifolium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium halmaturinum scabridum replace: Spyridium halmaturinum var. scabridum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium subochreatum laxiusculum replace: Spyridium subochreatum var. laxiusculum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium subochreatum subochreatum replace: Spyridium subochreatum var. subochreatum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium vexilliferum latifolium replace: Spyridium vexilliferum var. latifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Spyridium vexilliferum vexilliferum replace: Spyridium vexilliferum var. vexilliferum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stellaria palustris palustris replace: Stellaria palustris reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stellaria palustris tenella replace: Stellaria palustris var. tenella reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona canescens horniana replace: Swainsona canescens var. horniana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microcalyx adenophylla replace: Swainsona microcalyx var. adenophylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla affinis replace: Swainsona microphylla var. affinis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla glabrescens replace: Swainsona microphylla subsp. glabrescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Swainsona microphylla minima replace: Swainsona microphylla var. minima reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona microphylla pallescens replace: Swainsona microphylla subsp. pallescens reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Swainsona microphylla tomentosa replace: Swainsona microphylla var. tomentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona murrayana eciliata replace: Swainsona murrayana subsp. eciliata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium grandiusculum grandiusculum replace: Teucrium grandiusculum subsp. grandiusculum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium grandiusculum pilosum replace: Teucrium grandiusculum subsp. pilosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Thysanotus tuberosus parviflorus replace: Thysanotus tuberosus subsp. parviflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Thysanotus tuberosus tuberosus replace: Thysanotus tuberosus subsp. tuberosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Trachymene ornata ornata replace: Trachymene ornata var. ornata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Trachymene ornata semilanata replace: Trachymene ornata var. semilanata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Triglochin ovoideum replace: Triglochin ovoidea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia irritans compacta replace: Triodia irritans var. compacta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Triodia irritans laxispicata replace: Triodia irritans var. laxispicata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Vicia sativa cordata replace: Vicia sativa subsp. cordata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vicia sativa nigra replace: Vicia sativa subsp. nigra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vicia sativa sativa replace: Vicia sativa subsp. sativa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Villarsia umbricola beaugleholei + replace: Villarsia umbricola var. beaugleholei + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Villarsia umbricola umbricola + replace: Villarsia umbricola var. umbricola + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2023-05-24) + taxonomic_resolution: varietas +- find: Vittadinia australasica oricola + replace: Vittadinia australasica var. oricola + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Vittadinia australasica subglabra + replace: Vittadinia australasica var. subglabra + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas +- find: Vittadinia cuneata cuneata + replace: Vittadinia cuneata var. cuneata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas - find: Vittadinia cuneata morrisii replace: Vittadinia cuneata var. morrisii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Vittadinia cuneata murrayensis + replace: Vittadinia cuneata var. murrayensis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: varietas - find: Xanthorrhoea semiplana semiplana replace: Xanthorrhoea semiplana subsp. semiplana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthorrhoea semiplana tateana replace: Xanthorrhoea semiplana subsp. tateana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthosia dissecta floribunda replace: Xanthosia dissecta var. floribunda reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas -- find: Brachycome ciliaris brachyglossa - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Brachycome ciliaris var. brachyglossa - taxonomic_resolution: Varietas -- find: Brachycome ciliaris ciliaris - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-05-24) - replace: Brachyscome ciliaris var. ciliaris - taxonomic_resolution: Varietas -- find: Brachycome ciliaris lyrifolia - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Brachycome ciliaris var. lyrifolia - taxonomic_resolution: Varietas -- find: Brachycome ciliaris subintegrifolia - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Brachycome ciliaris var. subintegrifolia - taxonomic_resolution: Varietas -- find: Halosarcia halocnemoides halocnemoides - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Halosarcia halocnemoides subsp. halocnemoides - taxonomic_resolution: Subspecies -- find: Halosarcia halocnemoides longispicata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Halosarcia halocnemoides subsp. longispicata - taxonomic_resolution: Subspecies -- find: Halosarcia halocnemoides tenuis - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2023-05-24) - replace: Halosarcia halocnemoides subsp. tenuis - taxonomic_resolution: Subspecies + taxonomic_resolution: varietas +- find: Zostera muelleri muelleri + replace: Zostera muelleri subsp. muelleri + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-05-24) + taxonomic_resolution: subspecies exclude_observations: - variable: taxon_name find: Riccia corrugata diff --git a/data/Sams_2017/metadata.yml b/data/Sams_2017/metadata.yml index f8f0a4066..68aa7a6d0 100644 --- a/data/Sams_2017/metadata.yml +++ b/data/Sams_2017/metadata.yml @@ -38,7 +38,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `sla.mean.site` = coalesce(as.character(`sla.mean.site`), as.character(SLA_no_site)), @@ -188,7 +188,9 @@ contexts: var_in: method_context values: - value: multi-site means - description: These samples were colelcted at multiple sites, but they are assigned to the lat/lon of a single site; the data.csv file records the names of the multiple sites. + description: These samples were colelcted at multiple sites, but they are assigned + to the lat/lon of a single site; the data.csv file records the names of the + multiple sites. - value: population means description: These samples were colelcted a single site. traits: @@ -500,81 +502,81 @@ taxonomic_updates: - find: Aceriatum sericoleopsis replace: Aceratium sericoleopsis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium villosum.polyosmoides replace: Alangium villosum subsp. polyosmoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Archidendron vallantii replace: Archidendron vaillantii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Archidendron whitii replace: Archidendron whitei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron peratelum replace: Argyrodendron peralatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp.Boonji replace: Argyrodendron sp. Boonjie (B.P.Hyland RFK 2139) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron trifoliatum replace: Argyrodendron trifoliolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Attractocarpus merikin replace: Atractocarpus merikin reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromeullera trinervia replace: Austromuellera trinervia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beilschmedia brunnea replace: Beilschmiedia brunnea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bridiella leichhardtii replace: Bridelia leichhardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cloaxylon australe replace: Claoxylon australe reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya triplonervis.var.pubens replace: Cryptocarya triplinervis var. pubens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cupaniospsis flagelliformis replace: Cupaniopsis flagelliformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra apetala replace: Daphnandra apatela reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra rapandula replace: Daphnandra repandula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darlingia ferrugenia replace: Darlingia ferruginea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Delarbrea micheana replace: Delarbrea michieana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Emmenosperma alphitoniodes replace: Emmenosperma alphitonioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylon sp replace: Erythroxylum sp. [Sams_2017] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -583,181 +585,181 @@ taxonomic_updates: - find: Euroschinis falcatus.var.falcatus replace: Euroschinus falcatus var. falcatus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ficus fraserii replace: Ficus fraseri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geissios benthami replace: Geissois benthami reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidian hylandii replace: Glochidion hylandii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossia bidwilli replace: Gossia bidwillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gossia dallachania replace: Gossia dallachiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guilfolya monostylis replace: Guilfoylia monostylis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplosticanthus submontanus replace: Haplostichanthus submontanus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harpulia rhytocarpa replace: Harpullia rhyticarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedycarya loxocarya? replace: Hedycarya loxocarya reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicia glabrifolia replace: Helicia glabriflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hylandea dockrillii replace: Hylandia dockrillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macaranga inoemena replace: Macaranga inamoena reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotsus polyadenos replace: Mallotus polyadenos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallotus phillipensis replace: Mallotus philippensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melia azedarch replace: Melia azedarach reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicope vitaflora replace: Melicope vitiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neolitsia australiensis replace: Neolitsea australiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Notolea longifolia replace: Notelaea longifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opisthiolepus heterophylla replace: Opisthiolepis heterophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum mulitflorum replace: Pittosporum multiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella myrsinoidendron replace: Planchonella myrsinodendron reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycias elegens replace: Polyscias elegans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudavarius hylandia replace: Pseuduvaria hylandii reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodomyrtus trineura.ssp.capensis replace: Rhodomyrtus trineura subsp. capensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Siphonodon australia replace: Siphonodon australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Siphonodon membranaceous replace: Siphonodon membranaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloenea australis replace: Sloanea australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloenea langii replace: Sloanea langii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloenea macbriddii replace: Sloanea macbrydei reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloenea woollsii replace: Sloanea woollsii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum corifolum replace: Solanum corifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocus hayesii replace: Symplocos hayesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocus pauscistamenia replace: Symplocos paucistaminea reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzigium mulgraveana replace: Syzygium mulgraveanum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarrenia dallachania replace: Tarenna dallachiana reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Toechima erythrocarpa replace: Toechima erythrocarpum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vanroyena castanosperma replace: Van-royena castanosperma reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkea chordata replace: Wilkiea cordata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkea huegeliana replace: Wilkiea hugeliana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkea longipes replace: Wilkiea longipes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zanthoxylum ovatiflorum replace: Zanthoxylum ovalifolium reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zanthoxylum venicum replace: Zanthoxylum veneficum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Santini_2012/metadata.yml b/data/Santini_2012/metadata.yml index 2b346642a..194e0d81e 100644 --- a/data/Santini_2012/metadata.yml +++ b/data/Santini_2012/metadata.yml @@ -64,7 +64,8 @@ dataset: NZ and one in WA), we assessed the porewater salinity. We collected water samples from 30 cm depth using a suction device (McKee et al. 1988) and analysed them with a handheld refractometer (W/ATC 300011, SPER Scientific Scottsdale, USA). - original_file: AusTRAITS_Santini (1).xls and Wood_structure_AvicenniaNZ_and_WA-units.xlsx in raw data folder + original_file: AusTRAITS_Santini (1).xls and Wood_structure_AvicenniaNZ_and_WA-units.xlsx + in raw data folder notes: none locations: Giralia Bay, Exmouth Gulf, Western Australia: diff --git a/data/Santini_2013/metadata.yml b/data/Santini_2013/metadata.yml index 922204976..ecffcd495 100644 --- a/data/Santini_2013/metadata.yml +++ b/data/Santini_2013/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( CollectionDate = CollectionDate %>% dmy(), @@ -69,7 +69,8 @@ dataset: we also assessed the proportion of phloem per layer of wood as described in Santini et al. 2012) and branch characteristics (the proportion of branch diameter that comprised pith and bark). - original_file: AusTRAITS_Instron1stcollection.xls and AusTRAITS_Instron2ndcollectionAnatomy.xls in raw data folder + original_file: AusTRAITS_Instron1stcollection.xls and AusTRAITS_Instron2ndcollectionAnatomy.xls + in raw data folder notes: Some species were collected at both sites, but currently we only have metapopulation means and the values have been assigned to the Point Halloran Reserve site even if the species grows at both sites. diff --git a/data/Santini_2016/metadata.yml b/data/Santini_2016/metadata.yml index 2494f09f9..c56030745 100644 --- a/data/Santini_2016/metadata.yml +++ b/data/Santini_2016/metadata.yml @@ -39,7 +39,7 @@ contributors: dataset_curators: Gillian Kowalick, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(stem_vessel_diameter = (`Vessel diameter a (u)`+`Vessel diameter b (u)`)/2) ' @@ -342,14 +342,14 @@ traits: value is taken to indicate a large resistance to drought (Carlquist 1977). substitutions: .na taxonomic_updates: -- find: Hakea sp. - replace: Hakea sp. [Santini_2016] - reason: Reformat genus-level name to include dataset_id (E. Wenk, 2023-05-11) - taxonomic_resolution: Genus - find: Eucalyptus camadulensis replace: Eucalyptus camaldulensis reason: Correct typo to align with APC (E. Wenk, 2023-05-11) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hakea sp. + replace: Hakea sp. [Santini_2016] + reason: Reformat genus-level name to include dataset_id (E. Wenk, 2023-05-11) + taxonomic_resolution: genus exclude_observations: .na questions: additional_traits: This study also includes data for conductive area, fibre wall diff --git a/data/Schmidt_1993/metadata.yml b/data/Schmidt_1993/metadata.yml index df2e866af..2936b596a 100644 --- a/data/Schmidt_1993/metadata.yml +++ b/data/Schmidt_1993/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( nitrogen_fixing = stringr::str_extract(`mycorrhizal status`,"nod"), @@ -242,304 +242,304 @@ substitutions: find: .na.character replace: non_mycorrhizal taxonomic_updates: -- find: Caladenia sp. - replace: Caladenia sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cardamine sp. - replace: Cardamine sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corybas sp. - replace: Corybas sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dianella sp. - replace: Dianella sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diuris sp. - replace: Diuris sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Goodenia sp. - replace: Goodenia sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pandanus sp. - replace: Pandanus sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pterostylis sp. - replace: Pterostylis sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stenopetalum sp. - replace: Stenopetalum sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thelymitra sp. - replace: Thelymitra sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trachymene sp. - replace: Trachymene sp. [Schmidt_1993] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia michellii replace: Acacia mitchellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia pulcella replace: Acacia pulchella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia utophylla replace: Acacia urophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotis helianthi replace: Actinotus helianthi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agonis lincarifolia replace: Agonis linearifolia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Avillinia mitchellii replace: Avellinia michelii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksiapaludosa replace: Banksia paludosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blenospora drummondii replace: Blennospora drummondii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borhavia tetrandra replace: Boronia tetrandra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachycome liniariloba replace: Brachyscome lineariloba reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia australia replace: Brunonia australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Caladenia sp. + replace: Caladenia sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calistemon macropunctatus replace: Callistemon macropunctatus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calltris columellaris replace: Callitris columellaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cardamine sp. + replace: Cardamine sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Coltula turbinata replace: Cotula turbinata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conyza canadiensis replace: Conyza canadensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Corybas sp. + replace: Corybas sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dianella sp. + replace: Dianella sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Diuris sp. + replace: Diuris sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Drosera erythorrhiza replace: Drosera erythrorhiza reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis phillipica replace: Eragrostis philippica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia cyanthophora replace: Euphorbia cyathophora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glischrocaryou behrii replace: Glischrocaryon behrii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium luteo-album replace: Gnaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pimulacea replace: Goodenia primulacea reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Goodenia sp. + replace: Goodenia sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Grevillea lavandulaceae replace: Grevillea lavandulacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea querecifolia replace: Grevillea quercifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia communata replace: Hibbertia commutata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypolaena fastigata replace: Hypolaena fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Impera cylindrica replace: Imperata cylindrica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera ausralis replace: Indigofera australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Labicea punctata replace: Labichea punctata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum bractatum replace: Lasiopetalum bracteatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Laxmannia sessilifoilia replace: Laxmannia sessiliflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma augustatum replace: Lepidosperma angustatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon cleandii replace: Leucopogon clelandii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia tenuior ? replace: Lobelia tenuior reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca latericia replace: Melaleuca lateritia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxylobium liniarifolium replace: Oxylobium linariifolium reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pandanus sp. + replace: Pandanus sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Platylobium formosa replace: Platylobium formosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podotheca angustifolius replace: Podotheca angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderris eliptica replace: Pomaderris elliptica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderris obocordata replace: Pomaderris obcordata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psapalidium dilatatum replace: Paspalum dilatatum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psapalidium gracile replace: Paspalidium gracile reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pteridum esculentum replace: Pteridium esculentum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. + replace: Pterostylis sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ptilanthelium deustem replace: Ptilanthelium deustum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus polystachus replace: Ptilotus polystachyus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea daphnoides replace: Pultenaea daphnoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea elliptica replace: Pultenaea elliptica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea obovata replace: Pultenaea obovata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea scabra replace: Pultenaea scabra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhizinocarpus pinifolius replace: Ricinocarpos pinifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sowerbea laxiflora replace: Sowerbaea laxiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spiridium eriocephalum replace: Spyridium eriocephalum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spiridium parvifolium replace: Spyridium parvifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Stenopetalum sp. + replace: Stenopetalum sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Stylidium junccum replace: Stylidium junceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelymitra sp. + replace: Thelymitra sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Thomasiarhynchocarpa replace: Thomasia rhynchocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus junctifolius replace: Thysanotus juncifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tibulus cistoides replace: Tribulus cistoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trachymene pusillus replace: Trachymene sp. [Trachymene pusillus; Schmidt_1993] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Trachymene sp. + replace: Trachymene sp. [Schmidt_1993] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Trymalium d'altonii replace: Trymalium daltonii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea preisii replace: Xanthorrhoea preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zaluzianyska divaricata replace: Zaluzianskya divaricata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziera smithii replace: Zieria smithii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Trachymene pusillus diff --git a/data/Schmidt_1997/metadata.yml b/data/Schmidt_1997/metadata.yml index 6bc4212e1..c9a661e8a 100644 --- a/data/Schmidt_1997/metadata.yml +++ b/data/Schmidt_1997/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(`gen spp`, site_text) %>% mutate(observation_num = row_number()) %>% @@ -259,46 +259,46 @@ taxonomic_updates: - find: Baurera capitata replace: Bauera capitata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum taxifluim replace: Conospermum taxifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillynia floribunda replace: Dillwynia floribunda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Empodesma minus replace: Empodisma minus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris pulcella replace: Epacris pulchella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon myropoides replace: Eriostemon myoporoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca quinquinervia replace: Melaleuca quinquenervia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea paleacea replace: Pultenaea paleacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanaea villosa replace: Pultenaea villosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanea paleacaea replace: Pultenaea paleacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanea paleacea replace: Pultenaea paleacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Schmidt_2003/metadata.yml b/data/Schmidt_2003/metadata.yml index a14f7a7f7..cfd21ba3e 100644 --- a/data/Schmidt_2003/metadata.yml +++ b/data/Schmidt_2003/metadata.yml @@ -40,7 +40,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( resprouting_capacity = ifelse(life_history == "r", "resprouts", NA), @@ -626,142 +626,38 @@ substitutions: find: a/p replace: annual perennial taxonomic_updates: -- find: Acacia sp. - replace: Acacia sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bruguiera sp. - replace: Bruguiera sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cayratia sp. - replace: Cayratia sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Centipeda sp. - replace: Centipeda sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Commelina sp. - replace: Commelina sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyperus sp. - replace: Cyperus sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dampiera sp. - replace: Dampiera sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dianella sp. - replace: Dianella sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dunbaria sp. - replace: Dunbaria sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Euphorbia sp. - replace: Euphorbia sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Excoecaria sp. - replace: Excoecaria sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Fimbristylis sp. - replace: Fimbristylis sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glinus sp. - replace: Glinus sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gmelina sp. - replace: Gmelina sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Goodenia sp. - replace: Goodenia sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hyptis sp. - replace: Hyptis sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Limnophila sp. - replace: Limnophila sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lindsaea sp. - replace: Lindsaea sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Livistona sp. - replace: Livistona sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lomandra sp. - replace: Lomandra sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lumnitzera sp. - replace: Lumnitzera sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pluchea sp. - replace: Pluchea sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Polygala sp. - replace: Polygala sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sauropus sp. - replace: Sauropus sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scleria sp. - replace: Scleria sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Senna sp. - replace: Senna sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thecanthes sp. - replace: Pimelea sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thespesia sp. - replace: Thespesia sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Uraria sp. - replace: Uraria sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Waltheria sp. - replace: Waltheria sp. [Schmidt_2003] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia aulac replace: Acacia aulacocarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia convalium replace: Acacia convallium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia gonocarpus replace: Acacia gonocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. + replace: Acacia sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Alysicarpus glum replace: Alysicarpus glumaceus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Bruguiera sp. + replace: Bruguiera sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cayratia sp. + replace: Cayratia sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Centipeda sp. + replace: Centipeda sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chlerode replace: Clerodendrum sp. [Chlerode; Schmidt_2003] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -777,19 +673,39 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Commelina sp. + replace: Commelina sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyperus sp. + replace: Cyperus sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dampiera sp. + replace: Dampiera sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: De. sp.A replace: Desmodium sp. [De. sp.A; Schmidt_2003] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Dianella sp. + replace: Dianella sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Diospyrus calycantha replace: Diospyros calycantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Distichostemon arhemicus replace: Distichostemon arnhemicus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dunbaria sp. + replace: Dunbaria sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Epimered replace: Epimeredi sp. [Epimered; Schmidt_2003] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -798,37 +714,85 @@ taxonomic_updates: - find: Eucalyptus camadulensis replace: Eucalyptus camaldulensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dichromophoia replace: Eucalyptus dichromophloia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Euphorbia sp. + replace: Euphorbia sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Excoecaria sp. + replace: Excoecaria sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Exocarpus latifolius replace: Exocarpos latifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis comp replace: Fimbristylis complanata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Fimbristylis sp. + replace: Fimbristylis sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glinus sp. + replace: Glinus sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gmelina sp. + replace: Gmelina sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Goodenia sp. + replace: Goodenia sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hibiscus tiliacus replace: Hibiscus tiliaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hyptis sp. + replace: Hyptis sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leprocar replace: Leptocarpus sp. [Leprocar; Schmidt_2003] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Limnophila sp. + replace: Limnophila sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lindsaea sp. + replace: Lindsaea sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Livistona sp. + replace: Livistona sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Livistonia benthamii replace: Livistona benthamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lomandra sp. + replace: Lomandra sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lumnitzera sp. + replace: Lumnitzera sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Melastoma malabathricum ssp. Malabathricum replace: Melastoma malabathricum subsp. malabathricum reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myrtella replace: Myrtella sp. [Myrtella; Schmidt_2003] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -852,46 +816,82 @@ taxonomic_updates: - find: Petalostigma quadiloculara replace: Petalostigma quadriloculare reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus qrandisepalus replace: Phyllanthus grandisepalus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pluchea sp. + replace: Pluchea sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Polygala sp. + replace: Polygala sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sauropus sp. + replace: Sauropus sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Scleria sp. + replace: Scleria sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Se. sp. replace: Senna sp. [Se. sp.; Schmidt_2003] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Senna sp. + replace: Senna sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sterculia quadridrifida replace: Sterculia quadrifida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium minutiflorum replace: Syzygium minutuliflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia platy replace: Terminalia sp. [Terminalia platyptera or Terminalia platyphylla; Schmidt_2003] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Terminalia seriocarpa replace: Terminalia sericocarpa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thecanthes sp replace: Pimelea sp. [Schmidt_2003] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Thecanthes sp. + replace: Pimelea sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thespesia sp. + replace: Thespesia sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tr. Po.s replace: Trianthema portulacastrum [Tr. Po.s; Schmidt_2003] reason: Manual match to species (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Uraria sp. + replace: Uraria sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Vetiveri replace: Chrysopogon zizanioides reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Waltheria sp. + replace: Waltheria sp. [Schmidt_2003] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: - variable: taxon_name find: Br. gran, Ep., Br. sp., Ep. hert, Ep. hete, Ep. sp., Ep., Gd. furc, Ha., holly diff --git a/data/Schmidt_2010/metadata.yml b/data/Schmidt_2010/metadata.yml index 0b0d0c3da..a767c48dd 100644 --- a/data/Schmidt_2010/metadata.yml +++ b/data/Schmidt_2010/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `%N` = na_if(`%N`, "no sample vial"), @@ -397,18 +397,18 @@ taxonomic_updates: - find: Acacia sp. replace: Acacia sp. [Schmidt_2010] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Cenchus ciliaris + replace: Cenchrus ciliaris + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Hakea sp. replace: Hakea sp. [Schmidt_2010] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Triodia sp. replace: Triodia sp. [Schmidt_2010] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cenchus ciliaris - replace: Cenchrus ciliaris - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Schulze_1998/metadata.yml b/data/Schulze_1998/metadata.yml index 306f5925f..a167a5da2 100644 --- a/data/Schulze_1998/metadata.yml +++ b/data/Schulze_1998/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( N_area_young_mg_per_m2 = `N [mg/g]_young`*1000/SLA_young, @@ -521,23 +521,23 @@ taxonomic_updates: - find: Brachychiton megaphylla replace: Brachychiton megaphyllus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus conferiflora replace: Eucalyptus confertiflora reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gummiphylla replace: Eucalyptus gummifera reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus nesophilla replace: Eucalyptus nesophila reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tectifera replace: Eucalyptus tectifica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus terminalis/opaca replace: Eucalyptus sp. [Eucalyptus terminalis/opaca; Schulze_1998] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -546,24 +546,24 @@ taxonomic_updates: - find: Eucalyptus tetradonta replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucayptus papuana replace: Eucalyptus papuana reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea pryamidalis replace: Grevillea pyramidalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea aborescens replace: Hakea arborescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiphyllum cunningamii replace: Lysiphyllum cunninghamii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca? replace: Melaleuca sp. [Melaleuca?; Schulze_1998] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) diff --git a/data/Schulze_2006/metadata.yml b/data/Schulze_2006/metadata.yml index a73ac0c03..50e68e6d8 100644 --- a/data/Schulze_2006/metadata.yml +++ b/data/Schulze_2006/metadata.yml @@ -48,7 +48,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Currency Creek Arboretum") + custom_R_code: data %>% mutate(site_name = "Currency Creek Arboretum") collection_date: 2004/2004 taxon_name: Name location_name: site_name @@ -120,80 +120,80 @@ taxonomic_updates: - find: Eucalyptus baeverlenii replace: Eucalyptus baeuerlenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanopelex replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus callophylla replace: Eucalyptus calophylla reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus communalis replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dorotoxylon replace: Eucalyptus doratoxylon reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus fursiformis replace: Eucalyptus fusiformis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus juanda replace: Eucalyptus jucunda reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus kondinensis replace: Eucalyptus kondininensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lesovefii replace: Eucalyptus lesouefii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus levcoxylon Vic replace: Eucalyptus leucoxylon reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus minigwalica replace: Eucalyptus minigwalica MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus molluccana replace: Eucalyptus moluccana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus noctonii replace: Eucalyptus nortonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus petrea replace: Eucalyptus petraea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus psammatica replace: Eucalyptus psammitica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus redimulicifera replace: Eucalyptus redimiculifera reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tephroides replace: Eucalyptus tephrodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ultimata replace: Eucalyptus ultima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Schulze_2006_2/metadata.yml b/data/Schulze_2006_2/metadata.yml index 6a7b6a424..ed4fefebc 100644 --- a/data/Schulze_2006_2/metadata.yml +++ b/data/Schulze_2006_2/metadata.yml @@ -43,7 +43,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(`Sprouter or obligate Seeder`), replace_duplicates_with_NA)) %>% @@ -489,7 +489,7 @@ taxonomic_updates: replace: Corymbia chippendalei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aff. aequioperta replace: Eucalyptus sp. [Eucalyptus aff. aequioperta; Schulze_2006_2] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -499,61 +499,61 @@ taxonomic_updates: replace: Eucalyptus alipes reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dendrosheath replace: Eucalyptus dendrosheath MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus kingsmillii - Eucalyptus youngiana intergrade replace: Eucalyptus sp. [Eucalyptus kingsmillii - Eucalyptus youngiana intergrade] reason: Manual match to genus for intergrade taxon (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus loxophleba ssp.lissophloia replace: Eucalyptus loxophleba subsp. lissophloia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus oldfieldii subsp. pauper ms replace: Eucalyptus oldfieldii subsp. paupera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus samonophloia replace: Eucalyptus salmonophloia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus soziales replace: Eucalyptus socialis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus yilarnensis replace: Eucalyptus yilgarnensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptusflocktoniae subsp. flocktonia replace: Eucalyptus flocktoniae subsp. flocktoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptusjutsonii replace: Eucalyptus jutsonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptusyoungiana replace: Eucalyptus youngiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Probably Eucalyptus socialis - Eucalyptus hypolaena intergrade replace: Eucalyptus sp. [probably Eucalyptus socialis - Eucalyptus hypolaena intergrade] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: putative Eucalyptus carnei x Eucalyptus salubris - replace: Eucalyptus sp. [putative Eucalyptus carnei x Eucalyptus salubris] - reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-12) - taxonomic_resolution: Genus - find: Syn. Eucalyptus transcontinentalis subsp. semivestita replace: Eucalyptus transcontinentalis subsp. semivestita reason: Manual alignment with canonical subspecies name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: putative Eucalyptus carnei x Eucalyptus salubris + replace: Eucalyptus sp. [putative Eucalyptus carnei x Eucalyptus salubris] + reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-12) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Schulze_2014/metadata.yml b/data/Schulze_2014/metadata.yml index 77393274c..f4a5cafa2 100644 --- a/data/Schulze_2014/metadata.yml +++ b/data/Schulze_2014/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk, Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Date_to_use_edited = Date_to_use_edited %>% mdy(), @@ -1043,32 +1043,42 @@ taxonomic_updates: replace: Acacia sp. [Acacia 1; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia 1, bubble replace: Acacia sp. [Acacia 1, bubble; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia 2 replace: Acacia sp. [Acacia 2; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia 3 phylloclad replace: Acacia sp. [Acacia 3 phylloclad; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia 3, semiprickly replace: Acacia sp. [Acacia 3, semiprickly; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Acacia Callitris-like + replace: Acacia sp. [Acacia Callitris-like; Schulze_2014] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-10) + taxonomic_resolution: genus +- find: Acacia Grevillea-like + replace: Acacia sp. [Acacia Grevillea-like; Schulze_2014] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-10) + taxonomic_resolution: genus - find: Acacia aneura? replace: Acacia aneura reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia another big leaf replace: Acacia sp. [Acacia another big leaf; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1093,12 +1103,12 @@ taxonomic_updates: replace: Acacia sp. [blue leaf; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia blue legume, broome-like replace: Acacia sp. [blue legume, broome-like; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia boring replace: Acacia sp. [Acacia boring; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1108,17 +1118,17 @@ taxonomic_updates: replace: Acacia sp. [broad leaf; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia broad leaf tree replace: Acacia sp. [broad leaf tree; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia broad pod replace: Acacia sp. [broad pod; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia bungle linear replace: Acacia sp. [Acacia bungle linear; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1134,16 +1144,11 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Acacia Callitris-like - replace: Acacia sp. [Acacia Callitris-like; Schulze_2014] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-10) - taxonomic_resolution: genus - find: Acacia corky replace: Acacia sp. [corky; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia dwarf shrub replace: Acacia sp. [Acacia dwarf shrub; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1158,7 +1163,7 @@ taxonomic_updates: replace: Acacia sp. [falcate leaf; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia fine leaf replace: Acacia sp. [Acacia fine leaf; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1194,11 +1199,6 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Acacia Grevillea-like - replace: Acacia sp. [Acacia Grevillea-like; Schulze_2014] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-10) - taxonomic_resolution: genus - find: Acacia grey mulga replace: Acacia sp. [Acacia grey mulga; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1208,32 +1208,32 @@ taxonomic_updates: replace: Acacia sp. [Acacia in Euc; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia in flower replace: Acacia sp. [Acacia in flower; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia lanceolate leaf replace: Acacia sp. [lanceolate leaf; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia leafy replace: Acacia sp. [leafy; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia linear replace: Acacia sp. [Acacia linear; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia linear 1 replace: Acacia sp. [Acacia linear 1; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia linear 1 (same as 33.1) replace: Acacia sp. [Acacia linear 1 (same as 33.1); Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1243,7 +1243,7 @@ taxonomic_updates: replace: Acacia sp. [Acacia linear 2; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia linear acuminata replace: Acacia sp. [Acacia linear acuminata; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1273,17 +1273,17 @@ taxonomic_updates: replace: Acacia rhodophloia [Acacia minniritchi bark; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia minniritchi bark shrub replace: Acacia minniritchi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia minniritchy bark replace: Acacia rhodophloia [Acacia minniritchy bark; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia needle replace: Acacia sp. [Acacia needle; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1292,7 +1292,7 @@ taxonomic_updates: - find: Acacia oblong replace: Acacia oblonga reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia oval leaf, friendly? replace: Acacia sp. [Acacia oval leaf, friendly?; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1317,12 +1317,12 @@ taxonomic_updates: replace: Acacia sp. [phylloids; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia pindanica replace: Acacia sp. [Acacia pindanica; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia prickly replace: Acacia sp. [Acacia prickly; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1332,7 +1332,7 @@ taxonomic_updates: replace: Acacia sp. [ribbon; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia shiny green leaf replace: Acacia sp. [Acacia shiny green leaf; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1362,36 +1362,16 @@ taxonomic_updates: replace: Acacia sp. [Acacia small; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia smoke bush-like replace: Acacia sp. [Acacia smoke bush-like; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Acacia sp. [Acacia linear 1; Schulze_2014] - replace: Acacia sp. [Acacia linear 1; Schulze_2014] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Acacia sp. [Acacia linear 2; Schulze_2014] - replace: Acacia sp. [Acacia linear 2; Schulze_2014] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Acacia sp. [Acacia linear; Schulze_2014] - replace: Acacia sp. [Acacia linear; Schulze_2014] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Acacia sp. [Acacia waxy; Schulze_2014] - replace: Acacia sp. [Acacia waxy; Schulze_2014] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus - find: Acacia spatulate replace: Acacia spatulata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia strap leaf replace: Acacia sp. [Acacia strap leaf; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1406,17 +1386,17 @@ taxonomic_updates: replace: Acacia sp. [thorny; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia waxy replace: Acacia sp. [Acacia waxy; Schulze_2014] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia waxy falcate replace: Acacia sp. [waxy falcate; Schulze_2014]] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia with thorns replace: Acacia sp. [Acacia with thorns; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1446,68 +1426,68 @@ taxonomic_updates: replace: Acacia aneura reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia aneura var. argentea? replace: Acacia aneura var. argentea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia aneura var. conifera? replace: Acacia aneura var. conifera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia aneura var. microcarpa? replace: Acacia aneura var. microcarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia bircittii replace: Acacia burkittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia citrioviridis replace: Acacia citrinoviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia coolgardiensis subsp. effusa? replace: Acacia coolgardiensis subsp. effusa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia cuthbertsonii subsp. linearis? replace: Acacia cuthbertsonii subsp. linearis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia leptocarpa? (?sp. nov.) replace: Acacia leptocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia oblong replace: Acacia oblonga reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia prunocarpa replace: Acacia pruinocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ramulosa var. ramulosa? replace: Acacia ramulosa var. ramulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia resinimarginea? replace: Acacia resinimarginea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia rhodophloia creek minniritchy replace: Acacia rhodophloia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. replace: Acacia sp. [Schulze_2014] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1533,38 +1513,58 @@ taxonomic_updates: reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Acacia sp. [Acacia linear 1; Schulze_2014] + replace: Acacia sp. [Acacia linear 1; Schulze_2014] + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2022-11-22) + taxonomic_resolution: genus +- find: Acacia sp. [Acacia linear 2; Schulze_2014] + replace: Acacia sp. [Acacia linear 2; Schulze_2014] + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2022-11-22) + taxonomic_resolution: genus +- find: Acacia sp. [Acacia linear; Schulze_2014] + replace: Acacia sp. [Acacia linear; Schulze_2014] + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2022-11-22) + taxonomic_resolution: genus +- find: Acacia sp. [Acacia waxy; Schulze_2014] + replace: Acacia sp. [Acacia waxy; Schulze_2014] + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2022-11-22) + taxonomic_resolution: genus - find: Acacia suberosa larix-like replace: Acacia suberosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia thompsonii replace: Acacia thomsonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia tumida subsp. tumida replace: Acacia tumida var. tumida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia xinophylla replace: Acacia xiphophylla reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia confertifolia replace: Corymbia confertiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia curtipes - byrnesii replace: Corymbia sp. [Corymbia curtipes - byrnesii; Schulze_214] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Corymbia curtipes - byrnesii intergrade replace: Corymbia sp. [Corymbia curtipes - byrnesii intergrade; Schulze_214] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus new replace: Eucalyptus sp. [Eucalyptus new; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1588,7 +1588,7 @@ taxonomic_updates: - find: Eucalyptus phoenicia replace: Eucalyptus phoenicea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysiphyllum 2, small replace: Bauhinia sp. [Lysiphyllum 2, small; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -1598,19 +1598,19 @@ taxonomic_updates: replace: Lysiphyllum cunninghamii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: NA Bauhinia? replace: Bauhinia sp. [NA Bauhinia?; Schulze_2014] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: NA pea plant - replace: Fabaceae sp. [NA pea plant; Schulze_2014] +- find: NA Pea plant + replace: Fabaceae sp. [NA Pea plant; Schulze_2014] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: family -- find: NA Pea plant - replace: Fabaceae sp. [NA Pea plant; Schulze_2014] +- find: NA pea plant + replace: Fabaceae sp. [NA pea plant; Schulze_2014] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: family @@ -1648,7 +1648,7 @@ taxonomic_updates: replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vachellia (Acacia) pachyphloia subsp. brevipinnula replace: Vachellia sp. [Vachellia (Acacia) pachyphloia subsp. brevipinnula; Schulze_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/Scott_2010/metadata.yml b/data/Scott_2010/metadata.yml index 5d79c3d83..8927e0d4a 100644 --- a/data/Scott_2010/metadata.yml +++ b/data/Scott_2010/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Terrick Terrick National Park") + custom_R_code: data %>% mutate(site_name = "Terrick Terrick National Park") collection_date: 2010/2010 taxon_name: Scientific Name location_name: site_name @@ -62,13 +62,13 @@ traits: methods: unknown substitutions: .na taxonomic_updates: -- find: Spergularia sp. - replace: Spergularia sp. [Scott_2010] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Ericochlamys behrii replace: Eriochlamys behrii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Spergularia sp. + replace: Spergularia sp. [Scott_2010] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus exclude_observations: .na questions: .na diff --git a/data/Searson_2004/metadata.yml b/data/Searson_2004/metadata.yml index 1caa3e3a4..cda44d7ea 100644 --- a/data/Searson_2004/metadata.yml +++ b/data/Searson_2004/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Hawkesbury campus", diff --git a/data/Simpson_2021/metadata.yml b/data/Simpson_2021/metadata.yml index e5298ba94..3ff44cffb 100644 --- a/data/Simpson_2021/metadata.yml +++ b/data/Simpson_2021/metadata.yml @@ -198,7 +198,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( source_id = str_replace_all(`Citation code`, "(?<=[:alpha:]) ", "_"), @@ -364,54 +364,54 @@ taxonomic_updates: - find: Cenchrus setigerus replace: Cenchrus setiger reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria coenicola replace: Digitaria divaricatissima var. divaricatissima reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehrharta juncea replace: Tetrarrhena juncea reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehrharta stipoides replace: Microlaena stipoides reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehrharta stipoides replace: Microlaena stipoides reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriachne armiti replace: Eriachne armitii reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eulalia contorta replace: Pseudopogonatherum contortum reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eulalia irritans replace: Pseudopogonatherum irritans reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Heteropholis formosa + replace: Heteropholis sp. [Heteropholis formosa; Simpson_2021] + reason: Manual change to align to APC-accepted genus. (E. Wenk 2023-05-04) + taxonomic_resolution: genus - find: Phragmites vallatorius replace: Phragmites karka reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa saxicola replace: Saxipoa saxicola reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sporobolus carolii replace: Sporobolus caroli reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stipa aquarii replace: Austrostipa aquarii reason: Manual change to align to correct APC name. (E. Wenk 2023-05-04) - taxonomic_resolution: Species -- find: Heteropholis formosa - replace: Heteropholis sp. [Heteropholis formosa; Simpson_2021] - reason: Manual change to align to APC-accepted genus. (E. Wenk 2023-05-04) - taxonomic_resolution: Genus + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/SinghRamesh_2023/metadata.yml b/data/SinghRamesh_2023/metadata.yml index 0d2c70264..b8aa495ad 100644 --- a/data/SinghRamesh_2023/metadata.yml +++ b/data/SinghRamesh_2023/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Environmental Research Complex, JCU, Cairns", @@ -56,29 +56,29 @@ dataset: low in organic matter and supplemented with perlite and washed river sand to improve drainage (Supplementary Table 2). The two soil mixtures, nutrient-rich and nutrient-poor, had similar d15N at the start of the experiment, based on measurements of subsamples; - these values were 5.4 and 5.3 parts-per-thousand, respectively. ^p The experimental pots were - transferred into a climate-controlled glasshouse facility. The facility is divided - into three temperaturecontrolled chambers, each with a shade screen (SOLARO, Ludvig - Svensson Inc. Kinna, Sweden) that reduces incident irradiance to approximately - 50% of the incoming irradiance. Further details of the experimental facility can - be found in Forbes et al. (2020). Three growth temperature treatments were implemented - by setting chambers to track the external temperature profile with a chamberspecific - offset, specifically a) 0ºC offset, b) -7ºC offset, and c) + 5ºC offset. These - chamber temperature conditions mimic the lowland provenance, mountaintop provenance, - and a lowland warming scenario, respectively. The climatic conditions were controlled - via the Building Management System (BMS) with temperature and relative humidity - (RH) in each chamber measured (QFM2160 Temperature and Humidity Probe, Siemens) - and recorded at 5 min intervals in the BMS. We further characterized the temperature - regimes with a Temperature Soil Moisture Sensor [TMS-4, TOMST s.r.o, Prague, (Wild - et al., 2019)] in each experimental chamber to record the temperature in the immediate - environment of the saplings. A summary of chamber conditions over the course of - the experiment is given in Table 1. We calculated the VPD of each chamber from - the temperature and relative humidity measurements (Campbell and Norman, 1998). - ^p A minimum of three healthy saplings per soil treatment per species were monitored - for growth in each chamber to give a total of 24 saplings (3 Saplings x 2 Soil - treatments x 4 Species) per chamber. All pots were hand-watered to field capacity - daily throughout the experiment. To avoid any chamber bias across the experimental - treatments, the treatments were rotated among the chambers monthly. + these values were 5.4 and 5.3 parts-per-thousand, respectively. ^p The experimental + pots were transferred into a climate-controlled glasshouse facility. The facility + is divided into three temperaturecontrolled chambers, each with a shade screen + (SOLARO, Ludvig Svensson Inc. Kinna, Sweden) that reduces incident irradiance + to approximately 50% of the incoming irradiance. Further details of the experimental + facility can be found in Forbes et al. (2020). Three growth temperature treatments + were implemented by setting chambers to track the external temperature profile + with a chamberspecific offset, specifically a) 0ºC offset, b) -7ºC offset, and + c) + 5ºC offset. These chamber temperature conditions mimic the lowland provenance, + mountaintop provenance, and a lowland warming scenario, respectively. The climatic + conditions were controlled via the Building Management System (BMS) with temperature + and relative humidity (RH) in each chamber measured (QFM2160 Temperature and Humidity + Probe, Siemens) and recorded at 5 min intervals in the BMS. We further characterized + the temperature regimes with a Temperature Soil Moisture Sensor [TMS-4, TOMST + s.r.o, Prague, (Wild et al., 2019)] in each experimental chamber to record the + temperature in the immediate environment of the saplings. A summary of chamber + conditions over the course of the experiment is given in Table 1. We calculated + the VPD of each chamber from the temperature and relative humidity measurements + (Campbell and Norman, 1998). ^p A minimum of three healthy saplings per soil treatment + per species were monitored for growth in each chamber to give a total of 24 saplings + (3 Saplings x 2 Soil treatments x 4 Species) per chamber. All pots were hand-watered + to field capacity daily throughout the experiment. To avoid any chamber bias across + the experimental treatments, the treatments were rotated among the chambers monthly. original_file: SinghRamesh_etal2023_Biomass_Nutrients_RGR_calculations.csv in raw data folder notes: The leaf P content values are very high in this study, but the values have diff --git a/data/Sjostrom_2006/metadata.yml b/data/Sjostrom_2006/metadata.yml index b07159321..5ebe32b3c 100644 --- a/data/Sjostrom_2006/metadata.yml +++ b/data/Sjostrom_2006/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( clonal_spread_mechanism = NA, @@ -488,56 +488,56 @@ taxonomic_updates: - find: Acacia sp. Blackall (D.Orr D01) replace: Acacia sp. Blackall (D.Orr DO1) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Castletower (N.Gibson TO1345) replace: Acacia sp. Castletower (N.Gibson TOI345) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Dandaragan (S. van Leeuwen 269) replace: Acacia sp. Dandaragan (S.van Leeuwen 269) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ronlow Park (E.J.Thompson+61) replace: Acacia sp. Ronlow Park (E.J.Thompson+ 61) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia spirorbis ssp. solandri replace: Acacia spirorbis subsp. solandri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia terminalis subsp. terminalis replace: Acacia terminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia terminalis subsp. terminalis MS replace: Acacia terminalis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena hemilampra ssp. hemilampra replace: Acmena hemilampra subsp. hemilampra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acmena hemilampra ssp. orophila replace: Acmena hemilampra subsp. orophila reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acmena sp. (Cooper Creek G S 1419) replace: Acmena sp. (Cooper Creek GS 1419) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia sp. (Batavia Downs J R C 8511) replace: Acronychia sp. (Batavia Downs JRC 8511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos cunninghamii replace: Adenanthos x cunninghamii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agapetes sp replace: Agapetes sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -547,74 +547,74 @@ taxonomic_updates: replace: Aidia sp. (Gap Creek L.W.Jessup 651) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aidia sp. (Gap Creek LWJ 651) replace: Aidia sp. (Gap Creek L.W.Jessup 651) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ailanthus integrifolia ssp. integrifolia replace: Ailanthus integrifolia subsp. integrifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alangium sp. (Claudie River B H 2682 RFK) replace: Alangium sp. (Claudie River BH 2682RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alangium villosum ssp. polyosmoides replace: Alangium villosum subsp. polyosmoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alangium villosum ssp. tomentosum replace: Alangium villosum subsp. tomentosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Albizia sp. (Sir Charles Hardy Is BH 25849 RFK) replace: Albizia sp. (Sir Charles Hardy Is BH 25849RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia sp. (Windsor Tableland B G 2181) replace: Albizia sp. Windsor Tableland (B.Gray 2181) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon coriaceous replace: Alectryon coriaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina sp. Shaw Island (G.N.Batianoff et al. 3360) replace: Allocasuarina sp. Shaw Island (G.N.Batianoff+ 3360) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia sp. (Forty Mile Scrub BH 25763 RFK) replace: Alphitonia sp. (Forty Mile Scrub BH 25763RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia sp. (Kimberley BH 25117 RFK) replace: Alphitonia sp. (Kimberley BH 25117RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia spectabilis ssp. ophioxyloides replace: Alstonia spectabilis subsp. ophioxyloides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alstonia spectabilis ssp. spectabilis replace: Alstonia spectabilis subsp. spectabilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Alyogyne sp. Hyden (G.S.Durrell GD127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amperea xiphoclada var. pedicillata replace: Amperea xiphoclada var. pedicellata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ancana sp replace: Meiogyne sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -623,7 +623,7 @@ taxonomic_updates: - find: Aneilema sp. Tower LA (P.I.Forster +PIF14846) replace: Aneilema sp. Tower LA (P.I.Forster+ PIF14846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Angasomyrtus sp replace: Kunzea sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -633,64 +633,64 @@ taxonomic_updates: replace: Antirhea putaminosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antirhea sp. (Mt Lewis B G 5733) replace: Antirhea sp. Mt Misery (L.W.Jessup+ GJD3136) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aponogeton bullusus replace: Aponogeton bullosus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aponogeton hexapetalus replace: Aponogeton hexatepalus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argentipallium spiceri replace: Argentipallium x spiceri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyreia soutteri replace: Argyreia soutteri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron actinophyllum ssp. diversifolium replace: Argyrodendron actinophyllum subsp. diversifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Argyrodendron sp. (Boonjee BH 2139 RFK) replace: Argyrodendron sp. (Boonjee BH 2139RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. (Penta Tulip Oak BH 2565 RFK) replace: Argyrodendron sp. (Penta Tulip Oak BH 2565RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. (Whyanbeel BH 1106 RFK) replace: Argyrodendron sp. (Whyanbeel BH 1106RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Kin Kin (W.D.Francis AQ 81198) replace: Argyrodendron sp. Kin Kin (W.D.Francis AQ81198) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Mt Haig ( L.S.Smith+ 14307) replace: Argyrodendron sp. Mt Haig (L.S.Smith+ 14307) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK 1106) replace: Argyrodendron sp. Whyanbeel (B.P.Hyland RFK1106) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Artabotrys sp. Claudie River replace: Artabotrys sp. (Claudie River B.Gray 3240) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartia sp replace: Astartea sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -700,12 +700,12 @@ taxonomic_updates: replace: Atractocarpus fitzalanii subsp. fitzalanii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atractocarpus fitzalanii ssp. tenuipes replace: Atractocarpus fitzalanii subsp. tenuipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrobuxus. sp replace: Austrobuxus sp. [Sjostrom_2006] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -719,47 +719,47 @@ taxonomic_updates: - find: Austromyrtus sp. (Annan River B H 25539 RFK) replace: Austromyrtus sp. (Annan River BH 25539RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Bamaga B H 10235) replace: Austromyrtus sp. (Bamaga BH 10235) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Byerstown Range G P G 2037) replace: Austromyrtus sp. (Byerstown Range GPG 2037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Cape Flattery L J W 13537) replace: Austromyrtus sp. (Cape Flattery LJW 13537) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Danbulla L S S 10123) replace: Austromyrtus sp. (Danbulla LSS 10123) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Forty Mile Scrub G C S 1785) replace: Austromyrtus sp. (Forty Mile Scrub GCS 1785) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Gillies B G 1484) replace: Austromyrtus sp. (Gillies BG 1484) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Leo Creek B G 5244) replace: Austromyrtus sp. (Leo Creek BG 5244) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Mc Ilwraith Range B H 11148) replace: Austromyrtus sp. (McIlwraith Range BH 11148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Mt Lewis B G 831) replace: Austromyrtus sp. (Mt Lewis BG 831) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus sp. (Windsor Tableland B G 412) replace: Austromyrtus sp. (Windsor Tableland BG 412) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bacularia sp replace: Linospadix sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -768,58 +768,58 @@ taxonomic_updates: - find: Baeckea sp. Esperance (A.R.Gunness AG2435) replace: Baeckea sp. Esperance (A.G.Gunness AG 2435) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena & Aurora Range (G.J.Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Payne's Find (S.Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A.Gardner s.n., 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Tampia Hill (R.Coveny 8319 & B.Habberley) replace: Baeckea sp. Tampia Hill (J.C.Anway 327) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wildflower Show (?A.M.Coates S4407) replace: Baeckea sp. Wildflower Show (?A.M.Coates S 4407) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yorkrakine (C.A.Gardner s.n. 9/1933) replace: Baeckea sp. Yorkrakine (C.A.Gardner s.n. 09/1933) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baloskion tenuicele replace: Baloskion tenuiculme reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Barringtonia acutangula ssp. acutangula replace: Barringtonia acutangula subsp. acutangula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bertya sp. Beeron Holding (P. I. Forster 5753) replace: Bertya sp. (Beeron Holding P.I.Forster PIF5753) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera fraserii replace: Billardiera fraseri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera macranthra replace: Billardiera macrantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boea kinneari replace: Boea kinnearii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borreria sp replace: Spermacoce sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -834,7 +834,7 @@ taxonomic_updates: replace: Brachychiton diversifolius subsp. diversifolius reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Brachyglottis sp replace: Brachyglottis sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -844,7 +844,7 @@ taxonomic_updates: replace: Brackenridgea nitida subsp. australiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bracteantha sp replace: Xerochrysum sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -853,26 +853,26 @@ taxonomic_updates: - find: Breynia sp. (Black Mountain B H 25658 RFK) replace: Breynia sp. (Black Mountain BH 25658RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Goldfields (K.F.Kenneally 5452) replace: Brunonia sp. Goldfields Goldfields (K.R. Newbey 6044) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bubbia queenslandiana ssp. australis replace: Bubbia queenslandiana subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Bubbia queenslandiana ssp. queenslandiana replace: Bubbia queenslandiana subsp. queenslandiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Burmannia sp. Melville Island (R. Fensham 1021) replace: Burmannia sp. Melville Island (R.Fensham 1021) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caelospermum sp replace: Coelospermum sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -891,7 +891,7 @@ taxonomic_updates: - find: Callistemon sp. Rainbow Falls (P.I.Forster PIF 13786) replace: Callistemon sp. (Rainbow Falls P.I.Forster PIF13786) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophanoides sp replace: Harnieria sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -915,48 +915,48 @@ taxonomic_updates: - find: Canthium sp. (Friday Island L J B 18158) replace: Canthium sp. (Friday Island LJB 18158) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium sp. (Herberton Range S F K 1377) replace: Canthium sp. (Herberton Range SFK 1377) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium sp. (Kimberley B H 25133 RFK) replace: Canthium sp. (Kimberley BH 25133RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium sp. (Whitfield Range B H 1020 RFK) replace: Canthium sp. (Whitfield Range) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canthium. sp replace: Canthium sp. [Sjostrom_2006] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Capparis sp. (Forty Mile Scrub BH 3883 RFK) replace: Capparis sp. (Forty Mile Scrub BH 3883RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis sp. Iron Range replace: Capparis sp. (Iron Range) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casearia sp. (Mission Beach B H 773 RFK) replace: Casearia sp. (Mission Beach B.P.Hyland 773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casearia sp. (Mission Beach BH 773RFK) replace: Casearia sp. (Mission Beach B.P.Hyland 773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cathormion umbellatum ssp. moniliforme replace: Cathormion umbellatum subsp. moniliforme reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centuarium sp replace: Centaurium sp. [Sjostrom_2006] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -970,25 +970,25 @@ taxonomic_updates: - find: Ceratopetalum sp. (Mt Hemmant B H 3338 RFK) replace: Ceratopetalum sp. (Mt Hemmant BH 3338RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratopetalum sp. (Mt Spurgeon B H 1501 RFK) replace: Ceratopetalum sp. Mt Spurgeon (B.Hyland RFK1501) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium sp. Gingin (N. G. Marchant s.n. 4/11/1988) replace: Chamelaucium sp. Gingin (N.G.Marchant s.n. 4/11/1988) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheiranthera sp (boralis, Granite Belt) replace: Cheiranthera borealis reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC accepted` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheiranthera sp. (New England, Ian Telford) replace: Cheiranthera telfordii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chionogentias sp replace: Gentianella sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1012,25 +1012,25 @@ taxonomic_updates: - find: Chrysophyllum sp. Mt Lewis replace: Chrysophyllum sp. (Mt Lewis) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citrus microcarpa replace: Citrus x microcarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cliffordiochloa parvispicula replace: Cliffordiochloa parvispiculata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cochlospermum gillivraei ssp. gillivraei replace: Cochlospermum gillivraei subsp. gillivraei reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Codiaeum variagatum replace: Codiaeum variegatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coleus sp replace: Plectranthus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1040,54 +1040,54 @@ taxonomic_updates: replace: Commelina sp. Lakefield NP (P.I.Forster+ PIF12943) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. (Klondike B H 25863 RFK) replace: Commersonia sp. (Klondike BH 25863RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas sp. Finniss (R. Bates 28794) replace: Corybas sp. Finniss (R.Bates 28794) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia sp. Yalgorup (G.J.Keighery 14449) replace: Craspedia sp. Yalgorup National Park (G.J.Keighery 14449) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. (Barkley Downs S. L. Everist 3379) replace: Croton sp. (Barkly Downs S.L.Everist 3379) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. (Mt Mulligan H. Flecker NQN C6457) replace: Croton sp. (Mt Mulligan H.Flecker NQNC6457) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. (Myall Creek P. I. Forster F14368) replace: Croton sp. (Myall Creek P.I.Forster PIF14368) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. (Possum Scrub PIF 14376) replace: Croton sp. (Possum Scrub P.I.Forster PIF14376) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. (Watson River J. R. Clarkson 4061B) replace: Croton sp. (Watson River J.R.Clarkson 4061B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton sp. Possum scrub replace: Croton sp. (Possum Scrub P.I.Forster PIF14376) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton stockerii replace: Croton stockeri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crudia sp. (Archer River BH 3078 RFK) replace: Crudia sp. (Archer River BH 3078RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crypsis sp replace: Sporobolus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1096,19 +1096,19 @@ taxonomic_updates: - find: Cryptocarya endiaridrifolia replace: Cryptocarya endiandrifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya hypospadia replace: Cryptocarya hypospodia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya sp. (Boonjee B H 25794 RFK) replace: Cryptocarya sp. (Boonjee BH 25794RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya sp. (Gadgarra B H 25231 RFK) replace: Cryptocarya sp. (Gadgarra BH 25231RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptolepis sp replace: Cryptolepis sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1117,41 +1117,41 @@ taxonomic_updates: - find: Cyathostemma sp A replace: Cyathostemma sp. A reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bowmannii replace: Cyperus bowmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daphnandra sp. Illawarra (R. Schodde 3475) replace: Daphnandra sp. Illawarra (R.Schodde 3475) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Carnamah (J. Coleby- Williams 148) replace: Darwinia sp. Carnamah (J.Coleby-Williams 148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson (G. J. Keighery 12717) replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Decaspermum sp. Mt Morgan (D. Hoy 71) replace: Decaspermum sp. Mt Morgan (D.Hoy 71) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Denhamia pittosporoides ssp. angustifolia replace: Denhamia pittosporoides subsp. angustifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Denhamia pittosporoides ssp. pittosporoides replace: Denhamia pittosporoides subsp. pittosporoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Derwentia sp replace: Veronica sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1160,7 +1160,7 @@ taxonomic_updates: - find: Desmos sp. Mossman River replace: Desmos sp. (Mossman River) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Desmos. sp replace: Desmos sp. [Sjostrom_2006] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -1174,55 +1174,55 @@ taxonomic_updates: - find: Dicrastylis sp. Ilkurlka (R.Davis et al. 11637) replace: Dicrastylis sp. Ilkurlka (R.Davis et al. RD 11637) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dimocarpus leichhardtii replace: Dimocarpus leichhardtii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Baird L A B H 9374) replace: Diospyros sp. (Baird LA BH 9374) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Mt Lewis L S S 10107) replace: Diospyros sp. (Mt Lewis L.S.Smith 10107) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Mt Lewis LSS 10107) replace: Diospyros sp. (Mt Lewis L.S.Smith 10107) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Mt Spurgeon C T W 10677) replace: Diospyros sp. (Mt Spurgeon CTW 10677) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Mt White P I F 14415) replace: Diospyros sp. (Mt White P.I.Forster PIF14415) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Mt White PIF 14415) replace: Diospyros sp. (Mt White P.I.Forster PIF14415) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Swipers LA BH 1984RFK) replace: Diospyros sp. (Swipers LA B.Hyland 1984RFK) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diospyros sp. (Swipers LABH 1984 RFK) replace: Diospyros sp. (Swipers LA B.Hyland 1984RFK) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplocaulobium masonii replace: Diplocaulobium masonii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplospora sp replace: Diplospora sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1237,20 +1237,20 @@ taxonomic_updates: replace: Diuris x polymorpha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera dilatato-petiolaris replace: Drosera dilatatopetiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryadodaphne sp. (Mt Lewis BH 1496 RFK) replace: Dryadodaphne sp. 'Mt Lewis' (B.P.Hyland+ RFK1496) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryandra sp replace: Banksia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1265,11 +1265,11 @@ taxonomic_updates: replace: Dysoxylum mollissimum subsp. molle reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dysoxylum sp. (Gosschalk L A B G 786) replace: Dysoxylum sp. (Gosschalk LA BG 786) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ebermaiera sp replace: Staurogyne sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1284,38 +1284,38 @@ taxonomic_updates: replace: Elaeocarpus largiflorens subsp. largiflorens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Elaeocarpus largiflorens ssp. retinervis replace: Elaeocarpus largiflorens subsp. retinervis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Elaeocarpus sp. (Mossman Bluff DF 1666) replace: Elaeocarpus sp. (Mossman Bluff D.G.Fell DF1666) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp. (Mossman Bluff DF1666) replace: Elaeocarpus sp. (Mossman Bluff D.G.Fell DF1666) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp. (Mt Spurgeon BH 2907 RFK) replace: Elaeocarpus sp. (Mt Spurgeon BH 2907RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp. Mt Misery (L.J.Webb+ 10905) replace: Elaeocarpus sp. (Mt Misery L.J.Webb+ 10905) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp. Rocky Creek (G. Read AQ 562114) replace: Elaeocarpus sp. Rocky Creek (G.Read AQ 562114) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp. Windsor Tableland (L.W.Jessup & GJM 1378) replace: Elaeocarpus sp. Windsor Tableland (L.W.Jessup+ GJM1378) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elyonurus sp replace: Elionurus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1324,32 +1324,32 @@ taxonomic_updates: - find: Empodisma gracillum replace: Empodisma gracillimum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra monothyra ssp. monothyra replace: Endiandra monothyra subsp. monothyra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Endiandra monothyra ssp. trichophylla replace: Endiandra monothyra subsp. trichophylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Epacris sp. aff. virgata 'graniticola' replace: Epacris aff. virgata 'graniticola' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris virgata Beaconsfield' replace: Epacris virgata (Beaconsfield) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epiblema grandiflorum var. cyanea K. Dixon ms. replace: Epiblema grandiflorum var. cyanea reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eremocitrus sp replace: Citrus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1359,50 +1359,50 @@ taxonomic_updates: replace: Eremophila denticulata subsp. trisulcata reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eriosema chinensis replace: Eriosema chinense reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erodium sp. Blesing (F.R.Wheeler 471) replace: Erodium sp. Blesing (J.R.Wheeler 471) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina sp. (Croftby P. I. Forster+ PI F6209) replace: Erythrina sp. (Croftby P.I.Forster+ PIF6209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythroxylum sp. (Cape York E C 20162) replace: Erythroxylum sp. (Cape York EC 20162) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanites replace: Eucalyptus x balanites reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus bennettiae replace: Eucalyptus x bennettiae reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus phylacis replace: Eucalyptus x phylacis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus rhodantha var. petiolaris replace: Eucalyptus rhodantha var. x petiolaris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sp. Consuelo Tableland (M.I.H.Brooker B4884) replace: Eucalyptus sp. Consuelo Tableland (M.I.Brooker B4884) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Howes Swamp Creek (M. Doherty 19/7/1985 NSW 207054) replace: Eucalyptus sp. Howes Swamp Creek (M.Doherty, 19/7/1985 NSW 207054) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x nepeanensis replace: Eucalyptus x [Eucalyptus x nepeanensis; Sjostrom_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1412,24 +1412,24 @@ taxonomic_updates: replace: Euchiton sp. (Indooroopilly L.Pedley 4421) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton subfalcatum replace: Gnaphalium subfalcatum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia sp. A NSW replace: Euphorbia sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia sp. B Kimberley Flora (B. J. Carter 629) replace: Euphorbia sp. B Kimberley Flora (B.J.Carter 629) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia sp. 'fabula' replace: Euphrasia sp. fabula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eurybiopsis sp replace: Minuria sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1443,22 +1443,22 @@ taxonomic_updates: - find: Ficus opposita var. micrantha replace: Ficus opposita var. micracantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Flacourtia sp. (Shiptons Flat LWJ + GJD 3200) replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flacourtia sp. Shiptons Flat LWJ + GJD 3200) replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia sp. (Claudie River L J B 19658) replace: Garcinia sp. Claudie River (L.J.Brass 19658) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastonia sp replace: Polyscias sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1467,45 +1467,45 @@ taxonomic_updates: - find: Geleznowia sp. Binnu (K.A.Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonata replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonota replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine lactovirens replace: Glycine lactivirens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium sp. Hughenden replace: Gnaphalium sp. (Hughenden C.E.Hubbard+ 7639) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium gairdnerium replace: Gompholobium gairdnerianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Dave's Creek (P.I.Forster+ PIF5979) replace: Gompholobium sp. Dave's Creek (P.I.Forster+ PIF15979) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Point Archer J.Wrigley+ NQ1301) replace: Gompholobium sp. Point Archer (J.Wrigley+ NQ1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus sp. Thornton Peak (L.J.Brass et al. 249) replace: Gonocarpus sp. (Thornton Peak L.J.Brass+ 249) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia australus replace: Grewia australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gronophyllum sp replace: Hydriastele sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1514,7 +1514,7 @@ taxonomic_updates: - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gulubia sp replace: Hydriastele sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1523,7 +1523,7 @@ taxonomic_updates: - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia sp replace: Tecticornia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1532,17 +1532,17 @@ taxonomic_updates: - find: Haplostichanthus sp. (Johnstone River L W J 471) replace: Haplostichanthus sp. (Johnstone River LWJ 471) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus sp. Rocky River replace: Haplostichanthus sp. (Rocky River Scrub P.I.Forster+ PIF10617) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus topaz replace: Haplostichanthus sp. (Topaz LWJ 520) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haplostichanthus. sp replace: Haplostichanthus sp. [Sjostrom_2006] reason: match_01_fuzzy. Fuzzy match of name ending with `sp.` to an APC accepted @@ -1552,45 +1552,45 @@ taxonomic_updates: replace: Hedraianthera sp. (Mossman V.K.Moriarty 2557) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedraianthera sp. (Mossman VKM 2557) replace: Hedraianthera sp. (Mossman V.K.Moriarty 2557) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra sp. Watheroo (S. Hancocks 4) replace: Hemiandra sp. Watheroo (S.Hancocks 4) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia clotteniana Bailey replace: Hemigenia clotteniana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia dulca replace: Hemigenia dulcis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Crooked Creek (E.J.Thompson+ CHA 228) replace: Hemigenia sp. Crooked Creek (E.J.Thompson+ CHA228) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Three Springs (S.Patrick 4043A) replace: Hemigenia sp. Three Springs (S.Patrick 4043 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hernandia alibiflora replace: Hernandia albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus geranoides replace: Hibiscus geranioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hollandaea sp. (Pinnacle Rock Track P I F 10714) replace: Hollandaea sp. (Pinnacle Rock Track PIF 10714) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydatella sp replace: Trithuria sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1615,16 +1615,16 @@ taxonomic_updates: replace: Ilex arnhemensis subsp. arnhemensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ilex arnhemensis ssp. ferdinandi replace: Ilex arnhemensis subsp. ferdinandi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ilex sp. (Gadgarra BH 2011 RFK) replace: Ilex sp. (Gadgarra BH 2011RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ilysanthes sp replace: Lindernia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1633,66 +1633,66 @@ taxonomic_updates: - find: Indigofera mackinlayi replace: Indigofera mckinlayi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera obovata replace: Indigofera obovata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (A83977 Areyonga) replace: Indigofera A83977 Areyonga reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (A86365 Mac Donnell Ranges) replace: Indigofera A86365 Macdonnell Ranges reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (Aramac E. J. Thompson+ J E R177) replace: Indigofera sp. (Aramac E.J.Thompson+ JER177) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (D146784 Marrawal) replace: Indigofera sp. Marrawal (C.R.Michell 2906) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (St Anns Homestead E. J. Thompson+ BU C500) replace: Indigofera sp. (St Anns Homestead E.J.Thompson+ BUC500) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (Walsh River J. R. Clarkson 3020) replace: Indigofera sp. (Walsh River J.R.Clarkson 3020) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. (Yuendumu N. M. Henry 333) replace: Indigofera sp. (Yuendumu N.M.Henry 333) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. A Kimberley Flora (G. J. Keighery & N. Gibson 70) replace: Indigofera sp. A Kimberley Flora (G.J.Keighery & N.Gibson 70) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Warburton (A. A. Munir 5209) replace: Indigofera sp. Warburton (A.A.Munir 5209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixora sp. (North Mary LABH 8618) replace: Ixora sp. (North Mary LA B.H. 8618) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacksonia sp. Collie (C. J. Koch 177) replace: Jacksonia sp. Collie (C.J.Koch 177) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jagera javanica ssp. australiana replace: Jagera javanica subsp. australiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Jagera pseudorhus var. pseudorhus forma pilosiuscula replace: Jagera pseudorhus f. pilosiuscula reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Kailarsenia sp replace: Kailarsenia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1712,15 +1712,15 @@ taxonomic_updates: replace: Lagenophora sp. (Forty Mile Scrub R.J.Fensham 1113) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A.Griffiths 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E.Reid 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lavatera sp replace: Lavatera sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1739,29 +1739,29 @@ taxonomic_updates: - find: Leptosema cervicorne replace: Leptosema cervicornu reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon malayanus ssp. novoguineensis replace: Leucopogon malayanus subsp. novoguineensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucopogon sp. Coolmunda (D. Halford Q 1635) replace: Leucopogon sp. Coolmunda (D.Halford Q1635) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lamington (G.Leiper AQ 633386) replace: Leucopogon sp. Lamington (G.Leiper AQ633386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lindera queenslandica B. Hyland replace: Lindera queenslandica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Linociera sp. (Little Pine LABH 2520 RFK) replace: Linociera sp. (Little Pine LA BH 2520RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Longetia sp replace: Austrobuxus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1771,26 +1771,26 @@ taxonomic_updates: replace: Lophostemon grandiflorus subsp. riparius reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lysiphyllum sp replace: Bauhinia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus -- find: Macrostelia grandifolia ssp. grandifolia - replace: Macrostelia grandifolia subsp. grandifolia - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Subspecies - find: Macrostelia grandifolia ssp. Macilwraithensis replace: Macrostelia grandifolia subsp. macilwraithensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Macrostelia grandifolia ssp. grandifolia + replace: Macrostelia grandifolia subsp. grandifolia + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: subspecies - find: Macrostelia sp. Bolthead B G6853 replace: Macrostelia sp. (Bolt Head BG 6853) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maidenia sp replace: Trachymene sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1809,96 +1809,96 @@ taxonomic_updates: - find: Mallotus megadon replace: Mallotus megadontus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus (Dryandra, (D. M. Rose 397)) replace: Marianthus dryandra reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus bignoniacea replace: Marianthus bignoniaceus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus coeruleo-punctatus replace: Marianthus coeruleopunctatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus granulata replace: Marianthus granulatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp (sylvaticus, Walpole) replace: Marianthus sylvaticus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. (Windsor Tableland B H 3416 RFK) replace: Maytenus sp. (Windsor Tableland BH 3416RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. Mt Coolon (D.Corr PA 409) replace: Maytenus sp. Mt Coolon (D.Corr PA409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma sp. (Pieter Botte B H 3503 RFK) replace: Medicosma sp. (Pieter Botte BH 3503RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meiogyne sp. Henrietta Creek replace: Meiogyne sp. (Henrietta Creek) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca borialis replace: Melaleuca borealis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melichrus hirsutus MS replace: Melichrus hirsutus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melichrus sp. Gibberagee (A. S. Benwelll & J. B. Williams 97239) replace: Melichrus sp. Gibberagee (A.S.Benwell & J.B.Williams 97239) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicope sp. (Shipton flats) replace: Melicope sp. (Shiptons Flat) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus novae-zelandiae centurionis replace: Melicytus novae-zelandiae subsp. centurionis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melicytus ramiflorus oblongifolius replace: Melicytus ramiflorus subsp. oblongifolius reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melodorum leichardtii replace: Melodorum leichhardtii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum sp. Claudia River replace: Melodorum sp. (Claudie River) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum sp. Font Hills replace: Melodorum sp. (Font Hills) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum sp. Stone Crossing replace: Melodorum sp. (Stone Crossing) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodorum sp. topaz replace: Melodorum sp. (Topaz) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua lamachiana replace: Mesua larnachiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meziella sp replace: Myriophyllum sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1912,25 +1912,25 @@ taxonomic_updates: - find: Mirbelia sp. Bursarioides (T..Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mischocarpus pyriformis ssp. pyriformis replace: Mischocarpus pyriformis subsp. pyriformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mischocarpus pyriformis ssp. retusus replace: Mischocarpus pyriformis subsp. retusus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Mitrephora zippelliana replace: Mitrephora zippeliana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monimiaceae Gen. Nov. sp. (Mc Dowell Range JGT 14552) replace: Wilkiea sp. McDowall Range (J.G.Tracey 14552) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monimiaceae sp. (Mc Ilwraith Range B H 10894) replace: Monimiaceae sp. [Monimiaceae sp. (Mc Ilwraith Range B H 10894); Sjostrom_2006] reason: match_21. Rewording name to be recognised as family rank, with family accepted @@ -1955,11 +1955,11 @@ taxonomic_updates: replace: Mukia sp. (Longreach D.Davidson AQ279935) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrtaceae Gen. Nov. sp. (Boonjee B H 6589) replace: Myrtaceae Gen. Nov. sp. (Boonjee BH 6589) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myrtella sp replace: Myrtella sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1968,7 +1968,7 @@ taxonomic_updates: - find: Najas tenufolia replace: Najas tenuifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nesaea sp replace: Ammannia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1982,27 +1982,27 @@ taxonomic_updates: - find: Olearia brachyglossa replace: Olearia brachyglossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. (Carnarvon N P W. Morley A Q249966) replace: Olearia sp. Carnarvon NP (W.Morley AQ249966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. (Glenavon P. I. Forster+ P I F15039) replace: Olearia sp. (Glenavon P.I.Forster+ PIF15039) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Bremer Bay (R. Davis 10528) replace: Olearia sp. Bremer Bay (R.Davis 10528) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Carnarvon NP (W.Morley, AQ249966) replace: Olearia sp. Carnarvon NP (W.Morley AQ249966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Omalanthus sp replace: Homalanthus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2011,7 +2011,7 @@ taxonomic_updates: - find: Orites sp. (Pinnacle Rock Track W W C 867) replace: Orites sp. (Pinnacle Rock Track WWC 867) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Orthocarpus sp replace: Orthocarpus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2020,7 +2020,7 @@ taxonomic_updates: - find: Ottelia ovafolio replace: Ottelia ovalifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pachycornia sp replace: Tecticornia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2064,7 +2064,7 @@ taxonomic_updates: - find: Philotheca falcatus replace: Philotheca falcata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phreatia sp replace: Phreatia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2073,57 +2073,57 @@ taxonomic_updates: - find: Phyllanthus dallachyanus subsp. (Irvinebank P.I.Forster 14675) replace: Phyllanthus dallachyanus subsp. Irvinebank (P.I.Forster PIF14675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus sp. (Bridle LA P. I. Forster+ PI F17345) replace: Phyllanthus sp. ( Bridle LA P.I.Forster+ PIF17345) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. (Bulburin P. I. Forster+ PI F16034) replace: Phyllanthus sp. Bulburin (P.I.Forster+ PIF16034) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. (Bulimba Station P. I. Forster PI F8421) replace: Phyllanthus sp. (Bulimba Station P.I.Forster PIF8421) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. (Cardwell A. Thorsborne+ 488) replace: Phyllanthus sp. Cardwell (A.Thorsborne+ 488) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. (Kidston P. I. Forster+ PI F14945) replace: Phyllanthus sp. (Kidston P.I.Forster+ PIF14945) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. Coastal North West (J. Z. Weber 4919) replace: Phyllanthus sp. Coastal North West (J.Z.Weber 4919) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus sp. D Kimberley Flora (C. R. Dunlop 5302) replace: Phyllanthus sp. D Kimberley Flora (C.R.Dunlop 5302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilidiostigma tetramurum replace: Pilidiostigma tetramerum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Bakers Blue Mt. (D.G.Fell DF1588) replace: Pimelea sp. Bakers Blue Mt (D.G.Fell DF1588) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea spinescens subsp. Pubiflora Rye replace: Pimelea spinescens subsp. pubiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Plectranthus sp. 1 (Nundle, S.Horton s.n., 9/04/1994) replace: Plectranthus sp. 1 (Nundle; S.Horton s.n., 9/04/1994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pleuropappus sp replace: Angianthus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2138,42 +2138,42 @@ taxonomic_updates: replace: Polyaulax cylindrocarpa reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyalthia sp. (Wyvuri BH 2632 RFK) replace: Polyalthia sp. (Wyvuri BH 2632RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyaulax sp. (Mt. Lewis LWJ 554) replace: Polyaulax sp. (Mt Lewis LWJ 554) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyaulax sp. Mt Lewis replace: Polyaulax sp. 'Mt Lewis' (L.J.Webb & J.G.Tracey 13731) reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Bellenden Ker BH 2524 RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) replace: Polyosma sp. (Mt Bellenden Ker BH 2524RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Lewis BH 25241 RFK) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. (Mt Lewis BH 25241RFK) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyosma sp. Mt Lewis (B.Hyland RFK25241) replace: Polyosma sp. Mt Lewis (B.P.Hyland RFK25241) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderris x viridis replace: Pomaderris x [Pomaderris x viridis; Sjostrom_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2182,27 +2182,27 @@ taxonomic_updates: - find: Pongamia sp. (Mc Ilwraith B H 3295 RFK) replace: Pongamia sp. (McIlwraith BH 3295RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria pohlmaniana var. pohlmaniana replace: Pouteria pohlmaniana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria sp. (Barong M T 22) replace: Pouteria sp. (Barong M.Tucker 22) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria sp. (Mt Lewis B H 2475 RFK) replace: Pouteria sp. (Mt Lewis B.P.Hyland 579) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pouteria sp. (Mt Lewis BH 2475RFK) replace: Pouteria sp. (Mt Lewis B.P.Hyland 579) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pratia sp replace: Lobelia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2216,21 +2216,21 @@ taxonomic_updates: - find: Pterostylis sp. Botany Bay (A. Bishop J221/1-13) replace: Pterostylis sp. Botany Bay (A.Bishop J221/1-13) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Halbury (R. Bates 8425) replace: Pterostylis sp. Halbury (R.Bates 8425) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Hale (R. Bates 21725) replace: Pterostylis sp. Hale (R.Bates 21725) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Northampton (S. D. Hopper 3349) replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilanthelium sp replace: Schoenus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2239,7 +2239,7 @@ taxonomic_updates: - find: Ptilotus schwarzii replace: Ptilotus schwartzii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea aff. retusa (Mt Kaye) sensu Fl. Victoria replace: Pultenaea sp. [Pultenaea aff. retusa (Mt Kaye) sensu Fl. Victoria; Sjostrom_2006] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -2248,94 +2248,94 @@ taxonomic_updates: - find: Pultenaea hartmanii replace: Pultenaea hartmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. ' Genowlan Point' (Allen s.n., 29 Nov 1997) replace: Pultenaea sp. Genowlan Point (Allen s.n., 29 Nov. 1997) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. ' Olinda' (Coveny 6616) replace: Pultenaea sp. Olinda (R.Coveny 6616) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. (Cracow P. I. Forster P I F7010) replace: Pultenaea sp. (Cracow P.I.Forster PIF7010) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. (Eidsvold D. Halford Q1783) replace: Pultenaea sp. (Eidsvold D.Halford Q1783) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. (Maryborough T. Stanley 87) replace: Pultenaea sp. (Maryborough T.Stanley 87) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. (Narrabri R. G. Coveny+ 8811) replace: Pultenaea sp. (Narrabri R.G.Coveny+ 8811) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. A sensu Weston -1991 replace: Pultenaea sp. A aff. ferruginea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. B sensu Weston -1991 replace: Pultenaea sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. C sensu Weston -1991 replace: Pultenaea sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. D sensu Weston -1991 replace: Pultenaea sp. D reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. F sensu Weston -1991 replace: Pultenaea sp. F reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. G sensu Weston -1991 replace: Pultenaea sp. G reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. H sensu Weston -1991 replace: Pultenaea sp. H reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. I sensu Weston -1991 replace: Pultenaea sp. I reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. J sensu Weston -1991 replace: Pultenaea sp. J reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. K sensu Weston -1991 replace: Pultenaea sp. K reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. (Barong B G 742) replace: Quassia sp. (Barong BG 742) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia sp. Mooney Creek (J. King s.n. 1949) replace: Quassia sp. Mooney Creek (J.King s.n. 1949) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Quassia species A replace: Quassia sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Racosperma sp replace: Acacia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2344,38 +2344,38 @@ taxonomic_updates: - find: Rapanea kimberleyensis replace: Myrsine kimberleyensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea maccomishii replace: Rapanea mccomishii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Emerald JOF 131 replace: Rapanea sp. (Emerald LA A.K.Irvine 21) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Kimberley KFK 10514 replace: Rapanea sp. (Kimberley KFK 10514) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Ravenshoe CAIRNS 5523 replace: Rapanea sp. (Ravenshoe H.Flecker NQNC5524) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Richmond River (J. H. Maiden & J. L. Boorman NSW 26751) replace: Rapanea sp. Richmond River (J.H.Maiden & J.L.Boorman NSW 26751) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Shipton B H 12523 replace: Rapanea sp. (Shipton BH 12523) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rapanea sp. Zarda B H 6898 replace: Rapanea sp. (Zarda LA B.P.Hyland 6898) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rauwenhoffia sp replace: Uvaria sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2384,28 +2384,28 @@ taxonomic_updates: - find: Rhagodia sp. Yeelirrie Station (K.A.Shepherd et al. 1396) replace: Rhagodia sp. Yeelirrie Station (K.A.Shepherd et al. KS 1396) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhipogonum brevifolium replace: Ripogonum brevifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia sp. (Cape York L S S 12538) replace: Rhodamnia sp. (Cape York LSS 12538) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia sp. (Mc Ilwraith Range L J W 9527) replace: Rhodamnia sp. (McIlwraith Range LJW 9527) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodamnia sp. (Silver Plains B H 2866 RFK) replace: Rhodamnia sp. (Silver Plains BH 2866RFK) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodomyrtus trineura ssp. capensis replace: Rhodomyrtus trineura subsp. capensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhynchophreatia sp replace: Rhynchophreatia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2419,7 +2419,7 @@ taxonomic_updates: - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia sp replace: Androcalva sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2429,7 +2429,7 @@ taxonomic_updates: replace: Rulingia sp. (Trigwell Bridge) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rupicola sp replace: Epacris sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2438,19 +2438,19 @@ taxonomic_updates: - find: Ruppia megacearpa replace: Ruppia megacarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma vickeyae replace: Rytidosperma vickeryae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sapindaceae sp. (Noah Creek B G 6026) replace: Sapindaceae sp. (Noah Creek BG 6026) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcopteryx sp. (Mc Ilwraith Range BH 3261 RFK) replace: Sarcopteryx sp. (McIlwraith Range BH 3261RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcostemma sp replace: Cynanchum sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2459,11 +2459,11 @@ taxonomic_updates: - find: Sarcotoechia sp. (Mountain Sarcotoechia WWC 100) replace: Sarcotoechia sp. (Mountain Sarcotoechia WWC100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarga angustum replace: Sarga angusta reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarojusticia sp replace: Harnieria sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2472,19 +2472,19 @@ taxonomic_updates: - find: Sauropus decrescentifolia replace: Sauropus decrescentifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus sp. Central Ranges (D. J. Edinger et al.2420) replace: Sauropus sp. Central Ranges (D.J.Edinger et al. 2420) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus sp. Cockburn Range (D. Dureau 81) replace: Sauropus sp. Cockburn Range (D.Dureau 81) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sauropus sp. Woolgorong (M. Officer s.n.10/8/94) replace: Sauropus sp. Woolgorong (M.Officer s.n. 10/8/94) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schizeilema sp replace: Azorella sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2493,7 +2493,7 @@ taxonomic_updates: - find: Scholtzia sp. Valentine Road (S.J.Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerochlamys sp replace: Sclerochlamys sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2518,7 +2518,7 @@ taxonomic_updates: replace: Seringia x katatona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sinoga sp replace: Asteromyrtus sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2528,15 +2528,15 @@ taxonomic_updates: replace: Sloanea australis subsp. parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Solanum octonum replace: Solanum octona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp. Prince Regent River (T.Handasyde TH 1925) replace: Solanum sp. Prince Regent River (T.HandasydeCH 1925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spartothamnella sp replace: Teucrium sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2545,11 +2545,11 @@ taxonomic_updates: - find: Spermacoce sp. Garraway Creek (P.I.Forster PIF 15461) replace: Spermacoce sp. Garraway Creek (P.I.Forster PIF15461) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Steinchisma laxa replace: Steinchisma laxum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stelligera sp replace: Stelligera sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2564,43 +2564,43 @@ taxonomic_updates: replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stenocarpus sp. Hinchinbrook Is. (F.D.Hocking AQ229860) replace: Stenocarpus sp. Hinchinbrook Is. (F.D.Hockings AQ229860) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium roseo-alatum replace: Stylidium roseoalatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp Dewars Pool (K. F. Kenneally 11400) replace: Stylidium sp. Dewars Pool (K.F.Kenneally 11400) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. (Aurukun C. Dalliston C C429) replace: Stylidium sp. Aurukun (C.Dalliston CC429) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Bindoon (K. F. Kenneally 11405) replace: Stylidium sp. Bindoon (K.F.Kenneally 11405) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Boulder Rock (A. H. Burbidge 2536) replace: Stylidium sp. Boulder Rock (A.H.Burbidge 2536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. King Cascade (K. F. Kenneally 11173) replace: Stylidium sp. King Cascade (K.F.Kenneally 11173) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker (E. J. Croxford 1906) replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplectrodia sp replace: Triodia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2610,64 +2610,64 @@ taxonomic_updates: replace: Symplocos cochinchinensis var. gittonsii reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos cochinchinensis ssp. thwaitesii var. glaberrim replace: Symplocos cochinchinensis var. glaberrima reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos cochinchinensis ssp. thwaitesii var. pilosiusc replace: Symplocos cochinchinensis var. pilosiuscula reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Symplocos sp. (Mt Finnigan L J B 21029) replace: Symplocos sp. (Mt Finnigan LJB 20129) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Symplocos sp. (North Mary B G 2543) replace: Symplocos sp. (North Mary B.Gray 2543) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syncarpia glomulifera ssp. glomulifera replace: Syncarpia glomulifera subsp. glomulifera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Synoum glandulosum ssp. paniculosum replace: Synoum glandulosum subsp. paniculosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium forte ssp. forte replace: Syzygium forte subsp. forte reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium forte ssp. potamophilum replace: Syzygium forte subsp. potamophilum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Syzygium sp. (Bartle Frere B H 12923) replace: Syzygium sp. (Bartle Frere BH 12923) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium sp. (Mt Misery G S 1131) replace: Syzygium sp. (Mt Misery GS 1131) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium wilsonii ssp. cryptophlebium replace: Syzygium wilsonii subsp. cryptophlebium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tasmannia sp. (Mt Bellenden Ker JRC 6571) replace: Tasmannia sp. (Mt Bellenden Ker J.R.Clarkson 6571) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecomaria sp replace: Tecoma sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2676,7 +2676,7 @@ taxonomic_updates: - find: Tecticornia sp. Little Sandy Desert (K.Shepherd & C.Wilkins KS830) replace: Tecticornia sp. Little Sandy Desert (K.A.Shepherd & C.Wilkins KS 830) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tegicornia sp replace: Tecticornia sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2685,41 +2685,41 @@ taxonomic_updates: - find: Tephrosia sp. Miriam Vale (E.J.Thomson+MIR33) replace: Tephrosia sp. Miriam Vale (E.J.Thompson+ MIR33) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Yampi (A.S.Start per R.L.Barrett RLB 2291) replace: Tephrosia sp. Yampi (A.N.Start per R.L.Barrett RLB 2291) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia aridicola ssp. chillagoensis replace: Terminalia aridicola subsp. chillagoensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Terminalia oblongata ssp. volucris replace: Terminalia oblongata subsp. volucris reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Terminalia sp. Howick River (D.G.Fell 3249) replace: Terminalia sp. Howick River (D.G.Fell+ DGF3249) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ternstroemia cherryi (Bailey) Bailey & C. White replace: Ternstroemia cherryi reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetrasynandra sp. (Mt Lewis B H 1053 RFK) replace: Tetrasynandra sp. 'Mt Lewis' (B.P.Hyland 7907) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Ormeau (G.Leiper AQ 476858) replace: Teucrium sp. Ormeau (G.Leiper AQ476858) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thecanthes sp replace: Pimelea sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2733,7 +2733,7 @@ taxonomic_updates: - find: Thelymitra merraniae replace: Thelymitra merranae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra x decora replace: Thelymitra x [Thelymitra x decora; Sjostrom_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2743,16 +2743,16 @@ taxonomic_updates: replace: Thelymitra mackibbinii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thespesia lampus replace: Thespesia lampas reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Green Hill (S. Paust 1322) replace: Thomasia sp. Green Hill (S.Paust 1322) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thonandia sp replace: Rytidosperma sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2776,38 +2776,38 @@ taxonomic_updates: - find: Tribulopis sp. Koolan Island (K. F. Kenneally 8278) replace: Tribulopis sp. Koolan Island (K.F.Kenneally 8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Mitchell Plateau (K. F. Kenneally 7935) replace: Tribulopis sp. Mitchell Plateau (K.F.Kenneally 7935) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Weipa mission replace: Tribulopis sp. (Weipa Mission R.L.Specht+ W296) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. Rabbit flat replace: Tribulus sp. Rabbit Flat (P.K.Latz 4530) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp.long-styled eichlerianus (A. S. George 10666) replace: Tribulus sp. long-styled eichlerianus (A.S.George 10666) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp.saline replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium baracchanum replace: Trichanthodium baracchianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium exile replace: Trichanthodium exilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tripogon sp replace: Tripogonella sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2821,7 +2821,7 @@ taxonomic_updates: - find: Typhonium taylori replace: Typhonium taylorii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uldinia sp replace: Trachymene sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2836,22 +2836,22 @@ taxonomic_updates: replace: Uromyrtus sp. (Tinaroo Range G.P.Guymer 2034) reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Uromyrtus sp. (Tinaroo Range GPG 2034) replace: Uromyrtus sp. (Tinaroo Range G.P.Guymer 2034) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Utricularia sp. Theda (M.D.Barrett 2056) replace: Utricularia sp. Theda (M.D.Barrett MDB 2056) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia staminosa subsp. cylindracea var. cylindracea replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Waterhousea sp replace: Syzygium sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2860,38 +2860,38 @@ taxonomic_updates: - find: Wedelia cunninhami replace: Wedelia cunninghamii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wendlandia cannata replace: Wendlandia connata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Westringia capitonia replace: Westringia capitonis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea sp. (Mt Molloy L S S 3955) replace: Wilkiea sp. (Mt. Molloy LSS 3955) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea sp. (palmerston B H 80 RFK) replace: Wilkiea sp. (Palmerston BH 80RFK) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wrightia laevis ssp. millgar replace: Wrightia laevis subsp. millgar reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia pubescens ssp. penicillata replace: Wrightia pubescens subsp. penicillata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrightia pubescens ssp. pubescens replace: Wrightia pubescens subsp. pubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wrixonia sp replace: Prostanthera sp. [Sjostrom_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -2900,33 +2900,33 @@ taxonomic_updates: - find: Xanthostemon sp. Bolt Head (J.R.Clarkson + 8805) replace: Xanthostemon sp. Bolt Head (J.R.Clarkson+ 8805) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylopia sp. (Bertiehaugh Homestead C D C C173) replace: Xylopia sp. (Bertiehaugh Homestead) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp. (Mt Lewis G S 1108) replace: Xylosma sp. (Mt Lewis GS 1108) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp. (Temple Bay) replace: Xylosma sp. (Temple Bay P.I.Forster PIF8980) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xylosma sp. Mt Lewis (G.Sankowsky 1108) replace: Xylosma sp. Mt Lewis (G.Sankowsky+ 1108) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria sp. Brolga Park (A. R. Bean 1002) replace: Zieria sp. (Brolga Park A.R.Bean 1002) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/SmithMartin_2020/metadata.yml b/data/SmithMartin_2020/metadata.yml index 0658b7c66..5b26c6496 100644 --- a/data/SmithMartin_2020/metadata.yml +++ b/data/SmithMartin_2020/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location_name = "Tasmanian dry sclerophyll woodland", diff --git a/data/Smith_1996/metadata.yml b/data/Smith_1996/metadata.yml index 42b5d86e3..b1ce6cba5 100644 --- a/data/Smith_1996/metadata.yml +++ b/data/Smith_1996/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( life_stage = ifelse(contextual == "juvenile","juvenile", NA), @@ -429,30 +429,22 @@ traits: for the drying of herbarium specimens (Australia). substitutions: .na taxonomic_updates: -- find: Hydrocotyle sp - replace: Hydrocotyle sp. [Smith_1996] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lomandra sp. - replace: Lomandra sp. [Smith_1996] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Anodapetalum biglandulosum replace: Anodopetalum biglandulosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anopteris glandulosus replace: Anopterus glandulosus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blechnum watsii replace: Blechnum wattsii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalaria cephalobotrys replace: Cephalaralia cephalobotrys reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corybas sp replace: Corybas sp. [Smith_1996] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -462,11 +454,11 @@ taxonomic_updates: replace: Daphnandra sp. A reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drymophylla cyanocarpa replace: Drymophila cyanocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Graminoid no 1 replace: Poaceae sp. [graminoid no 1; Smith_1996] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth @@ -480,16 +472,24 @@ taxonomic_updates: - find: Grammitis billardieri replace: Grammitis billardierei reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hydrocotyle sp + replace: Hydrocotyle sp. [Smith_1996] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hyrocotyle pedicellosa replace: Hydrocotyle pedicellosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lomandra cf longifolia replace: Lomandra longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lomandra sp. + replace: Lomandra sp. [Smith_1996] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Luzuriaga sp. replace: Geitonoplesium sp. [Smith_1996] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -498,11 +498,11 @@ taxonomic_updates: - find: Pimelia drupacea replace: Pimelea drupacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp 2 replace: Pterostylis sp. 2 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trochocarpa aff cunninghamii replace: Trochocarpa sp. [Trochocarpa aff. cunninghamii; Smith_1996] reason: match_09. Rewording taxon with term `affinis` preceding species epithet diff --git a/data/Smith_2012/metadata.yml b/data/Smith_2012/metadata.yml index 8d75f239f..069efac31 100644 --- a/data/Smith_2012/metadata.yml +++ b/data/Smith_2012/metadata.yml @@ -27,7 +27,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site = "University of Western Sydney") %>% group_by(Species, Potnum, Temp, CO2, context, site) %>% diff --git a/data/Soliveres_2012/metadata.yml b/data/Soliveres_2012/metadata.yml index 66d9dfcd8..7cd4d9abd 100644 --- a/data/Soliveres_2012/metadata.yml +++ b/data/Soliveres_2012/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(dispersers = NA, fruit_fleshiness = NA) %>% move_values_to_new_trait( @@ -114,51 +114,51 @@ taxonomic_updates: - find: Alternanthera sp. replace: Alternanthera sp. [Soliveres_2012] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stackhousia sp. - replace: Stackhousia sp. [Soliveres_2012] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Atriplex spinibracrea replace: Atriplex spinibractea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bursaria spinosa subsp. microphylla replace: Bursaria spinosa var. microphylla reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Chorizema parviflora replace: Chorizema parviflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine tabacina species complex replace: Glycine tabacina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium involucrum replace: Gnaphalium involucratum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon juniperus replace: Leucopogon juniperinus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides nothosubsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Stackhousia sp. + replace: Stackhousia sp. [Soliveres_2012] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Vernonia cinerea var. cinerea replace: Vernonia cinerea subsp. cinerea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Soper_2014/metadata.yml b/data/Soper_2014/metadata.yml index 7f560ed3f..b96bda272 100644 --- a/data/Soper_2014/metadata.yml +++ b/data/Soper_2014/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( plant_growth_substrate = NA_character_ @@ -287,48 +287,40 @@ substitutions: find: mulga fern replace: fern taxonomic_updates: -- find: Acacia sp. - replace: Acacia sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eucalyptus sp. - replace: Eucalyptus sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Grevillea sp. - replace: Grevillea sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hakea sp. - replace: Hakea sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thyridolepis sp. - replace: Thyridolepis sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Triodia sp. - replace: Triodia sp. [Soper_2014] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia broadleaf sp. replace: Acacia sp. [Acacia broadleaf sp.; Soper_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Acacia sp. + replace: Acacia sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eucalyptus lancewood sp. replace: Eucalyptus sp. [Eucalyptus lancewood sp.; Soper_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus sp. + replace: Eucalyptus sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eucalyptus tetradonta replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Grevillea sp. + replace: Grevillea sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hakea sp. + replace: Hakea sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hakea suberia replace: Hakea suberea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Misteloe replace: Loranthaceae or Viscaceae [Misteloe; Soper_2014] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth @@ -339,11 +331,27 @@ taxonomic_updates: reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: family +- find: Mistletoe on Acacia + replace: Loranthaceae sp. [Mistletoe on Acacia] + reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: family - find: Mistletoe on Acacia aneura replace: Loranthaceae or Viscaceae [mistletoe on Acacia aneura; Soper_2014] reason: Manual matched to family for taxon that can't be matcheded to genus (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: family +- find: Mistletoe on Acacia aneura + replace: Loranthaceae sp. [Mistletoe on Acacia aneura] + reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: family +- find: Thyridolepis sp. + replace: Thyridolepis sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Triodia sp. + replace: Triodia sp. [Soper_2014] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Triodia sp. 1 replace: Triodia sp. [Triodia sp. 1; Soper_2014] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -354,13 +362,5 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Mistletoe on Acacia - replace: Loranthaceae sp. [Mistletoe on Acacia] - reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: family -- find: Mistletoe on Acacia aneura - replace: Loranthaceae sp. [Mistletoe on Acacia aneura] - reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: family exclude_observations: .na questions: .na diff --git a/data/Standish_2019/metadata.yml b/data/Standish_2019/metadata.yml index 01454e9c4..198cf0576 100644 --- a/data/Standish_2019/metadata.yml +++ b/data/Standish_2019/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site_name = "Jarrah_forest", @@ -216,7 +216,7 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank taxonomic_updates: - find: Freesia alba x leichtlinii replace: Freesia x [Freesia alba x leichtlinii; Standish_2019] @@ -227,7 +227,7 @@ taxonomic_updates: replace: Freesia leichtlinii subsp. leichtlinii x Freesia leichtlinii subsp. alba reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: - variable: taxon_name find: Disa bracteata diff --git a/data/Stephens_2021/metadata.yml b/data/Stephens_2021/metadata.yml index 29458dd24..4b0d15db5 100644 --- a/data/Stephens_2021/metadata.yml +++ b/data/Stephens_2021/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( measurement_remarks = ifelse(!is.na(Notes), @@ -73,15 +73,15 @@ taxonomic_updates: replace: Acacia kempeana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: ?Acacia ramulosa var. ramulosa replace: Acacia ramulosa var. ramulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mirbelia sp. Bursarioides (T..Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Stephens_2023/metadata.yml b/data/Stephens_2023/metadata.yml index 9f1415f1d..01d44bd99 100644 --- a/data/Stephens_2023/metadata.yml +++ b/data/Stephens_2023/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% group_by(canonicalName, trait_name) %>% mutate(value = paste0(value, collapse = " ")) %>% @@ -43,7 +43,7 @@ dataset: quantify the timing and environmental associations of pollination shifts. basis_of_record: literature life_stage: adult - sampling_strategy: "Scoring pollination mode ^p Pollination system or syndrome was + sampling_strategy: Scoring pollination mode ^p Pollination system or syndrome was scored for 1201 species across 434 plant families contained in the angiosperm phylogeny of Ramírez-Barahona et al. (2020). Where possible pollination was scored at species level (n = 1025), cross-checked against what is known of pollination @@ -84,9 +84,11 @@ dataset: was available these species were left as missing data (n = 41). Our final dataset included pollination information for 1160 of the 1201 species in 433 families (all except Hoplestigmataceae) in the Ramírez-Barahona et al. (2020) angiosperm - tree. Fully referenced data are available at https://doi.org/10.5281/zenodo.7592528." + tree. Fully referenced data are available at https://doi.org/10.5281/zenodo.7592528. original_file: original file is the data.csv file - no reformatting required - notes: The data are structured such that taxa with multiple different pollination modes (e.g. birds and bees) have multiple lines per species (i.e. one for `bird`, one for `bee`) rather than `bird bee`. + notes: The data are structured such that taxa with multiple different pollination + modes (e.g. birds and bees) have multiple lines per species (i.e. one for `bird`, + one for `bee`) rather than `bird bee`. locations: .na contexts: .na traits: @@ -97,7 +99,48 @@ traits: value_type: mode basis_of_value: expert_score replicates: .na - methods: "Scoring pollination mode ^p Pollination system or syndrome was scored for 1201 species across 434 plant families contained in the angiosperm phylogeny of Ramírez-Barahona et al. (2020). Where possible pollination was scored at species level (n = 1025), cross-checked against what is known of pollination in that genus and family, especially from the Kubitzki series (Kubitzki et al., 1993-2018). Where no information was available for a particular species they were scored at genus (n = 131), or family (n = 4) level. We obtained pollination data for 1160 of 1201 taxa, using the best available evidence to score the pollination system (n = 432) or syndrome (n = 728) for each taxon. Where possible, explicit studies of pollination ecology in a taxon's native range were preferred (n = 239), especially if these involved explicit tests for the occurrence of wind pollination (45 of these). Where these data were not available, we used records of floral visitation in combination with an interpretation of species floral syndrome (n = 193). ^p Where no field observations had been recorded, we interpreted species floral syndrome sensu Faegri & van der Pijl (1979) (n = 728). Although pollination syndromes can be inaccurate at fine taxonomic levels (Ollerton et al., 2009; van der Niet, 2021), they are effective predictors of the broad pollination groups used here (Rosas-Guerrero et al., 2014; Dellinger, 2020), especially wind pollination which has a well-defined suite of traits (Friedman & Barrett, 2008). Floral syndrome was interpreted from species descriptions, illustrations and images from various sources, including iNaturalist and eFloras (eFloras, 2022; iNaturalist, 2022), and informed by pollination syndrome data from trait databases including TRY (Kattge et al., 2020), BiolFlor (Kühn et al., 2004), and AusTraits (Falster et al., 2021). Full references are available in Supporting Information. ^p Floral syndrome was scored by considering all available evidence. To separate wind from animal pollinated flowers we assessed traits in Table 1 of Friedman & Barrett (2009) and pollen as described in Hu et al. (2008), particularly perianth size and colour, gynoecium size and shape, pollen and floral rewards (Table 1). To separate insect from vertebrate pollination syndromes we considered floral size and the robustness of floral parts, nectar quantity and the accessibility of floral rewards to different pollinators (e.g. the presence of poricidal anthers which only release pollen when vibrated by bees in buzz-pollinated flowers (Pritchard & Vallejo-Marín, 2020), Table 1). Water pollination was considered in the rare cases where plants had an aquatic habit and flowered near or under water (Ackerman, 2000). ^p Flowers were scored as polymorphic where there was evidence for more than one pollination mode, or where they were pollinated by animals but it was unclear whether this was vertebrate or insect pollination (n = 76). Where there was no evidence that pollination via external vectors occurred (in clonal or autogamous species) or no information was available these species were left as missing data (n = 41). Our final dataset included pollination information for 1160 of the 1201 species in 433 families (all except Hoplestigmataceae) in the Ramírez-Barahona et al. (2020) angiosperm tree. Fully referenced data are available at https://doi.org/10.5281/zenodo.7592528." + methods: Scoring pollination mode ^p Pollination system or syndrome was scored for + 1201 species across 434 plant families contained in the angiosperm phylogeny of + Ramírez-Barahona et al. (2020). Where possible pollination was scored at species + level (n = 1025), cross-checked against what is known of pollination in that genus + and family, especially from the Kubitzki series (Kubitzki et al., 1993-2018). + Where no information was available for a particular species they were scored at + genus (n = 131), or family (n = 4) level. We obtained pollination data for 1160 + of 1201 taxa, using the best available evidence to score the pollination system + (n = 432) or syndrome (n = 728) for each taxon. Where possible, explicit studies + of pollination ecology in a taxon's native range were preferred (n = 239), especially + if these involved explicit tests for the occurrence of wind pollination (45 of + these). Where these data were not available, we used records of floral visitation + in combination with an interpretation of species floral syndrome (n = 193). ^p + Where no field observations had been recorded, we interpreted species floral syndrome + sensu Faegri & van der Pijl (1979) (n = 728). Although pollination syndromes can + be inaccurate at fine taxonomic levels (Ollerton et al., 2009; van der Niet, 2021), + they are effective predictors of the broad pollination groups used here (Rosas-Guerrero + et al., 2014; Dellinger, 2020), especially wind pollination which has a well-defined + suite of traits (Friedman & Barrett, 2008). Floral syndrome was interpreted from + species descriptions, illustrations and images from various sources, including + iNaturalist and eFloras (eFloras, 2022; iNaturalist, 2022), and informed by pollination + syndrome data from trait databases including TRY (Kattge et al., 2020), BiolFlor + (Kühn et al., 2004), and AusTraits (Falster et al., 2021). Full references are + available in Supporting Information. ^p Floral syndrome was scored by considering + all available evidence. To separate wind from animal pollinated flowers we assessed + traits in Table 1 of Friedman & Barrett (2009) and pollen as described in Hu et + al. (2008), particularly perianth size and colour, gynoecium size and shape, pollen + and floral rewards (Table 1). To separate insect from vertebrate pollination syndromes + we considered floral size and the robustness of floral parts, nectar quantity + and the accessibility of floral rewards to different pollinators (e.g. the presence + of poricidal anthers which only release pollen when vibrated by bees in buzz-pollinated + flowers (Pritchard & Vallejo-Marín, 2020), Table 1). Water pollination was considered + in the rare cases where plants had an aquatic habit and flowered near or under + water (Ackerman, 2000). ^p Flowers were scored as polymorphic where there was + evidence for more than one pollination mode, or where they were pollinated by + animals but it was unclear whether this was vertebrate or insect pollination (n + = 76). Where there was no evidence that pollination via external vectors occurred + (in clonal or autogamous species) or no information was available these species + were left as missing data (n = 41). Our final dataset included pollination information + for 1160 of the 1201 species in 433 families (all except Hoplestigmataceae) in + the Ramírez-Barahona et al. (2020) angiosperm tree. Fully referenced data are + available at https://doi.org/10.5281/zenodo.7592528. - var_in: pollination_system unit_in: .na trait_name: pollination_system @@ -105,7 +148,48 @@ traits: value_type: mode basis_of_value: expert_score replicates: .na - methods: "Scoring pollination mode ^p Pollination system or syndrome was scored for 1201 species across 434 plant families contained in the angiosperm phylogeny of Ramírez-Barahona et al. (2020). Where possible pollination was scored at species level (n = 1025), cross-checked against what is known of pollination in that genus and family, especially from the Kubitzki series (Kubitzki et al., 1993-2018). Where no information was available for a particular species they were scored at genus (n = 131), or family (n = 4) level. We obtained pollination data for 1160 of 1201 taxa, using the best available evidence to score the pollination system (n = 432) or syndrome (n = 728) for each taxon. Where possible, explicit studies of pollination ecology in a taxon's native range were preferred (n = 239), especially if these involved explicit tests for the occurrence of wind pollination (45 of these). Where these data were not available, we used records of floral visitation in combination with an interpretation of species floral syndrome (n = 193). ^p Where no field observations had been recorded, we interpreted species floral syndrome sensu Faegri & van der Pijl (1979) (n = 728). Although pollination syndromes can be inaccurate at fine taxonomic levels (Ollerton et al., 2009; van der Niet, 2021), they are effective predictors of the broad pollination groups used here (Rosas-Guerrero et al., 2014; Dellinger, 2020), especially wind pollination which has a well-defined suite of traits (Friedman & Barrett, 2008). Floral syndrome was interpreted from species descriptions, illustrations and images from various sources, including iNaturalist and eFloras (eFloras, 2022; iNaturalist, 2022), and informed by pollination syndrome data from trait databases including TRY (Kattge et al., 2020), BiolFlor (Kühn et al., 2004), and AusTraits (Falster et al., 2021). Full references are available in Supporting Information. ^p Floral syndrome was scored by considering all available evidence. To separate wind from animal pollinated flowers we assessed traits in Table 1 of Friedman & Barrett (2009) and pollen as described in Hu et al. (2008), particularly perianth size and colour, gynoecium size and shape, pollen and floral rewards (Table 1). To separate insect from vertebrate pollination syndromes we considered floral size and the robustness of floral parts, nectar quantity and the accessibility of floral rewards to different pollinators (e.g. the presence of poricidal anthers which only release pollen when vibrated by bees in buzz-pollinated flowers (Pritchard & Vallejo-Marín, 2020), Table 1). Water pollination was considered in the rare cases where plants had an aquatic habit and flowered near or under water (Ackerman, 2000). ^p Flowers were scored as polymorphic where there was evidence for more than one pollination mode, or where they were pollinated by animals but it was unclear whether this was vertebrate or insect pollination (n = 76). Where there was no evidence that pollination via external vectors occurred (in clonal or autogamous species) or no information was available these species were left as missing data (n = 41). Our final dataset included pollination information for 1160 of the 1201 species in 433 families (all except Hoplestigmataceae) in the Ramírez-Barahona et al. (2020) angiosperm tree. Fully referenced data are available at https://doi.org/10.5281/zenodo.7592528." + methods: Scoring pollination mode ^p Pollination system or syndrome was scored for + 1201 species across 434 plant families contained in the angiosperm phylogeny of + Ramírez-Barahona et al. (2020). Where possible pollination was scored at species + level (n = 1025), cross-checked against what is known of pollination in that genus + and family, especially from the Kubitzki series (Kubitzki et al., 1993-2018). + Where no information was available for a particular species they were scored at + genus (n = 131), or family (n = 4) level. We obtained pollination data for 1160 + of 1201 taxa, using the best available evidence to score the pollination system + (n = 432) or syndrome (n = 728) for each taxon. Where possible, explicit studies + of pollination ecology in a taxon's native range were preferred (n = 239), especially + if these involved explicit tests for the occurrence of wind pollination (45 of + these). Where these data were not available, we used records of floral visitation + in combination with an interpretation of species floral syndrome (n = 193). ^p + Where no field observations had been recorded, we interpreted species floral syndrome + sensu Faegri & van der Pijl (1979) (n = 728). Although pollination syndromes can + be inaccurate at fine taxonomic levels (Ollerton et al., 2009; van der Niet, 2021), + they are effective predictors of the broad pollination groups used here (Rosas-Guerrero + et al., 2014; Dellinger, 2020), especially wind pollination which has a well-defined + suite of traits (Friedman & Barrett, 2008). Floral syndrome was interpreted from + species descriptions, illustrations and images from various sources, including + iNaturalist and eFloras (eFloras, 2022; iNaturalist, 2022), and informed by pollination + syndrome data from trait databases including TRY (Kattge et al., 2020), BiolFlor + (Kühn et al., 2004), and AusTraits (Falster et al., 2021). Full references are + available in Supporting Information. ^p Floral syndrome was scored by considering + all available evidence. To separate wind from animal pollinated flowers we assessed + traits in Table 1 of Friedman & Barrett (2009) and pollen as described in Hu et + al. (2008), particularly perianth size and colour, gynoecium size and shape, pollen + and floral rewards (Table 1). To separate insect from vertebrate pollination syndromes + we considered floral size and the robustness of floral parts, nectar quantity + and the accessibility of floral rewards to different pollinators (e.g. the presence + of poricidal anthers which only release pollen when vibrated by bees in buzz-pollinated + flowers (Pritchard & Vallejo-Marín, 2020), Table 1). Water pollination was considered + in the rare cases where plants had an aquatic habit and flowered near or under + water (Ackerman, 2000). ^p Flowers were scored as polymorphic where there was + evidence for more than one pollination mode, or where they were pollinated by + animals but it was unclear whether this was vertebrate or insect pollination (n + = 76). Where there was no evidence that pollination via external vectors occurred + (in clonal or autogamous species) or no information was available these species + were left as missing data (n = 41). Our final dataset included pollination information + for 1160 of the 1201 species in 433 families (all except Hoplestigmataceae) in + the Ramírez-Barahona et al. (2020) angiosperm tree. Fully referenced data are + available at https://doi.org/10.5281/zenodo.7592528. substitutions: .na taxonomic_updates: .na exclude_observations: .na diff --git a/data/Stewart_1995/metadata.yml b/data/Stewart_1995/metadata.yml index b71db2df2..bd0fb72df 100644 --- a/data/Stewart_1995/metadata.yml +++ b/data/Stewart_1995/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Ian Wright, Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( date = ifelse(site == "Loganholme","1992-12",NA), @@ -255,23 +255,19 @@ substitutions: find: s or t (root parasite, at least early on in life) replace: shrub tree taxonomic_updates: -- find: Parsonsia sp. - replace: Parsonsia sp. [Stewart_1995] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus - find: Acacia harpophylla Host replace: Acacia harpophylla reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Achmena ingens replace: Acmena ingens reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adianthum formosum replace: Adiantum formosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arachodendropsis Host replace: Archidendropsis sp. [Arachodendropsis Host; Stewart_1995] reason: match_22_fuzzy. Aligning name with fuzzy matches genus accepted by APC (2022-11-10) @@ -279,28 +275,28 @@ taxonomic_updates: - find: Argyrodendron trifoliatum replace: Argyrodendron trifoliolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex lindegi replace: Atriplex lindleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistemon saligna replace: Callistemon salignus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia nemophylla var. nemophylla replace: Cassia nemophila var. nemophila reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cassia nemophylla var. zygophylla replace: Cassia nemophila var. zygophylla reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cassia phylodinia replace: Cassia phyllodinea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cedrela aclerata replace: Cedrela sp. [Cedrela aclerata; Stewart_1995] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -309,17 +305,17 @@ taxonomic_updates: - find: Dubosia myoporoides replace: Duboisia myoporoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp.1 replace: Eremophila sp. [Eremophila sp.1; Stewart_1995] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eremophila sp.2 replace: Eremophila sp. [Eremophila sp.2; Stewart_1995] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Erimophylla sp.1 replace: Eremophila sp. [Erimophylla sp.1; Stewart_1995] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -333,60 +329,64 @@ taxonomic_updates: - find: Exocarpus latifolius replace: Exocarpos latifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gallium migrans replace: Galium migrans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium solandre replace: Geranium solanderi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gmelina leichhardii replace: Gmelina leichhardtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana tomentosa ? replace: Maireana tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca quinquinervia replace: Melaleuca quinquenervia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neobasia proseriflora replace: Neobassia proceriflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandorea jasminoides ? replace: Pandorea jasminoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Parsonsia sp. + replace: Parsonsia sp. [Stewart_1995] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pennatia cunninghamii replace: Pennantia cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. artemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tasmania insipida replace: Tasmannia insipida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Khaya nyasica, Khaya nyastica diff --git a/data/Sweedman_2006/metadata.yml b/data/Sweedman_2006/metadata.yml index b6d69cbf4..f574078c4 100644 --- a/data/Sweedman_2006/metadata.yml +++ b/data/Sweedman_2006/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(across(c("quickest time to germinate", "longest time to germinate"), ~na_if(.x, 0))) ' @@ -242,39 +242,43 @@ traits: seeds for over 18 months after sowing so that exposure to summer temperatures and then winter rains and cooler temperatures would assist with dormancy breaking. The use of the recommended pre-treatments has helped to break seed dormancy and - provide more reliable germination times and simultaneous germination. + provide more reliable germination times and simultaneous germination. substitutions: - - trait_name: seed_germination_treatment - find: HW - replace: imbibe_hot - - trait_name: seed_germination_treatment - find: SMK - replace: smoke - - trait_name: seed_germination_treatment - find: None - replace: none - - trait_name: seed_germination_treatment - find: Light - replace: light - - trait_name: seed_germination_treatment - find: 100°C/3h - replace: heat - - trait_name: seed_germination_treatment - find: RB - replace: scarify - - trait_name: seed_germination_treatment - find: 100°C/10m - replace: heat - - trait_name: seed_germination_treatment - find: SMK+GA - replace: smoke chemical_treatment - - trait_name: seed_germination_treatment - find: GA - replace: chemical_treatment - - trait_name: seed_germination_treatment - find: 80°C/3h + SMK - replace: heat smoke +- trait_name: seed_germination_treatment + find: HW + replace: imbibe_hot +- trait_name: seed_germination_treatment + find: SMK + replace: smoke +- trait_name: seed_germination_treatment + find: None + replace: none +- trait_name: seed_germination_treatment + find: Light + replace: light +- trait_name: seed_germination_treatment + find: 100°C/3h + replace: heat +- trait_name: seed_germination_treatment + find: RB + replace: scarify +- trait_name: seed_germination_treatment + find: 100°C/10m + replace: heat +- trait_name: seed_germination_treatment + find: SMK+GA + replace: smoke chemical_treatment +- trait_name: seed_germination_treatment + find: GA + replace: chemical_treatment +- trait_name: seed_germination_treatment + find: 80°C/3h + SMK + replace: heat smoke taxonomic_updates: +- find: Abutilon indicum var. indicum + replace: Abutilon indicum + reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) + taxonomic_resolution: species - find: Acacia aff. sclerosperma replace: Acacia sp. [Acacia aff. sclerosperma; Sweedman_2006] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -284,72 +288,72 @@ taxonomic_updates: replace: Acacia drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina acutivalvis var. prinsepiana replace: Allocasuarina acutivalvis subsp. prinsepiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-09) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anigozanthos manglesii var variant replace: Anigozanthos manglesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthos manglesii var dark green replace: Anigozanthos manglesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma xerophyllurn replace: Astroloma xerophyllum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex nurnrnularia replace: Atriplex nummularia reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex purnilio replace: Atriplex pumilio reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atriplex sernilunaris replace: Atriplex semilunaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa elegantissirna replace: Austrostipa elegantissima reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea camphorosrnae replace: Baeckea camphorosmae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea starninosa replace: Baeckea staminosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea tenuirarnea replace: Baeckea tenuiramea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Balaustion pulcherrirnum replace: Balaustion pulcherrimum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia charnaephyton replace: Banksia chamaephyton reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia lind1eyana replace: Banksia lindleyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia menziesii var bronze replace: Banksia menziesii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia prionotes x hookeriana replace: Banksia x [Banksia prionotes x hookeriana; Sweedman_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -359,54 +363,54 @@ taxonomic_updates: replace: Banksia sphaerocarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachychiton viscidulum replace: Brachychiton viscidulus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome iberidifolia dark blue form replace: Brachyscome iberidifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Burchardia conjesta replace: Burchardia congesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus valid us replace: Calothamnus validus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix brevifolia subsp. stipulosa replace: Calytrix breviseta subsp. stipulosa reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cephalipterum drummondii large cream replace: Cephalipterum drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalipterum drummondii large yellow replace: Cephalipterum drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalipterum drummondii small white replace: Cephalipterum drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalipterum drummondii small yellow replace: Cephalipterum drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chorizema varium x ilicifolium replace: Chorizema x [Chorizema varium x ilicifolium; Sweedman_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -415,7 +419,7 @@ taxonomic_updates: - find: Conospermum rassinervium replace: Conospermum crassinervium reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis candicans x aculeata replace: Conostylis x [Conostylis candicans x aculeata; Sweedman_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -425,11 +429,11 @@ taxonomic_updates: replace: Corymbia calophylla reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis trigonis replace: Cucumis trigonis reason: match_08. Automatic alignment with synonymous name in APNI (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis clarkeyi replace: Eragrostis sp. [Eragrostis clarkeyi; Sweedman_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -444,22 +448,26 @@ taxonomic_updates: replace: Eucalyptus x bennettiae reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus caesia dwarf form replace: Eucalyptus caesia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eyreana replace: Eucalyptus eyreana MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eucalyptus eyreana MS + replace: Eucalyptus pleurocarpa + reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) + taxonomic_resolution: species - find: Eucalyptus lateritica replace: Eucalyptus x lateritica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus macrocarpa x pyriformis replace: Eucalyptus x [Eucalyptus macrocarpa x pyriformis; Sweedman_2006] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -473,15 +481,19 @@ taxonomic_updates: - find: Eucalyptus tetragona replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus virginae replace: Eucalyptus virginea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Euromyrtus leptospermoides + replace: Euryomyrtus leptospermoides + reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) + taxonomic_resolution: .na.character - find: Gastrolobium cuneata replace: Gastrolobium cuneatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium aff. aristatum replace: Gompholobium sp. [Gompholobium aff. aristatum; Sweedman_2006] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -490,7 +502,7 @@ taxonomic_updates: - find: Gompholobium polymorphurn replace: Gompholobium polymorphum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena 'Meda' replace: Gomphrena sp. [Gomphrena 'Meda'; Sweedman_2006] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -499,101 +511,90 @@ taxonomic_updates: - find: Gossypium sturtianurn replace: Gossypium sturtianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea erinaceae replace: Hakea erinacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species -- find: Marianthus coeruleo-punctatus - replace: Marianthus coeruleopunctatus - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species -- find: Pelargonium australe subsp. drummondii - replace: Pelargonium australe - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2023-06-09) - taxonomic_resolution: Species -- find: Rhodanthe chlorocephala small white - replace: Rhodanthe chlorocephala - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2023-06-09) - taxonomic_resolution: Species -- find: Rhodanthe manglesii album - replace: Rhodanthe manglesii var. alba - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) - taxonomic_resolution: Varietas -- find: Rhodanthe manglesii variant - replace: Rhodanthe manglesii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2023-06-09) - taxonomic_resolution: Species -- find: Rhodanthe pollackii - replace: Rhodanthe polakii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) - taxonomic_resolution: Species -- find: Sida virgata var. phaetricha - replace: Sida virgata var. phaeotricha - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) - taxonomic_resolution: Varietas -- find: Verticordia fimbrilepis subsp. fimbrilepis - replace: Verticordia fimbrilepis subsp. fimbrilepis - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2023-06-09) - taxonomic_resolution: Subspecies -- find: Euromyrtus leptospermoides - replace: Euryomyrtus leptospermoides - reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) -- find: Eucalyptus eyreana MS - replace: Eucalyptus pleurocarpa - reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostamen peltiger replace: Malleostemon peltiger reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostamen roseus replace: Malleostemon roseus reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mallophora globiflora replace: Dicrastylis globiflora reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Marianthus coeruleo-punctatus + replace: Marianthus coeruleopunctatus + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) + taxonomic_resolution: species - find: Morgania pubescens replace: Stemodia pubescens reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Othonna gregorii replace: Senecio gregorii reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pelargonium australe subsp. drummondii + replace: Pelargonium australe + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2023-06-09) + taxonomic_resolution: species - find: Plectronia latifolia replace: Psydrax latifolia reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podocoma cuneifolia replace: Ixiochlamys cuneifolia reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Rhodanthe chlorocephala small white + replace: Rhodanthe chlorocephala + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2023-06-09) + taxonomic_resolution: species +- find: Rhodanthe manglesii album + replace: Rhodanthe manglesii var. alba + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) + taxonomic_resolution: varietas - find: Rhodanthe manglesii var. alba replace: Rhodanthe manglesii reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Rhodanthe manglesii variant + replace: Rhodanthe manglesii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2023-06-09) + taxonomic_resolution: species +- find: Rhodanthe pollackii + replace: Rhodanthe polakii + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-09) + taxonomic_resolution: species - find: Rulingia sp. Trigwell Bridge replace: Commersonia erythrogyna reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida virgata var. phaeotricha replace: Sida phaeotricha reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida virgata var. phaetricha + replace: Sida virgata var. phaeotricha + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-09) + taxonomic_resolution: varietas - find: Sollya fusiformis replace: Billardiera fusiformis reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species -- find: Abutilon indicum var. indicum - replace: Abutilon indicum - reason: Manual rewording to align with APC accepted name (E. Wenk, 2023-06-09) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Verticordia fimbrilepis subsp. fimbrilepis + replace: Verticordia fimbrilepis subsp. fimbrilepis + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2023-06-09) + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/TMAG_2009/metadata.yml b/data/TMAG_2009/metadata.yml index 62ada1bef..d997f6fc7 100644 --- a/data/TMAG_2009/metadata.yml +++ b/data/TMAG_2009/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( flowering = convert_month_range_vec_to_binary(flowering), @@ -336,42 +336,42 @@ taxonomic_updates: - find: Australina pusilla subsp. Pusila replace: Australina pusilla subsp. pusilla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucryphia milliganii subsp. Pubsecens replace: Eucryphia milliganii subsp. pubescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Exocarpus syrticola replace: Exocarpos syrticola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia candolleana subp. Candolleana replace: Rhagodia candolleana subsp. candolleana reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sarcocornia quinqueflora subsp. Quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Sarcocornia quinqueflora subsp. Tasmanica + replace: Sarcocornia quinqueflora subsp. tasmanica + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-23) + taxonomic_resolution: subspecies - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Tetratheca sp. Flinders Island replace: Tetratheca sp. Flinders Island (T.Rudman s.n. HO510551) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Freycinet Pen. (A.C.Rozefelds 323) replace: Tetratheca sp. Freycinet Peninsula (A.C.Rozefelds 323) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Sarcocornia quinqueflora subsp. Tasmanica - replace: Sarcocornia quinqueflora subsp. tasmanica - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-23) - taxonomic_resolution: Subspecies + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Taseski_2017/metadata.yml b/data/Taseski_2017/metadata.yml index 53cfd9864..2ab161daf 100644 --- a/data/Taseski_2017/metadata.yml +++ b/data/Taseski_2017/metadata.yml @@ -24,7 +24,7 @@ contributors: dataset_curators: Caitlan Baxter dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "Royal National Park", `latitude (deg)` + custom_R_code: data %>% mutate(site_name = "Royal National Park", `latitude (deg)` = -34.095339, `longitude (deg)` = 151.152769) collection_date: 2016/2017 taxon_name: species @@ -187,6 +187,6 @@ taxonomic_updates: - find: Hypoleana fastigata replace: Hypolaena fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Thomas_2017/metadata.yml b/data/Thomas_2017/metadata.yml index e9c5ad56d..1cec3fc5b 100644 --- a/data/Thomas_2017/metadata.yml +++ b/data/Thomas_2017/metadata.yml @@ -37,7 +37,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( site = ifelse(Yrs %in% c(15, 28, 36, 41, 86), paste(site,"_",Yrs,sep=""), site), @@ -303,6 +303,6 @@ taxonomic_updates: - find: Acacia bractybotrya replace: Acacia brachybotrya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Thompson_2001/metadata.yml b/data/Thompson_2001/metadata.yml index a814ba37b..b84811612 100644 --- a/data/Thompson_2001/metadata.yml +++ b/data/Thompson_2001/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2001 taxon_name: binomial diff --git a/data/Tng_2013/metadata.yml b/data/Tng_2013/metadata.yml index cbf2ac5fd..21a49c392 100644 --- a/data/Tng_2013/metadata.yml +++ b/data/Tng_2013/metadata.yml @@ -30,7 +30,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaflet_area = ifelse(name_original == "Acacia dealbata", `leaf area mm2`, NA), @@ -221,23 +221,23 @@ taxonomic_updates: - find: Alphitonia whitea replace: Alphitonia whitei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alstonia mulleriana replace: Alstonia muelleriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia trinervia replace: Cassinia trinerva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedycarya loxocarpa replace: Hedycarya loxocarya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum laenigerum replace: Leptospermum lanigerum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: leaf slenderness (ratio of leaf length to width) and an index diff --git a/data/Toelken_1996/metadata.yml b/data/Toelken_1996/metadata.yml index d2a2ab77f..13c1492c7 100644 --- a/data/Toelken_1996/metadata.yml +++ b/data/Toelken_1996/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/1996 taxon_name: binomial @@ -166,6 +166,6 @@ taxonomic_updates: - find: Kunzea erioclayx replace: Kunzea eriocalyx reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Togashi_2015/metadata.yml b/data/Togashi_2015/metadata.yml index f8c90e186..d71085515 100644 --- a/data/Togashi_2015/metadata.yml +++ b/data/Togashi_2015/metadata.yml @@ -353,7 +353,7 @@ contributors: dataset_curators: Gillian Kowalick dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(!References %in% c("Brodribb and Felid 2000", "Canham et al. 2009", "Cernusak et al. 2006", "Choat et al. 2005", "McClenahan et al. 2004", "OGrady et al. 2009", "Zanne (2007, unpublished)", "Taylor and Eamus 2008", "Westoby and Wright 2003", "Yunusa et al. 2010", @@ -572,6 +572,6 @@ taxonomic_updates: - find: Eucalyptus gomphocelia replace: Eucalyptus gomphocephala reason: Manual alignment to correct APC spelling (E. Wenk, 2023-06-26) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Tolsma_2007/metadata.yml b/data/Tolsma_2007/metadata.yml index 678a59ca8..1a6caf944 100644 --- a/data/Tolsma_2007/metadata.yml +++ b/data/Tolsma_2007/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location_name = "Mt Reynard Plateau", @@ -459,11 +459,11 @@ taxonomic_updates: - find: Aciphylla galcialis replace: Aciphylla glacialis reason: Correct typo manually (E. Wenk, 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron nitidus replace: Pappochroma nitidum reason: Align to current APC-accepted name (E. Wenk, 2023-05-04) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: additional_traits: root_fleshiness diff --git a/data/Trudgen_2005/metadata.yml b/data/Trudgen_2005/metadata.yml index a8ba5ec5c..4d1e85603 100644 --- a/data/Trudgen_2005/metadata.yml +++ b/data/Trudgen_2005/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: unknown/2005 taxon_name: species diff --git a/data/Trudgen_2014/metadata.yml b/data/Trudgen_2014/metadata.yml index 03ff0ccd7..2c9edfec6 100644 --- a/data/Trudgen_2014/metadata.yml +++ b/data/Trudgen_2014/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering + custom_R_code: data %>% mutate(flowering_time = sprintf("%s-%s", month.abb[`flowering month begin`], month.abb[`flowering month end`]) %>% convert_month_range_vec_to_binary()) collection_date: 2014/2014 taxon_name: binomial @@ -200,54 +200,54 @@ taxonomic_updates: - find: Thyrptomene caduca replace: Thryptomene caduca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene calicola replace: Thryptomene calcicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene hubbardii replace: Thryptomene hubbardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene nitida replace: Thryptomene nitida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene orbiculata replace: Thryptomene orbiculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene pinifolia replace: Thryptomene pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene podantha replace: Thryptomene podantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene repens replace: Thryptomene repens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene shirleyae replace: Thryptomene shirleyae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene spicata replace: Thryptomene spicata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene stapfii replace: Thryptomene stapfii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene velutina replace: Thryptomene velutina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thyrptomene wannooensis replace: Thryptomene wannooensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Tsakalos_2020/metadata.yml b/data/Tsakalos_2020/metadata.yml index f17068a04..4192949d6 100644 --- a/data/Tsakalos_2020/metadata.yml +++ b/data/Tsakalos_2020/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Species = ifelse(is.na(`Original Taxonomic Concept`),Species,`Original Taxonomic Concept`) @@ -544,188 +544,188 @@ taxonomic_updates: - find: Acacia saligna subsp. lindleyi replace: Acacia saligna subsp. lindleyi MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acanthocarpus sp. Ajana (C.A. Gardner 8596) replace: Acanthocarpus sp. Ajana (C.A.Gardner 8596) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthos viridis subsp. Cataby (S.D. Hopper 1786) replace: Anigozanthos viridis subsp. Cataby (S.D.Hopper 1786) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa sp. Marchagee (B.R. Maslin 1407) replace: Austrostipa sp. Marchagee (B.R.Maslin 1407) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Babingtonia grandiflora replace: Babingtonia grandiflora reason: match_08. Automatic alignment with synonymous name in APNI (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick (G.J. Keighery 10905) replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha glabella forma bicallosa replace: Cassytha glabella f. bicallosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Cassytha glabella forma dispar replace: Cassytha glabella f. dispar reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Cassytha glabella forma glabella replace: Cassytha glabella f. glabella reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Cassytha racemosa forma pilosa replace: Cassytha racemosa f. pilosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Cassytha racemosa forma racemosa replace: Cassytha racemosa f. racemosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Darwinia sp. Watheroo (I.R. McGill 20) replace: Darwinia sp. Watheroo (I.R.McGill 20) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. palustre (G.J. Keighery 13459) replace: Eryngium pinnatifidum subsp. Palustre (G.J.Keighery 13459) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium pinnatifidum subsp. pinnatifidum replace: Eryngium pinnatifidum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pulchella subsp. Coastal Plain A (M. Hislop 634) replace: Goodenia pulchella subsp. Coastal Plain A (M.Hislop 634) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea thelemanniana subsp. Cooljarloo (B.J. Keighery 28 B) replace: Grevillea thelemanniana subsp. Cooljarloo (B.J.Keighery 28 B) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus floribundus subsp. Hill River (E.M. Bennett 2252) replace: Hybanthus floribundus subsp. Hill River (E.M.Bennett 2252) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hypocalymma sp. Nambung (R. Spjut & R. Smith s.n. 22/09/1992) replace: Hypocalymma sp. Nambung (R.Spjut & R.Smith s.n. 22/09/1992) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E. Ried 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K. Shepherd & C. Wilkins KS 220) replace: Lasiopetalum sp. Watheroo (K.Shepherd & C.Wilkins KS 220) reason: match_08. Automatic alignment with synonymous name in APNI (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mid West (J.S. Beard 7388) replace: Leucopogon sp. Mid West (J.S.Beard 7388) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Northern ciliate (R. Davis 3393) replace: Leucopogon sp. Northern ciliate (R.Davis 3393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Kennedy Range (G. Byrne 66) replace: Olearia sp. Kennedy Range (G.Byrne 66) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Eneabba (R. Hnatiuk 770001) replace: Platysace sp. Eneabba (R.Hnatiuk 770001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens subsp. Northern Sandplains (R.J. Cranfield & P.J. Spencer 8445) replace: Scaevola repens subsp. Northern Sandplains (R.J.Cranfield & P.J.Spencer 8445) reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus sesquispiculus replace: Schoenus sesquispicula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 ciliate sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. smooth culms (K.R. Newbey 7823) replace: Schoenus sp. smooth culms (Newbey 7823) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus subflavus subsp. subflavus replace: Schoenus subflavus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eneabba (S. Maley 8) replace: Scholtzia sp. Eneabba (S.Maley 8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Winchester (C. Chapman s.n. Perth 05625386) replace: Scholtzia sp. Winchester (C.Chapman s.n. PERTH 05625386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Wongonderrah (M.E. & M.R. Trudgen MET 12000) replace: Scholtzia sp. Wongonderrah (M.E.& M.R.Trudgen MET 12000) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vulpia myuros forma megalura replace: Vulpia myuros f. megalura reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Vulpia myuros forma myuros replace: Vulpia myuros f. myuros reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2023-06-21) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Xanthorrhoea sp. Lesueur (G.J. Keighery 16404) replace: Xanthorrhoea sp. Lesueur (G.J.Keighery 16404) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-06-21) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Tsakalos_2022/metadata.yml b/data/Tsakalos_2022/metadata.yml index 6e8e3c479..5575e50db 100644 --- a/data/Tsakalos_2022/metadata.yml +++ b/data/Tsakalos_2022/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( vegetative_reproduction_ability = ifelse(CGO == "NC", "not_vegetative", "vegetative"), @@ -237,94 +237,94 @@ taxonomic_updates: - find: Babingtonia grandiflora replace: Baeckea grandiflora reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cyanothamnus coerulescens + replace: Boronia coerulescens + reason: Align with APC accepted name (E. Wenk, 2023-05-22) + taxonomic_resolution: species +- find: Cyanothamnus ramosus + replace: Boronia ramosa + reason: Align with APC accepted name (E. Wenk, 2023-05-22) + taxonomic_resolution: species - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Northern ciliate (R. Davis 3393) replace: Leucopogon sp. Northern ciliate (R.Davis 3393) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macrozamia sp. Eneabba (D.L. Jones 12402) replace: Macrozamia fraseri reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. Kennedy Range (G. Byrne 66) replace: Olearia sp. Kennedy Range (G.Byrne 66) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 Ciliate Sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Wongonderrah (M.E. & M.R. Trudgen MET 12000) replace: Scholtzia sp. Wongonderrah (M.E.& M.R.Trudgen MET 12000) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia trilocularis replace: Scholtzia sp. Eneabba (S.Maley 8) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia conostephioides replace: Leucopogon conostephioides reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia hispida replace: Leucopogon hispidus reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species -- find: Styphelia microdonta + taxonomic_resolution: species +- find: Styphelia microdonta replace: Astroloma microdonta reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia oblongifolia replace: Astroloma oblongifolium reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia sp. Eneabba (N. Marchant s.n. PERTH 01291777) replace: Astroloma sp. Eneabba (N.Marchant s.n. PERTH 01291777) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia stomarrhena replace: Astroloma stomarrhena reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia tortifolia replace: Astroloma glaucescens reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Styphelia xerophylla replace: Astroloma xerophyllum reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthorrhoea sp. Lesueur (G.J. Keighery 16404) - replace: Xanthorrhoea sp. Lesueur (G.J.Keighery 16404) - reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species -- find: Cyanothamnus ramosus - replace: Boronia ramosa - reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species -- find: Cyanothamnus coerulescens - replace: Boronia coerulescens + replace: Xanthorrhoea sp. Lesueur (G.J.Keighery 16404) reason: Align with APC accepted name (E. Wenk, 2023-05-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Turner_2010/metadata.yml b/data/Turner_2010/metadata.yml index d721ac510..0a78378fd 100644 --- a/data/Turner_2010/metadata.yml +++ b/data/Turner_2010/metadata.yml @@ -31,7 +31,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(`average%C` = if_else(is.na(`av C% 2.Result`),`av C% 1.Result`,((`av C% 1.Result`+`av C% 2.Result`)/2)), N_percent = if_else(is.na(`N 2.Result`),`N 1.Result`,((`N 1.Result`+`N 2.Result`)/2))) %>% mutate(leaf_count = `Leaf area (cm2)`/`Leaf size [area/Leaf]`, leaf_dry_mass = `Dry matter (g)`/leaf_count) %>% mutate(basis_of_record = ifelse(Species == "Eucalyptus leptopoda","field","common garden")) + custom_R_code: data %>% mutate(`average%C` = if_else(is.na(`av C% 2.Result`),`av C% 1.Result`,((`av C% 1.Result`+`av C% 2.Result`)/2)), N_percent = if_else(is.na(`N 2.Result`),`N 1.Result`,((`N 1.Result`+`N 2.Result`)/2))) %>% mutate(leaf_count = `Leaf area (cm2)`/`Leaf size [area/Leaf]`, leaf_dry_mass = `Dry matter (g)`/leaf_count) %>% mutate(basis_of_record = ifelse(Species == "Eucalyptus leptopoda","field","common garden")) collection_date: '2005-08-19' taxon_name: Species location_name: location @@ -202,18 +202,18 @@ taxonomic_updates: - find: Eucalyptus calastroides replace: Eucalyptus celastroides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus calcogona replace: Eucalyptus calycogona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus straticalyx replace: Eucalyptus striaticalyx reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldfieldii replace: Eucalyptus oldfieldii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Veneklaas_2003/metadata.yml b/data/Veneklaas_2003/metadata.yml index 814a6e3bc..0a68ddb19 100644 --- a/data/Veneklaas_2003/metadata.yml +++ b/data/Veneklaas_2003/metadata.yml @@ -335,11 +335,11 @@ taxonomic_updates: - find: Drosera sp replace: Drosera sp. [Veneklaas_2003] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Pterostylis sp replace: Pterostylis sp. [Veneklaas_2003] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Stylidium sp replace: Stylidium sp. [Veneklaas_2003] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Venn_2011/metadata.yml b/data/Venn_2011/metadata.yml index 20778a92e..f46af3455 100644 --- a/data/Venn_2011/metadata.yml +++ b/data/Venn_2011/metadata.yml @@ -29,7 +29,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site = "Main Range, Kosciuszko National Park") + custom_R_code: data %>% mutate(site = "Main Range, Kosciuszko National Park") collection_date: 2008/2009 taxon_name: SPECIES location_name: site @@ -133,29 +133,29 @@ taxonomic_updates: - find: Erigeron bellidoides replace: Erigeron bellidioides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia collina sub sp diversitcolour replace: Euphrasia collina subsp. diversicolor reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leptorynchus squamatus replace: Leptorhynchos squamatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oreomyrrhis eriopoda (pinnae) replace: Oreomyrrhis eriopoda reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oreomyrrhis pulvinifica (pinnae) replace: Oreomyrrhis pulvinifica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio pinnatifolius var. pleicephalus replace: Senecio pinnatifolius var. pleiocephalus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas exclude_observations: .na questions: .na diff --git a/data/Vesk_2004/metadata.yml b/data/Vesk_2004/metadata.yml index 30a93725e..367d630dc 100644 --- a/data/Vesk_2004/metadata.yml +++ b/data/Vesk_2004/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site = ifelse(site=="Round Hill","Round Hill Camp",site)) + custom_R_code: data %>% mutate(site = ifelse(site=="Round Hill","Round Hill Camp",site)) %>% mutate(site = ifelse(site=="Condobolin","Booberoi",site)) collection_date: 1999/2001 taxon_name: species @@ -295,22 +295,22 @@ taxonomic_updates: replace: Chenopodium desertorum subsp. microphyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa angustissima replace: Dodonaea viscosa subsp. angustissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: Data for basal area, ranking of resprouting ability scaled from diff --git a/data/Vesk_2007/metadata.yml b/data/Vesk_2007/metadata.yml index d95577e0c..3ac152976 100644 --- a/data/Vesk_2007/metadata.yml +++ b/data/Vesk_2007/metadata.yml @@ -16,7 +16,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Site = stringr::str_replace(Site,"Basalt Hill bogs","Basalt Hill bog"), @@ -115,14 +115,14 @@ taxonomic_updates: - find: Acaena novae-zealandiae replace: Acaena novae-zelandiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachysome nivalis replace: Brachyscome nivalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago europhylla replace: Plantago euryphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Vesk_2019/metadata.yml b/data/Vesk_2019/metadata.yml index 6ac2f4cd1..009415af8 100644 --- a/data/Vesk_2019/metadata.yml +++ b/data/Vesk_2019/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site_name = "Round Hill-Nombinnie Nature Reserve") ' diff --git a/data/Vlasveld_2018/metadata.yml b/data/Vlasveld_2018/metadata.yml index ad4ffc369..ace46aadb 100644 --- a/data/Vlasveld_2018/metadata.yml +++ b/data/Vlasveld_2018/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% rename(life_stage = plant_age) %>% mutate( @@ -147,41 +147,41 @@ taxonomic_updates: replace: Eucalyptus x beyeri reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus eudesmioides ssp. pallida replace: Eucalyptus eudesmioides subsp. pallida (D.F.Blaxell 1981, et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus eudesmioides ssp. selachiana replace: Eucalyptus eudesmioides subsp. Selachiana (M.I.H.Brooker 8129) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus eudesmioides subsp. Pallida replace: Eucalyptus eudesmioides subsp. pallida (D.F.Blaxell 1981, et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus eudesmioides subsp. Selachiana replace: Eucalyptus eudesmioides subsp. Selachiana (M.I.H.Brooker 8129) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus ophina replace: Eucalyptus sp. [Eucalyptus ophina; Vlasveld_2018] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus ovata ssp. ovata replace: Eucalyptus ovata var. ovata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sp. Dorsiventralis replace: Eucalyptus dorsiventralis MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/WAH_1998/metadata.yml b/data/WAH_1998/metadata.yml index 21d592605..bb60aa2d2 100644 --- a/data/WAH_1998/metadata.yml +++ b/data/WAH_1998/metadata.yml @@ -60,7 +60,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(flowering_time = sprintf("%s-%s", `flowering start (month)`, `flowering finish (month)`) %>% convert_month_range_vec_to_binary()) %>% mutate(flowering_time2 = format_flowering_months(`flowering start (month)`, `flowering finish (month)`)) %>% @@ -230,389 +230,389 @@ taxonomic_updates: replace: Acianthus huegelii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acianthus tenuissimus ( Cyrtostylis tenuissima (Nicholls & Goadby) D.L.Jones & M.A.Clem.) replace: Acianthus tenuissimus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos velutinus (Adenanthos velutinus Meisn.) replace: Adenanthos velutinus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina eriochlamys ( Allocasuarina eriochlamys (L.A.S.Johnson) L.A.S.Johnson ) replace: Allocasuarina eriochlamys reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema eburna (Amyema eburna (Barlow) Barlow ) replace: Amyema eburna reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Angianthus brachypappus (Angianthus conocephalus (J.M.Black) ) replace: Angianthus brachypappus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aponogeton elongatus (Aponogeton euryspermus ) replace: Aponogeton elongatus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blumea mollis ( Blumea axillaris (Lam.) DC. ) replace: Blumea mollis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia spathulata (Boronia anceps Paul G.Wilson) replace: Boronia spathulata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Caladenia amplexans (Cyanicula amplexans (A.S.George) Hopper & A.P.Br. ) replace: Caladenia amplexans reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia aphylla (Praecoxanthus aphyllus (Benth.) Hopper & A.P.Br. ) replace: Caladenia aphylla reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: 'Caladenia deformis (Cyanicula deformis (R.Br.) Hopper & A.P.Br. ) more recently: Pheladenia deformis (R.Br.) D.L.Jones & M.A.Clem.' replace: Caladenia deformis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia eminens (Caladenia longicauda subsp. eminens (Domin) Hopper & A.P.Br.) replace: Caladenia eminens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia ericksoniae replace: Caladenia ericksonae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia gemmata (Cyanicula gemmata (Lindl.) Hopper & A.P.Br. ) replace: Caladenia gemmata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia ixioides (Cyanicula ixioides (Lindl.) Hopper & A.P.Br. subsp. ixioides ) replace: Caladenia ixioides reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia menziesii (Leptoceras menziesii (R.Br.) Lindl. ) replace: Caladenia menziesii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia pulchra (Caladenia pulchra Hopper & A.P.Br. ) replace: Caladenia pulchra reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sericea (Cyanicula sericea (Lindl.) Hopper & A.P.Br. ) replace: Caladenia sericea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia triangularis replace: Caladenia x triangularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia variegata (Caladenia occidentalis Hopper & A.P.Br.) replace: Caladenia variegata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caleana nigrita (Paracaleana nigrita (Lindl.) Blaxell ) replace: Caleana nigrita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheiranthera simplicifolia (Cheiranthera simplicifolia (E.M.Benn.) L.Cayzer & Crisp ) replace: Cheiranthera simplicifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum sigmoideum (Conospermum sigmoideum E.M.Benn. ) replace: Conospermum sigmoideum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conospermum undulatum (Conospermum undulatum Lindl.) replace: Conospermum undulatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crassula tetramera (Crassula tetramera (Toelken) A.Druce & Sykes ) replace: Crassula tetramera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra intermedia (Cryptandra intermedia (Rye) Rye ) replace: Cryptandra intermedia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyanicula deformis (Pheladenia deformis (R.Br.) D.L.Jones & M.A.Clem. ) replace: Cyanicula deformis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus rigidellus (Cyperus rigidellus (Benth.) J.M.Black ) replace: Cyperus rigidellus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dendrobium dicuphum (Dendrobium affine (Decne.) Steud.) replace: Dendrobium dicuphum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Dicliptera glabra (Dicliptera armata F.Muell) replace: Dicliptera glabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drakaea fitzgeraldii (Drakaea livida J.Drumm. ) replace: Drakaea fitzgeraldii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elythranthera intermedia replace: Elythranthera x intermedia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia macgillivrayi (Euphorbia bifida Hook. & Arn. ) replace: Euphorbia macgillivrayi reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis quinquangularis (Fimbristylis miliacea Vahl) replace: Fimbristylis quinquangularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis squarrulosa (Abildgaardia schoenoides R.Br.) replace: Fimbristylis squarrulosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea dolichopoda (Grevillea dolichopoda (McGill.) Olde & Marriott) replace: Grevillea dolichopoda reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea shuttleworthiana ( Grevillea shuttleworthiana Meisn. ) replace: Grevillea shuttleworthiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Heliotropium discorde replace: Heliotropium discors reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia pimelifolia replace: Hemigenia pimeleifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia ulicifolia (Hibbertia ulicifolia (Benth.) J.R.Wheeler ) replace: Hibbertia ulicifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus vitifolius (Fioria vitifolia (L.) Mattei ) replace: Hibiscus vitifolius subsp. vitifolius reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Isolepis nodosa (Ficinia nodosa (Rottb.) Goetgh., Muasya & D.A.Simpson ) replace: Isolepis nodosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jacquemontia browniana (Jacquemontia pannosa (R.Br.) Mabb. ) replace: Jacquemontia browniana var. browniana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lemna minor (Lemna disperma Hegelm) replace: Lemna minor reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium leptopetalum (Lepidium platypetalum Hewson) replace: Lepidium leptopetalum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptoceras fimbriata ( Leporella fimbriata (Lindl.) A.S.George ) replace: Leptoceras fimbriata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon corifolius ( Leucopogon reflexus R.Br. ) replace: Leucopogon corifolius reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lyperanthus forrestii (Pyrorchis forrestii (F.Muell.) D.L.Jones & M.A.Clem.) replace: Lyperanthus forrestii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lyperanthus nigricans (Pyrorchis nigricans (R.Br.) D.L.Jones & M.A.Clem.) replace: Lyperanthus nigricans reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus bicolor (Marianthus bicolor (Putt.) F.Muell. ) replace: Marianthus bicolor reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microtis densiflora (Microtis media subsp. densiflora (Benth.) R.J.Bates) replace: Microtis densiflora reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandorea doratoxylon (Pandorea pandorana (Andrews) Steenis ) replace: Pandorea doratoxylon reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus ciccoides (Phyllanthus reticulatus Poir. ) replace: Phyllanthus ciccoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus minutiflorus (Phyllanthus virgatus G.Forst. ) replace: Phyllanthus minutiflorus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Phyllanthus trachygyne (Phyllanthus virgatus G.Forst. ) replace: Phyllanthus trachygyne reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pileanthus rubronitidus replace: Pileanthus rubrinitidus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum grimwadeanum (Prasophyllum giganteum Lindl.) replace: Prasophyllum grimwadeanum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum lanceolatum (Prasophyllum triangulare Fitzg.) replace: Prasophyllum lanceolatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum ringens (Prasophyllum gracile Lindl. ) replace: Prasophyllum ringens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus caespitulosus (presumed extinct) replace: Ptilotus caespitulosus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus tenellus (Schoenus tenellus Benth. ) replace: Schoenus tenellus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scirpus mucronatus (Schoenoplectus mucronatus (L.) A.Kern.) replace: Scirpus mucronatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio picridioides ( Senecio picridioides (Turcz.) M.E.Lawr) replace: Senecio picridioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida corrugata (Sida spodochroma F.Muell. ) replace: Sida corrugata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia georgei (Stackhousia monogyna Labill.) replace: Stackhousia georgei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium ciliatum (Stylidium cilium Lowrie, A.H.Burb. & Kenneally ) replace: Stylidium ciliatum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stylidium perizostera replace: Stylidium perizoster reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium planirosulum replace: Stylidium planirosula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sidjamesii (Stylidium inundatum R.Br. ) replace: Stylidium sidjamesii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia volucris (Terminalia volucris Benth. ) replace: Terminalia volucris reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Thysanotus tuberosus (Thysanotus banksii R.Br.) replace: Thysanotus tuberosus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna mungo (Vigna radiata (L.) Wilczek) replace: Vigna mungo reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/WAH_2016/metadata.yml b/data/WAH_2016/metadata.yml index c21f07c56..ec98ccf05 100644 --- a/data/WAH_2016/metadata.yml +++ b/data/WAH_2016/metadata.yml @@ -5,7 +5,7 @@ source: author: '{Western Australian Herbarium}' year: 2016 title: Florabase—the Western Australian Flora. - publisher: Department of Biodiversity, Conservation and Attractions. + publisher: Department of Biodiversity, Conservation and Attractions. url: https://florabase.dpaw.wa.gov.au/ secondary: key: Paczkowska_2000 diff --git a/data/WAH_2022_1/metadata.yml b/data/WAH_2022_1/metadata.yml index 83291eade..7f033b762 100644 --- a/data/WAH_2022_1/metadata.yml +++ b/data/WAH_2022_1/metadata.yml @@ -4,8 +4,8 @@ source: bibtype: Online year: 2022 author: '{Western Australian Herbarium}' - title: Florabase—the Western Australian Flora. - publisher: Department of Biodiversity, Conservation and Attractions. + title: Florabase—the Western Australian Flora. + publisher: Department of Biodiversity, Conservation and Attractions. url: https://florabase.dpaw.wa.gov.au/ note: accessed on 14 September, 2022. contributors: @@ -56,7 +56,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) ' @@ -99,7 +99,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: woodiness_a unit_in: .na @@ -109,7 +109,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: plant_growth_form_a unit_in: .na @@ -119,7 +119,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: stem_growth_habit_a unit_in: .na @@ -129,7 +129,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: parasitic_a unit_in: .na @@ -139,7 +139,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: plant_growth_substrate_a unit_in: .na @@ -149,7 +149,7 @@ traits: basis_of_value: expert_score replicates: .na methods: This dataset is sourced from the longer taxon profiles on the Florabase - online website (version date 2022-09-14). Trait values were extracted through + online website (version date 2022-09-14). Trait values were extracted through algorithms described under the dataset's sampling strategy. - var_in: sex_type_a unit_in: .na @@ -166,1060 +166,1062 @@ taxonomic_updates: - find: Abutilon sp. Cape Range (A.S. George 1312) replace: Abutilon sp. Cape Range (A.S.George 1312) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Dioicum (A.A. Mitchell PRP 1618) replace: Abutilon sp. Dioicum (A.A.Mitchell PRP 1618) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Hamelin (A.M. Ashby 2196) replace: Abutilon sp. Hamelin (A.M.Ashby 2196) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F. Smith s.n. 10/9/61) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Pilbara (W.R. Barker 2025) replace: Abutilon sp. Pilbara (W.R.Barker 2025) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Quobba (H. Demarz 3858) replace: Abutilon sp. Quobba (H.Demarz 3858) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Warburton (A.S. George 8164) replace: Abutilon sp. Warburton (A.S.George 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia drummondii subsp. elegans Porongurup variant replace: Acacia drummondii subsp. elegans Porongurup variant (R.J.Cumming 938) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia eremophila var. Numerous-nerved variant replace: Acacia eremophila var. Numerous-nerved variant (A.S.George 11924) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. bracteolata long peduncle variant replace: Acacia lasiocarpa var. bracteolata Long Peduncle variant (G.J.Keighery 5026) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant replace: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant (E.A.Griffin 2039) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lateriticola var. Glabrous variant replace: Acacia lateriticola var. Glabrous variant (B.R.Maslin 6765) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia leioderma var. Fitzgerald River N.P. variant replace: Acacia leioderma var. Fitzgerald River N.P. variant (A.S.George 9922) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mutabilis subsp. Young River replace: Acacia mutabilis subsp. Young River (G.F.Craig 2052) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia pulchella var. reflexa acuminate bracteole variant replace: Acacia pulchella var. reflexa Acuminate bracteole variant (R.J.Cumming 882) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia sp. Barklys (J.L. Egan 124) replace: Acacia sp. Barklys (J.L.Egan 124) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Broome (B.R. Maslin 4918) replace: Acacia sp. Broome (B.R.Maslin 4918) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Bungalbin Hill (J.J. Alford 1119) replace: Acacia sp. Bungalbin Hill (J.J.Alford 1119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R.Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R. Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S.Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S. Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Carson River (M. McDonald MM1890) replace: Acacia sp. Carson River (M.McDonald MM1890) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cockburn Range (R. Pullen 10.763) replace: Acacia sp. Cockburn Range (R.Pullen 10.763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Edgar Range (S.D. Hopper 1763) replace: Acacia sp. Edgar Range (S.D.Hopper 1763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Esperance (M.A. Burgman 1833b) replace: Acacia sp. Esperance (M.A.Burgman 1833b) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. F Kimberley Flora (J.J. Alford 557) replace: Acacia sp. F Kimberley Flora (J.J.Alford 557) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Goodlands (B.R. Maslin 7761) replace: Acacia sp. Goodlands (B.R.Maslin 7761) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Jimblebar (S. van Leeuwen 1342) replace: Acacia sp. Jimblebar (S.van Leeuwen 1342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7571) replace: Acacia sp. Kalannie (B.R.Maslin 7571) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7706) replace: Acacia sp. Kalannie (B.R.Maslin 7706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North (B.R. Maslin 7702) replace: Acacia sp. Kalannie North (B.R.Maslin 7702) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North East (B.R. Maslin 7519) replace: Acacia sp. Kalannie North East (B.R.Maslin 7519) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kulin (S. Murray 504) replace: Acacia sp. Kulin (S.Murray 504) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kununurra (Lullfitz 6195) replace: Acacia sp. Kununurra (G.Lullfitz 6195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake King (R. Hnatiuk 760791) replace: Acacia sp. Lake King (R.Hnatiuk 760791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Little Sandy Desert (A.S. Mitchell 591) replace: Acacia sp. Little Sandy Desert (A.S.Mitchell 591) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Manmanning (B.R. Maslin 7711) replace: Acacia sp. Manmanning (B.R.Maslin 7711) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Marble Bar (J.G. & M.H. Simmons 3499) replace: Acacia sp. Marble Bar (J.G. & M.H.Simmons 3499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Minnie Creek (B.R. Maslin 5217) replace: Acacia sp. Minnie Creek (B.R.Maslin 5217) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Moorine Rock (B.R. Maslin 4474) replace: Acacia sp. Moorine Rock (B.R.Maslin 4474) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Augustus (S.D. Hopper 3181) replace: Acacia sp. Mt Augustus (S.D.Hopper 3181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Jackson (B. Ryan 176) - replace: Acacia sp. Mt Jackson (B.Ryan 176) WA Herbarium - reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + replace: Acacia sp. Mt Jackson (B.Ryan 176) WA Herbarium + reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, + 2023-06-16) + taxonomic_resolution: species - find: Acacia sp. Muggon Station (S. Patrick & D. Edinger SP 3235) replace: Acacia sp. Muggon Station (S.Patrick & D.Edinger SP3235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mullewa (B.R. Maslin 4269) replace: Acacia sp. Mullewa (B.R.Maslin 4269) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) - replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. New Norcia (E.A. Griffin 5917) replace: Acacia sp. New Norcia (E.A.Griffin 5917) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Norseman (B. Archer 1554) replace: Acacia sp. Norseman (B.Archer 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Nullagine (B.R. Maslin 4955) replace: Acacia sp. Nullagine (B.R.Maslin 4955) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P174 (J.M. Brown 228) replace: Acacia sp. P174 (J.M.Brown 228) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P176 (B.R. Maslin 5831) replace: Acacia sp. P176 (B.R.Maslin 5831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P19 (A.A. Mitchell 231) replace: Acacia sp. P19 (A.A.Mitchell 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P69 (W.E. Blackall 3754) replace: Acacia sp. P69 (W.E.Blackall 3754) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P94 (J.S. Beard 6178) replace: Acacia sp. P94 (J.S.Beard 6178) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Peak Hill (R. Gibson 0003) replace: Acacia sp. Peak Hill (R.Gibson 0003) - reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, 2023-06-16) - taxonomic_resolution: Species + reason: Manual alignment with correct syntax, although not accepted name (E. Wenk, + 2023-06-16) + taxonomic_resolution: species - find: Acacia sp. Petrudor Rocks (B.R. Maslin 7714) replace: Acacia sp. Petrudor Rocks (B.R.Maslin 7714) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe (R.S. Cowan & B.R. Maslin RSC A-760) replace: Acacia sp. Ravensthorpe (R.S.Cowan & B.R.Maslin RSC A-760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe Range (B.R. Maslin 5463) replace: Acacia sp. Ravensthorpe Range (B.R.Maslin 5463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Riddell Beach (T. Willing 71) replace: Acacia sp. Riddell Beach (T.Willing 71) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Rudall River (B.R. Maslin 2237) replace: Acacia sp. Rudall River (B.R.Maslin 2237) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Shark Bay (B.R. Maslin 3682) replace: Acacia sp. Shark Bay (B.R.Maslin 3682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. small seed (B.R. Maslin 7830) - replace: Acacia sp. Small seed (B.R.Maslin 7830) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Trent River (K.F. Kenneally 11701) - replace: Acacia sp. Trent River (K.F.Kenneally 11701) + replace: Acacia sp. Trent River (K.F.Kenneally 11701) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Weld Range (A. Markey & S. Dillon 2994) replace: Acacia sp. Weld Range (A.Markey & S.Dillon 2994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wiluna (B.R. Maslin 7090) replace: Acacia sp. Wiluna (B.R.Maslin 7090) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Windy Corner (P.K. Latz 17865) replace: Acacia sp. Windy Corner (P.K.Latz 17865) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wren Creek Crossing (K.F. Kenneally 11853) replace: Acacia sp. Wren Creek Crossing (K.F.Kenneally 11853) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) + replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Acacia sp. small seed (B.R. Maslin 7830) + replace: Acacia sp. Small seed (B.R.Maslin 7830) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. A Kimberley Flora (C.R. Dunlop 5303) replace: Actinoschoenus sp. A Kimberley Flora (C.R.Dunlop 5303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. B Kimberley Flora (G.J. Keighery 2649) replace: Actinoschoenus sp. B Kimberley Flora (G.J.Keighery 2649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. C Kimberley Flora (P.G. Wilson s.n. 12/5/72) replace: Actinoschoenus sp. C Kimberley Flora (P.G.Wilson s.n. 12/5/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. D Kimberley Flora (K.F. Kenneally 4789) replace: Actinoschoenus sp. D Kimberley Flora (K.F.Kenneally 4789) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. E Kimberley Flora (C.R. Dunlop 5309) replace: Actinoschoenus sp. E Kimberley Flora (C.R.Dunlop 5309) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Comet Vale (A.V. Milewski AVM 1093) replace: Actinotus sp. Comet Vale (A.V.Milewski AVM1093) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Walpole (J.R. Wheeler 3786) replace: Actinotus sp. Walpole (J.R.Wheeler 3786) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angulata replace: Alyogyne angulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angustiloba replace: Alyogyne angustiloba MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne coronopifolia replace: Alyogyne coronopifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne pyrrhophila replace: Alyogyne pyrrhophila MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Geraldton (R. Davis 3487) replace: Alyogyne sp. Geraldton (R.Davis 3487) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Great Victoria Desert (D.J. Edinger 6212) replace: Alyogyne sp. Great Victoria Desert (D.J.Edinger 6212) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hutt River (B.J. Lepschi & T.R. Lally 2310) replace: Alyogyne sp. Hutt River (B.J.Lepschi & T.R.Lally 2310) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S. Durell GD 127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S.Durrell GD127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Rockingham (G.J. Keighery 14463) replace: Alyogyne sp. Rockingham (G.J.Keighery 14463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne wrayae replace: Alyogyne wrayae MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus sp. A Kimberley Flora (C.A. Gardner s.n. PERTH 00326518) replace: Amaranthus sp. A Kimberley Flora (C.A.Gardner s.n. PERTH 00326518) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. Fortescue (M.E. Trudgen 5358) replace: Amyema sp. Fortescue (M.E.Trudgen 5358) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anacampseros sp. Eremaean (F. Hort, J. Hort & J. Shanks 3248) replace: Anacampseros sp. Eremaean (F.Hort, J.Hort & J.Shanks 3248) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia caerulea subsp. caerulea replace: Andersonia caerulea var. caerulea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Andersonia fallax replace: Andersonia fallax MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia jamesii replace: Andersonia jamesii MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Frankland (W. Jackson BJ8) replace: Andersonia sp. Frankland (W.Jackson BJ8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Lower King (N. Hoyle 1500) replace: Andersonia sp. Lower King (N.Hoyle 1500) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Mitchell River (B.G. Hammersley 925) replace: Andersonia sp. Mitchell River (B.G.Hammersley 925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthocercis sp. Shark Bay (T.E.H. Aplin 3335) replace: Anthocercis sp. Shark Bay (T.E.H.Aplin 3335) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Darling Range (F. Hort & B. Hort 2431) replace: Anthotium sp. Darling Range (F.Hort & B.Hort 2431) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Peaceful Bay (J.R. Wheeler 3772 & S.J. Patrick) replace: Anthotium sp. Peaceful Bay (J.R.Wheeler 3772 & S.J.Patrick) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Cunderdin (B.J. Lepschi et al. 3587) replace: Aotus sp. Cunderdin (B.J.Lepschi et al. 3587) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Dundas (M.A. Burgman 2835) replace: Aotus sp. Dundas (M.A.Burgman 2835) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. big bracteoles (A.R. Annels 995) - replace: Astartea sp. big bracteoles (A.R.Annels 995) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Bungalbin Hill (K.R. Newbey 8989) replace: Astartea sp. Bungalbin Hill (K.R.Newbey 8989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Esperance (A. Fairall 2431) replace: Astartea sp. Esperance (A.Fairall 2431) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Fitzgerald (K.R. Newbey 10844) replace: Astartea sp. Fitzgerald (K.R.Newbey 10844) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Gingalup (N. Gibson & M. Lyons 119) replace: Astartea sp. Gingalup (N.Gibson & M.Lyons 119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Hopetoun area (A.S. George 10594) replace: Astartea sp. Hopetoun area (A.S.George 10594) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jerdacuttup (A. Strid 21898) replace: Astartea sp. Jerdacuttup (A.Strid 21898) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jyndabinbin Rocks (K.R. Newbey 7689) replace: Astartea sp. Jyndabinbin Rocks (K.R.Newbey 7689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. long stalks (D. Foreman 1490) - replace: Astartea sp. long stalks (D.Foreman 1490) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Dimer (C. McChesney TRL4/72) replace: Astartea sp. Mt Dimer (C.McChesney TRL4/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Johnston (A.R. Annels 5645) replace: Astartea sp. Mt Johnston (A.R.Annels 5645) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Red Hill (K.R. Newbey 8462) replace: Astartea sp. Red Hill (K.R.Newbey 8462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Scott River (D. Backshall 88233) replace: Astartea sp. Scott River (D.Backshall 88233) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astartea sp. big bracteoles (A.R. Annels 995) + replace: Astartea sp. big bracteoles (A.R.Annels 995) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Astartea sp. long stalks (D. Foreman 1490) + replace: Astartea sp. long stalks (D.Foreman 1490) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Asterolasia sp. Kalgan River (S. Barrett 1522) replace: Asterolasia sp. Kalgan River (S.Barrett 1522) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Cataby (E.A. Griffin 1022) replace: Astroloma sp. Cataby (E.A.Griffin 1022) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Grass Patch (A.J.G. Wilson 110) replace: Astroloma sp. Grass Patch (A.J.G.Wilson 110) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Nannup (R.D. Royce 3978) replace: Astroloma sp. Nannup (R.D.Royce 3978) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astroloma sp. sessile leaf (J.L. Robson 657) - replace: Astroloma sp. sessile leaf (J.L.Robson 657) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Tutanning (A.S. George 7779) replace: Astroloma sp. Tutanning (A.S.George 7779) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astroloma sp. sessile leaf (J.L. Robson 657) + replace: Astroloma sp. sessile leaf (J.L.Robson 657) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Atriplex sp. De Grey (A.A. Mitchell PRP1940) replace: Atriplex sp. De Grey (A.A.Mitchell PRP1940) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos erubescens replace: Austrodolichos erubescens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Baladjie (P.J. Spencer 24) replace: Baeckea sp. Baladjie (P.J.Spencer 24) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bencubbin-Koorda (M.E. Trudgen 5421) replace: Baeckea sp. Bencubbin-Koorda (M.E.Trudgen 5421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Beringbooding (A.R. Main 11/9/1957) replace: Baeckea sp. Beringbooding (A.R.Main 11/9/1957) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Billeranga Hills (M.E. Trudgen 2206) replace: Baeckea sp. Billeranga Hills (M.E.Trudgen 2206) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bulla Bulling (D.J.E. Whibley 4648) replace: Baeckea sp. Bulla Bulling (D.J.E.Whibley 4648) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bungalbin Hill (B.J. Lepschi & L.A. Craven 4586) replace: Baeckea sp. Bungalbin Hill (B.J.Lepschi & L.A.Craven 4586) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunjil (B.R. Maslin 5067) replace: Baeckea sp. Bunjil (B.R.Maslin 5067) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunney Road (S. Patrick 4059) replace: Baeckea sp. Bunney Road (S.Patrick 4059) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Calingiri (F. Hort 1710) replace: Baeckea sp. Calingiri (F.Hort 1710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Chittering (R.J. Cranfield 1983) replace: Baeckea sp. Chittering (R.J.Cranfield 1983) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Darling Range (R.J. Cranfield 1673) replace: Baeckea sp. Darling Range (R.J.Cranfield 1673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Die Hardy Range (E. Mattiske J91) replace: Baeckea sp. Die Hardy Range (E.Mattiske J91) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. East Yuna (R. Spjut & C. Edson 7077) replace: Baeckea sp. East Yuna (R.Spjut & C.Edson 7077) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Elsewhere Road (M.E. Trudgen 5420) replace: Baeckea sp. Elsewhere Road (M.E.Trudgen 5420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Eujinyn (J. Buegge D 99) replace: Baeckea sp. Eujinyn (J.Buegge D99) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Exclamation Lake (M.E. Trudgen 1524) replace: Baeckea sp. Exclamation Lake (M.E.Trudgen 1524) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Forrestania (K.R. Newbey 1105) replace: Baeckea sp. Forrestania (K.R.Newbey 1105) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Gibson (K.R. Newbey 11084) replace: Baeckea sp. Gibson (K.R.Newbey 11084) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Great Victoria Desert (A.S. Weston 14813) replace: Baeckea sp. Great Victoria Desert (A.S.Weston 14813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hatter Hill (K.R. Newbey 3284) replace: Baeckea sp. Hatter Hill (K.R.Newbey 3284) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena & Aurora Range (G.J.Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena and Aurora Range (G.J. Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hyden (J.M. Brown 141) replace: Baeckea sp. Hyden (J.M.Brown 141) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Jaurdi Station (L.W. Sage & F. Hort 2229) replace: Baeckea sp. Jaurdi Station (L.W.Sage & F.Hort 2229) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Koorda (W.E. Blackall 3371) replace: Baeckea sp. Koorda (W.E.Blackall 3371) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Lake Cronin (K.R. Newbey 9191) replace: Baeckea sp. Lake Cronin (K.R.Newbey 9191) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. London Bridge (M.E. Trudgen 5393) replace: Baeckea sp. London Bridge (M.E.Trudgen 5393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Melita Station (H. Pringle 2738) replace: Baeckea sp. Melita Station (H.Pringle 2738) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Merredin (K.R. Newbey 2506) replace: Baeckea sp. Merredin (K.R.Newbey 2506) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mingenew (M.E. Trudgen 12029) replace: Baeckea sp. Mingenew (M.E.Trudgen 12029) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Moora (R. Bone 1993/1) replace: Baeckea sp. Moora (R.Bone 1993/1) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Morawa (M.A. Langley MAL4177) replace: Baeckea sp. Morawa (M.A.Langley MAL4177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mount Barloweerie (J.Z. Weber 5079) replace: Baeckea sp. Mount Barloweerie (J.Z.Weber 5079) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mt Glasse (P.G. Wilson 5717) replace: Baeckea sp. Mt Glasse (P.G.Wilson 5717) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Muntadgin (E.T. Bailey 231) replace: Baeckea sp. Muntadgin (E.T.Bailey 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Murchison River (M.E. Trudgen 12009) replace: Baeckea sp. Murchison River (M.E.Trudgen 12009) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nanga (A.S. George 11346) replace: Baeckea sp. Nanga (A.S.George 11346) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narembeen (G.J. Keighery & N. Gibson 3010) replace: Baeckea sp. Narembeen (G.J.Keighery & N.Gibson 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narrogin (R. Hnatiuk 780011) replace: Baeckea sp. Narrogin (R.Hnatiuk 780011) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nolba (M.E. Trudgen MET21632) replace: Baeckea sp. Nolba (M.E.Trudgen MET21632) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. North Ironcap (R.J. Cranfield 10580) replace: Baeckea sp. North Ironcap (R.J.Cranfield 10580) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Parker Range (M. Hislop & F. Hort MH 2968) replace: Baeckea sp. Parker Range (M.Hislop & F.Hort MH 2968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Paynes Find (S. Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Payne's Find (S.Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Payne's Find (S.Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Paynes Find (S. Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perenjori (J.W. Green 1516) replace: Baeckea sp. Perenjori (J.W.Green 1516) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perth Region (R.J. Cranfield 444) replace: Baeckea sp. Perth Region (R.J.Cranfield 444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Pigeon Rocks (D. Grace DJP 281) replace: Baeckea sp. Pigeon Rocks (D.Grace DJP 281) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A. Gardner s.n. 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A.Gardner s.n., 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sheoaks Rocks (M.E. Trudgen MET5452) replace: Baeckea sp. Sheoaks Rocks (M.E.Trudgen MET5452) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Stockton Road (M.E. Trudgen MET22077 & B. Rye) replace: Baeckea sp. Stockton Road (M.E.Trudgen MET22077 & B.Rye) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Tammin (R. Coveny 8319 & B. Habberley) replace: Baeckea sp. Tammin (R.Coveny 8319 & B.Habberley) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Three Springs (M.E. Trudgen 5368) replace: Baeckea sp. Three Springs (M.E.Trudgen 5368) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Walkaway (A.S. George 11249) replace: Baeckea sp. Walkaway (A.S.George 11249) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Western Australia (J. Drummond s.n.) replace: Baeckea sp. Western Australia (J.Drummond s.n.) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Whelarra (A.C. Burns 7) replace: Baeckea sp. Whelarra (A.C.Burns 7) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wialki (G.M. Storr s.n. 4/10/1958) replace: Baeckea sp. Wiakli (G.M.Storr s.n. 4/10/1958) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wubin (M.E. Trudgen 5404) replace: Baeckea sp. Wubin (M.E.Trudgen 5404) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yacke Yackine Dam (K.R. Newbey 9195) replace: Baeckea sp. Yacke Yackine Dam (K.R.Newbey 9195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Youndegin Hill (A.S. George 15772) replace: Baeckea sp. Youndegin Hill (A.S.George 15772) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yuna (M.E. Trudgen 2224) replace: Baeckea sp. Yuna (M.E.Trudgen 2224) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia dallanneyi subsp. dallanneyi var. dallanneyi replace: Banksia dallanneyi subsp. dallanneyi reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia dallanneyi subsp. dallanneyi var. mellicula replace: Banksia dallanneyi var. mellicula reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia nivea subsp. Morangup replace: Banksia nivea subsp. Morangup (M.Pieroni 9/42) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia sp. Boyup Brook (L.W. Sage LWS 2366) replace: Banksia sp. Boyup Brook (L.W.Sage LWS 2366) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea preissii subsp. laxa replace: Baumea preissii subsp. laxa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Beaufortia sp. column (J.S. Beard 8119) replace: Beaufortia sp. Column (J.S.Beard 8119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. A Ravensthorpe (A.S. George 9474) replace: Beyeria sp. A Ravensthorpe (A.S.George 9474) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Bandalup Hill (G. Cockerton 7553) replace: Beyeria sp. Bandalup Hill (G.Cockerton 7553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Jackson Range (R. Cranfield & P. Spencer 7751) replace: Beyeria sp. Jackson Range (R.Cranfield & P.Spencer 7751) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Murchison (B. Jeanes s.n. 7/7/2005) replace: Beyeria sp. Murchison (B.Jeanes s.n. 7/7/2005) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Boronia crenulata subsp. crenulata var. angustifolia - replace: Boronia crenulata var. angustifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Boronia crenulata subsp. Shark Bay replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Boronia crenulata subsp. crenulata var. angustifolia + replace: Boronia crenulata var. angustifolia + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: varietas - find: Boronia sp. Leeuwin (J. Scott 235) replace: Boronia sp. Leeuwin (J.Scott 235) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp. Location 4264 (R. Turner s.n.) replace: Boronia sp. Location 4264 (R.Turner s.n., 23 Sept. 1999) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borya sp. Wheatbelt (A.S. George 16470) replace: Borya sp. Wheatbelt (A.S.George 16470) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Bremer (K. Newbey 2980) replace: Bossiaea sp. Bremer (K.Newbey 2980) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Frankland (E.M. Sandiford EMS 896) replace: Bossiaea sp. Frankland (E.M.Sandiford EMS 896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Jackson Range (G. Cockerton & S. McNee LCS 13614) replace: Bossiaea sp. Jackson Range (G.Cockerton & S.McNee LCS 13614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Waroona (B.J. Keighery & N. Gibson 229) replace: Bossiaea sp. Waroona (B.J.Keighery & N.Gibson 229) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Long hairs (D.E. Symon 2440) replace: Brunonia sp. Long Hairs (D.E.Symon 2440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunoniella acaulis var. acaulis replace: Brunoniella acaulis subsp. acaulis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caesia sp. Wongan (K.F. Kenneally 8820) replace: Caesia sp. Wongan (K.F.Kenneally 8820) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Muddarning Hill (S.D. Hopper 4013) replace: Caladenia sp. Muddarning Hill (S.D.Hopper 4013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Wyalkatchem (G.B. Brockman GBB 661) replace: Caladenia sp. Wyalkatchem (G.B.Brockman GBB 661) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xaestantha replace: Caladenia x aestantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcala replace: Caladenia x cala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcoactescens replace: Caladenia x coactescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xeludens replace: Caladenia x eludens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xenigma replace: Caladenia x enigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xericksoniae replace: Caladenia x ericksoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xerminea replace: Caladenia x erminea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexoleta replace: Caladenia x exoleta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexserta replace: Caladenia x exserta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xhypata replace: Caladenia x hypata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xidiastes replace: Caladenia x idiastes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xlavandulacea replace: Caladenia x lavandulacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xornata replace: Caladenia x ornata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xresupina replace: Caladenia x resupina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xspectabilis replace: Caladenia x spectabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xsuffusa replace: Caladenia x suffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtriangularis replace: Caladenia x triangularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtryphera replace: Caladenia x tryphera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Bungalbin (G.J. Keighery & N. Gibson 1656) replace: Calandrinia sp. Bungalbin (G.J.Keighery & N.Gibson 1656) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Coolcalalaya (G.J. Keighery & N. Gibson 698) replace: Calandrinia sp. Coolcalalaya (G.J.Keighery & N.Gibson 698) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick (G.J. Keighery 10905) replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Needilup (K.R. Newbey 4892) replace: Calandrinia sp. Needilup (K.R.Newbey 4892) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Ongerup (K.R. Newbey 11834) replace: Calandrinia sp. Ongerup (K.R.Newbey 11834) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Piawaning (A.C. Beauglehole 12257) replace: Calandrinia sp. Piawaning (A.C.Beauglehole 12257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. The Pink Hills (F. Obbens FO 19/06) replace: Calandrinia sp. The Pink Hills (F.Obbens FO 19/06) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. Wheatbelt replace: Calectasia grandiflora (Wheatbelt variant) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia sp. Pinjar (C. Tauss 557) replace: Calectasia sp. Pinjar (C.Tauss 557) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistachys sp. south-coast variant (M. Carter 180) replace: Callistachys sp. south-coast variant (M.Carter 180) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Pilbara-Desert (M.E. Trudgen 11454) replace: Calocephalus sp. Pilbara-Desert (M.E.Trudgen 11454) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Wittenoom (A.S. George 1082) replace: Calocephalus sp. Wittenoom (A.S.George 1082) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Hopetoun (H. Taylor s.n.) replace: Calochilus sp. Hopetoun (H.Taylor s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. South-west swamps (B.G. Hammersley 1010) replace: Calochilus sp. South-west swamps (B.G.Hammersley 1010) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Wandoo Beard Orchid (D.M. Rose 344) replace: Calochilus sp. Wandoo Beard Orchid (D.M.Rose 344) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Mt Lindesay (B.G. Hammersley 439) replace: Calothamnus sp. Mt Lindesay (B.G.Hammersley 439) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Scott River (R.D. Royce 84) replace: Calothamnus sp. Scott River (R.D.Royce 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Whicher (B.J. Keighery & N. Gibson 230) replace: Calothamnus sp. Whicher (B.J.Keighery & N.Gibson 230) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. brevifolia replace: Calytrix acutifolia subsp. brevifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calytrix sp. Dragon Rocks (K. Kershaw & L. Kerrigan KK 2180) replace: Calytrix sp. Dragon Rocks (K.Kershaw & L.Kerrigan KK 2180) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Eneabba (B.J. Lepschi & T.R. Lally BJL3617) replace: Calytrix sp. Eneabba (B.J.Lepschi & T.R.Lally BJL3617) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Esperance (M.A. Burgman 4268A) replace: Calytrix sp. Esperance (M.A.Burgman 4268A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Jingaring (F. Obbens, R. Davis & L.W. Sage LWS1332) replace: Calytrix sp. Jingaring (F.Obbens, R.Davis & L.W.Sage LWS1332) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Scarp (H. Bowler 270) replace: Calytrix sp. Scarp (H.Bowler 270) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Tutunup (G.J. Keighery & N. Gibson 2953) replace: Calytrix sp. Tutunup (G.J.Keighery & N.Gibson 2953) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Wheatbelt (R. Davis 4544) replace: Calytrix sp. Wheatbelt (R.Davis 4544) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xgeneralis replace: Canna x generalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xorchiodes replace: Canna x orchiodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine sp. Jandakot (P. Luff s.n. 4/7/1969) replace: Cardamine sp. Jandakot (P.Luff s.n. 4/7/1969) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpobrotus sp. Thevenard Island (M. White 050) replace: Carpobrotus sp. Thevenard Island (M.White 050) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. A Kimberley Flora (S.J. Forbes 2163) replace: Cartonema sp. A Kimberley Flora (S.J.Forbes 2163) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. B Kimberley Flora (D.J. Edinger 336) replace: Cartonema sp. B Kimberley Flora (D.J.Edinger 336) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caulerpa scalpelliformis replace: Caulerpa sp. [Caulerpa scalpelliformis; WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -1228,19 +1230,19 @@ taxonomic_updates: - find: Caustis sp. Boyanup (G.S. McCutcheon 1706) replace: Caustis sp. Boyanup (G.S.McCutcheon 1706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. thryptomenioides replace: Chamelaucium pauciflorum subsp. thryptomenoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chamelaucium sp. Yalgoo (Y. Chadwick 1816) replace: Chamelaucium sp. Yalgoo (Y.Chadwick 1816) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon sp. Zuytdorp (G.J. Keighery & N. Gibson 906) replace: Chrysopogon sp. Zuytdorp (G.J.Keighery & N.Gibson 906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codium duthieae replace: Codium sp. [Codium duthieae; WAH_2022_1] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1249,1275 +1251,1275 @@ taxonomic_updates: - find: Comesperma sp. A Kimberley Flora (K.F. Kenneally 9242) replace: Comesperma sp. A Kimberley Flora (K.F.Kenneally 9242) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia adenothalia replace: Commersonia adenothalia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia bivillosa replace: Commersonia bivillosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Bindoon (C. Wilkins & F. & J. Hort CW 2155) replace: Commersonia sp. Bindoon (C.Wilkins & F. & J.Hort CW 2155) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Mt Groper (R. Cranfield & D. Kabay 9157) replace: Commersonia sp. Mount Groper (R.Cranfield & D.Kabay 9157) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis candicans var. xleptophylla replace: Conostylis candicans var. x leptophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Corchorus sp. Fitzroy Crossing (A.J. Ewart s.n. PERTH 01526790) replace: Corchorus sp. Fitzroy Crossing (A.J.Ewart s.n. PERTH 01526790) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Hamersley Range (S. van Leeuwen 3586) replace: Corchorus sp. Hamersley Range (S.van Leeuwen 3586) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Yarrie (J. Bull & D. Roberts CAL 01.05) - replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) + replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia candida subsp. xlautifolia replace: Corymbia candida subsp. x lautifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia xopacula replace: Corymbia x opacula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia xpedimontana replace: Corymbia x pedimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia arenicola replace: Craspedia arenicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia argillicola replace: Craspedia argillicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria sp. Chichester Tablelands (A.A. Mitchell PRP226) replace: Crotalaria sp. Chichester Tablelands (A.A.Mitchell PRP226) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis sp. Bunbury (G. Brayshaw s.n. 26/2/91) replace: Cucumis sp. Bunbury (G.Brayshaw s.n. 26/2/91) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Dowak (J.M. Fox 86/271) replace: Cyathostemon sp. Dowak (J.M.Fox 86/271) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Lake King (M.E. & M.E. Trudgen 1462) replace: Cyathostemon sp. Lake King (M.E. & M.E.Trudgen 1462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Salmon Gums (B. Archer 769) replace: Cyathostemon sp. Salmon Gums (B.Archer 769) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum sp. Hamersley (M. Trudgen 2302) replace: Cynanchum sp. Hamersley (M.Trudgen 2302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera angulata subsp. Peak Charles replace: Dampiera angulata subsp. Peak Charles (K.R.Newbey 5402) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera diversifolia de replace: Dampiera diversifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera eriocephala de replace: Dampiera eriocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de replace: Dampiera haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de subsp. haematotricha replace: Dampiera haematotricha subsp. haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera lindleyi de replace: Dampiera lindleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Central Wheatbelt (L.W. Sage, F. Hort, C.A. Hollister LWS 2321) replace: Dampiera sp. Central Wheatbelt (L.W.Sage, F.Hort, C.A.Hollister LWS2321) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Jurien (G. Lullfitz s.n. 10/7/1986) replace: Dampiera sp. Jurien (G.Lullfitz s.n. 10/7/1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Wongan Hills (R.D. Royce 6637) replace: Dampiera sp. Wongan Hills (R.D.Royce 6637) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera trigona de replace: Dampiera trigona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Carnamah (J. Coleby-Williams 148) replace: Darwinia sp. Carnamah (J.Coleby-Williams 148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Chiddarcooping (S.D. Hopper 6944) replace: Darwinia sp. Chiddarcooping (S.D.Hopper 6944) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Dryandra (G.J. Keighery 9295) replace: Darwinia sp. Dryandra (G.J.Keighery 9295) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Gibson (R.D. Royce 3569) replace: Darwinia sp. Gibson (R.D.Royce 3569) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Morawa (C.A. Gardner 2662) replace: Darwinia sp. Morawa (C.A.Gardner 2662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Baring (K.R. Newbey 9775) replace: Darwinia sp. Mt Baring (K.R.Newbey 9775) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Burdett (N.G. Marchant 80/42) replace: Darwinia sp. Mt Burdett (N.G.Marchant 80/42) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ney (M.A. Burgman & S. McNee 1274) replace: Darwinia sp. Mt Ney (M.A.Burgman & S.McNee 1274) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ragged (S. Barrett 663) replace: Darwinia sp. Mt Ragged (S.Barrett 663) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Success (G.J. Keighery 2299) replace: Darwinia sp. Mt Success (G.J.Keighery 2299) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Peak Charles (A.S. George 10627) replace: Darwinia sp. Peak Charles (A.S.George 10627) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Ravensthorpe (G.J. Keighery 8030) replace: Darwinia sp. Ravensthorpe (G.J.Keighery 8030) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Stirling Range (G.J. Keighery 5732) replace: Darwinia sp. (Stirling Range) G.J.Keighery 5732 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Thumb Peak (K.R. Newbey 4847) replace: Darwinia sp. Thumb Peak (K.R.Newbey 4847) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Westdale (F. Hort 864) replace: Darwinia sp. Westdale (F.Hort 864) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson (G.J. Keighery 12717) replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Wyalgima Hill (L.W. Sage, J.P. Pigott & E.B. Pigott LWS1549) replace: Darwinia sp. Wyalgima Hill (L.W.Sage, J.P.Pigott & E.B.Pigott LWS1549) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia thymoides subsp. bella replace: Darwinia thymoides subsp. bella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Darwinia thymoides subsp. thymoides replace: Darwinia thymoides var. thymoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. A Kimberley Flora (K.F. Kenneally 8686) replace: Dicarpidium sp. A Kimberley Flora (K.F.Kenneally 8686) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. B Kimberley Flora (G.J. Keighery 10138) replace: Dicarpidium sp. B Kimberley Flora (G.J.Keighery 10138) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Mt Leake (T. Willing 469) replace: Dicarpidium sp. Mt Leake (T.Willing 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Cue (A.A. Mitchell 764) replace: Dicrastylis sp. Cue (A.A.Mitchell 764) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Denham (M. Lewis 42/92) replace: Dicrastylis sp. Denham (M.Lewis 42/92) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Peron Peninsula (M.E. Trudgen 7373) replace: Dicrastylis sp. Peron Peninsula (M.E.Trudgen 7373) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria sp. Carson River (A.A. Mitchell 4387) replace: Digitaria sp. Carson River (A.A.Mitchell 4387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Capel (P.A. Jurjevich 1771) replace: Dillwynia sp. Capel (P.A.Jurjevich 1771) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coolgardie (V.E. Sands 637.3.1) replace: Dillwynia sp. Coolgardie (V.E.Sands 637.3.1) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coujinup Hill (M.A. Burgman 1560) replace: Dillwynia sp. Coujinup Hill (M.A.Burgman 1560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Northern Sandplains (M. Hislop 3278) replace: Dillwynia sp. Northern Sandplains (M.Hislop 3278) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Arrowsmith (K.W. Dixon 924) replace: Diuris sp. Arrowsmith (K.W.Dixon 924) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Eneabba (A.H. Burbidge 3941) replace: Diuris sp. Eneabba (A.H.Burbidge 3941) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xbadgerupii replace: Drosera x badgerupii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xsidjamesii replace: Drosera x sidjamesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita sp. Trayning (A.M. George 97) replace: Drummondita sp. Trayning (A.M.George 97) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinochloa crusgalli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. A Kimberley Flora (W.V. Fitzgerald 1038) replace: Eleocharis sp. A Kimberley Flora (W.V.Fitzgerald 1038) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. B Kimberley Flora (K.F. Kenneally 8727) replace: Eleocharis sp. B Kimberley Flora (K.F.Kenneally 8272) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elythranthera xintermedia replace: Elythranthera x intermedia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enekbatus roseus replace: Enekbatus roseus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. Mt Robinson (S. van Leeuwen 4109) replace: Eragrostis sp. Mt Robinson (S.van Leeuwen 4109) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea violacea var. violacea replace: Eremaea violacea subsp. violacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea xcodonocarpa replace: Eremaea x codonocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea xphoenicea replace: Eremaea x phoenicea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Eremophila sp. long pedicels (G. Cockerton 1975) - replace: Eremophila sp. long pedicels (G.Cockerton 1975) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Jackson (G.J. Keighery 4372) replace: Eremophila sp. Mt Jackson (G.J.Keighery 4372) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremophila sp. long pedicels (G. Cockerton 1975) + replace: Eremophila sp. long pedicels (G.Cockerton 1975) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Eriachne armitii replace: Eriachne armittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. C Kimberley Flora (G.J. Keighery 4610) replace: Eriocaulon sp. C Kimberley Flora (G.J.Keighery 4610) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. E Kimberley Flora (A.S. George 12635) replace: Eriocaulon sp. E Kimberley Flora (A.S.George 12635) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. G Kimberley Flora (K.F. Kenneally 11374E) replace: Eriocaulon sp. G Kimberley Flora (K.F.Kenneally 11374E) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium ferox replace: Eryngium ferox MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. minus replace: Eryngium pinnatifidum subsp. minus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium pinnatifidum subsp. umbraphilum replace: Eryngium pinnatifidum subsp. umbraphilum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium sp. Lake Muir (E. Wittwer 2293) replace: Eryngium sp. Lake Muir (E.Wittwer 2293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina xsykesii replace: Erythrina x sykesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus aspersa x Eucalyptus falcata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanopelex replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus buprestium x Eucalyptus erectifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x ligulata replace: Eucalyptus buprestium x Eucalyptus ligulata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus buprestium x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus falcata subsp. falcata replace: Eucalyptus falcata var. falcata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus loxophleba x Eucalyptus wandoo reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus macrocarpa x pyriformis replace: Eucalyptus macrocarpa x Eucalyptus pyriformis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x megacarpa replace: Eucalyptus marginata x Eucalyptus megacarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x pachyloma replace: Eucalyptus marginata x Eucalyptus pachyloma reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus oldfieldii subsp. Millar Range replace: Eucalyptus oldfieldii subsp. Millar Range (M.French 303) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus preissiana x staeri replace: Eucalyptus preissiana x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus rhodantha var. xpetiolaris replace: Eucalyptus rhodantha var. x petiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sargentii subsp. onesia replace: Eucalyptus sargentii subsp. onesis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sp. Esperance (M.E. French 1579) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Eyre (K. Hill & L.A.S. Johnson KH 2170) replace: Eucalyptus sp. Eyre (K.Hill & L.A.S. Johnson KH 2170) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fitzgerald River (M.I.H. Brooker 10923) replace: Eucalyptus sp. Fitzgerald River (M.I.H.Brooker 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range (D. Nicolle 2157) replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. H Kimberley Flora (S.J. Forbes 2560) replace: Eucalyptus sp. H Kimberley Flora (S.G.Forbes 2560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Marvel Loch (D. Nicolle & M. French DN 4794) replace: Eucalyptus sp. Marvel Loch (D.Nicolle & M.French DN 4794) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Ravensthorpe (A.S. George 616) Southern Red Mallee replace: Eucalyptus sp. Ravensthorpe (A.S.George 616) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Truslove (M.I.H. Brooker 7499) replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L. Johnson 9127 & B. Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbalanites replace: Eucalyptus x balanites reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbennettiae replace: Eucalyptus x bennettiae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbrachyphylla replace: Eucalyptus x brachyphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xcarnabyi replace: Eucalyptus x carnabyi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xchrysantha replace: Eucalyptus x chrysantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerectifolia replace: Eucalyptus erectifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerythrandra replace: Eucalyptus x erythrandra reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ximpensa replace: Eucalyptus x impensa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xkalganensis replace: Eucalyptus x kalganensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xlateritica replace: Eucalyptus x lateritica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmissilis replace: Eucalyptus x missilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmundijongensis replace: Eucalyptus x mundijongensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xphylacis replace: Eucalyptus x phylacis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xstoataptera replace: Eucalyptus x stoataptera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xtetragona replace: Eucalyptus x tetragona reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii subsp. drummondii replace: Euphorbia drummondii var. drummondii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euphorbia sp. B Kimberley Flora (B.J. Carter 629) replace: Euphorbia sp. B Kimberley Flora (B.J.Carter 629) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. sparsifolia replace: Eutaxia epacridoides subsp. sparsifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. hirsuta replace: Eutaxia neurocalyx subsp. hirsuta MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. leptophylla replace: Eutaxia neurocalyx subsp. leptophylla MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. major replace: Eutaxia neurocalyx subsp. major MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia sp. Jasper Hill (R.J. Cranfield 8607) replace: Eutaxia sp. Jasper Hill (R.J.Cranfield 8607) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia sp. North Ironcap (P. Armstrong PA 06/898) replace: Eutaxia sp. North Ironcap (P.Armstrong et al. 06/898) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. A Kimberley Flora (A.S. George 13584) replace: Fimbristylis sp. A Kimberley Flora (A.S.George 13584) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. B Kimberley Flora (K.A. Menkhorst 767) replace: Fimbristylis sp. B Kimberley Flora (K.A.Menkhorst 767) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. C Kimberley Flora (T.G. Hartley 14511) replace: Fimbristylis sp. C Kimberley Flora (T.G.Hartley 14511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. D Kimberley Flora (A.C. Beauglehole 52448) replace: Fimbristylis sp. D Kimberley Flora (A.C.Beauglehole 52448) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. E Kimberley Flora (C.R. Dunlop 5403) replace: Fimbristylis sp. E Kimberley Flora (C.R.Dunlop 5403) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. F Kimberley Flora (A.S. George 13789) replace: Fimbristylis sp. F Kimberley Flora (A.S.George 13789) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. G Kimberley Flora (A.C. Beauglehole 51810) replace: Fimbristylis sp. G Kimberley Flora (A.C.Beauglehole 51810) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. I Kimberley Flora (R.J. Hnatiuk 112) replace: Fimbristylis sp. I Kimberley Flora (R.J.Hnatiuk 112) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. K Kimberley Flora (E. Langfield 40) replace: Fimbristylis sp. K Kimberley Flora (E.Langfield 40) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. L Kimberley Flora (K.F. Kenneally 11167) replace: Fimbristylis sp. L Kimberley Flora (K.F.Kenneally 11167) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Shay Gap (K.R. Newbey 10293) replace: Fimbristylis sp. Shay Gap (K.R.Newby 10293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Gahnia sp. dull bases (K.R. Newbey 5111) - replace: Gahnia sp. dull bases (K.R.Newbey 5111) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. Headland (G.J. Keighery 8501) replace: Gahnia sp. Headland (G.J.Keighery 8501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. L (K.R. Newbey 7888) replace: Gahnia sp. L (K.R.Newbey 7888) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gahnia sp. dull bases (K.R. Newbey 5111) + replace: Gahnia sp. dull bases (K.R.Newbey 5111) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Gastrolobium sp. East Peak (E.D. Middleton EDM 43) replace: Gastrolobium sp. East Peak (E.D.Middleton EDM 43) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Harvey (G.J. Keighery 16821) replace: Gastrolobium sp. Harvey (G.J.Keighery 16821) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Prostrate Boddington (M. Hislop 2130) replace: Gastrolobium sp. Prostrate Boddington (M.Hislop 2130) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium wonganense replace: Gastrolobium wonganensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A. Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A.Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Marchagee (A. Crawford ADC 1353) replace: Geleznowia sp. Marchagee (A.Crawford ADC 1353) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia verrucosa subsp. Kalbarri replace: Geleznowia verrucosa subsp. Kalbarri (L.M.Broadhurst 123) L.M.Broadh. reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Genus sp. Hamersley Range hilltops (S. van Leeuwen 4345) replace: Genus sp. Hamersley Range hilltops (S.van Leeuwen 4345) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Nillup (R.D. Royce 98) replace: Genus sp. Nillup (R.D.Royce 98) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonota replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine lactovirens replace: Glycine lactivirens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Billabong (B. Nordenstam & A. Anderberg 203) replace: Gnephosis sp. Billabong (B.Nordenstam & A.Anderberg 203) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Norseman (K.R. Newbey 8096) replace: Gnephosis sp. Norseman (K.R.Newbey 8096) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Pt Quobba (P.G. Wilson 12622) replace: Gnephosis sp. Pt Quobba (P.G.Wilson 12622) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Stirling Range (C.F. Wilkins et al. CW 2513) replace: Gompholobium sp. Stirling Range (C.F.Wilkins et al. CW 2513) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Belele (D.W. Goodall 3215) replace: Gomphrena sp. Belele (D.W.Goodall 3215) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Maret Islands (A.A. Mitchell 5414) replace: Gomphrena sp. Maret Islands (A.A.Mitchell 5414) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia affinis de replace: Goodenia affinis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pinifolia de replace: Goodenia pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pulchella subsp. Coastal Plain A replace: Goodenia pulchella subsp. Coastal Plain A (M.Hislop 634) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Coastal Plain B replace: Goodenia pulchella subsp. Coastal Plain B (L.W.Sage 2336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Dragon Rocks replace: Goodenia pulchella subsp. Dragon Rocks (A.M.Coates 3374) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Mt Barker replace: Goodenia pulchella subsp. Mt Barker (K.F.Kenneally 1166) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Wheatbelt replace: Goodenia pulchella subsp. Wheatbelt (L.W.Sage & F.Hort 795) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia sp. Bachsten Creek (M.D. Barrett 685) replace: Goodenia sp. Bachsten Creek (M.D.Barrett 685) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Beyondie (L.W. Sage & S. van Leeuwen LWS 2518) replace: Goodenia sp. Beyondie (L.W.Sage & S.J.van Leeuwen LWS 2518) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Carnarvon Range (D.J. Edinger Nats 30) replace: Goodenia sp. Carnarvon Range (D.J.Edinger Nats 30) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Dampier Peninsula (B.J. Carter 675) replace: Goodenia sp. Dampier Peninsula (B.J.Carter 675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Little Sandy Desert (A.S. Mitchell 989) replace: Goodenia sp. Little Sandy Desert (A.S.Mitchell 989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mount Bomford (M.D. Barrett 423) replace: Goodenia sp. Mount Bomford (M.D.Barrett 423) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mt Elvire (D.J. Edinger 1857) replace: Goodenia sp. Mt Elvire (D.J.Edinger 1857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. South Coast (A.R. Annels ARA 1846) replace: Goodenia sp. South Coast (A.R.Annels 1846) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Stirling Range (R. Cranfield & D. Kabay 9148) replace: Goodenia sp. Stirling Range (R.Cranfield & D.Kabay 9148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia xanthotricha de replace: Goodenia xanthotricha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grammosolen sp. Mt Ridley (W.R. Archer 1210911) replace: Grammosolen sp. Mt Ridley (W.R.Archer 1210911) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Gunapin (F. Hort 308) replace: Grevillea sp. Gunapin (F.Hort 308) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Stirling Range (D.J. McGillivray 3488 & A.S. George) replace: Grevillea sp. Stirling Range (D.J.McGillivray 3488 & A.S.George) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Victoria Desert (R. Davis et al. RD 11611) replace: Grevillea sp. Victoria Desert (R.Davis et al. RD 11611) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Yerilgee Hills (T. Laslett TL 025) replace: Grevillea sp. Yerilgee Hills (T.Laslett TL 025) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea squiresae replace: Grevillea squiresiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gunniopsis sp. Nuytsland (G.J. Keighery & J.J. Alford 522) replace: Gunniopsis sp. Nuytsland (G.J.Keighery & J.J.Alford 522) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon sp. Whoogarup Range (A.S. George 1910) replace: Gyrostemon sp. Whoogarup Range (A.S.George 1910) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum sp. A Kimberley Flora (K.F. Kenneally 8639) replace: Haemodorum sp. A Kimberley Flora (K.F.Kenneally 8639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea sp. Great Victoria Desert (L. Cockram LAC 139) - replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) + replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (B. Keighery 2599) replace: Hakea sp. Walyunga (B.Keighery 2599) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (L. Penn s.n.) replace: Hakea sp. Walyunga (L.Penn s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Yalgorup (B.J. Keighery & N. Gibson 897) replace: Hakea sp. Yalgorup (B.J.Keighery & N.Gibson 897) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. A Kimberley Flora (H.A. Johnson 5123) replace: Halgania sp. A Kimberley Flora (H.A.Johnson 5123) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Peak Eleanora (M.A. Burgman 3547 B) replace: Halgania sp. Peak Eleanora (M.A.Burgman 3547 B) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Wongan Hills (K.F. Kenneally 2393) replace: Halgania sp. Wongan Hills (K.F.Kenneally 2393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. Lake Grace replace: Halosarcia halocnemoides subsp. Lake Grace ( N.Casson G231.10) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia sp. Lake Moore (M.N. Lyons 2603) replace: Halosarcia sp. Lake Moore (M.N.Lyons 2603) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa sp. Eremaean (A.S. George 3894) replace: Harmsiodoxa sp. Eremaean (A.S.George 3894) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Bachsten Creek (R.L. Barrett & M.D. Barrett RLB 3808) replace: Helicteres sp. Bachsten Creek (R.L.Barrett & M.D.Barrett RLB 3808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Carson River (I. Cowie & Wendell IC 4232) replace: Helicteres sp. Carson River (I.Cowie & Wendell IC 4232) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Manning Peak (K.F. Kenneally 10266 & B.P.M. Hyland) replace: Helicteres sp. Manning Peak (K.F.Kenneally 10266 & B.P.M.Hyland) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mertens Falls (K.F. Kenneally 7887) replace: Helicteres sp. Mertens Falls (K.F.Kenneally 7887) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mt Shadforth (I.R. Telford 11609) replace: Helicteres sp. Mt Shadforth (I.R.Telford 11609) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Arrino (J.J. Alford 1175) replace: Hemigenia sp. Arrino (J.J.Alford 1175) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Cue (K.F. Kenneally 47A) replace: Hemigenia sp. Cue (K.F.Kenneally 47A) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Dalwallinu (W.E. Blackall 2870) replace: Hemigenia sp. Dalwallinu (W.E.Blackall 2870) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Edah (J.W. Green 1601) replace: Hemigenia sp. Edah (J. W.Green 1601) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Gibson (R. Coveny 7893 & B.R. Maslin) replace: Hemigenia sp. Gibson (R.Coveny 7893 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Glenburgh (R.J. Cranfield 9725) replace: Hemigenia sp. Glenburgh (R.J.Cranfield 9725) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Jibberding (J. D'Alonzo 418) replace: Hemigenia sp. Jibberding (J.D'Alonzo 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Hemigenia sp. major (C.A. Gardner 2677) - replace: Hemigenia sp. major (C.A.Gardner 2677) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Merredin (M. Koch 2959) replace: Hemigenia sp. Merredin (M.Koch 2959) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Newdegate (E. Bishop 75) replace: Hemigenia sp. Newdegate (E.Bishop 75) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Paynes Find (A.C. Beauglehole 49138) replace: Hemigenia sp. Paynes Find (A.C.Beauglehole 49138) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Pindar (H. Demarz 7428) replace: Hemigenia sp. Pindar (H.Demarz 7428) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Tallering (H. Pringle 3323) replace: Hemigenia sp. Tallering (H.Pringle 3323) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Wilroy (B.J. Conn 2150) replace: Hemigenia sp. Wilroy (B.J.Conn 2150) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yalgoo (A.M. Ashby 2624) replace: Hemigenia sp. Yalgoo (A.M.Ashby 2624) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yuna (A.C. Burns 95) replace: Hemigenia sp. Yuna (A.C.Burns 95) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hemigenia sp. major (C.A. Gardner 2677) + replace: Hemigenia sp. major (C.A.Gardner 2677) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Hibbertia sp. A Kimberley Flora (T.E.H. Aplin et al. 898) replace: Hibbertia sp. A Kimberley Flora (T.E.H.Aplin et al. 898) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Kojonup (C.M. Lewis 288) replace: Hibbertia sp. Kojonup (C.M.Lewis 288) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Tathra (M.A. Langley & J.M. Harvey 1873) replace: Hibbertia sp. Tathra (M.A.Langley & J.M.Harvey 1873) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. A Kimberley Flora (E.A. Chesterfield 310) replace: Hibiscus sp. A Kimberley Flora (E.A.Chestfield 310) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. B Kimberley Flora (P.G. Wilson 11143) replace: Hibiscus sp. B Kimberley Flora (P.G.Wilson 11143) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Canga (P.J.H. Hurter & J. Naaykens 11013) replace: Hibiscus sp. Canga (P.J.H.Hurter & J.Naaykens 11013) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Brockman (E. Thoma ET 1354) replace: Hibiscus sp. Mt Brockman (E.Thoma ET 1354) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Robinson (G. Byrne 3537) replace: Hibiscus sp. Mt Robinson (G.Byrne 3537) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Theda (M.D. Barrett & R.L. Barrett MDB 2144) replace: Hibiscus sp. Theda (M.D.Barrett & R.L.Barrett MDB 2144) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Wonganoo Station (K. Boladeras 125) replace: Hibiscus sp. Wonganoo Station (K.Boladeras 125) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydatella sp. Austin Bay (N. Gibson & M. Lyons 2387) replace: Hydatella sp. Austin Bay (N.Gibson & M.Lyons 2387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coorowensis replace: Hydrocotyle coorowensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coraginaensis replace: Hydrocotyle coraginaensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle crassipes replace: Hydrocotyle crassipes MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle decipiens replace: Hydrocotyle decipiens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle hexaptera replace: Hydrocotyle hexaptera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Truslove (M.A. Burgman 4419) replace: Hydrocotyle sp. Truslove (M.A.Burgman 4419) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Warriedar (P.G. Wilson 12267) replace: Hydrocotyle sp. Warriedar (P.G.Wilson 12267) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle vigintimilia replace: Hydrocotyle vigintimilia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20896) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cataby (G.J. Keighery 5151) replace: Hypocalymma sp. Cataby (G.J.Keighery 5151) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis sp. Prince Regent River (M.D. Barrett 924 B) replace: Hypoxis sp. Prince Regent River (M.D.Barrett 924 B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera mackinlayi replace: Indigofera mckinlayi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. A Kimberley Flora (G.J. Keighery & N. Gibson 70) replace: Indigofera sp. A Kimberley Flora (G.J.Keighery & N.Gibson 70) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Bungaroo Creek (S. van Leeuwen 4301) replace: Indigofera sp. Bungaroo Creek (S.van Leeuwen 4301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Mackinlayi (A.A. Mitchell 7086) replace: Indigofera sp. Mackinlayi (A.A.Mitchell 7086) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Warburton (A.A. Munir 5209) replace: Indigofera sp. Warburton (A.A.Munir 5209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. A Kimberley Flora (L.J. Penn 84) replace: Ipomoea sp. A Kimberley Flora (L.J.Pen 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. Kalumburu (A.A. Mitchell 3869B) replace: Ipomoea sp. Kalumburu (A.A.Mitchell 3869B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Canning Reservoir (M.D. Tindale 121 & B.R. Maslin) replace: Isopogon sp. Canning Reservoir (M.D.Tindale 121 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Darling Range (F. Hort 1662) replace: Isopogon sp. Darling Range (F.Hort 1662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Ravensthorpe (D.B. Foreman 1207) replace: Isopogon sp. Ravensthorpe (D.B.Foreman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Watheroo (D. Foreman 477) replace: Isopogon sp. Watheroo (D.Foreman 477) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. cristata replace: Isotoma hypocrateriformis var. cristata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotropis sp. Arid zone (G. Byrne 2775) replace: Isotropis iophyta reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Shark Bay (M.E. Trudgen 7170) replace: Isotropis sp. Shark Bay (M.E.Trudgen 7170) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Yalgoo (S. Patrick 2375) replace: Isotropis petrensis reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum sp. Exmouth (G. Marsh 77) replace: Jasminum sp. Exmouth (G.Marsh 77) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Marandoo (M.E. Trudgen 1554) replace: Josephinia sp. Marandoo (M.E.Trudgen 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Mt Edgar Station (N.T. Burbidge 1194) replace: Josephinia sp. Mt Edgar Station (N.T.Burbidge 1194) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia sp. South coast (T.R. Lally 1576 & I.P. Lally) replace: Kennedia sp. south coast (T.R.Lally 1576 & I.P.Lally) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia adenogyna replace: Keraudrenia adenogyna MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. cacaobrunnea ms replace: Keraudrenia cacaobrunnea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. undulata replace: Keraudrenia cacaobrunnea subsp. undulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia saxatilis replace: Keraudrenia saxatilis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia velutina subsp. elliptica replace: Keraudrenia velutina subsp. elliptica MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia velutina subsp. velutina replace: Keraudrenia velutina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lambertia orbifolia subsp. Scott River Plains replace: Lambertia orbifolia subsp. Scott River Plains (L.W.Sage 684) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lasiopetalum leucogriseum replace: Lasiopetalum leucogriseum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A. Griffin 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E. Ried 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E.Reid 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Denmark (B.G. Hammersley 2012) replace: Lasiopetalum sp. Denmark (B.G.Hammersley 2012) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Desmond (N. McQuoid 653) replace: Lasiopetalum sp. Desmond (N.McQuoid 653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Hill River (T.N. Stoate 5) replace: Lasiopetalum sp. Hill River (T.N.Stoate 5) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Kukerin (C.A. Gardner 13646) replace: Lasiopetalum sp. Kukerin (C.A.Gardner 13646) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Caroline (S.D. Hopper SDH 6381) replace: Lasiopetalum sp. Mount Caroline (S.D.Hopper SDH 6381) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Lesueur (E.A. Griffin 1997) replace: Lasiopetalum sp. Mount Lesueur (E.A.Griffin 1997) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mt Ragged (T.E.H. Aplin 4349) replace: Lasiopetalum sp. Mt Ragged (T.E.H.Aplin 4349) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Northam (F. Hort 1196) replace: Lasiopetalum sp. Northam (F.Hort 1196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Toodyay (F. Hort 2689) replace: Lasiopetalum sp. Toodyay (F.Hort 2689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K. Shepherd & C. Wilkins KS 220) replace: Lasiopetalum erectifolium reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Weam Reserve (M. Hislop 2755) replace: Lasiopetalum sp. Weam Reserve (M.Hislop 2755) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea pinnacula replace: Latrobea pinnaculum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea sp. South Coast (A.M. Ashby 1949) replace: Latrobea sp. South Coast (A.M.Ashby 1949) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencia sp. Anna Plains (N.T. Burbidge 1433) replace: Lawrencia sp. Anna Plains (N.T.Burbidge 1433) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia formosa subsp. Wheatbelt replace: Lechenaultia formosa subsp. 'Wheatbelt' (R.J.Cranfield 4718) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidobolus preissianus subsp. arcuatus replace: Lepidobolus preissianus subsp. 'arcuatus' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidosperma sp. A2 Island Flat (G.J. Keighery 7000) replace: Lepidosperma sp. A2 Island Flat (G.J.Keighery 7000) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Giant Terete Culms (S.D. Hopper 8631) replace: Lepidosperma sp. Giant Terete Culms (S.D.Hopper 8631) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. K Boorabbin (K.L. Wilson 2579) replace: Lepidosperma sp. K Boorabbin (K.L.Wilson 2579) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. U1 big heads (A.S. George 11294) replace: Lepidosperma sp. U1 big heads (A.S.George 11294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Z dark sheath (P.G. Wilson 10177) replace: Lepidosperma sp. Z dark sheath (P.G.Wilson 10177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema cervicorne replace: Leptosema cervicornu reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum sp. Peak Charles/Norseman (K.R. Newbey 5243) replace: Leptospermum sp. Peak Charles/Norseman (K.R.Newbey 5243) reason: Manual match to APC accepted name (Elizabeth Wenk, 2022-11-21) @@ -2525,903 +2527,903 @@ taxonomic_updates: - find: Leucanthemum xsuperbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon compressicarpus replace: Leucopogon compressicarpus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon inflexifolius replace: Leucopogon inflexifolius MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Badgingarra (R. Davis 421) replace: Leucopogon sp. Badgingarra (R.Davis 421) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Barren Range (A.S. George 10092) replace: Leucopogon sp. Barren Range (A.S.George 10092) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bifid Eneabba (M. Hislop 1927) replace: Leucopogon sp. Bifid Eneabba (M.Hislop 1927) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bindoon (F. Hort 2766) replace: Leucopogon sp. Bindoon (F.Hort 2766) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bonnie Hill (K.R. Newbey 9831) replace: Leucopogon sp. Bonnie Hill (K.R.Newbey 9831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Boyagin (M. Hislop 2825) replace: Leucopogon sp. Boyagin (M.Hislop 2825) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bremer Bay (K.R. Newbey 4667) replace: Leucopogon sp. Bremer Bay (K.R.Newbey 4667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Brookton (K. Kershaw & L. Kerrigan KK 2192) replace: Leucopogon sp. Brookton (K.Kershaw & L.Kerrigan KK2192) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bungulla (R.D. Royce 3435) replace: Leucopogon sp. Bungulla (R.D.Royce 3435) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Cape Arid (M. Paxman 50) replace: Leucopogon sp. Cape Arid (M.Paxman 50) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) - replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Clyde Hill (M.A. Burgman 1207) replace: Leucopogon sp. Clyde Hill (M.A.Burgman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coolgardie (M. Hislop & F. Hort MH 3197) replace: Leucopogon sp. Coolgardie (M.Hislop & F.Hort MH3197) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Corrigin (K. Kershaw KK 2091) replace: Leucopogon sp. Corrigin (K.Kershaw KK2091) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Darradup (R.D. Royce 2998) replace: Leucopogon sp. Darradup (R.D.Royce 2998) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Denmark (J.M. Powell 1167) replace: Leucopogon sp. Denmark (J.M.Powell 1167) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Flynn (F. Hort, J. Hort & A. Lowrie 859) replace: Leucopogon sp. Flynn (F.Hort, J.Hort & A.Lowrie 859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Gunapin (F. Hort 808) replace: Leucopogon sp. Gunapin (F.Hort 808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Howatharra (D. & N. McFarland 1046) replace: Leucopogon sp. Howatharra (D. & N.McFarland 1046) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ironcaps (N. Gibson & K. Brown 3070) replace: Leucopogon sp. Ironcaps (N.Gibson & K.Brown 3070) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kalbarri (J.M. Powell 1695) replace: Leucopogon sp. Kalbarri (J.M.Powell 1695) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kau Rock (M.A. Burgman 1126) replace: Leucopogon sp. Kau Rock (M.A.Burgman 1126) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lesueur (B. Evans 530) replace: Leucopogon sp. Lesueur (B.Evans 530) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lort River (M. Golding 3) replace: Leucopogon sp. Lort River (M.Golding 3) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Margaret River (J. Scott 207) replace: Leucopogon sp. Margaret River (J.Scott 207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mid West (J.S. Beard 7388) replace: Leucopogon sp. Mid West (J.S.Beard 7388) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moore River (M. Hislop 1695) replace: Leucopogon sp. Moore River (M.Hislop 1695) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moresby Range (S. Patrick 2614) replace: Leucopogon sp. Moresby Range (S.Patrick 2614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mount Heywood (M.A. Burgman 1211) replace: Leucopogon sp. Mount Heywood (M.A.Burgman 1211) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Murdoch (M. Hislop 1037) replace: Leucopogon sp. Murdoch (M.Hislop 1037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ongerup (A.S. George 16682) replace: Leucopogon sp. Ongerup (A.S.George 16682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) - replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Pingrup (W.E. Blackall 3010) replace: Leucopogon sp. Pingrup (W.E.Blackall 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Roberts Swamp (K.R. Newbey 8173) replace: Leucopogon sp. Roberts Swamp (K.R.Newbey 8173) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Salt Lake (G.F. Craig 3069) replace: Leucopogon sp. Salt Lake (G.F.Craig 3069) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. South Coast (K.R. Newbey 8213) replace: Leucopogon sp. South Coast (K.R.Newbey 8213) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Southern Granite (E.D. Middleton EDM 266) replace: Leucopogon sp. Southern Granite (E.D.Middleton EDM266) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Twertup (K.R. Newbey 10859) replace: Leucopogon sp. Twertup (K.Newbey 10859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Walpole (R.J. Cranfield 10940) replace: Leucopogon sp. Walpole (R.J.Cranfield 10940) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wandering (F. Hort 419) replace: Leucopogon sp. Wandering (F.Hort 419) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Warradarge (M. Hislop 1908) replace: Leucopogon sp. Warradarge (M.Hislop 1908) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wheatbelt (S. Murray 257) replace: Leucopogon sp. Wheatbelt (S.Murray 257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Whicher Range (G.J. Keighery 11763) replace: Leucopogon sp. Whicher Range (G.J.Keighery 11763) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Windy Harbour (A. Strid 21460) replace: Leucopogon sp. Windy Harbour (A.Strid 21460) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanchep (M. Hislop 1986) replace: Leucopogon sp. Yanchep (M.Hislop 1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanneymooning (F. Mollemans 3797) replace: Leucopogon sp. Yanneymooning (F.Mollemans 3797) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) + replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) + replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Lobelia rhombifolia de replace: Lobelia rhombifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium perenne x rigidum replace: Lolium perenne subsp. rigidum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium xhubbardii replace: Lolium x hubbardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysinema ciliatum forma replace: Lysinema ciliatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Patience (C.P. Campbell 1052) replace: Maireana sp. Patience (C.P.Campbell 1052) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Adelong (G.J. Keighery 11825) replace: Malleostemon sp. Adelong (G.J.Keighery 11825) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooljarloo (B. Backhouse s.n. 16/11/88) replace: Malleostemon sp. Cooljarloo (B.Backhouse s.n. 16/11/88) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooloomia (S.D. Hopper 1353) replace: Malleostemon sp. Cooloomia (S.D.Hopper 1353) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Erangy Springs (M.E. Trudgen 12030) replace: Malleostemon sp. Erangy Springs (M.E.Trudgen 12030) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Hardabutt Rapids (D. Bellairs 1654A) replace: Malleostemon sp. Hardabutt Rapids (D.Bellairs 1654A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Kalbarri (L.A. Craven 7083) replace: Malleostemon sp. Kalbarri (L.A.Craven 7083) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Moonyoonooka (R.J. Cranfield 2947) replace: Malleostemon sp. Moonyoonooka (R.J.Cranfield 2947) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Mullewa (P. Winson B7365) replace: Malleostemon sp. Mullewa (P.Winson B7365) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Nerren Nerren (A. Payne 360) replace: Malleostemon sp. Nerren Nerren (A.Payne 360) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Officer Basin (D. Pearson 350) replace: Malleostemon sp. Officer Basin (D.Pearson 350) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Woolgorong Station (M. Officer 100) replace: Malleostemon sp. Woolgorong Station (M.Officer 100) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Yerina (S.J. Patrick 2728) replace: Malleostemon sp. Yerina (S.J.Patrick 2728) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp. Bremer (N. Gibson & M. Lyons 1776) replace: Marianthus sp. Bremer (N.Gibson & M.Lyons 1776) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. Mt Windell (S. van Leeuwen 846) replace: Maytenus sp. Mt Windell (S.van Leeuwen 846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Dongolocking (G.J. Keighery & N. Gibson 2896) replace: Melaleuca sp. Dongolocking (G.J.Keighery & N.Gibson 2896) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Gorse (A.S. George 7224) replace: Melaleuca sp. Gorse (A.S.George 7224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca xarenicola replace: Melaleuca x arenicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita var. citrata replace: Mentha x piperita var. citrata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha xpiperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Merremia sp. B Kimberley Flora (B.J. Carter 533) replace: Merremia sp. B Kimberley Flora (B.J.Carter 533) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Boxwood (K.R. Newbey 4200) replace: Microcorys sp. Boxwood (K.R.Newbey 4200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Forrestania (V. English 2004) replace: Microcorys sp. Forrestiana (V.English 2004) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Mt Gibson (S. Patrick 2098) replace: Microcorys sp. Mt Gibson (S.Patrick 2098) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Microcorys sp. stellate (A. Strid 21885) - replace: Microcorys sp. stellate (A.Strid 21885) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Tarin Rock (E.J. Croxford 5251) replace: Microcorys sp. Tarin Rock (E.J.Croxford 5251) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Microcorys sp. stellate (A. Strid 21885) + replace: Microcorys sp. stellate (A.Strid 21885) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Micromyrtus racemosa var. Jingemarra replace: Micromyrtus racemosa var. Jingemarra (R.J.Cranfield 5253a) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus triptycha subsp. elata replace: Micromyrtus triptycha subsp. elata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. longiflora replace: Micromyrtus triptycha subsp. longiflora MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia bursarioides replace: Mirbelia bursarioides MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia cordifolia replace: Mirbelia cordifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia magentea replace: Mirbelia magentea MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Bursarioides (T.R. Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Carnarvon (J.S. Beard 6008) replace: Mirbelia sp. Carnarvon (J.S.Beard 6008) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Denham (W.E. Blackall 556) replace: Mirbelia sp. Denham (W.E.Blackall 556) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Helena & Aurora (B.J. Lepschi 2003) replace: Mirbelia sp. Helena & Aurora (B.J.Lepschi 2003) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) - replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Kalbarri (M.D. Crisp 6261) replace: Mirbelia sp. Kalbarri (M.D.Crisp 6261) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Magentea (T.E.H. Aplin 5976) replace: Mirbelia sp. Magentea (T.E.H.Aplin 5976) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Mt Heywood (T.E.H. Aplin 4154) replace: Mirbelia sp. Mt Heywood (T.E.H.Aplin 4154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Ternata (M.D. Crisp & L.G. Cook MDC 9267) replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Zuytdorp (G.J. Keighery & N. Gibson 1688) replace: Mirbelia sp. Zuytdorp (G.J.Keighery & N.Gibson 1688) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) + replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Mukia sp. A Kimberley Flora (K.F. Kenneally 7909) replace: Mukia sp. A Kimberley Flora (K.F.Kenneally 7909) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. D Flora of Australia (A.A. Mitchell PRP 1121) replace: Mukia sp. D Flora of Australia (A.A.Mitchell PRP 1121) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia sp. Hamersley Station (A.A. Mitchell PRP 1479) replace: Oldenlandia sp. Hamersley Station (A.A.Mitchell PRP 1479) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia brachyglossa replace: Olearia brachyglossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. eremicola replace: Olearia dampieri subsp. eremicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ornithogalum longebracteatum replace: Ornithogalum longibracteatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion microphyllum replace: Otion microphyllum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion simplicifolium replace: Otion simplicifolium MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion tortile replace: Otion tortile MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium australe subsp. australe ms replace: Pelargonium australe var. australe reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium australe subsp. drummondii replace: Pelargonium australe subsp. drummondii MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pelargonium xasperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xdomesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pentalepis sp. Mt House (E.M. Bennett 1877) replace: Pentalepis sp. Mt House (E.M.Bennett 1877) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T. Burbidge & A. Kanis 8158) replace: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T.Burbidge & A.Kanis 8158) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S. Weston 12768) replace: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S.Weston 12768) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile squamata subsp. squamata replace: Petrophile squamata subsp. squamata MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petunia xhybrida replace: Petunia x hybrida reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Mt Gibbs (G.F. Craig 6658) replace: Phebalium sp. Mt Gibbs (G.F.Craig 6658) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Yerilgee Sandplain (J. Jackson 223) replace: Phebalium sp. Yerilgee Sandplain (J.Jackson 223) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca sp. Latham (F. Keast L4B 043) replace: Philotheca sp. Latham (F.Keast L4B 043) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca spicata subsp. Moore River National Park replace: Philotheca spicata subsp. Moore River National Park (G. & D.Woodman Op 47) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus sp. D Kimberley Flora (C.R. Dunlop 5302) replace: Phyllanthus sp. D Kimberley Flora (C.R.Dunlop 5302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilostyles sp. Northern Sandplains (P. Armstrong s.n. PERTH 06590179) replace: Pilostyles sp. Northern Sandplains (P.Armstrong s.n. PERTH 06590179) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Tarin Rock (E.J. Croxford 2118) replace: Pimelea sp. Tarin Rock (E.J.Croxford 2118) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Hamersley (M.E. Trudgen 11207) replace: Plantago sp. Hamersley (M.E.Trudgen 11207) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Mt Magnet (A.S. George 6793) replace: Plantago sp. Mt Magnet (A.S.George 6793) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus xhispanica replace: Platanus x hispanica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Eneabba (R. Hnatiuk 770001) replace: Platysace sp. Eneabba (R.Hnatiuk 770001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kalbarri (D. & B. Bellairs 1383) replace: Platysace sp. Kalbarri (D. & B.Bellairs 1383) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kennedy (P.G. Wilson 8450) replace: Platysace sp. Kennedy (P.G.Wilson 8450) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Stirling (J.M. Fox 88/262) replace: Platysace sp. Stirling (J.M.Fox 88/262) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea sp. B Kimberley Flora (K.F. Kenneally 9526A) replace: Pluchea sp. B Kimberley Flora (K.F.Kenneally 9526A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Carnarvon Range (D.J. Edinger Nats 33) replace: Podolepis sp. Carnarvon Range (D.J.Edinger Nats 33) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Great Victoria Desert (A.S. George 8219) replace: Podolepis sp. Great Victoria Desert (A.S.George 8219) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea sp. A Kimberley Flora (K.F. Kenneally 8887) replace: Polycarpaea sp. A Kimberley Flora (K.F.Kenneally 8887) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. A Kimberley Flora (K.F. Kenneally 7752) replace: Polygala sp. A Kimberley Flora (K.F.Kenneally 7752) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. B Kimberley Flora (T.E.H. Aplin et al. 715) replace: Polygala sp. B Kimberley Flora (T.E.H.Aplin et al. 715) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria sp. A Kimberley Flora (T.E.H. Aplin et al. 418) replace: Polymeria sp. A Kimberley Flora (T.E.H.Aplin et al. 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. desert (A.S. George 11968) replace: Pomax sp. desert (A.S.George 11968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poranthera sp. Kings Park (R.L. Barrett 2958) replace: Poranthera sp. Kings Park (R.L.Barrett 2958) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bruce Rock (J. Buegge D36) replace: Pseudactinia sp. Bruce Rock (J.Buegge D36) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bungalbin Hill (F.H. & M.P. Mollemans 3069) replace: Pseudactinia sp. Bungalbin Hill (F.H. & M.P.Mollemans 3069) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon sp. A Kimberley Flora (B.J. Carter 599) replace: Pterocaulon sp. A Kimberley Flora (B.J.Carter 599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. broad petals (S.D. Hopper 4429) - replace: Pterostylis sp. broad petals (S.D.Hopper 4429) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Arid (G. Brockman GBB 263) replace: Pterostylis sp. Cape Arid (G.Brockman GBB 263) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Le Grand (I. Solomon 550) replace: Pterostylis sp. Cape Le Grand (I.Solomon 550) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. Helena River (G. Brockman GBB 340) + replace: Pterostylis sp. Helena River (G.Brockman GBB 340) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Karri forest (W. Jackson BJ270) + replace: Pterostylis sp. Karri forest (W.Jackson BJ270) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Northampton (S.D. Hopper 3349) + replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) + replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) + replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) + replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. broad petals (S.D. Hopper 4429) + replace: Pterostylis sp. broad petals (S.D.Hopper 4429) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Pterostylis sp. cauline leaves (N. Gibson & M.N. Lyons 1490) replace: Pterostylis sp. cauline leaves (N.Gibson & M.N.Lyons 1490) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. clubbed snail orchid (R. Davis 8088) replace: Pterostylis sp. clubbed snail orchid (R.Davis 8088) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. crinkled leaf (G.J. Keighery 13426) replace: Pterostylis sp. crinkled leaf (G.J.Keighery 13426) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. dainty brown (N. Gibson & M. Lyons 3690) replace: Pterostylis sp. dainty brown (N.Gibson & M.Lyons 3690) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. elegant snail orchid (G. Brockman GBB 1194) replace: Pterostylis sp. elegant snail orchid (G.Brockman GBB 1194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. exserted labellum (A.C. Beauglehole 12194) replace: Pterostylis sp. exserted labellum (A.C.Beauglehole 12194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. extended dorsal sepal (G. Paull 731) replace: Pterostylis sp. extended dorsal sepal (G.Paull 731) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. fragile (S. Barrett 553) replace: Pterostylis sp. fragile (S.Barrett 553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. granite (W. Jackson BJ351) replace: Pterostylis sp. granite (W.Jackson BJ351) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Helena River (G. Brockman GBB 340) - replace: Pterostylis sp. Helena River (G.Brockman GBB 340) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. inland (A.C. Beauglehole 11880) replace: Pterostylis sp. inland (A.C.Beauglehole 11880) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Karri forest (W. Jackson BJ270) - replace: Pterostylis sp. Karri forest (W.Jackson BJ270) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. late flowering (W. Jackson BJ298) replace: Pterostylis sp. late flowering (W.Jackson BJ298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. limestone (B.J. Keighery & G.J. Keighery 65) replace: Pterostylis sp. limestone (B.J.Keighery & G.J.Keighery 65) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. mid-west coast (G. Brockman GBB134) replace: Pterostylis sp. mid-west coast (G.Brockman GBB134) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. miniature (J.R. Wheeler 3298) replace: Pterostylis sp. miniature (J.R.Wheeler 3298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Northampton (S.D. Hopper 3349) - replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) - replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. red flowered (W. Jackson BJ269) replace: Pterostylis sp. red flowered (W.Jackson BJ269) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. robust (W. Jackson BJ294) replace: Pterostylis sp. robust (W.Jackson BJ294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. scooped sepals (G. Brockman GBB386) replace: Pterostylis sp. scooped sepals (G.Brockman GBB386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. short sepals (W. Jackson BJ259) replace: Pterostylis sp. short sepals (W.Jackson BJ259) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) - replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. small stature (W. Jackson BJ303) replace: Pterostylis sp. small stature (W.Jackson BJ303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) - replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. striped sepal greenhood (G. Brockman GBB355) replace: Pterostylis sp. striped sepal greenhood (G.Brockman GBB355) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. yellow eared (W. Jackson BJ359) replace: Pterostylis sp. yellow eared (W.Jackson BJ359) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus humilis subsp. humilis replace: Ptilotus humilis var. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus humilis subsp. parviflorus replace: Ptilotus humilis var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus sp. Beaufort River (G.J. Keighery 16554) replace: Ptilotus sp. Beaufort River (G.J.Keighery 16554) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Burnerbinmah (S. Patrick 2787) replace: Ptilotus sp. Burnerbinmah (S.Patrick 2787) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Mt Narryer (A.S. George 17484) replace: Ptilotus sp. Mt Narryer (A.S.George 17484) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Northampton (R. Davis 10952) replace: Ptilotus sp. Northampton (R.Davis 10952) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Porongurup (R. Davis 10805) replace: Ptilotus sp. Porongurup (R.Davis 10805) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Puccinellia sp. Warren Road (M.N. Lyons 2710) replace: Puccinellia sp. Warren Road (M.N.Lyons 2710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Kundip (G.F. Craig 6008) replace: Pultenaea sp. Kundip (G.F.Craig 6008) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (J.S. Beard 7827) replace: Pultenaea sp. Mt Lesueur (J.S.Beard 7827) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (L.A. Orthia 86) replace: Pultenaea sp. Mt Lesueur (L.A.Orthia 86) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. southern (L.A. Orthia 39) replace: Pultenaea sp. southern (L.A.Orthia 39) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia sp. Watheroo (R.J. Cranfield & P.J. Spencer 8183) replace: Rhagodia sp. Watheroo (R.J.Cranfield & P.J.Spencer 8183) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe pollackii replace: Rhodanthe polakii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe sp. Overlander (P.S. Short 2096) replace: Rhodanthe sp. Overlander (P.S.Short 2096) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. A Kimberley Flora (C.R. Dunlop 5329) replace: Rhynchospora sp. A Kimberley Flora (C.R.Dunlop 5329) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. B Kimberley Flora (A.S. Weston 12363) replace: Rhynchospora sp. B Kimberley Flora (A.S.Weston 12363) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus xloganobaccus replace: Rubus x loganobaccus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruellia sp. A Kimberley Flora (K.F. Kenneally 9007) replace: Ruellia sp. A Kimberley Flora (K.F.Kenneally 9007) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia apella replace: Rulingia apella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia sp. Trigwell Bridge (R. Smith s.n. 20.6.89) replace: Rulingia sp. Trigwell Bridge (R.Smith s.n. 20.6.1989) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xjohannis-moorei replace: Rumex x johannis-moorei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xmuretii replace: Rumex x muretii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpratensis replace: Rumex x pratensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpseudopulcher replace: Rumex x pseudopulcher reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xschultzei replace: Rumex x schultzei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia xmolesta replace: Salvinia x molesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Millstream (M.I.H. Brooker 2076) replace: Samolus sp. Millstream (M.I.H.Brooker 2076) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Shark Bay (M.E. Trudgen 7410) replace: Samolus sp. Shark Bay (M.E.Trudgen 7410) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sauropus sp. Woolgorong (M. Officer s.n. 10/8/94) replace: Sauropus sp. Woolgorong (M.Officer s.n. 10/8/94) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola humifusa de replace: Scaevola humifusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de replace: Scaevola repens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de var. repens replace: Scaevola repens var. repens reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola repens subsp. Northern Sandplains replace: Scaevola repens subsp. Northern Sandplains (R.J.Cranfield & P.J.Spencer 8445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola repens var. angustifolia de replace: Scaevola repens var. angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola sp. Hamersley Range basalts (S. van Leeuwen 3675) replace: Scaevola sp. Hamersley Range basalts (S.van Leeuwen 3675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Lake Cairlocup (K. Newbey 9834) replace: Scaevola sp. Lake Cairlocup (K.Newbey 9834) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sesquispiculus replace: Schoenus sesquispicula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A1 Boorabbin (K.L. Wilson 2581) replace: Schoenus sp. A1 Boorabbin (K.L.Wilson 2581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A2 Kulin (B.G. Briggs 7939) replace: Schoenus sp. A2 Kulin (B.G.Briggs 7939) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 Ciliate Sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Beaufort (G.J. Keighery 6291) replace: Schoenus sp. [Schoenus sp. Beaufort (G.J. Keighery 6291); WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3430,374 +3432,374 @@ taxonomic_updates: - find: Schoenus sp. Bullsbrook (J.J. Alford 915) replace: Schoenus sp. Bullsbrook (J.J.Alford 915) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Cape Riche Cushion (G.J. Keighery 9922) replace: Schoenus sp. Cape Riche Cushion (G.J.Keighery 9922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. G Broad Sheath (K.L. Wilson 2633) replace: Schoenus sp. G Broad Sheath (K.L.Wilson 2633) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grassy (E. Gude & J. Harvey 250) replace: Schoenus sp. Grassy (E.Gude & J.Harvey 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grey Rhizome (K.L. Wilson 2922) replace: Schoenus sp. Grey Rhizome (K.L.Wilson 2922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Jindong (R.D. Royce 2485) replace: Schoenus sp. Jindong (R.D.Royce 2485) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Kalbarri (K.R. Newbey 9352) replace: Schoenus sp. Kalbarri (K.R.Newbey 9352) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Mt Barker (G.J. Keighery 9679) replace: Schoenus sp. Mt Barker (G.J.Keighery 9679) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Murchison (K.L. Wilson 2647) replace: Schoenus sp. Murchison (K.L.Wilson 2647) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Schoenus sp. smooth culms (K.R. Newbey 7823) - replace: Schoenus sp. smooth culms (Newbey 7823) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Stirling (G.J. Keighery 3427) replace: Schoenus sp. Stirling (G.J.Keighery 3427) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Toodyay (G.J. Keighery & N. Gibson 2918) replace: Schoenus sp. Toodyay (G.J.Keighery & N.Gibson 2918) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Waroona (G.J. Keighery 12235) replace: Schoenus sp. Waroona (G.J.Keighery 12235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Schoenus sp. smooth culms (K.R. Newbey 7823) + replace: Schoenus sp. smooth culms (Newbey 7823) + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-21) + taxonomic_resolution: species - find: Scholtzia sp. Ajana (T.A. Halliday 137) replace: Scholtzia sp. Ajana (T.A.Halliday 137) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu (M.E. Trudgen 2218) replace: Scholtzia sp. Binnu (M.E.Trudgen 2218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu East Road (M.E. Trudgen 12013) replace: Scholtzia sp. Binnu East Road (M.E.Trudgen 12013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. East Yuna (A.C. Burns 6) replace: Scholtzia sp. East Yuna (A.C.Burns 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eneabba (S. Maley 8) replace: Scholtzia sp. Eneabba (S.Maley 8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eradu (R.D. Royce 8016) replace: Scholtzia sp. Eradu (R.D.Royce 8016) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eurardy (J.S. Beard 6886) replace: Scholtzia sp. Eurardy (J.S.Beard 6886) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Folly Hill (M.E. Trudgen 12097) replace: Scholtzia sp. Folly Hill (M.E.Trudgen 12097) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Galena (W.E. Blackall 4728) replace: Scholtzia sp. Galena (W.E.Blackall 4728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Geraldton (F. Lullfitz L 3216) replace: Scholtzia sp. Geraldton (F.Lullfitz L 3216) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Gunyidi (J.D. Briggs 1721) replace: Scholtzia sp. Gunyidi (J.D.Briggs 1721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kalbarri (N. Hoyle 623) replace: Scholtzia sp. Kalbarri (N.Hoyle 623) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kojarena (A.M. Ashby 1904) replace: Scholtzia sp. Kojarena (A.M.Ashby 1904) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Murchison River (A.S. George 7098) replace: Scholtzia sp. Murchison River (A.S.George 7908) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Northampton (A. Strid 20714) replace: Scholtzia sp. Northampton (A.Strid 20174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Prowaka Springs (R.J. Cranfield & P. Spencer 8083) replace: Scholtzia sp. Prowaka Springs (R.J.Cranfield & P.Spencer RJC 8083) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Red Bluff (A. Gunness 2373) replace: Scholtzia sp. Red Bluff (A.Gunness 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ross Graham Lookout (S. Maley 6) replace: Scholtzia sp. Ross Graham Lookout (S.Maley 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Shark Bay (M.E. Trudgen 7429) replace: Scholtzia sp. Shark Bay (M.E.Trudgen 7429) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S. Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S.J.Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Whelarra (M.E. Trudgen 12018) replace: Scholtzia sp. Whelarra (M.E.Trudgen 12018) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Yandanooka (R. Soullier 646) replace: Scholtzia sp. Yandanooka (R.Soullier 646) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. B Kimberley Flora (C.R. Dunlop 5409) replace: Scleria sp. B Kimberley Flora (C.R.Dunlop 5409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. C Kimberley Flora (K.F. Kenneally 4873) replace: Scleria sp. C Kimberley Flora (K.F.Kenneally 4873) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena xgeorgei replace: Sclerolaena georgei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xartemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xcoriacea replace: Senna artemisioides subsp. x coriacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xsturtii replace: Senna artemisioides subsp. x sturtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa subsp. xluerssenii replace: Senna glutinosa subsp. x luerssenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sp. Austin (A. Strid 20210) replace: Senna sp. Austin (A.Strid 20210) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Billabong (J.D. Alonzo 721) replace: Senna sp. Billabong (J.D.Alonzo 721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Karijini (M.E. Trudgen 10392) replace: Senna sp. Karijini (M.E.Trudgen 10392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Meekatharra (E. Bailey 1-26) replace: Senna sp. Meekatharra (E.Bailey 1-26) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Tamala (M.E. Trudgen 7334A) replace: Senna sp. Tamala (M.E.Trudgen 7334A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. A Kimberley Flora (P.A. Fryxell & L.A. Craven 3900) replace: Sida sp. A Kimberley Flora (P.A.Fryxell & L.A.Craven 3900) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Articulation below (A.A. Mitchell PRP 1605) replace: Sida sp. Articulation below (A.A.Mitchell PRP1605) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Barlee Range (S. van Leeuwen 1642) replace: Sida sp. Barlee Range (S.van Leeuwen 1642) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bungle Bungles (M.I. Blackwell 219) replace: Sida sp. Bungle Bungles (M.I.Blackwell 219) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C Kimberley Flora (T.E.H. Aplin 4982) replace: Sida sp. C Kimberley Flora (T.E.H.Aplin 4982) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Carnarvon (P.S. Short 2492) replace: Sida sp. Carnarvon (P.S.Short 2492) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. dark green fruits (S. van Leeuwen 2260) - replace: Sida sp. dark green fruits (S.van Leeuwen 2260) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Excedentifolia (J.L. Egan 1925) replace: Sida sp. Excedentifolia (J.L.Egan 1925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces glabrous (H.N. Foote 32) replace: Sida sp. golden calyces glabrous (H.N.Foote 32) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces pubescent (G.J. Leach 1966) replace: Sida sp. Golden calyces pubescent (G.J.Leach 1966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hamersley Range (K. Newbey 10692) replace: Sida sp. Hamersley Range (K.Newbey 10692) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. L (A.M. Ashby 4202) replace: Sida sp. L (A.M.Ashby 4202) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (A.A. Mitchell PRP 1543) replace: Sida sp. Pilbara (A.A.Mitchell PRP1543) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pindar (A. Mitchell 3585) replace: Sida sp. Pindar (A.A.Mitchell 3585) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat (B.J. Carter 626) replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) - replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Shovelanna Hill (S. van Leeuwen 3842) replace: Sida sp. Shovelanna Hill (S.van Leeuwen 3842) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. Supplejack Station (T.S. Henshall 2345) + replace: Sida sp. Supplejack Station (T.S.Henshall 2345) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Watarrka (D.E. Albrecht 8672) + replace: Sida sp. Watarrka (D.E.Albrecht 8672) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Western sand dunes (P.K. Latz 11980) + replace: Sida sp. Western sand dunes (P.K.Latz 11980) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. dark green fruits (S. van Leeuwen 2260) + replace: Sida sp. dark green fruits (S.van Leeuwen 2260) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) + replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/1990) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/90) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Supplejack Station (T.S. Henshall 2345) - replace: Sida sp. Supplejack Station (T.S.Henshall 2345) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. tiny glabrous fruit (A.A. Mitchell PRP1152) replace: Sida sp. tiny glabrous fruit (A.A.Mitchell PRP1152) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. verrucose glands (F.H. Mollemans 2423) replace: Sida sp. verrucose glands (F.H.Mollemans 2423) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Watarrka (D.E. Albrecht 8672) - replace: Sida sp. Watarrka (D.E.Albrecht 8672) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Western sand dunes (P.K. Latz 11980) - replace: Sida sp. Western sand dunes (P.K.Latz 11980) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp. Boomerang Bay (K.F. Kenneally 10021) replace: Solanum sp. Boomerang Bay (K.F.Kenneally 10021) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum xalmum replace: Sorghum x almum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spergularia sp. 5 Leeman (G.J. Keighery & J.J. Alford 488) replace: Spergularia sp. 5 Leeman (G.J.Keighery & J.J.Alford 488) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphenotoma sp. Stirling Range (P.G. Wilson 4235) replace: Sphenotoma sp. Stirling Range (P.G.Wilson 4235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spinifex xalterniflorus replace: Spinifex x alterniflorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia sp. swollen gynophore (W.R. Barker 2041) replace: Stackhousia sp. Swollen gynophore (W.R.Barker 2041) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Battle Hill (A.L. Payne 1006) replace: Stemodia sp. Battle Hill (A.L.Payne 1006) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Onslow (A.A. Mitchell 76/148) replace: Stemodia sp. Onslow (A.A.Mitchell 76/148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium egralliforme replace: Stylidium egralliforme MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Bindoon (K.F. Kenneally 11405) replace: Stylidium sp. Bindoon (K.F.Kenneally 11405) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Boulder Rock (A.H. Burbidge 2536) replace: Stylidium sp. Boulder Rock (A.H.Burbidge 2536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Dewars Pool (K.F. Kenneally 11400) replace: Stylidium sp. Dewars Pool (K.F.Kenneally 11400) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker (E.J. Croxford 1906) replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Hamersley Station (A.A. Mitchell 196) replace: Swainsona sp. Hamersley Station (A.A.Mitchell 196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Shark Bay (M.E. Trudgen 7588) replace: Swainsona sp. Shark Bay (M.E.Trudgen 7588) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Fairbridge Farm (D. Papenfus 696) replace: Synaphea sp. Fairbridge Farm (D.Papenfus 696) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Jilakin Flat Rocks Rd (R. Butcher et. al RB200) replace: Synaphea sp. Jilakin Flat Rocks Rd (R.Butcher et al. RB200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Kwornicup (D. Trenowden 429) replace: Synaphea sp. [Synaphea sp. Kwornicup (D.Trenowden 429); WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3811,445 +3813,445 @@ taxonomic_updates: - find: Synaphea sp. Pinjarra (R. Davis 6578) replace: Synaphea sp. Pinjarra (R.Davis 6578) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Redgate Road (J. Scott 16) replace: Synaphea sp. Redgate Road (J.Scott 16) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia mellaria replace: Tecticornia mellarium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Gunyidi (M.N. Lyons 2607) replace: Tecticornia sp. Gunyidi (M.N.Lyons 2607) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Roy Hill (H. Pringle 62) replace: Tecticornia sp. Roy Hill (H.Pringle 62) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Tephrosia rosea var. glabrior - replace: Tephrosia rosea var. glabrior MS - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Tephrosia rosea var. Napier Range replace: Tephrosia rosea var. Napier Range (C.R.Dunlop 7760 & B.K.Simon) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Tephrosia rosea var. glabrior + replace: Tephrosia rosea var. glabrior MS + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: varietas - find: Tephrosia rosea var. venulosa replace: Tephrosia rosea var. venulosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia sp. B Kimberley Flora (C.A. Gardner 7300) replace: Tephrosia sp. B Kimberley Flora (C.A.Gardner 7300) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Bungaroo Creek (M.E. Trudgen 11601) replace: Tephrosia sp. Bungaroo Creek (M.E.Trudgen 11601) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. C Kimberley Flora (K.F. Kenneally 5599) replace: Tephrosia sp. C Kimberley Flora (K.F.Kenneally 5599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Carnarvon (J.H. Ross 2681) replace: Tephrosia sp. Carnarvon (J.H.Ross 2681) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Cathedral Gorge (F.H. Mollemans 2420) replace: Tephrosia sp. Cathedral Gorge (F.H.Mollemans 2420) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Central (P.K. Latz 17037) replace: Tephrosia sp. Central (P.K.Latz 17037) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) - replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. D Kimberley Flora (R.D. Royce 1848) replace: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. deserts (J.R. Maconochie 1403) - replace: Tephrosia sp. deserts (J.R.Maconochie 1403) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Dunes (J.R. Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Durack River (C.A. Gardner 9938) replace: Tephrosia sp. Durack River (C.A.Gardner 9938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. E Kimberley Flora (C.A. Gardner 9937) replace: Tephrosia sp. E Kimberley Flora (C.A.Gardner 9937) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. F Kimberley Flora (B.R. Maslin 5139) replace: Tephrosia sp. F Kimberley Flora (B.R.Maslin 5139) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. G Kimberley Flora (G.J. Keighery 4828) replace: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kennedy Range (J.S. Beard 4392) replace: Tephrosia sp. Kennedy Range (J.S.Beard 4392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kununurra (T. Handasyde TH00 250) replace: Tephrosia sp. Kununurra (T.Handesyde TH00 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Magazine Hill (P. Jones 365) replace: Tephrosia sp. Magazine Hill (P.Jones 365) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Mistake Creek (A.C. Beauglehole 54424) replace: Tephrosia sp. Mistake Creek (A.C.Beauglehole 54424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) + replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tephrosia sp. Newman (A.A. Mitchell PRP 29) replace: Tephrosia sp. Newman (A.A.Mitchell PRP 29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Northern (K.F. Kenneally 11950) replace: Tephrosia sp. Northern (K.F.Kenneally 11950) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) - replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Onslow (K.R. Newbey 10571) replace: Tephrosia sp. Onslow (K.R.Newbey 10571) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Pentecost River (I.D. Cowie 4168) replace: Tephrosia sp. Pentecost River (I.D.Cowie 4168) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Saw Ranges (D. Kabay s.n. PERTH 06720544) replace: Tephrosia sp. Saw Ranges (D.Kabay s.n. PERTH 06720544) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) - replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Willowra (G.M. Chippendale 4809) replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) + replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. deserts (J.R. Maconochie 1403) + replace: Tephrosia sp. deserts (J.R.Maconochie 1403) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) + replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tetratheca sp. Granite (S. Patrick SP1224) replace: Tetratheca sp. Granite (S.Patrick SP1224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Kent River (B.G. Hammersley 1791) replace: Tetratheca sp. Kent River (B.G.Hammersley 1791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Mt Solus (F. Obbens 307/98) replace: Tetratheca sp. Mt Solus (F.Obbens 307/98) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Balladonia (K.R. Newbey 7380) replace: Teucrium sp. Balladonia (K.R.Newbey 7380) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Teucrium sp. dwarf (R. Davis 8813) - replace: Teucrium sp. dwarf (R.Davis 8813) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Norseman (T.E.H. Aplin 1851) replace: Teucrium sp. Norseman (T.E.H.Aplin 1851) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Sturt Creek (A.A. Mitchell 5536) replace: Teucrium sp. Sturt Creek (A.A.Mitchell 5536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Teucrium sp. dwarf (R. Davis 8813) + replace: Teucrium sp. dwarf (R.Davis 8813) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Thelymitra sp. Brookton (A.S. George 11631) replace: Thelymitra sp. Brookton (A.S.George 11631) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Esperance (N.S. Lander 1080) replace: Thelymitra sp. Esperance (N.S.Lander 1080) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Slender Sun Orchid (A.R. Annels 2884) replace: Thelymitra sp. Slender Sun Orchid (A.R.Annels 2884) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Hamersley Station (M.E. Trudgen 11431) replace: Themeda sp. Hamersley Station (M.E.Trudgen 11431) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Mt Barricade (M.E. Trudgen 2471) replace: Themeda sp. Mt Barricade (M.E.Trudgen 2471) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Arthur River (H.F. & M. Broadbent 1409) replace: Thomasia sp. Arthur River (H.F. & M.Broadbent 1409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Big Brook (M. Koch 2373) replace: Thomasia sp. Big Brook (M.Koch 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Gingin (F. & J. Hort 1511) replace: Thomasia sp. Gingin (F. & J.Hort 1511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Green Hill (S. Paust 1322) replace: Thomasia sp. Green Hill (S.Paust 1322) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Lesueur (M. Hislop 4217) replace: Thomasia sp. Lesueur (M.Hislop 4217) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Merredin (M.B. Mills 11) replace: Thomasia sp. Merredin (M.B.Mills 11) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Salmon Gums (C.A. Gardner s.n. PERTH 02708639) replace: Thomasia sp. Salmon Gums (C.A.Gardner s.n. PERTH 02708639) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Toolbrunup (G.J. Keighery 9895) replace: Thomasia sp. Toolbrunup (G.J.Keighery 9895) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Vasse (C. Wilkins & K. Shepherd CW 581) replace: Thomasia sp. Vasse (C.Wilkins & K.Shepherd CW581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia xformosa replace: Thomasia x formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene glaucosa replace: Thryptomene glaucosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Carrarang (M.E. Trudgen 7420) replace: Thryptomene sp. Carrarang (M.E.Trudgen 7420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eagle Gorge (A.G. Gunness 2360) replace: Thryptomene sp. Eagle Gorge (A.G.Gunness 2360) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. East Yuna (J.W. Green 4639) replace: Thryptomene sp. East Yuna (J.W.Green 4639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eneabba (R.J. Cranfield 8433) replace: Thryptomene sp. Eneabba (R.J.Cranfield 8433) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eurardy (D. & B. Bellairs 1649) replace: Thryptomene sp. Eurardy (D. & B.Bellairs 1649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Geraldton (H. Demarz 5145) replace: Thryptomene sp. Geraldton (H.Demarz 5145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Lancelin (M.E. Trudgen 14000) replace: Thryptomene sp. Lancelin (M.E.Trudgen 14000) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Moresby Range (A.S. George 14873) replace: Thryptomene sp. Moresby Range (A.S.George 14873) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Steep Point (M.E. Trudgen 7421) replace: Thryptomene sp. Steep Point (M.E.Trudgen 7421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Tamala (M.E. Trudgen 7384) replace: Thryptomene sp. Tamala (M.E.Trudgen 7384) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Yuna Reserve (A.C. Burns 100) replace: Thryptomene sp. Yuna Reserve (A.C.Burns 100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Badgingarra (E.A. Griffin 2511) replace: Thysanotus sp. Badgingarra (E.A.Griffin 2511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Desert East of Newman (R.P. Hart 964) replace: Thysanotus sp. Desert East of Newman (R.P.Hart 964) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Eremaean (S. van Leeuwen 1067) replace: Thysanotus sp. Eremaean (S.van Leeuwen 1067) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Great Victoria Desert (A.S. George 8406) replace: Thysanotus sp. Great Victoria Desert (A.S.George 8406) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Kalbarri (D. & B. Bellairs 1523 A) replace: Thysanotus sp. Kalbarri (D. & B.Bellairs 1523 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Twining Wheatbelt (N.H. Brittan 81/29) replace: Thysanotus sp. Twining Wheatbelt (N.H.Brittan 81/29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema oxycalyptra var. oxycalyptra replace: Trianthema oxycalyptrum var. oxycalyptrum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tribonanthes sp. Lake Muir (G.J. Keighery & N. Gibson 2134) replace: Tribonanthes sp. Lake Muir (G.J.Keighery & N.Gibson 2134) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Koolan Island (K.F. Kenneally 8278) replace: Tribulopis sp. Koolan Island (K.F.Kenneally 8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Mitchell Plateau (K.F. Kenneally 7935) replace: Tribulopis sp. Mitchell Plateau (K.F.Kenneally 7935) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. long-styled eichlerianus (A.S. George 10666) replace: Tribulus sp. long-styled eichlerianus (A.S.George 10666) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium exile replace: Trichanthodium exilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichocline sp. Treeton (B.J. Keighery & N. Gibson 564) replace: Trichocline sp. Treeton (B.J.Keighery & N.Gibson 564) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Geraldton (G.J. Keighery 10461) replace: Tricoryne sp. Geraldton (G.J.Keighery 10461) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Kimberley (K.F. Kenneally 4857) replace: Tricoryne sp. Kimberley (K.F.Kenneally 4857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Morawa (G.J. Keighery & N. Gibson 6759) replace: Tricoryne sp. Morawa (G.J.Keighery & N.Gibson 6759) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Mullewa (G.J. Keighery 12080) replace: Tricoryne sp. Mullewa (G.J.Keighery 12080) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. South Coast (T.E.H. Aplin 2653) replace: Tricoryne sp. South Coast (T.E.H.Aplin 2653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Wongan Hills (B.H. Smith 794) replace: Tricoryne sp. Wongan Hills (B.H.Smith 794) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. A Flora of Australia (G.J. Keighery 2477) replace: Triglochin sp. A Flora of Australia (G.J.Keighery 2477) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. B Flora of Australia (P.G. Wilson 4294) replace: Triglochin sp. B Flora of Australia (P.G.Wilson 4294) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. C Flora of Australia (P.G. Wilson 8811) replace: Triglochin sp. C Flora of Australia (P.G.Wilson 8811) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Mt Ella (M.E. Trudgen 12739) replace: Triodia sp. Mt Ella (M.E.Trudgen 12739) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Adolphus Island (K.F. Kenneally 11898) replace: Triumfetta sp. Adolphus Island (KF.Kenneally 11898) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Mt Bomford (M.D. Barrett MDB 1001) replace: Triumfetta sp. Mt Bomford (M.D.Barrett MDB 1001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Kununurra (A.N. Start ANS 1467) replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Galena (G.J. Keighery 14733) replace: Urodon sp. Galena (G.L.Keighery 14733) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Narkal (B.H. Smith 1440) replace: Urodon sp. Narkal (B.H.Smith 1440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia serrata var. Udumung replace: Verticordia serrata var. Udumung (D.Hunter & B.Yarran 941006) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Verticordia xeurardyensis replace: Verticordia x eurardyensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. Hamersley Clay (A.A. Mitchell PRP 113) replace: Vigna sp. Hamersley Clay (A.A.Mitchell PRP 113) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. northern pubescent (A.A. Mitchell 3667) replace: Vigna sp. northern pubescent (A.A.Mitchell 3667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia sp. A Kimberley Flora (R.J. Cranfield 6527) replace: Vittadinia sp. A Kimberley Flora (R.J.Cranfield 6527) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia preissii de replace: Wahlenbergia preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia sp. Hamersley (A.S. Weston 8444) replace: Wedelia sp. Hamersley (A.S.Weston 8444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Cranbrook (A.R. Annels 3819) replace: Wurmbea sp. Cranbrook (A.R.Annels 3819) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Great Victoria Desert (G.J. Keighery 7501) replace: Wurmbea sp. Great Victoria Desert (G.J.Keighery 7501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosia sp. Dardanup (B.J. Keighery & N. Gibson 174) replace: Xanthosia sp. Dardanup (B.J.Keighery & N.Gibson 174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. West Kimberley (C.A. Gardner 9942) replace: Zornia sp. West Kimberley (C.A.Gardner 9942) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/WAH_2022_2/metadata.yml b/data/WAH_2022_2/metadata.yml index c541f53e0..e003e4609 100644 --- a/data/WAH_2022_2/metadata.yml +++ b/data/WAH_2022_2/metadata.yml @@ -4,8 +4,8 @@ source: bibtype: Online year: 2022 author: '{Western Australian Herbarium}' - title: Florabase—the Western Australian Flora. - publisher: Department of Biodiversity, Conservation and Attractions. + title: Florabase—the Western Australian Flora. + publisher: Department of Biodiversity, Conservation and Attractions. url: https://florabase.dpaw.wa.gov.au/ note: accessed on 14 September, 2022. contributors: @@ -56,7 +56,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% group_by(taxon_name) %>% @@ -177,296 +177,288 @@ taxonomic_updates: replace: Abutilon dioicum MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Cape Range (A.S. George 1312) replace: Abutilon sp. Cape Range (A.S.George 1312) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Dioicum (A.A. Mitchell PRP 1618) replace: Abutilon sp. Dioicum (A.A.Mitchell PRP 1618) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Hamelin (A.M. Ashby 2196) replace: Abutilon sp. Hamelin (A.M.Ashby 2196) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F. Smith s.n. 10/9/61) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Pilbara (W.R. Barker 2025) replace: Abutilon sp. Pilbara (W.R.Barker 2025) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Quobba (H. Demarz 3858) replace: Abutilon sp. Quobba (H.Demarz 3858) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Warburton (A.S. George 8164) replace: Abutilon sp. Warburton (A.S.George 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia drummondii subsp. elegans Porongurup variant replace: Acacia drummondii subsp. elegans Porongurup variant (R.J.Cumming 938) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia eremophila var. Numerous-nerved variant replace: Acacia eremophila var. Numerous-nerved variant (A.S.George 11924) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. bracteolata long peduncle variant replace: Acacia lasiocarpa var. bracteolata Long Peduncle variant (G.J.Keighery 5026) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant replace: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant (E.A.Griffin 2039) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lateriticola var. Glabrous variant replace: Acacia lateriticola var. Glabrous variant (B.R.Maslin 6765) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia leioderma var. Fitzgerald River N.P. variant replace: Acacia leioderma var. Fitzgerald River N.P. variant (A.S.George 9922) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mutabilis subsp. Young River replace: Acacia mutabilis subsp. Young River (G.F.Craig 2052) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia pulchella var. reflexa acuminate bracteole variant replace: Acacia pulchella var. reflexa Acuminate bracteole variant (R.J.Cumming 882) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia saligna subsp. saligna replace: Acacia saligna reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Barklys (J.L. Egan 124) replace: Acacia sp. Barklys (J.L.Egan 124) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Broome (B.R. Maslin 4918) replace: Acacia sp. Broome (B.R.Maslin 4918) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Bungalbin Hill (J.J. Alford 1119) replace: Acacia sp. Bungalbin Hill (J.J.Alford 1119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R.Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R. Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S.Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S. Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Carson River (M. McDonald MM1890) replace: Acacia sp. Carson River (M.McDonald MM1890) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cockburn Range (R. Pullen 10.763) replace: Acacia sp. Cockburn Range (R.Pullen 10.763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Edgar Range (S.D. Hopper 1763) replace: Acacia sp. Edgar Range (S.D.Hopper 1763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Esperance (M.A. Burgman 1833b) replace: Acacia sp. Esperance (M.A.Burgman 1833b) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. F Kimberley Flora (J.J. Alford 557) replace: Acacia sp. F Kimberley Flora (J.J.Alford 557) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Goodlands (B.R. Maslin 7761) replace: Acacia sp. Goodlands (B.R.Maslin 7761) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Jimblebar (S. van Leeuwen 1342) replace: Acacia sp. Jimblebar (S.van Leeuwen 1342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7571) replace: Acacia sp. Kalannie (B.R.Maslin 7571) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7706) replace: Acacia sp. Kalannie (B.R.Maslin 7706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North (B.R. Maslin 7702) replace: Acacia sp. Kalannie North (B.R.Maslin 7702) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North East (B.R. Maslin 7519) replace: Acacia sp. Kalannie North East (B.R.Maslin 7519) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kulin (S. Murray 504) replace: Acacia sp. Kulin (S.Murray 504) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kununurra (Lullfitz 6195) replace: Acacia sp. Kununurra (G.Lullfitz 6195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake King (R. Hnatiuk 760791) replace: Acacia sp. Lake King (R.Hnatiuk 760791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Little Sandy Desert (A.S. Mitchell 591) replace: Acacia sp. Little Sandy Desert (A.S.Mitchell 591) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Manmanning (B.R. Maslin 7711) replace: Acacia sp. Manmanning (B.R.Maslin 7711) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Marble Bar (J.G. & M.H. Simmons 3499) replace: Acacia sp. Marble Bar (J.G. & M.H.Simmons 3499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Minnie Creek (B.R. Maslin 5217) replace: Acacia sp. Minnie Creek (B.R.Maslin 5217) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Moorine Rock (B.R. Maslin 4474) replace: Acacia sp. Moorine Rock (B.R.Maslin 4474) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Augustus (S.D. Hopper 3181) replace: Acacia sp. Mt Augustus (S.D.Hopper 3181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Jackson (B. Ryan 176) replace: Acacia sp. Mt Jackson (B.Ryan 176) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Muggon Station (S. Patrick & D. Edinger SP 3235) replace: Acacia sp. Muggon Station (S.Patrick & D.Edinger SP3235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mullewa (B.R. Maslin 4269) replace: Acacia sp. Mullewa (B.R.Maslin 4269) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) - replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. New Norcia (E.A. Griffin 5917) replace: Acacia sp. New Norcia (E.A.Griffin 5917) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Norseman (B. Archer 1554) replace: Acacia sp. Norseman (B.Archer 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Nullagine (B.R. Maslin 4955) replace: Acacia sp. Nullagine (B.R.Maslin 4955) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P174 (J.M. Brown 228) replace: Acacia sp. P174 (J.M.Brown 228) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P176 (B.R. Maslin 5831) replace: Acacia sp. P176 (B.R.Maslin 5831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P19 (A.A. Mitchell 231) replace: Acacia sp. P19 (A.A.Mitchell 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P69 (W.E. Blackall 3754) replace: Acacia sp. P69 (W.E.Blackall 3754) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P94 (J.S. Beard 6178) replace: Acacia sp. P94 (J.S.Beard 6178) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Peak Hill (R. Gibson 0003) replace: Acacia sp. Peak Hill (R.Gibson 0003) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Petrudor Rocks (B.R. Maslin 7714) replace: Acacia sp. Petrudor Rocks (B.R.Maslin 7714) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe (R.S. Cowan & B.R. Maslin RSC A-760) replace: Acacia sp. Ravensthorpe (R.S.Cowan & B.R.Maslin RSC A-760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe Range (B.R. Maslin 5463) replace: Acacia sp. Ravensthorpe Range (B.R.Maslin 5463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Riddell Beach (T. Willing 71) replace: Acacia sp. Riddell Beach (T.Willing 71) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Rudall River (B.R. Maslin 2237) replace: Acacia sp. Rudall River (B.R.Maslin 2237) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Shark Bay (B.R. Maslin 3682) replace: Acacia sp. Shark Bay (B.R.Maslin 3682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. small seed (B.R. Maslin 7830) - replace: Acacia sp. Small seed (B.R.Maslin 7830) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Trent River (K.F. Kenneally 11701) - replace: Acacia sp. Trent River (K.F.Kenneally 11701) + replace: Acacia sp. Trent River (K.F.Kenneally 11701) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Weld Range (A. Markey & S. Dillon 2994) replace: Acacia sp. Weld Range (A.Markey & S.Dillon 2994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wiluna (B.R. Maslin 7090) replace: Acacia sp. Wiluna (B.R.Maslin 7090) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Windy Corner (P.K. Latz 17865) replace: Acacia sp. Windy Corner (P.K.Latz 17865) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wongawol (I. Kealley IEK 015) replace: Acacia sp. [Acacia sp. Wongawol (I. Kealley IEK 015)] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -475,657 +467,675 @@ taxonomic_updates: - find: Acacia sp. Wren Creek Crossing (K.F. Kenneally 11853) replace: Acacia sp. Wren Creek Crossing (K.F.Kenneally 11853) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) + replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Acacia sp. small seed (B.R. Maslin 7830) + replace: Acacia sp. Small seed (B.R.Maslin 7830) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. A Kimberley Flora (C.R. Dunlop 5303) replace: Actinoschoenus sp. A Kimberley Flora (C.R.Dunlop 5303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. B Kimberley Flora (G.J. Keighery 2649) replace: Actinoschoenus sp. B Kimberley Flora (G.J.Keighery 2649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. C Kimberley Flora (P.G. Wilson s.n. 12/5/72) replace: Actinoschoenus sp. C Kimberley Flora (P.G.Wilson s.n. 12/5/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. D Kimberley Flora (K.F. Kenneally 4789) replace: Actinoschoenus sp. D Kimberley Flora (K.F.Kenneally 4789) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. E Kimberley Flora (C.R. Dunlop 5309) replace: Actinoschoenus sp. E Kimberley Flora (C.R.Dunlop 5309) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Comet Vale (A.V. Milewski AVM 1093) replace: Actinotus sp. Comet Vale (A.V.Milewski AVM1093) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Walpole (J.R. Wheeler 3786) replace: Actinotus sp. Walpole (J.R.Wheeler 3786) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos barbiger subsp. barbiger replace: Adenanthos barbiger reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos xcunninghamii replace: Adenanthos x cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos xpamela replace: Adenanthos x pamela reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera longipes replace: Alternanthera longipes reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angulata replace: Alyogyne angulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angustiloba replace: Alyogyne angustiloba MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne coronopifolia replace: Alyogyne coronopifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne huegelii var. huegelii replace: Alyogyne huegelii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne purpurea replace: Alyogyne purpurea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne pyrrhophila replace: Alyogyne pyrrhophila MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Geraldton (R. Davis 3487) replace: Alyogyne sp. Geraldton (R.Davis 3487) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Great Victoria Desert (D.J. Edinger 6212) replace: Alyogyne sp. Great Victoria Desert (D.J.Edinger 6212) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hutt River (B.J. Lepschi & T.R. Lally 2310) replace: Alyogyne sp. Hutt River (B.J.Lepschi & T.R.Lally 2310) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S. Durell GD 127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S.Durrell GD127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Rockingham (G.J. Keighery 14463) replace: Alyogyne sp. Rockingham (G.J.Keighery 14463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne wrayae replace: Alyogyne wrayae MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus sp. A Kimberley Flora (C.A. Gardner s.n. PERTH 00326518) replace: Amaranthus sp. A Kimberley Flora (C.A.Gardner s.n. PERTH 00326518) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. Fortescue (M.E. Trudgen 5358) replace: Amyema sp. Fortescue (M.E.Trudgen 5358) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anacampseros sp. Eremaean (F. Hort, J. Hort & J. Shanks 3248) replace: Anacampseros sp. Eremaean (F.Hort, J.Hort & J.Shanks 3248) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia caerulea subsp. caerulea replace: Andersonia caerulea var. caerulea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Andersonia fallax replace: Andersonia fallax MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia jamesii replace: Andersonia jamesii MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Frankland (W. Jackson BJ8) replace: Andersonia sp. Frankland (W.Jackson BJ8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Lower King (N. Hoyle 1500) replace: Andersonia sp. Lower King (N.Hoyle 1500) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Mitchell River (B.G. Hammersley 925) replace: Andersonia sp. Mitchell River (B.G.Hammersley 925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthos humilis subsp. Badgingarra replace: Anigozanthos humilis subsp. Badgingarra (S.D.Hopper 7114) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anigozanthos manglesii var. xangustifolius replace: Anigozanthos manglesii var. x angustifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Anigozanthos viridis subsp. Cataby replace: Anigozanthos viridis subsp. Cataby (S.D.Hopper 1786) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anthocercis sp. Shark Bay (T.E.H. Aplin 3335) replace: Anthocercis sp. Shark Bay (T.E.H.Aplin 3335) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Darling Range (F. Hort & B. Hort 2431) replace: Anthotium sp. Darling Range (F.Hort & B.Hort 2431) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Peaceful Bay (J.R. Wheeler 3772 & S.J. Patrick) replace: Anthotium sp. Peaceful Bay (J.R.Wheeler 3772 & S.J.Patrick) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Cunderdin (B.J. Lepschi et al. 3587) replace: Aotus sp. Cunderdin (B.J.Lepschi et al. 3587) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Dundas (M.A. Burgman 2835) replace: Aotus sp. Dundas (M.A.Burgman 2835) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Apium prostratum subsp. prostratum var. filiforme replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum subsp. prostratum var. prostratum replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Asparagopsis taxiformis replace: Asparagopsis sp. [Asparagopsis taxiformis; WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI (2022-11-22) taxonomic_resolution: genus -- find: Astartea sp. big bracteoles (A.R. Annels 995) - replace: Astartea sp. big bracteoles (A.R.Annels 995) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species - find: Astartea sp. Bungalbin Hill (K.R. Newbey 8989) replace: Astartea sp. Bungalbin Hill (K.R.Newbey 8989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Esperance (A. Fairall 2431) replace: Astartea sp. Esperance (A.Fairall 2431) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Fitzgerald (K.R. Newbey 10844) replace: Astartea sp. Fitzgerald (K.R.Newbey 10844) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Gingalup (N. Gibson & M. Lyons 119) replace: Astartea sp. Gingalup (N.Gibson & M.Lyons 119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Hopetoun area (A.S. George 10594) replace: Astartea sp. Hopetoun area (A.S.George 10594) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jerdacuttup (A. Strid 21898) replace: Astartea sp. Jerdacuttup (A.Strid 21898) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jyndabinbin Rocks (K.R. Newbey 7689) replace: Astartea sp. Jyndabinbin Rocks (K.R.Newbey 7689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. long stalks (D. Foreman 1490) - replace: Astartea sp. long stalks (D.Foreman 1490) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Dimer (C. McChesney TRL4/72) replace: Astartea sp. Mt Dimer (C.McChesney TRL4/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Johnston (A.R. Annels 5645) replace: Astartea sp. Mt Johnston (A.R.Annels 5645) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Red Hill (K.R. Newbey 8462) replace: Astartea sp. Red Hill (K.R.Newbey 8462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Scott River (D. Backshall 88233) replace: Astartea sp. Scott River (D.Backshall 88233) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astartea sp. big bracteoles (A.R. Annels 995) + replace: Astartea sp. big bracteoles (A.R.Annels 995) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Astartea sp. long stalks (D. Foreman 1490) + replace: Astartea sp. long stalks (D.Foreman 1490) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Asterolasia sp. Kalgan River (S. Barrett 1522) replace: Asterolasia sp. Kalgan River (S.Barrett 1522) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Cataby (E.A. Griffin 1022) replace: Astroloma sp. Cataby (E.A.Griffin 1022) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Grass Patch (A.J.G. Wilson 110) replace: Astroloma sp. Grass Patch (A.J.G.Wilson 110) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Nannup (R.D. Royce 3978) replace: Astroloma sp. Nannup (R.D.Royce 3978) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astroloma sp. sessile leaf (J.L. Robson 657) - replace: Astroloma sp. sessile leaf (J.L.Robson 657) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Tutanning (A.S. George 7779) replace: Astroloma sp. Tutanning (A.S.George 7779) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astroloma sp. sessile leaf (J.L. Robson 657) + replace: Astroloma sp. sessile leaf (J.L.Robson 657) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Atriplex sp. De Grey (A.A. Mitchell PRP1940) replace: Atriplex sp. De Grey (A.A.Mitchell PRP1940) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos errabundus var. errabundus replace: Austrodolichos errabundus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos erubescens replace: Austrodolichos erubescens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea crispiflora subsp. Corrigin replace: Baeckea crispiflora subsp. Corrigin (A.S.George 14431) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Kulin replace: Baeckea crispiflora subsp. Kulin (R.Hnatiuk 780026) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Ongerup replace: Baeckea crispiflora subsp. Ongerup (A.Scougall & C.Garawanta E35) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea sp. Baladjie (P.J. Spencer 24) replace: Baeckea sp. Baladjie (P.J.Spencer 24) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bencubbin-Koorda (M.E. Trudgen 5421) replace: Baeckea sp. Bencubbin-Koorda (M.E.Trudgen 5421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Beringbooding (A.R. Main 11/9/1957) replace: Baeckea sp. Beringbooding (A.R.Main 11/9/1957) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Billeranga Hills (M.E. Trudgen 2206) replace: Baeckea sp. Billeranga Hills (M.E.Trudgen 2206) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bulla Bulling (D.J.E. Whibley 4648) replace: Baeckea sp. Bulla Bulling (D.J.E.Whibley 4648) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bungalbin Hill (B.J. Lepschi & L.A. Craven 4586) replace: Baeckea sp. Bungalbin Hill (B.J.Lepschi & L.A.Craven 4586) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunjil (B.R. Maslin 5067) replace: Baeckea sp. Bunjil (B.R.Maslin 5067) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunney Road (S. Patrick 4059) replace: Baeckea sp. Bunney Road (S.Patrick 4059) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Calingiri (F. Hort 1710) replace: Baeckea sp. Calingiri (F.Hort 1710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Chittering (R.J. Cranfield 1983) replace: Baeckea sp. Chittering (R.J.Cranfield 1983) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Darling Range (R.J. Cranfield 1673) replace: Baeckea sp. Darling Range (R.J.Cranfield 1673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Die Hardy Range (E. Mattiske J91) replace: Baeckea sp. Die Hardy Range (E.Mattiske J91) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. East Yuna (R. Spjut & C. Edson 7077) replace: Baeckea sp. East Yuna (R.Spjut & C.Edson 7077) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Elsewhere Road (M.E. Trudgen 5420) replace: Baeckea sp. Elsewhere Road (M.E.Trudgen 5420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Eujinyn (J. Buegge D 99) replace: Baeckea sp. Eujinyn (J.Buegge D99) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Exclamation Lake (M.E. Trudgen 1524) replace: Baeckea sp. Exclamation Lake (M.E.Trudgen 1524) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Forrestania (K.R. Newbey 1105) replace: Baeckea sp. Forrestania (K.R.Newbey 1105) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Gibson (K.R. Newbey 11084) replace: Baeckea sp. Gibson (K.R.Newbey 11084) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Great Victoria Desert (A.S. Weston 14813) replace: Baeckea sp. Great Victoria Desert (A.S.Weston 14813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hatter Hill (K.R. Newbey 3284) replace: Baeckea sp. Hatter Hill (K.R.Newbey 3284) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena & Aurora Range (G.J.Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena and Aurora Range (G.J. Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hyden (J.M. Brown 141) replace: Baeckea sp. Hyden (J.M.Brown 141) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Jaurdi Station (L.W. Sage & F. Hort 2229) replace: Baeckea sp. Jaurdi Station (L.W.Sage & F.Hort 2229) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Koorda (W.E. Blackall 3371) replace: Baeckea sp. Koorda (W.E.Blackall 3371) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Lake Cronin (K.R. Newbey 9191) replace: Baeckea sp. Lake Cronin (K.R.Newbey 9191) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. London Bridge (M.E. Trudgen 5393) replace: Baeckea sp. London Bridge (M.E.Trudgen 5393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Melita Station (H. Pringle 2738) replace: Baeckea sp. Melita Station (H.Pringle 2738) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Merredin (K.R. Newbey 2506) replace: Baeckea sp. Merredin (K.R.Newbey 2506) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mingenew (M.E. Trudgen 12029) replace: Baeckea sp. Mingenew (M.E.Trudgen 12029) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Moora (R. Bone 1993/1) replace: Baeckea sp. Moora (R.Bone 1993/1) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Morawa (M.A. Langley MAL4177) replace: Baeckea sp. Morawa (M.A.Langley MAL4177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mount Barloweerie (J.Z. Weber 5079) replace: Baeckea sp. Mount Barloweerie (J.Z.Weber 5079) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mt Glasse (P.G. Wilson 5717) replace: Baeckea sp. Mt Glasse (P.G.Wilson 5717) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Muntadgin (E.T. Bailey 231) replace: Baeckea sp. Muntadgin (E.T.Bailey 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Murchison River (M.E. Trudgen 12009) replace: Baeckea sp. Murchison River (M.E.Trudgen 12009) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nanga (A.S. George 11346) replace: Baeckea sp. Nanga (A.S.George 11346) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narembeen (G.J. Keighery & N. Gibson 3010) replace: Baeckea sp. Narembeen (G.J.Keighery & N.Gibson 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narrogin (R. Hnatiuk 780011) replace: Baeckea sp. Narrogin (R.Hnatiuk 780011) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nolba (M.E. Trudgen MET21632) replace: Baeckea sp. Nolba (M.E.Trudgen MET21632) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. North Ironcap (R.J. Cranfield 10580) replace: Baeckea sp. North Ironcap (R.J.Cranfield 10580) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Parker Range (M. Hislop & F. Hort MH 2968) replace: Baeckea sp. Parker Range (M.Hislop & F.Hort MH 2968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Paynes Find (S. Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Payne's Find (S.Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Payne's Find (S.Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Paynes Find (S. Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perenjori (J.W. Green 1516) replace: Baeckea sp. Perenjori (J.W.Green 1516) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perth Region (R.J. Cranfield 444) replace: Baeckea sp. Perth Region (R.J.Cranfield 444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Pigeon Rocks (D. Grace DJP 281) replace: Baeckea sp. Pigeon Rocks (D.Grace DJP 281) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A. Gardner s.n. 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A.Gardner s.n., 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sheoaks Rocks (M.E. Trudgen MET5452) replace: Baeckea sp. Sheoaks Rocks (M.E.Trudgen MET5452) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Stockton Road (M.E. Trudgen MET22077 & B. Rye) replace: Baeckea sp. Stockton Road (M.E.Trudgen MET22077 & B.Rye) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Tammin (R. Coveny 8319 & B. Habberley) replace: Baeckea sp. Tammin (R.Coveny 8319 & B.Habberley) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Three Springs (M.E. Trudgen 5368) replace: Baeckea sp. Three Springs (M.E.Trudgen 5368) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Walkaway (A.S. George 11249) replace: Baeckea sp. Walkaway (A.S.George 11249) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Western Australia (J. Drummond s.n.) replace: Baeckea sp. Western Australia (J.Drummond s.n.) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Whelarra (A.C. Burns 7) replace: Baeckea sp. Whelarra (A.C.Burns 7) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wialki (G.M. Storr s.n. 4/10/1958) replace: Baeckea sp. Wiakli (G.M.Storr s.n. 4/10/1958) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wubin (M.E. Trudgen 5404) replace: Baeckea sp. Wubin (M.E.Trudgen 5404) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yacke Yackine Dam (K.R. Newbey 9195) replace: Baeckea sp. Yacke Yackine Dam (K.R.Newbey 9195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Youndegin Hill (A.S. George 15772) replace: Baeckea sp. Youndegin Hill (A.S.George 15772) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yuna (M.E. Trudgen 2224) replace: Baeckea sp. Yuna (M.E.Trudgen 2224) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia dallanneyi subsp. dallanneyi var. dallanneyi replace: Banksia dallanneyi subsp. dallanneyi reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia dallanneyi subsp. dallanneyi var. mellicula replace: Banksia dallanneyi var. mellicula reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia nivea subsp. Morangup replace: Banksia nivea subsp. Morangup (M.Pieroni 9/42) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia sp. Boyup Brook (L.W. Sage LWS 2366) replace: Banksia sp. Boyup Brook (L.W.Sage LWS 2366) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea preissii subsp. laxa replace: Baumea preissii subsp. laxa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baumea preissii subsp. preissii replace: Baumea preissii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Baumea preissii subsp. preissii + replace: Baumea preissii + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Beaufortia sp. column (J.S. Beard 8119) replace: Beaufortia sp. Column (J.S.Beard 8119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. A Ravensthorpe (A.S. George 9474) replace: Beyeria sp. A Ravensthorpe (A.S.George 9474) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Bandalup Hill (G. Cockerton 7553) replace: Beyeria sp. Bandalup Hill (G.Cockerton 7553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Jackson Range (R. Cranfield & P. Spencer 7751) replace: Beyeria sp. Jackson Range (R.Cranfield & P.Spencer 7751) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Murchison (B. Jeanes s.n. 7/7/2005) replace: Beyeria sp. Murchison (B.Jeanes s.n. 7/7/2005) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Boronia crenulata subsp. crenulata var. angustifolia - replace: Boronia crenulata var. angustifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species +- find: Boronia crenulata 'Shark Bay' + replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: subspecies - find: Boronia crenulata subsp. Shark Bay replace: Boronia crenulata 'Shark Bay' reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Boronia crenulata subsp. crenulata var. angustifolia + replace: Boronia crenulata var. angustifolia + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: varietas - find: Boronia sp. Leeuwin (J. Scott 235) replace: Boronia sp. Leeuwin (J.Scott 235) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp. Location 4264 (R. Turner s.n.) replace: Boronia sp. Location 4264 (R.Turner s.n., 23 Sept. 1999) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borya sp. Wheatbelt (A.S. George 16470) replace: Borya sp. Wheatbelt (A.S.George 16470) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Bremer (K. Newbey 2980) replace: Bossiaea sp. Bremer (K.Newbey 2980) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Frankland (E.M. Sandiford EMS 896) replace: Bossiaea sp. Frankland (E.M.Sandiford EMS 896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Jackson Range (G. Cockerton & S. McNee LCS 13614) replace: Bossiaea sp. Jackson Range (G.Cockerton & S.McNee LCS 13614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Waroona (B.J. Keighery & N. Gibson 229) replace: Bossiaea sp. Waroona (B.J.Keighery & N.Gibson 229) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Goldfields (K.R. Newbey 6044) replace: Brunonia sp. Goldfields Goldfields (K.R. Newbey 6044) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Long hairs (D.E. Symon 2440) replace: Brunonia sp. Long Hairs (D.E.Symon 2440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunoniella acaulis var. acaulis replace: Brunoniella acaulis subsp. acaulis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caesia sp. Koolanooka Hills (R. Meissner & Y. Caruso 78) replace: Caesia sp. [Caesia sp. Koolanooka Hills (R. Meissner & Y. Caruso 78); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1139,230 +1149,230 @@ taxonomic_updates: - find: Caesia sp. Wongan (K.F. Kenneally 8820) replace: Caesia sp. Wongan (K.F.Kenneally 8820) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Muddarning Hill (S.D. Hopper 4013) replace: Caladenia sp. Muddarning Hill (S.D.Hopper 4013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Wyalkatchem (G.B. Brockman GBB 661) replace: Caladenia sp. Wyalkatchem (G.B.Brockman GBB 661) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xaestantha replace: Caladenia x aestantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcala replace: Caladenia x cala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcoactescens replace: Caladenia x coactescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xeludens replace: Caladenia x eludens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xenigma replace: Caladenia x enigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xericksoniae replace: Caladenia x ericksoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xerminea replace: Caladenia x erminea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexoleta replace: Caladenia x exoleta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexserta replace: Caladenia x exserta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xhypata replace: Caladenia x hypata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xidiastes replace: Caladenia x idiastes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xlavandulacea replace: Caladenia x lavandulacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xornata replace: Caladenia x ornata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xresupina replace: Caladenia x resupina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xspectabilis replace: Caladenia x spectabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xsuffusa replace: Caladenia x suffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtriangularis replace: Caladenia x triangularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtryphera replace: Caladenia x tryphera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Bungalbin (G.J. Keighery & N. Gibson 1656) replace: Calandrinia sp. Bungalbin (G.J.Keighery & N.Gibson 1656) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Coolcalalaya (G.J. Keighery & N. Gibson 698) replace: Calandrinia sp. Coolcalalaya (G.J.Keighery & N.Gibson 698) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick (G.J. Keighery 10905) replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Needilup (K.R. Newbey 4892) replace: Calandrinia sp. Needilup (K.R.Newbey 4892) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Ongerup (K.R. Newbey 11834) replace: Calandrinia sp. Ongerup (K.R.Newbey 11834) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Piawaning (A.C. Beauglehole 12257) replace: Calandrinia sp. Piawaning (A.C.Beauglehole 12257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. The Pink Hills (F. Obbens FO 19/06) replace: Calandrinia sp. The Pink Hills (F.Obbens FO 19/06) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calectasia grandiflora subsp. Wheatbelt + replace: Calectasia grandiflora (Wheatbelt variant) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Calectasia grandiflora subsp. grandiflora replace: Calectasia grandiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. southern replace: Calectasia grandiflora subsp. southern (H.Demarz 546) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies -- find: Calectasia grandiflora subsp. Wheatbelt - replace: Calectasia grandiflora (Wheatbelt variant) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: subspecies - find: Calectasia sp. Pinjar (C. Tauss 557) replace: Calectasia sp. Pinjar (C.Tauss 557) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistachys sp. south-coast variant (M. Carter 180) replace: Callistachys sp. south-coast variant (M.Carter 180) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Pilbara-Desert (M.E. Trudgen 11454) replace: Calocephalus sp. Pilbara-Desert (M.E.Trudgen 11454) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Wittenoom (A.S. George 1082) replace: Calocephalus sp. Wittenoom (A.S.George 1082) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Hopetoun (H. Taylor s.n.) replace: Calochilus sp. Hopetoun (H.Taylor s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. South-west swamps (B.G. Hammersley 1010) replace: Calochilus sp. South-west swamps (B.G.Hammersley 1010) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Wandoo Beard Orchid (D.M. Rose 344) replace: Calochilus sp. Wandoo Beard Orchid (D.M.Rose 344) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Mt Lindesay (B.G. Hammersley 439) replace: Calothamnus sp. Mt Lindesay (B.G.Hammersley 439) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Scott River (R.D. Royce 84) replace: Calothamnus sp. Scott River (R.D.Royce 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Whicher (B.J. Keighery & N. Gibson 230) replace: Calothamnus sp. Whicher (B.J.Keighery & N.Gibson 230) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. acutifolia replace: Calytrix acutifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. brevifolia replace: Calytrix acutifolia subsp. brevifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calytrix sp. Dragon Rocks (K. Kershaw & L. Kerrigan KK 2180) replace: Calytrix sp. Dragon Rocks (K.Kershaw & L.Kerrigan KK 2180) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Eneabba (B.J. Lepschi & T.R. Lally BJL3617) replace: Calytrix sp. Eneabba (B.J.Lepschi & T.R.Lally BJL3617) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Esperance (M.A. Burgman 4268A) replace: Calytrix sp. Esperance (M.A.Burgman 4268A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Jingaring (F. Obbens, R. Davis & L.W. Sage LWS1332) replace: Calytrix sp. Jingaring (F.Obbens, R.Davis & L.W.Sage LWS1332) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Scarp (H. Bowler 270) replace: Calytrix sp. Scarp (H.Bowler 270) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Tutunup (G.J. Keighery & N. Gibson 2953) replace: Calytrix sp. Tutunup (G.J.Keighery & N.Gibson 2953) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Wheatbelt (R. Davis 4544) replace: Calytrix sp. Wheatbelt (R.Davis 4544) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xgeneralis replace: Canna x generalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xorchiodes replace: Canna x orchiodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine sp. Jandakot (P. Luff s.n. 4/7/1969) replace: Cardamine sp. Jandakot (P.Luff s.n. 4/7/1969) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpobrotus sp. Thevenard Island (M. White 050) replace: Carpobrotus sp. Thevenard Island (M.White 050) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. A Kimberley Flora (S.J. Forbes 2163) replace: Cartonema sp. A Kimberley Flora (S.J.Forbes 2163) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. B Kimberley Flora (D.J. Edinger 336) replace: Cartonema sp. B Kimberley Flora (D.J.Edinger 336) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caulerpa scalpelliformis replace: Caulerpa sp. [Caulerpa scalpelliformis; WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -1371,34 +1381,34 @@ taxonomic_updates: - find: Caustis sp. Boyanup (G.S. McCutcheon 1706) replace: Caustis sp. Boyanup (G.S.McCutcheon 1706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium drummondii subsp. drummondii replace: Chamelaucium drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium forrestii subsp. forrestii replace: Chamelaucium forrestii MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. pauciflorum replace: Chamelaucium pauciflorum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. thryptomenioides replace: Chamelaucium pauciflorum subsp. thryptomenoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chamelaucium sp. Yalgoo (Y. Chadwick 1816) replace: Chamelaucium sp. Yalgoo (Y.Chadwick 1816) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon sp. Zuytdorp (G.J. Keighery & N. Gibson 906) replace: Chrysopogon sp. Zuytdorp (G.J.Keighery & N.Gibson 906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codium duthieae replace: Codium sp. [Codium duthieae; WAH_2022_2] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1407,402 +1417,402 @@ taxonomic_updates: - find: Comesperma sp. A Kimberley Flora (K.F. Kenneally 9242) replace: Comesperma sp. A Kimberley Flora (K.F.Kenneally 9242) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia adenothalia replace: Commersonia adenothalia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia bivillosa replace: Commersonia bivillosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Bindoon (C. Wilkins & F. & J. Hort CW 2155) replace: Commersonia sp. Bindoon (C.Wilkins & F. & J.Hort CW 2155) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Mt Groper (R. Cranfield & D. Kabay 9157) replace: Commersonia sp. Mount Groper (R.Cranfield & D.Kabay 9157) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis candicans var. xleptophylla replace: Conostylis candicans var. x leptophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Conostylis seorsiflora subsp. Nyabing replace: Conostylis seorsiflora subsp. Nyabing (A.Coates s.n. 2/10/1998) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corchorus sp. Fitzroy Crossing (A.J. Ewart s.n. PERTH 01526790) replace: Corchorus sp. Fitzroy Crossing (A.J.Ewart s.n. PERTH 01526790) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Hamersley Range (S. van Leeuwen 3586) replace: Corchorus sp. Hamersley Range (S.van Leeuwen 3586) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Yarrie (J. Bull & D. Roberts CAL 01.05) - replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) + replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia candida subsp. xlautifolia replace: Corymbia candida subsp. x lautifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia xopacula replace: Corymbia x opacula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia xpedimontana replace: Corymbia x pedimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia arenicola replace: Craspedia arenicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia argillicola replace: Craspedia argillicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria sp. Chichester Tablelands (A.A. Mitchell PRP226) replace: Crotalaria sp. Chichester Tablelands (A.A.Mitchell PRP226) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria spectabilis subsp. spectabilis replace: Crotalaria spectabilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis sp. Bunbury (G. Brayshaw s.n. 26/2/91) replace: Cucumis sp. Bunbury (G.Brayshaw s.n. 26/2/91) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Dowak (J.M. Fox 86/271) replace: Cyathostemon sp. Dowak (J.M.Fox 86/271) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Lake King (M.E. & M.E. Trudgen 1462) replace: Cyathostemon sp. Lake King (M.E. & M.E.Trudgen 1462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Salmon Gums (B. Archer 769) replace: Cyathostemon sp. Salmon Gums (B.Archer 769) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum sp. Hamersley (M. Trudgen 2302) replace: Cynanchum sp. Hamersley (M.Trudgen 2302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Dampiera angulata subsp. angulata - replace: Dampiera angulata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera angulata subsp. Peak Charles replace: Dampiera angulata subsp. Peak Charles (K.R.Newbey 5402) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Dampiera angulata subsp. angulata + replace: Dampiera angulata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Dampiera diversifolia de replace: Dampiera diversifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera eriocephala de replace: Dampiera eriocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de replace: Dampiera haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de subsp. haematotricha replace: Dampiera haematotricha subsp. haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera lindleyi de replace: Dampiera lindleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Central Wheatbelt (L.W. Sage, F. Hort, C.A. Hollister LWS 2321) replace: Dampiera sp. Central Wheatbelt (L.W.Sage, F.Hort, C.A.Hollister LWS2321) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Jurien (G. Lullfitz s.n. 10/7/1986) replace: Dampiera sp. Jurien (G.Lullfitz s.n. 10/7/1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Wongan Hills (R.D. Royce 6637) replace: Dampiera sp. Wongan Hills (R.D.Royce 6637) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera trigona de replace: Dampiera trigona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Carnamah (J. Coleby-Williams 148) replace: Darwinia sp. Carnamah (J.Coleby-Williams 148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Chiddarcooping (S.D. Hopper 6944) replace: Darwinia sp. Chiddarcooping (S.D.Hopper 6944) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Dryandra (G.J. Keighery 9295) replace: Darwinia sp. Dryandra (G.J.Keighery 9295) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Gibson (R.D. Royce 3569) replace: Darwinia sp. Gibson (R.D.Royce 3569) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Morawa (C.A. Gardner 2662) replace: Darwinia sp. Morawa (C.A.Gardner 2662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Baring (K.R. Newbey 9775) replace: Darwinia sp. Mt Baring (K.R.Newbey 9775) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Burdett (N.G. Marchant 80/42) replace: Darwinia sp. Mt Burdett (N.G.Marchant 80/42) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ney (M.A. Burgman & S. McNee 1274) replace: Darwinia sp. Mt Ney (M.A.Burgman & S.McNee 1274) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ragged (S. Barrett 663) replace: Darwinia sp. Mt Ragged (S.Barrett 663) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Success (G.J. Keighery 2299) replace: Darwinia sp. Mt Success (G.J.Keighery 2299) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Peak Charles (A.S. George 10627) replace: Darwinia sp. Peak Charles (A.S.George 10627) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Ravensthorpe (G.J. Keighery 8030) replace: Darwinia sp. Ravensthorpe (G.J.Keighery 8030) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Stirling Range (G.J. Keighery 5732) replace: Darwinia sp. (Stirling Range) G.J.Keighery 5732 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Thumb Peak (K.R. Newbey 4847) replace: Darwinia sp. Thumb Peak (K.R.Newbey 4847) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Westdale (F. Hort 864) replace: Darwinia sp. Westdale (F.Hort 864) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson (G.J. Keighery 12717) replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Wyalgima Hill (L.W. Sage, J.P. Pigott & E.B. Pigott LWS1549) replace: Darwinia sp. Wyalgima Hill (L.W.Sage, J.P.Pigott & E.B.Pigott LWS1549) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia thymoides subsp. bella replace: Darwinia thymoides subsp. bella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Darwinia thymoides subsp. thymoides replace: Darwinia thymoides var. thymoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. A Kimberley Flora (K.F. Kenneally 8686) replace: Dicarpidium sp. A Kimberley Flora (K.F.Kenneally 8686) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. B Kimberley Flora (G.J. Keighery 10138) replace: Dicarpidium sp. B Kimberley Flora (G.J.Keighery 10138) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Mt Leake (T. Willing 469) replace: Dicarpidium sp. Mt Leake (T.Willing 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Cue (A.A. Mitchell 764) replace: Dicrastylis sp. Cue (A.A.Mitchell 764) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Denham (M. Lewis 42/92) replace: Dicrastylis sp. Denham (M.Lewis 42/92) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Peron Peninsula (M.E. Trudgen 7373) replace: Dicrastylis sp. Peron Peninsula (M.E.Trudgen 7373) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria sp. Carson River (A.A. Mitchell 4387) replace: Digitaria sp. Carson River (A.A.Mitchell 4387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Capel (P.A. Jurjevich 1771) replace: Dillwynia sp. Capel (P.A.Jurjevich 1771) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coolgardie (V.E. Sands 637.3.1) replace: Dillwynia sp. Coolgardie (V.E.Sands 637.3.1) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coujinup Hill (M.A. Burgman 1560) replace: Dillwynia sp. Coujinup Hill (M.A.Burgman 1560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Northern Sandplains (M. Hislop 3278) replace: Dillwynia sp. Northern Sandplains (M.Hislop 3278) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Arrowsmith (K.W. Dixon 924) replace: Diuris sp. Arrowsmith (K.W.Dixon 924) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Eneabba (A.H. Burbidge 3941) replace: Diuris sp. Eneabba (A.H.Burbidge 3941) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xbadgerupii replace: Drosera x badgerupii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xsidjamesii replace: Drosera x sidjamesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita sp. Trayning (A.M. George 97) replace: Drummondita sp. Trayning (A.M.George 97) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinochloa crusgalli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecklonia radiata replace: Ecklonia radiata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. A Kimberley Flora (W.V. Fitzgerald 1038) replace: Eleocharis sp. A Kimberley Flora (W.V.Fitzgerald 1038) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. B Kimberley Flora (K.F. Kenneally 8727) replace: Eleocharis sp. B Kimberley Flora (K.F.Kenneally 8272) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elythranthera xintermedia replace: Elythranthera x intermedia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enekbatus roseus replace: Enekbatus roseus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. Mt Robinson (S. van Leeuwen 4109) replace: Eragrostis sp. Mt Robinson (S.van Leeuwen 4109) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea violacea subsp. Dobaderry Swamp replace: Eremaea violacea subsp. Dobaderry Swamp (M.E.Trudgen 3909) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea violacea var. violacea replace: Eremaea violacea subsp. violacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea xcodonocarpa replace: Eremaea x codonocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea xphoenicea replace: Eremaea x phoenicea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Eremophila sp. long pedicels (G. Cockerton 1975) - replace: Eremophila sp. long pedicels (G.Cockerton 1975) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Jackson (G.J. Keighery 4372) replace: Eremophila sp. Mt Jackson (G.J.Keighery 4372) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremophila sp. long pedicels (G. Cockerton 1975) + replace: Eremophila sp. long pedicels (G.Cockerton 1975) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Eriachne armitii replace: Eriachne armittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. C Kimberley Flora (G.J. Keighery 4610) replace: Eriocaulon sp. C Kimberley Flora (G.J.Keighery 4610) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. E Kimberley Flora (A.S. George 12635) replace: Eriocaulon sp. E Kimberley Flora (A.S.George 12635) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. G Kimberley Flora (K.F. Kenneally 11374E) replace: Eriocaulon sp. G Kimberley Flora (K.F.Kenneally 11374E) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium ferox replace: Eryngium ferox MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. minus replace: Eryngium pinnatifidum subsp. minus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium pinnatifidum subsp. pinnatifidum replace: Eryngium pinnatifidum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. umbraphilum replace: Eryngium pinnatifidum subsp. umbraphilum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium sp. Lake Muir (E. Wittwer 2293) replace: Eryngium sp. Lake Muir (E.Wittwer 2293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina xsykesii replace: Erythrina x sykesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus aspersa x Eucalyptus falcata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus x [Eucalyptus aspersa x falcata; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1812,27 +1822,27 @@ taxonomic_updates: replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus buprestium x Eucalyptus erectifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x ligulata replace: Eucalyptus buprestium x Eucalyptus ligulata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus buprestium x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus x [Eucalyptus buprestium x erectifolia; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1846,7 +1856,7 @@ taxonomic_updates: - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus x [Eucalyptus buprestium x staeri; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1856,26 +1866,26 @@ taxonomic_updates: replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus falcata subsp. falcata replace: Eucalyptus falcata var. falcata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus loxophleba x Eucalyptus wandoo reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus x [Eucalyptus loxophleba x wandoo; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1885,7 +1895,7 @@ taxonomic_updates: replace: Eucalyptus macrocarpa x Eucalyptus pyriformis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus macrocarpa x pyriformis replace: Eucalyptus x [Eucalyptus macrocarpa x pyriformis; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1895,12 +1905,12 @@ taxonomic_updates: replace: Eucalyptus marginata x Eucalyptus megacarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x pachyloma replace: Eucalyptus marginata x Eucalyptus pachyloma reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x megacarpa replace: Eucalyptus x [Eucalyptus marginata x megacarpa; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1915,12 +1925,12 @@ taxonomic_updates: replace: Eucalyptus oldfieldii subsp. Millar Range (M.French 303) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus preissiana x staeri replace: Eucalyptus preissiana x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus preissiana x staeri replace: Eucalyptus x [Eucalyptus preissiana x staeri; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -1929,61 +1939,61 @@ taxonomic_updates: - find: Eucalyptus rhodantha var. xpetiolaris replace: Eucalyptus rhodantha var. x petiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sargentii subsp. onesia replace: Eucalyptus sargentii subsp. onesis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sp. Esperance (M.E. French 1579) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Eyre (K. Hill & L.A.S. Johnson KH 2170) replace: Eucalyptus sp. Eyre (K.Hill & L.A.S. Johnson KH 2170) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. F Kimberley Flora replace: Eucalyptus sp. F reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fitzgerald River (M.I.H. Brooker 10923) replace: Eucalyptus sp. Fitzgerald River (M.I.H.Brooker 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range (D. Nicolle 2157) replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. H Kimberley Flora (S.J. Forbes 2560) replace: Eucalyptus sp. H Kimberley Flora (S.G.Forbes 2560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Lake Johnston (D. Nicolle & M. French DN 3663) replace: Eucalyptus sp. Lake Johnston (D.Nicolle & M.French DN 3663) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Marvel Loch (D. Nicolle & M. French DN 4794) replace: Eucalyptus sp. Marvel Loch (D.Nicolle & M.French DN 4794) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Ravensthorpe (A.S. George 616) Southern Red Mallee replace: Eucalyptus sp. Ravensthorpe (A.S.George 616) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Truslove (M.I.H. Brooker 7499) replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L. Johnson 9127 & B. Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus trichopoda replace: Eucalyptus sp. [Eucalyptus trichopoda] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1993,362 +2003,362 @@ taxonomic_updates: replace: Eucalyptus vegrandis subsp. Fine leaf (P.J.White 452) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus xbalanites replace: Eucalyptus x balanites reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbennettiae replace: Eucalyptus x bennettiae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbrachyphylla replace: Eucalyptus x brachyphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xcarnabyi replace: Eucalyptus x carnabyi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xchrysantha replace: Eucalyptus x chrysantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerectifolia replace: Eucalyptus erectifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerythrandra replace: Eucalyptus x erythrandra reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ximpensa replace: Eucalyptus x impensa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xkalganensis replace: Eucalyptus x kalganensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xlateritica replace: Eucalyptus x lateritica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmissilis replace: Eucalyptus x missilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmundijongensis replace: Eucalyptus x mundijongensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xphylacis replace: Eucalyptus x phylacis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xstoataptera replace: Eucalyptus x stoataptera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xtetragona replace: Eucalyptus x tetragona reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii subsp. drummondii replace: Euphorbia drummondii var. drummondii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euphorbia sp. B Kimberley Flora (B.J. Carter 629) replace: Euphorbia sp. B Kimberley Flora (B.J.Carter 629) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. epacridoides replace: Eutaxia epacridoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. sparsifolia replace: Eutaxia epacridoides subsp. sparsifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. hirsuta replace: Eutaxia neurocalyx subsp. hirsuta MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. leptophylla replace: Eutaxia neurocalyx subsp. leptophylla MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. major replace: Eutaxia neurocalyx subsp. major MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia sp. Jasper Hill (R.J. Cranfield 8607) replace: Eutaxia sp. Jasper Hill (R.J.Cranfield 8607) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia sp. North Ironcap (P. Armstrong PA 06/898) replace: Eutaxia sp. North Ironcap (P.Armstrong et al. 06/898) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Festulolium loliaceum replace: Festulolium loliaceum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. A Kimberley Flora (A.S. George 13584) replace: Fimbristylis sp. A Kimberley Flora (A.S.George 13584) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. B Kimberley Flora (K.A. Menkhorst 767) replace: Fimbristylis sp. B Kimberley Flora (K.A.Menkhorst 767) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. C Kimberley Flora (T.G. Hartley 14511) replace: Fimbristylis sp. C Kimberley Flora (T.G.Hartley 14511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. D Kimberley Flora (A.C. Beauglehole 52448) replace: Fimbristylis sp. D Kimberley Flora (A.C.Beauglehole 52448) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. E Kimberley Flora (C.R. Dunlop 5403) replace: Fimbristylis sp. E Kimberley Flora (C.R.Dunlop 5403) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. F Kimberley Flora (A.S. George 13789) replace: Fimbristylis sp. F Kimberley Flora (A.S.George 13789) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. G Kimberley Flora (A.C. Beauglehole 51810) replace: Fimbristylis sp. G Kimberley Flora (A.C.Beauglehole 51810) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. I Kimberley Flora (R.J. Hnatiuk 112) replace: Fimbristylis sp. I Kimberley Flora (R.J.Hnatiuk 112) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. K Kimberley Flora (E. Langfield 40) replace: Fimbristylis sp. K Kimberley Flora (E.Langfield 40) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. L Kimberley Flora (K.F. Kenneally 11167) replace: Fimbristylis sp. L Kimberley Flora (K.F.Kenneally 11167) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Shay Gap (K.R. Newbey 10293) replace: Fimbristylis sp. Shay Gap (K.R.Newby 10293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Gahnia sp. dull bases (K.R. Newbey 5111) - replace: Gahnia sp. dull bases (K.R.Newbey 5111) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. Headland (G.J. Keighery 8501) replace: Gahnia sp. Headland (G.J.Keighery 8501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. L (K.R. Newbey 7888) replace: Gahnia sp. L (K.R.Newbey 7888) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gahnia sp. dull bases (K.R. Newbey 5111) + replace: Gahnia sp. dull bases (K.R.Newbey 5111) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Gastrolobium asperum replace: Gastrolobium asperum MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Gastrolobium sp. crenulatum capitate (E. & S. Pignatti 1588) - replace: Gastrolobium crenulatum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. East Peak (E.D. Middleton EDM 43) replace: Gastrolobium sp. East Peak (E.D.Middleton EDM 43) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Harvey (G.J. Keighery 16821) replace: Gastrolobium sp. Harvey (G.J.Keighery 16821) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Prostrate Boddington (M. Hislop 2130) replace: Gastrolobium sp. Prostrate Boddington (M.Hislop 2130) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gastrolobium sp. crenulatum capitate (E. & S. Pignatti 1588) + replace: Gastrolobium crenulatum + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Gastrolobium wonganense replace: Gastrolobium wonganensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A. Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A.Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Marchagee (A. Crawford ADC 1353) replace: Geleznowia sp. Marchagee (A.Crawford ADC 1353) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia verrucosa subsp. Kalbarri replace: Geleznowia verrucosa subsp. Kalbarri (L.M.Broadhurst 123) L.M.Broadh. reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Geleznowia verrucosa subsp. verrucosa replace: Geleznowia verrucosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Hamersley Range hilltops (S. van Leeuwen 4345) replace: Genus sp. Hamersley Range hilltops (S.van Leeuwen 4345) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Nillup (R.D. Royce 98) replace: Genus sp. Nillup (R.D.Royce 98) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonota replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine lactovirens replace: Glycine lactivirens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Billabong (B. Nordenstam & A. Anderberg 203) replace: Gnephosis sp. Billabong (B.Nordenstam & A.Anderberg 203) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Norseman (K.R. Newbey 8096) replace: Gnephosis sp. Norseman (K.R.Newbey 8096) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Pt Quobba (P.G. Wilson 12622) replace: Gnephosis sp. Pt Quobba (P.G.Wilson 12622) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Stirling Range (C.F. Wilkins et al. CW 2513) replace: Gompholobium sp. Stirling Range (C.F.Wilkins et al. CW 2513) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Belele (D.W. Goodall 3215) replace: Gomphrena sp. Belele (D.W.Goodall 3215) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Maret Islands (A.A. Mitchell 5414) replace: Gomphrena sp. Maret Islands (A.A.Mitchell 5414) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Gonocarpus benthamii subsp. benthamii - replace: Gonocarpus benthamii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus benthamii subsp. Stirling replace: Gonocarpus benthamii subsp. Stirling (C.J.Robinson 1080) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Gonocarpus benthamii subsp. benthamii + replace: Gonocarpus benthamii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Goodenia affinis de replace: Goodenia affinis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pinifolia de replace: Goodenia pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pulchella subsp. Coastal Plain A replace: Goodenia pulchella subsp. Coastal Plain A (M.Hislop 634) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Coastal Plain B replace: Goodenia pulchella subsp. Coastal Plain B (L.W.Sage 2336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Dragon Rocks replace: Goodenia pulchella subsp. Dragon Rocks (A.M.Coates 3374) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Mt Barker replace: Goodenia pulchella subsp. Mt Barker (K.F.Kenneally 1166) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Wheatbelt replace: Goodenia pulchella subsp. Wheatbelt (L.W.Sage & F.Hort 795) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia sp. Bachsten Creek (M.D. Barrett 685) replace: Goodenia sp. Bachsten Creek (M.D.Barrett 685) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Beyondie (L.W. Sage & S. van Leeuwen LWS 2518) replace: Goodenia sp. Beyondie (L.W.Sage & S.J.van Leeuwen LWS 2518) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Carnarvon Range (D.J. Edinger Nats 30) replace: Goodenia sp. Carnarvon Range (D.J.Edinger Nats 30) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Dampier Peninsula (B.J. Carter 675) replace: Goodenia sp. Dampier Peninsula (B.J.Carter 675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. East Pilbara (A.A. Mitchell PRP 727) O'Meara's Goodenia replace: Goodenia sp. East Pilbara (A.R.Mitchell PRP 727) WA Herbarium reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Little Sandy Desert (A.S. Mitchell 989) replace: Goodenia sp. Little Sandy Desert (A.S.Mitchell 989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mount Bomford (M.D. Barrett 423) replace: Goodenia sp. Mount Bomford (M.D.Barrett 423) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mt Elvire (D.J. Edinger 1857) replace: Goodenia sp. Mt Elvire (D.J.Edinger 1857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. South Coast (A.R. Annels ARA 1846) replace: Goodenia sp. South Coast (A.R.Annels 1846) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Stirling Range (R. Cranfield & D. Kabay 9148) replace: Goodenia sp. Stirling Range (R.Cranfield & D.Kabay 9148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia xanthotricha de replace: Goodenia xanthotricha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grammosolen sp. Mt Ridley (W.R. Archer 1210911) replace: Grammosolen sp. Mt Ridley (W.R.Archer 1210911) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea brachystylis subsp. Busselton replace: Grevillea brachystylis subsp. Busselton (G.J.Keighery s.n. 28/8/1985) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Gunapin (F. Hort 308) replace: Grevillea sp. Gunapin (F.Hort 308) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Harrismith (G.J. Keighery & N. Gibson 7094) replace: Grevillea sp. [Grevillea sp. Harrismith (G.J. Keighery & N. Gibson 7094); WAH_2022_2] @@ -2358,7 +2368,7 @@ taxonomic_updates: - find: Grevillea sp. Stirling Range (D.J. McGillivray 3488 & A.S. George) replace: Grevillea sp. Stirling Range (D.J.McGillivray 3488 & A.S.George) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Trayning (W. Johnston WJ 071) replace: Grevillea sp. [Grevillea sp. Trayning (W. Johnston WJ 071); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -2367,568 +2377,568 @@ taxonomic_updates: - find: Grevillea sp. Victoria Desert (R. Davis et al. RD 11611) replace: Grevillea sp. Victoria Desert (R.Davis et al. RD 11611) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Yerilgee Hills (T. Laslett TL 025) replace: Grevillea sp. Yerilgee Hills (T.Laslett TL 025) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea squiresae replace: Grevillea squiresiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea synapheae subsp. A Flora of Australia replace: Grevillea synapheae subsp. A Flora of Australia (S.D.Hopper 6333) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea uncinulata subsp. Coomallo replace: Grevillea uncinulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gunniopsis sp. Nuytsland (G.J. Keighery & J.J. Alford 522) replace: Gunniopsis sp. Nuytsland (G.J.Keighery & J.J.Alford 522) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon sp. Whoogarup Range (A.S. George 1910) replace: Gyrostemon sp. Whoogarup Range (A.S.George 1910) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum sp. A Kimberley Flora (K.F. Kenneally 8639) replace: Haemodorum sp. A Kimberley Flora (K.F.Kenneally 8639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea sp. Great Victoria Desert (L. Cockram LAC 139) - replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) + replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (B. Keighery 2599) replace: Hakea sp. Walyunga (B.Keighery 2599) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (L. Penn s.n.) replace: Hakea sp. Walyunga (L.Penn s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Yalgorup (B.J. Keighery & N. Gibson 897) replace: Hakea sp. Yalgorup (B.J.Keighery & N.Gibson 897) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea var. Allambi Stn replace: Halgania cyanea var. Allambi Stn (B.W.Strong 676) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania cyanea var. Charleville replace: Halgania cyanea var. (Charleville R.W.Purdie+ 111) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas -- find: Halgania gustafsenii var. gustafsenii - replace: Halgania gustafsenii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Halgania gustafsenii var. Mid West replace: Halgania gustafsenii var. Mid West (G.Perry 370) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Halgania gustafsenii var. gustafsenii + replace: Halgania gustafsenii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Halgania solanacea var. Mt Doreen replace: Halgania solanacea var. Mt Doreen (G.M.Chippendale 4206) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania solanacea var. solanacea replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. A Kimberley Flora (H.A. Johnson 5123) replace: Halgania sp. A Kimberley Flora (H.A.Johnson 5123) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Peak Eleanora (M.A. Burgman 3547 B) replace: Halgania sp. Peak Eleanora (M.A.Burgman 3547 B) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Wongan Hills (K.F. Kenneally 2393) replace: Halgania sp. Wongan Hills (K.F.Kenneally 2393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. Lake Grace replace: Halosarcia halocnemoides subsp. Lake Grace ( N.Casson G231.10) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia sp. Lake Moore (M.N. Lyons 2603) replace: Halosarcia sp. Lake Moore (M.N.Lyons 2603) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa sp. Eremaean (A.S. George 3894) replace: Harmsiodoxa sp. Eremaean (A.S.George 3894) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Bachsten Creek (R.L. Barrett & M.D. Barrett RLB 3808) replace: Helicteres sp. Bachsten Creek (R.L.Barrett & M.D.Barrett RLB 3808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Carson River (I. Cowie & Wendell IC 4232) replace: Helicteres sp. Carson River (I.Cowie & Wendell IC 4232) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Manning Peak (K.F. Kenneally 10266 & B.P.M. Hyland) replace: Helicteres sp. Manning Peak (K.F.Kenneally 10266 & B.P.M.Hyland) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mertens Falls (K.F. Kenneally 7887) replace: Helicteres sp. Mertens Falls (K.F.Kenneally 7887) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mt Shadforth (I.R. Telford 11609) replace: Helicteres sp. Mt Shadforth (I.R.Telford 11609) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra glabra subsp. glabra replace: Hemiandra glabra reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Arrino (J.J. Alford 1175) replace: Hemigenia sp. Arrino (J.J.Alford 1175) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Cue (K.F. Kenneally 47A) replace: Hemigenia sp. Cue (K.F.Kenneally 47A) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Dalwallinu (W.E. Blackall 2870) replace: Hemigenia sp. Dalwallinu (W.E.Blackall 2870) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Edah (J.W. Green 1601) replace: Hemigenia sp. Edah (J. W.Green 1601) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Gibson (R. Coveny 7893 & B.R. Maslin) replace: Hemigenia sp. Gibson (R.Coveny 7893 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Glenburgh (R.J. Cranfield 9725) replace: Hemigenia sp. Glenburgh (R.J.Cranfield 9725) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Jibberding (J. D'Alonzo 418) replace: Hemigenia sp. Jibberding (J.D'Alonzo 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Hemigenia sp. major (C.A. Gardner 2677) - replace: Hemigenia sp. major (C.A.Gardner 2677) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Merredin (M. Koch 2959) replace: Hemigenia sp. Merredin (M.Koch 2959) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Newdegate (E. Bishop 75) replace: Hemigenia sp. Newdegate (E.Bishop 75) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Paynes Find (A.C. Beauglehole 49138) replace: Hemigenia sp. Paynes Find (A.C.Beauglehole 49138) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Pindar (H. Demarz 7428) replace: Hemigenia sp. Pindar (H.Demarz 7428) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Tallering (H. Pringle 3323) replace: Hemigenia sp. Tallering (H.Pringle 3323) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Wilroy (B.J. Conn 2150) replace: Hemigenia sp. Wilroy (B.J.Conn 2150) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yalgoo (A.M. Ashby 2624) replace: Hemigenia sp. Yalgoo (A.M.Ashby 2624) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yuna (A.C. Burns 95) replace: Hemigenia sp. Yuna (A.C.Burns 95) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hemigenia sp. major (C.A. Gardner 2677) + replace: Hemigenia sp. major (C.A.Gardner 2677) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Hibbertia sp. A Kimberley Flora (T.E.H. Aplin et al. 898) replace: Hibbertia sp. A Kimberley Flora (T.E.H.Aplin et al. 898) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Kojonup (C.M. Lewis 288) replace: Hibbertia sp. Kojonup (C.M.Lewis 288) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Tathra (M.A. Langley & J.M. Harvey 1873) replace: Hibbertia sp. Tathra (M.A.Langley & J.M.Harvey 1873) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. A Kimberley Flora (E.A. Chesterfield 310) replace: Hibiscus sp. A Kimberley Flora (E.A.Chestfield 310) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. B Kimberley Flora (P.G. Wilson 11143) replace: Hibiscus sp. B Kimberley Flora (P.G.Wilson 11143) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Canga (P.J.H. Hurter & J. Naaykens 11013) replace: Hibiscus sp. Canga (P.J.H.Hurter & J.Naaykens 11013) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Brockman (E. Thoma ET 1354) replace: Hibiscus sp. Mt Brockman (E.Thoma ET 1354) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Robinson (G. Byrne 3537) replace: Hibiscus sp. Mt Robinson (G.Byrne 3537) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Theda (M.D. Barrett & R.L. Barrett MDB 2144) replace: Hibiscus sp. Theda (M.D.Barrett & R.L.Barrett MDB 2144) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Wonganoo Station (K. Boladeras 125) replace: Hibiscus sp. Wonganoo Station (K.Boladeras 125) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus floribundus subsp. Hill River replace: Hybanthus floribundus subsp. Hill River (E.M.Bennett 2252) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hydatella sp. Austin Bay (N. Gibson & M. Lyons 2387) replace: Hydatella sp. Austin Bay (N.Gibson & M.Lyons 2387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coorowensis replace: Hydrocotyle coorowensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coraginaensis replace: Hydrocotyle coraginaensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle crassipes replace: Hydrocotyle crassipes MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle decipiens replace: Hydrocotyle decipiens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle hexaptera replace: Hydrocotyle hexaptera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Truslove (M.A. Burgman 4419) replace: Hydrocotyle sp. Truslove (M.A.Burgman 4419) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Warriedar (P.G. Wilson 12267) replace: Hydrocotyle sp. Warriedar (P.G.Wilson 12267) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle vigintimilia replace: Hydrocotyle vigintimilia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20/896 CAS) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20896) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cataby (G.J. Keighery 5151) replace: Hypocalymma sp. Cataby (G.J.Keighery 5151) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis sp. Prince Regent River (M.D. Barrett 924 B) replace: Hypoxis sp. Prince Regent River (M.D.Barrett 924 B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera gilesii subsp. gilesii replace: Indigofera sp. Gilesii (M.E.Trudgen 15869) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera mackinlayi replace: Indigofera mckinlayi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. A Kimberley Flora (G.J. Keighery & N. Gibson 70) replace: Indigofera sp. A Kimberley Flora (G.J.Keighery & N.Gibson 70) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Bungaroo Creek (S. van Leeuwen 4301) replace: Indigofera sp. Bungaroo Creek (S.van Leeuwen 4301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Mackinlayi (A.A. Mitchell 7086) replace: Indigofera sp. Mackinlayi (A.A.Mitchell 7086) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Warburton (A.A. Munir 5209) replace: Indigofera sp. Warburton (A.A.Munir 5209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. A Kimberley Flora (L.J. Penn 84) replace: Ipomoea sp. A Kimberley Flora (L.J.Pen 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. Kalumburu (A.A. Mitchell 3869B) replace: Ipomoea sp. Kalumburu (A.A.Mitchell 3869B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Canning Reservoir (M.D. Tindale 121 & B.R. Maslin) replace: Isopogon sp. Canning Reservoir (M.D.Tindale 121 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Darling Range (F. Hort 1662) replace: Isopogon sp. Darling Range (F.Hort 1662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Ravensthorpe (D.B. Foreman 1207) replace: Isopogon sp. Ravensthorpe (D.B.Foreman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Watheroo (D. Foreman 477) replace: Isopogon sp. Watheroo (D.Foreman 477) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. cristata replace: Isotoma hypocrateriformis var. cristata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotoma hypocrateriformis var. hypocrateriformis replace: Isotoma hypocrateriformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. trichogramma replace: Isotoma hypocrateriformis var. trichogamma MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotropis sp. Arid zone (G. Byrne 2775) replace: Isotropis iophyta reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Shark Bay (M.E. Trudgen 7170) replace: Isotropis sp. Shark Bay (M.E.Trudgen 7170) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Yalgoo (S. Patrick 2375) replace: Isotropis petrensis reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum sp. Exmouth (G. Marsh 77) replace: Jasminum sp. Exmouth (G.Marsh 77) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Marandoo (M.E. Trudgen 1554) replace: Josephinia sp. Marandoo (M.E.Trudgen 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Mt Edgar Station (N.T. Burbidge 1194) replace: Josephinia sp. Mt Edgar Station (N.T.Burbidge 1194) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia sp. South coast (T.R. Lally 1576 & I.P. Lally) replace: Kennedia sp. south coast (T.R.Lally 1576 & I.P.Lally) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia adenogyna replace: Keraudrenia adenogyna MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. cacaobrunnea ms replace: Keraudrenia cacaobrunnea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. undulata replace: Keraudrenia cacaobrunnea subsp. undulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia saxatilis replace: Keraudrenia saxatilis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia velutina subsp. elliptica replace: Keraudrenia velutina subsp. elliptica MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia velutina subsp. velutina replace: Keraudrenia velutina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lambertia orbifolia subsp. Scott River Plains replace: Lambertia orbifolia subsp. Scott River Plains (L.W.Sage 684) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lasiopetalum cordifolium subsp. cordifolium replace: Lasiopetalum cordifolium reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum leucogriseum replace: Lasiopetalum leucogriseum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum molle subsp. molle replace: Lasiopetalum molle reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum oldfieldii subsp. oldfieldii replace: Lasiopetalum oldfieldii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A. Griffin 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E. Ried 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E.Reid 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Denmark (B.G. Hammersley 2012) replace: Lasiopetalum sp. Denmark (B.G.Hammersley 2012) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Desmond (N. McQuoid 653) replace: Lasiopetalum sp. Desmond (N.McQuoid 653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Hill River (T.N. Stoate 5) replace: Lasiopetalum sp. Hill River (T.N.Stoate 5) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Kukerin (C.A. Gardner 13646) replace: Lasiopetalum sp. Kukerin (C.A.Gardner 13646) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Caroline (S.D. Hopper SDH 6381) replace: Lasiopetalum sp. Mount Caroline (S.D.Hopper SDH 6381) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Lesueur (E.A. Griffin 1997) replace: Lasiopetalum sp. Mount Lesueur (E.A.Griffin 1997) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mt Ragged (T.E.H. Aplin 4349) replace: Lasiopetalum sp. Mt Ragged (T.E.H.Aplin 4349) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Northam (F. Hort 1196) replace: Lasiopetalum sp. Northam (F.Hort 1196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Toodyay (F. Hort 2689) replace: Lasiopetalum sp. Toodyay (F.Hort 2689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K. Shepherd & C. Wilkins KS 220) replace: Lasiopetalum erectifolium reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Weam Reserve (M. Hislop 2755) replace: Lasiopetalum sp. Weam Reserve (M.Hislop 2755) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea pinnacula replace: Latrobea pinnaculum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea sp. South Coast (A.M. Ashby 1949) replace: Latrobea sp. South Coast (A.M.Ashby 1949) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencia sp. Anna Plains (N.T. Burbidge 1433) replace: Lawrencia sp. Anna Plains (N.T.Burbidge 1433) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia formosa subsp. Wheatbelt replace: Lechenaultia formosa subsp. 'Wheatbelt' (R.J.Cranfield 4718) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidobolus preissianus subsp. arcuatus replace: Lepidobolus preissianus subsp. 'arcuatus' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidosperma sp. A2 Island Flat (G.J. Keighery 7000) replace: Lepidosperma sp. A2 Island Flat (G.J.Keighery 7000) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Giant Terete Culms (S.D. Hopper 8631) replace: Lepidosperma sp. Giant Terete Culms (S.D.Hopper 8631) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. K Boorabbin (K.L. Wilson 2579) replace: Lepidosperma sp. K Boorabbin (K.L.Wilson 2579) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. U1 big heads (A.S. George 11294) replace: Lepidosperma sp. U1 big heads (A.S.George 11294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Z dark sheath (P.G. Wilson 10177) replace: Lepidosperma sp. Z dark sheath (P.G.Wilson 10177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema cervicorne replace: Leptosema cervicornu reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum sp. Peak Charles/Norseman (K.R. Newbey 5243) replace: Leptospermum sp. Peak Charles/Norseman (K.R.Newbey 5243) reason: Manual match to APC accepted name (Elizabeth Wenk, 2022-11-21) @@ -2936,208 +2946,208 @@ taxonomic_updates: - find: Leucanthemum xsuperbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon compressicarpus replace: Leucopogon compressicarpus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon inflexifolius replace: Leucopogon inflexifolius MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Badgingarra (R. Davis 421) replace: Leucopogon sp. Badgingarra (R.Davis 421) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Barren Range (A.S. George 10092) replace: Leucopogon sp. Barren Range (A.S.George 10092) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bifid Eneabba (M. Hislop 1927) replace: Leucopogon sp. Bifid Eneabba (M.Hislop 1927) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bindoon (F. Hort 2766) replace: Leucopogon sp. Bindoon (F.Hort 2766) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bonnie Hill (K.R. Newbey 9831) replace: Leucopogon sp. Bonnie Hill (K.R.Newbey 9831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Boyagin (M. Hislop 2825) replace: Leucopogon sp. Boyagin (M.Hislop 2825) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bremer Bay (K.R. Newbey 4667) replace: Leucopogon sp. Bremer Bay (K.R.Newbey 4667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Brookton (K. Kershaw & L. Kerrigan KK 2192) replace: Leucopogon sp. Brookton (K.Kershaw & L.Kerrigan KK2192) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bungulla (R.D. Royce 3435) replace: Leucopogon sp. Bungulla (R.D.Royce 3435) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Cape Arid (M. Paxman 50) replace: Leucopogon sp. Cape Arid (M.Paxman 50) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) - replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Clyde Hill (M.A. Burgman 1207) replace: Leucopogon sp. Clyde Hill (M.A.Burgman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coolgardie (M. Hislop & F. Hort MH 3197) replace: Leucopogon sp. Coolgardie (M.Hislop & F.Hort MH3197) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Corrigin (K. Kershaw KK 2091) replace: Leucopogon sp. Corrigin (K.Kershaw KK2091) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Darradup (R.D. Royce 2998) replace: Leucopogon sp. Darradup (R.D.Royce 2998) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Denmark (J.M. Powell 1167) replace: Leucopogon sp. Denmark (J.M.Powell 1167) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Flynn (F. Hort, J. Hort & A. Lowrie 859) replace: Leucopogon sp. Flynn (F.Hort, J.Hort & A.Lowrie 859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Gunapin (F. Hort 808) replace: Leucopogon sp. Gunapin (F.Hort 808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Howatharra (D. & N. McFarland 1046) replace: Leucopogon sp. Howatharra (D. & N.McFarland 1046) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ironcaps (N. Gibson & K. Brown 3070) replace: Leucopogon sp. Ironcaps (N.Gibson & K.Brown 3070) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kalbarri (J.M. Powell 1695) replace: Leucopogon sp. Kalbarri (J.M.Powell 1695) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kau Rock (M.A. Burgman 1126) replace: Leucopogon sp. Kau Rock (M.A.Burgman 1126) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lesueur (B. Evans 530) replace: Leucopogon sp. Lesueur (B.Evans 530) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lort River (M. Golding 3) replace: Leucopogon sp. Lort River (M.Golding 3) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Margaret River (J. Scott 207) replace: Leucopogon sp. Margaret River (J.Scott 207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mid West (J.S. Beard 7388) replace: Leucopogon sp. Mid West (J.S.Beard 7388) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moore River (M. Hislop 1695) replace: Leucopogon sp. Moore River (M.Hislop 1695) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moresby Range (S. Patrick 2614) replace: Leucopogon sp. Moresby Range (S.Patrick 2614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mount Heywood (M.A. Burgman 1211) replace: Leucopogon sp. Mount Heywood (M.A.Burgman 1211) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Murdoch (M. Hislop 1037) replace: Leucopogon sp. Murdoch (M.Hislop 1037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ongerup (A.S. George 16682) replace: Leucopogon sp. Ongerup (A.S.George 16682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) - replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Pingrup (W.E. Blackall 3010) replace: Leucopogon sp. Pingrup (W.E.Blackall 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Roberts Swamp (K.R. Newbey 8173) replace: Leucopogon sp. Roberts Swamp (K.R.Newbey 8173) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Salt Lake (G.F. Craig 3069) replace: Leucopogon sp. Salt Lake (G.F.Craig 3069) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. South Coast (K.R. Newbey 8213) replace: Leucopogon sp. South Coast (K.R.Newbey 8213) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Southern Granite (E.D. Middleton EDM 266) replace: Leucopogon sp. Southern Granite (E.D.Middleton EDM266) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Twertup (K.R. Newbey 10859) replace: Leucopogon sp. Twertup (K.Newbey 10859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Walpole (R.J. Cranfield 10940) replace: Leucopogon sp. Walpole (R.J.Cranfield 10940) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wandering (F. Hort 419) replace: Leucopogon sp. Wandering (F.Hort 419) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Warradarge (M. Hislop 1908) replace: Leucopogon sp. Warradarge (M.Hislop 1908) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wheatbelt (S. Murray 257) replace: Leucopogon sp. Wheatbelt (S.Murray 257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Whicher Range (G.J. Keighery 11763) replace: Leucopogon sp. Whicher Range (G.J.Keighery 11763) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Windy Harbour (A. Strid 21460) replace: Leucopogon sp. Windy Harbour (A.Strid 21460) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanchep (M. Hislop 1986) replace: Leucopogon sp. Yanchep (M.Hislop 1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanneymooning (F. Mollemans 3797) replace: Leucopogon sp. Yanneymooning (F.Mollemans 3797) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) + replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) + replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Leucopogon sulcatus replace: Leucopogon sp. [Leucopogon striatus] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -3146,445 +3156,450 @@ taxonomic_updates: - find: Lobelia rhombifolia de replace: Lobelia rhombifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium multiflorum x perenne replace: Lolium multiflorum x Lolium perenne reason: Manual alignment with canonical species name in APNI (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium perenne x rigidum replace: Lolium perenne subsp. rigidum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium xhubbardii replace: Lolium x hubbardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysinema ciliatum forma replace: Lysinema ciliatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Patience (C.P. Campbell 1052) replace: Maireana sp. Patience (C.P.Campbell 1052) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Adelong (G.J. Keighery 11825) replace: Malleostemon sp. Adelong (G.J.Keighery 11825) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooljarloo (B. Backhouse s.n. 16/11/88) replace: Malleostemon sp. Cooljarloo (B.Backhouse s.n. 16/11/88) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooloomia (S.D. Hopper 1353) replace: Malleostemon sp. Cooloomia (S.D.Hopper 1353) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Erangy Springs (M.E. Trudgen 12030) replace: Malleostemon sp. Erangy Springs (M.E.Trudgen 12030) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Hardabutt Rapids (D. Bellairs 1654A) replace: Malleostemon sp. Hardabutt Rapids (D.Bellairs 1654A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Kalbarri (L.A. Craven 7083) replace: Malleostemon sp. Kalbarri (L.A.Craven 7083) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Moonyoonooka (R.J. Cranfield 2947) replace: Malleostemon sp. Moonyoonooka (R.J.Cranfield 2947) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Mullewa (P. Winson B7365) replace: Malleostemon sp. Mullewa (P.Winson B7365) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Nerren Nerren (A. Payne 360) replace: Malleostemon sp. Nerren Nerren (A.Payne 360) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Officer Basin (D. Pearson 350) replace: Malleostemon sp. Officer Basin (D.Pearson 350) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Woolgorong Station (M. Officer 100) replace: Malleostemon sp. Woolgorong Station (M.Officer 100) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Yerina (S.J. Patrick 2728) replace: Malleostemon sp. Yerina (S.J.Patrick 2728) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp. Bremer (N. Gibson & M. Lyons 1776) replace: Marianthus sp. Bremer (N.Gibson & M.Lyons 1776) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. Mt Windell (S. van Leeuwen 846) replace: Maytenus sp. Mt Windell (S.van Leeuwen 846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meeboldina decipiens subsp. decipiens replace: Meeboldina decipiens MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Meeboldina decipiens subsp. decipiens + replace: Meeboldina decipiens MS + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Melaleuca incana subsp. Gingilup replace: Melaleuca incana subsp. Gingilup (N.Gibson & M.Lyons 593) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca sp. Dongolocking (G.J. Keighery & N. Gibson 2896) replace: Melaleuca sp. Dongolocking (G.J.Keighery & N.Gibson 2896) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Gorse (A.S. George 7224) replace: Melaleuca sp. Gorse (A.S.George 7224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca xarenicola replace: Melaleuca x arenicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita var. citrata replace: Mentha x piperita var. citrata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha xpiperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Merremia sp. B Kimberley Flora (B.J. Carter 533) replace: Merremia sp. B Kimberley Flora (B.J.Carter 533) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Boxwood (K.R. Newbey 4200) replace: Microcorys sp. Boxwood (K.R.Newbey 4200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Forrestania (V. English 2004) replace: Microcorys sp. Forrestiana (V.English 2004) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Mt Gibson (S. Patrick 2098) replace: Microcorys sp. Mt Gibson (S.Patrick 2098) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Microcorys sp. stellate (A. Strid 21885) - replace: Microcorys sp. stellate (A.Strid 21885) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Tarin Rock (E.J. Croxford 5251) replace: Microcorys sp. Tarin Rock (E.J.Croxford 5251) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Microcorys sp. stellate (A. Strid 21885) + replace: Microcorys sp. stellate (A.Strid 21885) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Micromyrtus racemosa var. Jingemarra replace: Micromyrtus racemosa var. Jingemarra (R.J.Cranfield 5253a) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus racemosa var. north-west replace: Micromyrtus racemosa var. north-west (R.J.Cranfield 2891) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus triptycha subsp. elata replace: Micromyrtus triptycha subsp. elata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. longiflora replace: Micromyrtus triptycha subsp. longiflora MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. triptycha replace: Micromyrtus triptycha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia bursarioides replace: Mirbelia bursarioides MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia cordifolia replace: Mirbelia cordifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia magentea replace: Mirbelia magentea MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Bursarioides (T.R. Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Carnarvon (J.S. Beard 6008) replace: Mirbelia sp. Carnarvon (J.S.Beard 6008) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Denham (W.E. Blackall 556) replace: Mirbelia sp. Denham (W.E.Blackall 556) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Helena & Aurora (B.J. Lepschi 2003) replace: Mirbelia sp. Helena & Aurora (B.J.Lepschi 2003) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) - replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Kalbarri (M.D. Crisp 6261) replace: Mirbelia sp. Kalbarri (M.D.Crisp 6261) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Magentea (T.E.H. Aplin 5976) replace: Mirbelia sp. Magentea (T.E.H.Aplin 5976) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Mt Heywood (T.E.H. Aplin 4154) replace: Mirbelia sp. Mt Heywood (T.E.H.Aplin 4154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Ternata (M.D. Crisp & L.G. Cook MDC 9267) replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Zuytdorp (G.J. Keighery & N. Gibson 1688) replace: Mirbelia sp. Zuytdorp (G.J.Keighery & N.Gibson 1688) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) + replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Mirbelia ternata replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca oligarrhenoides subsp. Gibson replace: Monotoca oligarrhenoides subsp. Gibson (R.D.Royce 3573) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. A Kimberley Flora (K.F. Kenneally 7909) replace: Mukia sp. A Kimberley Flora (K.F.Kenneally 7909) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. D Flora of Australia (A.A. Mitchell PRP 1121) replace: Mukia sp. D Flora of Australia (A.A.Mitchell PRP 1121) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia sp. Hamersley Station (A.A. Mitchell PRP 1479) replace: Oldenlandia sp. Hamersley Station (A.A.Mitchell PRP 1479) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia brachyglossa replace: Olearia brachyglossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. dampieri replace: Olearia dampieri MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. eremicola replace: Olearia dampieri subsp. eremicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ornithogalum longebracteatum replace: Ornithogalum longibracteatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion microphyllum replace: Otion microphyllum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion simplicifolium replace: Otion simplicifolium MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion tortile replace: Otion tortile MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus spiralis var. septemloculatus replace: Pandanus spiralis var. septemloculatus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas -- find: Patersonia drummondii subsp. drummondii - replace: Patersonia drummondii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Patersonia drummondii subsp. Northern replace: Patersonia drummondii subsp. Northern (R.D.Royce UWA 777) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Patersonia drummondii subsp. drummondii + replace: Patersonia drummondii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Pelargonium australe subsp. australe ms replace: Pelargonium australe var. australe reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium australe subsp. drummondii replace: Pelargonium australe subsp. drummondii MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pelargonium littorale subsp. littorale replace: Pelargonium littorale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xasperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xdomesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pentalepis sp. Mt House (E.M. Bennett 1877) replace: Pentalepis sp. Mt House (E.M.Bennett 1877) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T. Burbidge & A. Kanis 8158) replace: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T.Burbidge & A.Kanis 8158) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S. Weston 12768) replace: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S.Weston 12768) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile chrysantha subsp. Watheroo replace: Petrophile chrysantha subsp. Watheroo (K.M.Allan 57) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petrophile squamata subsp. squamata replace: Petrophile squamata subsp. squamata MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petunia xhybrida replace: Petunia x hybrida reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Mt Gibbs (G.F. Craig 6658) replace: Phebalium sp. Mt Gibbs (G.F.Craig 6658) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Yerilgee Sandplain (J. Jackson 223) replace: Phebalium sp. Yerilgee Sandplain (J.Jackson 223) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca sp. Latham (F. Keast L4B 043) replace: Philotheca sp. Latham (F.Keast L4B 043) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca spicata subsp. Moore River National Park replace: Philotheca spicata subsp. Moore River National Park (G. & D.Woodman Op 47) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus sp. D Kimberley Flora (C.R. Dunlop 5302) replace: Phyllanthus sp. D Kimberley Flora (C.R.Dunlop 5302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilostyles sp. Northern Sandplains (P. Armstrong s.n. PERTH 06590179) replace: Pilostyles sp. Northern Sandplains (P.Armstrong s.n. PERTH 06590179) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Tarin Rock (E.J. Croxford 2118) replace: Pimelea sp. Tarin Rock (E.J.Croxford 2118) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Hamersley (M.E. Trudgen 11207) replace: Plantago sp. Hamersley (M.E.Trudgen 11207) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Mt Magnet (A.S. George 6793) replace: Plantago sp. Mt Magnet (A.S.George 6793) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus xhispanica replace: Platanus x hispanica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Eneabba (R. Hnatiuk 770001) replace: Platysace sp. Eneabba (R.Hnatiuk 770001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kalbarri (D. & B. Bellairs 1383) replace: Platysace sp. Kalbarri (D. & B.Bellairs 1383) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kennedy (P.G. Wilson 8450) replace: Platysace sp. Kennedy (P.G.Wilson 8450) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Stirling (J.M. Fox 88/262) replace: Platysace sp. Stirling (J.M.Fox 88/262) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea sp. B Kimberley Flora (K.F. Kenneally 9526A) replace: Pluchea sp. B Kimberley Flora (K.F.Kenneally 9526A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Carnarvon Range (D.J. Edinger Nats 33) replace: Podolepis sp. Carnarvon Range (D.J.Edinger Nats 33) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Great Victoria Desert (A.S. George 8219) replace: Podolepis sp. Great Victoria Desert (A.S.George 8219) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea sp. A Kimberley Flora (K.F. Kenneally 8887) replace: Polycarpaea sp. A Kimberley Flora (K.F.Kenneally 8887) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. A Kimberley Flora (K.F. Kenneally 7752) replace: Polygala sp. A Kimberley Flora (K.F.Kenneally 7752) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. B Kimberley Flora (T.E.H. Aplin et al. 715) replace: Polygala sp. B Kimberley Flora (T.E.H.Aplin et al. 715) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria sp. A Kimberley Flora (T.E.H. Aplin et al. 418) replace: Polymeria sp. A Kimberley Flora (T.E.H.Aplin et al. 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. desert (A.S. George 11968) replace: Pomax sp. desert (A.S.George 11968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poranthera sp. Kings Park (R.L. Barrett 2958) replace: Poranthera sp. Kings Park (R.L.Barrett 2958) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -3593,267 +3608,267 @@ taxonomic_updates: - find: Pseudactinia sp. Bruce Rock (J. Buegge D36) replace: Pseudactinia sp. Bruce Rock (J.Buegge D36) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bungalbin Hill (F.H. & M.P. Mollemans 3069) replace: Pseudactinia sp. Bungalbin Hill (F.H. & M.P.Mollemans 3069) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon sp. A Kimberley Flora (B.J. Carter 599) replace: Pterocaulon sp. A Kimberley Flora (B.J.Carter 599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. broad petals (S.D. Hopper 4429) - replace: Pterostylis sp. broad petals (S.D.Hopper 4429) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Arid (G. Brockman GBB 263) replace: Pterostylis sp. Cape Arid (G.Brockman GBB 263) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Le Grand (I. Solomon 550) replace: Pterostylis sp. Cape Le Grand (I.Solomon 550) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. Helena River (G. Brockman GBB 340) + replace: Pterostylis sp. Helena River (G.Brockman GBB 340) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Karri forest (W. Jackson BJ270) + replace: Pterostylis sp. Karri forest (W.Jackson BJ270) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Northampton (S.D. Hopper 3349) + replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) + replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) + replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) + replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. broad petals (S.D. Hopper 4429) + replace: Pterostylis sp. broad petals (S.D.Hopper 4429) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Pterostylis sp. cauline leaves (N. Gibson & M.N. Lyons 1490) replace: Pterostylis sp. cauline leaves (N.Gibson & M.N.Lyons 1490) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. clubbed snail orchid (R. Davis 8088) replace: Pterostylis sp. clubbed snail orchid (R.Davis 8088) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. crinkled leaf (G.J. Keighery 13426) replace: Pterostylis sp. crinkled leaf (G.J.Keighery 13426) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. dainty brown (N. Gibson & M. Lyons 3690) replace: Pterostylis sp. dainty brown (N.Gibson & M.Lyons 3690) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. elegant snail orchid (G. Brockman GBB 1194) replace: Pterostylis sp. elegant snail orchid (G.Brockman GBB 1194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. exserted labellum (A.C. Beauglehole 12194) replace: Pterostylis sp. exserted labellum (A.C.Beauglehole 12194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. extended dorsal sepal (G. Paull 731) replace: Pterostylis sp. extended dorsal sepal (G.Paull 731) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. fragile (S. Barrett 553) replace: Pterostylis sp. fragile (S.Barrett 553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. granite (W. Jackson BJ351) replace: Pterostylis sp. granite (W.Jackson BJ351) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Helena River (G. Brockman GBB 340) - replace: Pterostylis sp. Helena River (G.Brockman GBB 340) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. inland (A.C. Beauglehole 11880) replace: Pterostylis sp. inland (A.C.Beauglehole 11880) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Karri forest (W. Jackson BJ270) - replace: Pterostylis sp. Karri forest (W.Jackson BJ270) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. late flowering (W. Jackson BJ298) replace: Pterostylis sp. late flowering (W.Jackson BJ298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. limestone (B.J. Keighery & G.J. Keighery 65) replace: Pterostylis sp. limestone (B.J.Keighery & G.J.Keighery 65) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. mid-west coast (G. Brockman GBB134) replace: Pterostylis sp. mid-west coast (G.Brockman GBB134) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. miniature (J.R. Wheeler 3298) replace: Pterostylis sp. miniature (J.R.Wheeler 3298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Northampton (S.D. Hopper 3349) - replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) - replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. red flowered (W. Jackson BJ269) replace: Pterostylis sp. red flowered (W.Jackson BJ269) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. robust (W. Jackson BJ294) replace: Pterostylis sp. robust (W.Jackson BJ294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. scooped sepals (G. Brockman GBB386) replace: Pterostylis sp. scooped sepals (G.Brockman GBB386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. short sepals (W. Jackson BJ259) replace: Pterostylis sp. short sepals (W.Jackson BJ259) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) - replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. small stature (W. Jackson BJ303) replace: Pterostylis sp. small stature (W.Jackson BJ303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) - replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. striped sepal greenhood (G. Brockman GBB355) replace: Pterostylis sp. striped sepal greenhood (G.Brockman GBB355) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. yellow eared (W. Jackson BJ359) replace: Pterostylis sp. yellow eared (W.Jackson BJ359) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus humilis subsp. humilis replace: Ptilotus humilis var. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus humilis subsp. parviflorus replace: Ptilotus humilis var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus sp. Beaufort River (G.J. Keighery 16554) replace: Ptilotus sp. Beaufort River (G.J.Keighery 16554) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Burnerbinmah (S. Patrick 2787) replace: Ptilotus sp. Burnerbinmah (S.Patrick 2787) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Mt Narryer (A.S. George 17484) replace: Ptilotus sp. Mt Narryer (A.S.George 17484) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Northampton (R. Davis 10952) replace: Ptilotus sp. Northampton (R.Davis 10952) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Porongurup (R. Davis 10805) replace: Ptilotus sp. Porongurup (R.Davis 10805) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Puccinellia sp. Warren Road (M.N. Lyons 2710) replace: Puccinellia sp. Warren Road (M.N.Lyons 2710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Kundip (G.F. Craig 6008) replace: Pultenaea sp. Kundip (G.F.Craig 6008) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (J.S. Beard 7827) replace: Pultenaea sp. Mt Lesueur (J.S.Beard 7827) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (L.A. Orthia 86) replace: Pultenaea sp. Mt Lesueur (L.A.Orthia 86) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. southern (L.A. Orthia 39) replace: Pultenaea sp. southern (L.A.Orthia 39) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia sp. Watheroo (R.J. Cranfield & P.J. Spencer 8183) replace: Rhagodia sp. Watheroo (R.J.Cranfield & P.J.Spencer 8183) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe pollackii replace: Rhodanthe polakii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe sp. Overlander (P.S. Short 2096) replace: Rhodanthe sp. Overlander (P.S.Short 2096) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. A Kimberley Flora (C.R. Dunlop 5329) replace: Rhynchospora sp. A Kimberley Flora (C.R.Dunlop 5329) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. B Kimberley Flora (A.S. Weston 12363) replace: Rhynchospora sp. B Kimberley Flora (A.S.Weston 12363) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus xloganobaccus replace: Rubus x loganobaccus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruellia sp. A Kimberley Flora (K.F. Kenneally 9007) replace: Ruellia sp. A Kimberley Flora (K.F.Kenneally 9007) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia apella replace: Rulingia apella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia sp. Trigwell Bridge (R. Smith s.n. 20.6.89) replace: Rulingia sp. Trigwell Bridge (R.Smith s.n. 20.6.1989) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xjohannis-moorei replace: Rumex x johannis-moorei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xmuretii replace: Rumex x muretii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpratensis replace: Rumex x pratensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpseudopulcher replace: Rumex x pseudopulcher reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xschultzei replace: Rumex x schultzei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruschia macowanii replace: Ruschia sp. [Ruschia macowanii; WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3862,69 +3877,69 @@ taxonomic_updates: - find: Salvinia xmolesta replace: Salvinia x molesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Millstream (M.I.H. Brooker 2076) replace: Samolus sp. Millstream (M.I.H.Brooker 2076) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Shark Bay (M.E. Trudgen 7410) replace: Samolus sp. Shark Bay (M.E.Trudgen 7410) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sauropus sp. Woolgorong (M. Officer s.n. 10/8/94) replace: Sauropus sp. Woolgorong (M.Officer s.n. 10/8/94) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola humifusa de replace: Scaevola humifusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de replace: Scaevola repens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de var. repens replace: Scaevola repens var. repens reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola repens subsp. Northern Sandplains replace: Scaevola repens subsp. Northern Sandplains (R.J.Cranfield & P.J.Spencer 8445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola repens var. angustifolia de replace: Scaevola repens var. angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola sp. Hamersley Range basalts (S. van Leeuwen 3675) replace: Scaevola sp. Hamersley Range basalts (S.van Leeuwen 3675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Lake Cairlocup (K. Newbey 9834) replace: Scaevola sp. Lake Cairlocup (K.Newbey 9834) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sesquispiculus replace: Schoenus sesquispicula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A1 Boorabbin (K.L. Wilson 2581) replace: Schoenus sp. A1 Boorabbin (K.L.Wilson 2581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A2 Kulin (B.G. Briggs 7939) replace: Schoenus sp. A2 Kulin (B.G.Briggs 7939) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 Ciliate Sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Beaufort (G.J. Keighery 6291) replace: Schoenus sp. [Schoenus sp. Beaufort (G.J. Keighery 6291); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3933,176 +3948,176 @@ taxonomic_updates: - find: Schoenus sp. Bullsbrook (J.J. Alford 915) replace: Schoenus sp. Bullsbrook (J.J.Alford 915) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Cape Riche Cushion (G.J. Keighery 9922) replace: Schoenus sp. Cape Riche Cushion (G.J.Keighery 9922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. G Broad Sheath (K.L. Wilson 2633) replace: Schoenus sp. G Broad Sheath (K.L.Wilson 2633) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grassy (E. Gude & J. Harvey 250) replace: Schoenus sp. Grassy (E.Gude & J.Harvey 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grey Rhizome (K.L. Wilson 2922) replace: Schoenus sp. Grey Rhizome (K.L.Wilson 2922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Jindong (R.D. Royce 2485) replace: Schoenus sp. Jindong (R.D.Royce 2485) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Kalbarri (K.R. Newbey 9352) replace: Schoenus sp. Kalbarri (K.R.Newbey 9352) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Mt Barker (G.J. Keighery 9679) replace: Schoenus sp. Mt Barker (G.J.Keighery 9679) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Murchison (K.L. Wilson 2647) replace: Schoenus sp. Murchison (K.L.Wilson 2647) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Schoenus sp. smooth culms (K.R. Newbey 7823) - replace: Schoenus sp. smooth culms (Newbey 7823) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Stirling (G.J. Keighery 3427) replace: Schoenus sp. Stirling (G.J.Keighery 3427) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Toodyay (G.J. Keighery & N. Gibson 2918) replace: Schoenus sp. Toodyay (G.J.Keighery & N.Gibson 2918) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Waroona (G.J. Keighery 12235) replace: Schoenus sp. Waroona (G.J.Keighery 12235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Schoenus sp. smooth culms (K.R. Newbey 7823) + replace: Schoenus sp. smooth culms (Newbey 7823) + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-21) + taxonomic_resolution: species - find: Schoenus subflavus subsp. hispid culms replace: Schoenus subflavus subsp. hispid culms (K.R.Newbey 8278) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. long leaves replace: Schoenus subflavus subsp. long leaves (K.L.Wilson 2865) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. subflavus replace: Schoenus subflavus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ajana (T.A. Halliday 137) replace: Scholtzia sp. Ajana (T.A.Halliday 137) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu (M.E. Trudgen 2218) replace: Scholtzia sp. Binnu (M.E.Trudgen 2218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu East Road (M.E. Trudgen 12013) replace: Scholtzia sp. Binnu East Road (M.E.Trudgen 12013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. East Yuna (A.C. Burns 6) replace: Scholtzia sp. East Yuna (A.C.Burns 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eneabba (S. Maley 8) replace: Scholtzia sp. Eneabba (S.Maley 8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eradu (R.D. Royce 8016) replace: Scholtzia sp. Eradu (R.D.Royce 8016) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eurardy (J.S. Beard 6886) replace: Scholtzia sp. Eurardy (J.S.Beard 6886) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Folly Hill (M.E. Trudgen 12097) replace: Scholtzia sp. Folly Hill (M.E.Trudgen 12097) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Galena (W.E. Blackall 4728) replace: Scholtzia sp. Galena (W.E.Blackall 4728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Geraldton (F. Lullfitz L 3216) replace: Scholtzia sp. Geraldton (F.Lullfitz L 3216) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Gunyidi (J.D. Briggs 1721) replace: Scholtzia sp. Gunyidi (J.D.Briggs 1721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kalbarri (N. Hoyle 623) replace: Scholtzia sp. Kalbarri (N.Hoyle 623) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kojarena (A.M. Ashby 1904) replace: Scholtzia sp. Kojarena (A.M.Ashby 1904) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Murchison River (A.S. George 7098) replace: Scholtzia sp. Murchison River (A.S.George 7908) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Northampton (A. Strid 20714) replace: Scholtzia sp. Northampton (A.Strid 20174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Prowaka Springs (R.J. Cranfield & P. Spencer 8083) replace: Scholtzia sp. Prowaka Springs (R.J.Cranfield & P.Spencer RJC 8083) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Red Bluff (A. Gunness 2373) replace: Scholtzia sp. Red Bluff (A.Gunness 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ross Graham Lookout (S. Maley 6) replace: Scholtzia sp. Ross Graham Lookout (S.Maley 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Shark Bay (M.E. Trudgen 7429) replace: Scholtzia sp. Shark Bay (M.E.Trudgen 7429) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S. Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S.J.Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Whelarra (M.E. Trudgen 12018) replace: Scholtzia sp. Whelarra (M.E.Trudgen 12018) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Yandanooka (R. Soullier 646) replace: Scholtzia sp. Yandanooka (R.Soullier 646) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. B Kimberley Flora (C.R. Dunlop 5409) replace: Scleria sp. B Kimberley Flora (C.R.Dunlop 5409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. C Kimberley Flora (K.F. Kenneally 4873) replace: Scleria sp. C Kimberley Flora (K.F.Kenneally 4873) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437) replace: Sclerolaena sp. [Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437); WAH_2022_2] @@ -4112,100 +4127,96 @@ taxonomic_updates: - find: Sclerolaena xgeorgei replace: Sclerolaena georgei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xartemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xcoriacea replace: Senna artemisioides subsp. x coriacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xsturtii replace: Senna artemisioides subsp. x sturtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa subsp. xluerssenii replace: Senna glutinosa subsp. x luerssenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sp. Austin (A. Strid 20210) replace: Senna sp. Austin (A.Strid 20210) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Billabong (J.D. Alonzo 721) replace: Senna sp. Billabong (J.D.Alonzo 721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Karijini (M.E. Trudgen 10392) replace: Senna sp. Karijini (M.E.Trudgen 10392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Meekatharra (E. Bailey 1-26) replace: Senna sp. Meekatharra (E.Bailey 1-26) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Tamala (M.E. Trudgen 7334A) replace: Senna sp. Tamala (M.E.Trudgen 7334A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. A Kimberley Flora (P.A. Fryxell & L.A. Craven 3900) replace: Sida sp. A Kimberley Flora (P.A.Fryxell & L.A.Craven 3900) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Articulation below (A.A. Mitchell PRP 1605) replace: Sida sp. Articulation below (A.A.Mitchell PRP1605) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Barlee Range (S. van Leeuwen 1642) replace: Sida sp. Barlee Range (S.van Leeuwen 1642) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bungle Bungles (M.I. Blackwell 219) replace: Sida sp. Bungle Bungles (M.I.Blackwell 219) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C Kimberley Flora (T.E.H. Aplin 4982) replace: Sida sp. C Kimberley Flora (T.E.H.Aplin 4982) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Carnarvon (P.S. Short 2492) replace: Sida sp. Carnarvon (P.S.Short 2492) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. dark green fruits (S. van Leeuwen 2260) - replace: Sida sp. dark green fruits (S.van Leeuwen 2260) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Excedentifolia (J.L. Egan 1925) replace: Sida sp. Excedentifolia (J.L.Egan 1925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces glabrous (H.N. Foote 32) replace: Sida sp. golden calyces glabrous (H.N.Foote 32) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces pubescent (G.J. Leach 1966) replace: Sida sp. Golden calyces pubescent (G.J.Leach 1966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hamersley Range (K. Newbey 10692) replace: Sida sp. Hamersley Range (K.Newbey 10692) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. L (A.M. Ashby 4202) replace: Sida sp. L (A.M.Ashby 4202) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (A.A. Mitchell PRP 1543) replace: Sida sp. Pilbara (A.A.Mitchell PRP1543) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (S. van Leeuwen 4377) replace: Sida sp. [Sida sp. Pilbara (S. van Leeuwen 4377); WAH_2022_2] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -4214,129 +4225,133 @@ taxonomic_updates: - find: Sida sp. Pindar (A. Mitchell 3585) replace: Sida sp. Pindar (A.A.Mitchell 3585) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat (B.J. Carter 626) replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) - replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Shovelanna Hill (S. van Leeuwen 3842) replace: Sida sp. Shovelanna Hill (S.van Leeuwen 3842) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. Supplejack Station (T.S. Henshall 2345) + replace: Sida sp. Supplejack Station (T.S.Henshall 2345) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Watarrka (D.E. Albrecht 8672) + replace: Sida sp. Watarrka (D.E.Albrecht 8672) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Western sand dunes (P.K. Latz 11980) + replace: Sida sp. Western sand dunes (P.K.Latz 11980) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. dark green fruits (S. van Leeuwen 2260) + replace: Sida sp. dark green fruits (S.van Leeuwen 2260) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) + replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/1990) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/90) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Supplejack Station (T.S. Henshall 2345) - replace: Sida sp. Supplejack Station (T.S.Henshall 2345) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. tiny glabrous fruit (A.A. Mitchell PRP1152) replace: Sida sp. tiny glabrous fruit (A.A.Mitchell PRP1152) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. verrucose glands (F.H. Mollemans 2423) replace: Sida sp. verrucose glands (F.H.Mollemans 2423) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Watarrka (D.E. Albrecht 8672) - replace: Sida sp. Watarrka (D.E.Albrecht 8672) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Western sand dunes (P.K. Latz 11980) - replace: Sida sp. Western sand dunes (P.K.Latz 11980) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp. Boomerang Bay (K.F. Kenneally 10021) replace: Solanum sp. Boomerang Bay (K.F.Kenneally 10021) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum bicolor subsp. xdrummondii replace: Sorghum bicolor reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum xalmum replace: Sorghum x almum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spergularia sp. 5 Leeman (G.J. Keighery & J.J. Alford 488) replace: Spergularia sp. 5 Leeman (G.J.Keighery & J.J.Alford 488) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphenotoma sp. Stirling Range (P.G. Wilson 4235) replace: Sphenotoma sp. Stirling Range (P.G.Wilson 4235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spinifex xalterniflorus replace: Spinifex x alterniflorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia muricata subsp. annual replace: Stackhousia muricata subsp. Annual (W.R.Barker 2172) reason: Manual alignment with canonical subspecies name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Stackhousia sp. swollen gynophore (W.R. Barker 2041) replace: Stackhousia sp. Swollen gynophore (W.R.Barker 2041) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Battle Hill (A.L. Payne 1006) replace: Stemodia sp. Battle Hill (A.L.Payne 1006) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Onslow (A.A. Mitchell 76/148) replace: Stemodia sp. Onslow (A.A.Mitchell 76/148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium egralliforme replace: Stylidium egralliforme MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Bindoon (K.F. Kenneally 11405) replace: Stylidium sp. Bindoon (K.F.Kenneally 11405) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Boulder Rock (A.H. Burbidge 2536) replace: Stylidium sp. Boulder Rock (A.H.Burbidge 2536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Dewars Pool (K.F. Kenneally 11400) replace: Stylidium sp. Dewars Pool (K.F.Kenneally 11400) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker (E.J. Croxford 1906) replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Hamersley Station (A.A. Mitchell 196) replace: Swainsona sp. Hamersley Station (A.A.Mitchell 196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Shark Bay (M.E. Trudgen 7588) replace: Swainsona sp. Shark Bay (M.E.Trudgen 7588) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Fairbridge Farm (D. Papenfus 696) replace: Synaphea sp. Fairbridge Farm (D.Papenfus 696) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Jilakin Flat Rocks Rd (R. Butcher et. al RB200) replace: Synaphea sp. Jilakin Flat Rocks Rd (R.Butcher et al. RB200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Kwornicup (D. Trenowden 429) replace: Synaphea sp. [Synaphea sp. Kwornicup (D.Trenowden 429); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -4350,7 +4365,7 @@ taxonomic_updates: - find: Synaphea sp. Pinjarra (R. Davis 6578) replace: Synaphea sp. Pinjarra (R.Davis 6578) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Pinjarra Plain (A.S. George 17182) replace: Synaphea sp. [Synaphea sp. Pinjarra Plain (A.S. George 17182)] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -4359,7 +4374,7 @@ taxonomic_updates: - find: Synaphea sp. Redgate Road (J. Scott 16) replace: Synaphea sp. Redgate Road (J.Scott 16) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Woodanilling (G.J. Keighery & N. Gibson 4614) replace: Synaphea sp. [Synaphea sp. Woodanilling (G.J. Keighery & N. Gibson 4614); WAH_2022_2] @@ -4374,352 +4389,352 @@ taxonomic_updates: - find: Tecticornia mellaria replace: Tecticornia mellarium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Gunyidi (M.N. Lyons 2607) replace: Tecticornia sp. Gunyidi (M.N.Lyons 2607) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Roy Hill (H. Pringle 62) replace: Tecticornia sp. Roy Hill (H.Pringle 62) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Tephrosia rosea var. glabrior - replace: Tephrosia rosea var. glabrior MS - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Tephrosia rosea var. Napier Range replace: Tephrosia rosea var. Napier Range (C.R.Dunlop 7760 & B.K.Simon) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Tephrosia rosea var. glabrior + replace: Tephrosia rosea var. glabrior MS + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: varietas - find: Tephrosia rosea var. venulosa replace: Tephrosia rosea var. venulosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia sp. B Kimberley Flora (C.A. Gardner 7300) replace: Tephrosia sp. B Kimberley Flora (C.A.Gardner 7300) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Bungaroo Creek (M.E. Trudgen 11601) replace: Tephrosia sp. Bungaroo Creek (M.E.Trudgen 11601) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. C Kimberley Flora (K.F. Kenneally 5599) replace: Tephrosia sp. C Kimberley Flora (K.F.Kenneally 5599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Carnarvon (J.H. Ross 2681) replace: Tephrosia sp. Carnarvon (J.H.Ross 2681) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Cathedral Gorge (F.H. Mollemans 2420) replace: Tephrosia sp. Cathedral Gorge (F.H.Mollemans 2420) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Central (P.K. Latz 17037) replace: Tephrosia sp. Central (P.K.Latz 17037) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) - replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. D Kimberley Flora (R.D. Royce 1848) replace: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. deserts (J.R. Maconochie 1403) - replace: Tephrosia sp. deserts (J.R.Maconochie 1403) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Dunes (J.R. Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Durack River (C.A. Gardner 9938) replace: Tephrosia sp. Durack River (C.A.Gardner 9938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. E Kimberley Flora (C.A. Gardner 9937) replace: Tephrosia sp. E Kimberley Flora (C.A.Gardner 9937) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. F Kimberley Flora (B.R. Maslin 5139) replace: Tephrosia sp. F Kimberley Flora (B.R.Maslin 5139) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. G Kimberley Flora (G.J. Keighery 4828) replace: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kennedy Range (J.S. Beard 4392) replace: Tephrosia sp. Kennedy Range (J.S.Beard 4392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kununurra (T. Handasyde TH00 250) replace: Tephrosia sp. Kununurra (T.Handesyde TH00 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Magazine Hill (P. Jones 365) replace: Tephrosia sp. Magazine Hill (P.Jones 365) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Mistake Creek (A.C. Beauglehole 54424) replace: Tephrosia sp. Mistake Creek (A.C.Beauglehole 54424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) + replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tephrosia sp. Newman (A.A. Mitchell PRP 29) replace: Tephrosia sp. Newman (A.A.Mitchell PRP 29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Northern (K.F. Kenneally 11950) replace: Tephrosia sp. Northern (K.F.Kenneally 11950) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) - replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Onslow (K.R. Newbey 10571) replace: Tephrosia sp. Onslow (K.R.Newbey 10571) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Pentecost River (I.D. Cowie 4168) replace: Tephrosia sp. Pentecost River (I.D.Cowie 4168) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Saw Ranges (D. Kabay s.n. PERTH 06720544) replace: Tephrosia sp. Saw Ranges (D.Kabay s.n. PERTH 06720544) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) - replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Willowra (G.M. Chippendale 4809) replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) + replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. deserts (J.R. Maconochie 1403) + replace: Tephrosia sp. deserts (J.R.Maconochie 1403) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) + replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tetratheca sp. Granite (S. Patrick SP1224) replace: Tetratheca sp. Granite (S.Patrick SP1224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Kent River (B.G. Hammersley 1791) replace: Tetratheca sp. Kent River (B.G.Hammersley 1791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Mt Solus (F. Obbens 307/98) replace: Tetratheca sp. Mt Solus (F.Obbens 307/98) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium fililobum subsp. fililobum replace: Teucrium fililobum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium fililobum subsp. glandular replace: Teucrium fililobum subsp. glandular (W.Rogerson 233) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium sp. Balladonia (K.R. Newbey 7380) replace: Teucrium sp. Balladonia (K.R.Newbey 7380) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Teucrium sp. dwarf (R. Davis 8813) - replace: Teucrium sp. dwarf (R.Davis 8813) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Norseman (T.E.H. Aplin 1851) replace: Teucrium sp. Norseman (T.E.H.Aplin 1851) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Sturt Creek (A.A. Mitchell 5536) replace: Teucrium sp. Sturt Creek (A.A.Mitchell 5536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Teucrium sp. dwarf (R. Davis 8813) + replace: Teucrium sp. dwarf (R.Davis 8813) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Thelymitra sp. Brookton (A.S. George 11631) replace: Thelymitra sp. Brookton (A.S.George 11631) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Esperance (N.S. Lander 1080) replace: Thelymitra sp. Esperance (N.S.Lander 1080) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Slender Sun Orchid (A.R. Annels 2884) replace: Thelymitra sp. Slender Sun Orchid (A.R.Annels 2884) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Hamersley Station (M.E. Trudgen 11431) replace: Themeda sp. Hamersley Station (M.E.Trudgen 11431) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Mt Barricade (M.E. Trudgen 2471) replace: Themeda sp. Mt Barricade (M.E.Trudgen 2471) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia purpurea x solanacea replace: Thomasia purpurea x Thomasia solanacea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Arthur River (H.F. & M. Broadbent 1409) replace: Thomasia sp. Arthur River (H.F. & M.Broadbent 1409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Big Brook (M. Koch 2373) replace: Thomasia sp. Big Brook (M.Koch 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Gingin (F. & J. Hort 1511) replace: Thomasia sp. Gingin (F. & J.Hort 1511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Green Hill (S. Paust 1322) replace: Thomasia sp. Green Hill (S.Paust 1322) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Lesueur (M. Hislop 4217) replace: Thomasia sp. Lesueur (M.Hislop 4217) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Merredin (M.B. Mills 11) replace: Thomasia sp. Merredin (M.B.Mills 11) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Salmon Gums (C.A. Gardner s.n. PERTH 02708639) replace: Thomasia sp. Salmon Gums (C.A.Gardner s.n. PERTH 02708639) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Toolbrunup (G.J. Keighery 9895) replace: Thomasia sp. Toolbrunup (G.J.Keighery 9895) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Vasse (C. Wilkins & K. Shepherd CW 581) replace: Thomasia sp. Vasse (C.Wilkins & K.Shepherd CW581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia xformosa replace: Thomasia x formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene glaucosa replace: Thryptomene glaucosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene ninghanensis replace: Thryptomene ninghanensis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Carrarang (M.E. Trudgen 7420) replace: Thryptomene sp. Carrarang (M.E.Trudgen 7420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eagle Gorge (A.G. Gunness 2360) replace: Thryptomene sp. Eagle Gorge (A.G.Gunness 2360) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. East Yuna (J.W. Green 4639) replace: Thryptomene sp. East Yuna (J.W.Green 4639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eneabba (R.J. Cranfield 8433) replace: Thryptomene sp. Eneabba (R.J.Cranfield 8433) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eurardy (D. & B. Bellairs 1649) replace: Thryptomene sp. Eurardy (D. & B.Bellairs 1649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Geraldton (H. Demarz 5145) replace: Thryptomene sp. Geraldton (H.Demarz 5145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Lancelin (M.E. Trudgen 14000) replace: Thryptomene sp. Lancelin (M.E.Trudgen 14000) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Moresby Range (A.S. George 14873) replace: Thryptomene sp. Moresby Range (A.S.George 14873) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Steep Point (M.E. Trudgen 7421) replace: Thryptomene sp. Steep Point (M.E.Trudgen 7421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Tamala (M.E. Trudgen 7384) replace: Thryptomene sp. Tamala (M.E.Trudgen 7384) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Yuna Reserve (A.C. Burns 100) replace: Thryptomene sp. Yuna Reserve (A.C.Burns 100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Badgingarra (E.A. Griffin 2511) replace: Thysanotus sp. Badgingarra (E.A.Griffin 2511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Desert East of Newman (R.P. Hart 964) replace: Thysanotus sp. Desert East of Newman (R.P.Hart 964) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Eremaean (S. van Leeuwen 1067) replace: Thysanotus sp. Eremaean (S.van Leeuwen 1067) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Great Victoria Desert (A.S. George 8406) replace: Thysanotus sp. Great Victoria Desert (A.S.George 8406) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Kalbarri (D. & B. Bellairs 1523 A) replace: Thysanotus sp. Kalbarri (D. & B.Bellairs 1523 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Twining Wheatbelt (N.H. Brittan 81/29) replace: Thysanotus sp. Twining Wheatbelt (N.H.Brittan 81/29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema oxycalyptra var. oxycalyptra replace: Trianthema oxycalyptrum var. oxycalyptrum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tribonanthes sp. Lake Muir (G.J. Keighery & N. Gibson 2134) replace: Tribonanthes sp. Lake Muir (G.J.Keighery & N.Gibson 2134) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Koolan Island (K.F. Kenneally 8278) replace: Tribulopis sp. Koolan Island (K.F.Kenneally 8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Mitchell Plateau (K.F. Kenneally 7935) replace: Tribulopis sp. Mitchell Plateau (K.F.Kenneally 7935) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. long-styled eichlerianus (A.S. George 10666) replace: Tribulus sp. long-styled eichlerianus (A.S.George 10666) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium exile replace: Trichanthodium exilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichocline sp. Treeton (B.J. Keighery & N. Gibson 564) replace: Trichocline sp. Treeton (B.J.Keighery & N.Gibson 564) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Geraldton (G.J. Keighery 10461) replace: Tricoryne sp. Geraldton (G.J.Keighery 10461) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211) replace: Tricoryne sp. [Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211); WAH_2022_2] @@ -4729,141 +4744,126 @@ taxonomic_updates: - find: Tricoryne sp. Kimberley (K.F. Kenneally 4857) replace: Tricoryne sp. Kimberley (K.F.Kenneally 4857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Morawa (G.J. Keighery & N. Gibson 6759) replace: Tricoryne sp. Morawa (G.J.Keighery & N.Gibson 6759) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Mullewa (G.J. Keighery 12080) replace: Tricoryne sp. Mullewa (G.J.Keighery 12080) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. South Coast (T.E.H. Aplin 2653) replace: Tricoryne sp. South Coast (T.E.H.Aplin 2653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Wongan Hills (B.H. Smith 794) replace: Tricoryne sp. Wongan Hills (B.H.Smith 794) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. A Flora of Australia (G.J. Keighery 2477) replace: Triglochin sp. A Flora of Australia (G.J.Keighery 2477) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. B Flora of Australia (P.G. Wilson 4294) replace: Triglochin sp. B Flora of Australia (P.G.Wilson 4294) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. C Flora of Australia (P.G. Wilson 8811) replace: Triglochin sp. C Flora of Australia (P.G.Wilson 8811) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Mt Ella (M.E. Trudgen 12739) replace: Triodia sp. Mt Ella (M.E.Trudgen 12739) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Adolphus Island (K.F. Kenneally 11898) replace: Triumfetta sp. Adolphus Island (KF.Kenneally 11898) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Mt Bomford (M.D. Barrett MDB 1001) replace: Triumfetta sp. Mt Bomford (M.D.Barrett MDB 1001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Kununurra (A.N. Start ANS 1467) replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Galena (G.J. Keighery 14733) replace: Urodon sp. Galena (G.L.Keighery 14733) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Narkal (B.H. Smith 1440) replace: Urodon sp. Narkal (B.H.Smith 1440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia plumosa var. ananeotes x vassensis replace: Verticordia plumosa [Verticordia plumosa var. ananeotes x vassensis; WAH_2022_2] reason: Manual match to species, ignoring infraspecific information (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia serrata var. Udumung replace: Verticordia serrata var. Udumung (D.Hunter & B.Yarran 941006) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Verticordia staminosa subsp. cylindracea var. cylindracea replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Verticordia staminosa subsp. cylindracea var. erecta replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Verticordia xeurardyensis replace: Verticordia x eurardyensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. Hamersley Clay (A.A. Mitchell PRP 113) replace: Vigna sp. Hamersley Clay (A.A.Mitchell PRP 113) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. northern pubescent (A.A. Mitchell 3667) replace: Vigna sp. northern pubescent (A.A.Mitchell 3667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia sp. A Kimberley Flora (R.J. Cranfield 6527) replace: Vittadinia sp. A Kimberley Flora (R.J.Cranfield 6527) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia preissii de replace: Wahlenbergia preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia sp. Hamersley (A.S. Weston 8444) replace: Wedelia sp. Hamersley (A.S.Weston 8444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Cranbrook (A.R. Annels 3819) replace: Wurmbea sp. Cranbrook (A.R.Annels 3819) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Great Victoria Desert (G.J. Keighery 7501) replace: Wurmbea sp. Great Victoria Desert (G.J.Keighery 7501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosia sp. Dardanup (B.J. Keighery & N. Gibson 174) replace: Xanthosia sp. Dardanup (B.J.Keighery & N.Gibson 174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: xCyanthera glossodioides - replace: X Cyanthera glossodioides - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. West Kimberley (C.A. Gardner 9942) replace: Zornia sp. West Kimberley (C.A.Gardner 9942) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baumea preissii subsp. preissii - replace: Baumea preissii - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Boronia crenulata 'Shark Bay' - replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Subspecies -- find: Meeboldina decipiens subsp. decipiens - replace: Meeboldina decipiens MS - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: xCyanthera glossodioides + replace: X Cyanthera glossodioides + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/WAH_2023_1/metadata.yml b/data/WAH_2023_1/metadata.yml index 63966030e..fb763a94d 100644 --- a/data/WAH_2023_1/metadata.yml +++ b/data/WAH_2023_1/metadata.yml @@ -56,7 +56,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -459,1060 +459,1064 @@ taxonomic_updates: - find: Abutilon sp. Cape Range (A.S. George 1312) replace: Abutilon sp. Cape Range (A.S.George 1312) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Dioicum (A.A. Mitchell PRP 1618) replace: Abutilon sp. Dioicum (A.A.Mitchell PRP 1618) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Hamelin (A.M. Ashby 2196) replace: Abutilon sp. Hamelin (A.M.Ashby 2196) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F. Smith s.n. 10/9/61) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Pilbara (W.R. Barker 2025) replace: Abutilon sp. Pilbara (W.R.Barker 2025) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Quobba (H. Demarz 3858) replace: Abutilon sp. Quobba (H.Demarz 3858) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Warburton (A.S. George 8164) replace: Abutilon sp. Warburton (A.S.George 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia drummondii subsp. elegans Porongurup variant replace: Acacia drummondii subsp. elegans Porongurup variant (R.J.Cumming 938) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia eremophila var. Numerous-nerved variant replace: Acacia eremophila var. Numerous-nerved variant (A.S.George 11924) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. bracteolata long peduncle variant replace: Acacia lasiocarpa var. bracteolata Long Peduncle variant (G.J.Keighery 5026) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant replace: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant (E.A.Griffin 2039) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lateriticola var. Glabrous variant replace: Acacia lateriticola var. Glabrous variant (B.R.Maslin 6765) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia leioderma var. Fitzgerald River N.P. variant replace: Acacia leioderma var. Fitzgerald River N.P. variant (A.S.George 9922) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mutabilis subsp. Young River replace: Acacia mutabilis subsp. Young River (G.F.Craig 2052) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia pulchella var. reflexa acuminate bracteole variant replace: Acacia pulchella var. reflexa Acuminate bracteole variant (R.J.Cumming 882) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia sp. Barklys (J.L. Egan 124) replace: Acacia sp. Barklys (J.L.Egan 124) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Broome (B.R. Maslin 4918) replace: Acacia sp. Broome (B.R.Maslin 4918) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Bungalbin Hill (J.J. Alford 1119) replace: Acacia sp. Bungalbin Hill (J.J.Alford 1119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R.Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R. Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S.Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S. Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Carson River (M. McDonald MM1890) replace: Acacia sp. Carson River (M.McDonald MM1890) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cockburn Range (R. Pullen 10.763) replace: Acacia sp. Cockburn Range (R.Pullen 10.763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Edgar Range (S.D. Hopper 1763) replace: Acacia sp. Edgar Range (S.D.Hopper 1763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Esperance (M.A. Burgman 1833b) replace: Acacia sp. Esperance (M.A.Burgman 1833b) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. F Kimberley Flora (J.J. Alford 557) replace: Acacia sp. F Kimberley Flora (J.J.Alford 557) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Goodlands (B.R. Maslin 7761) replace: Acacia sp. Goodlands (B.R.Maslin 7761) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Jimblebar (S. van Leeuwen 1342) replace: Acacia sp. Jimblebar (S.van Leeuwen 1342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7571) replace: Acacia sp. Kalannie (B.R.Maslin 7571) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7706) replace: Acacia sp. Kalannie (B.R.Maslin 7706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North (B.R. Maslin 7702) replace: Acacia sp. Kalannie North (B.R.Maslin 7702) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North East (B.R. Maslin 7519) replace: Acacia sp. Kalannie North East (B.R.Maslin 7519) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kulin (S. Murray 504) replace: Acacia sp. Kulin (S.Murray 504) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kununurra (Lullfitz 6195) replace: Acacia sp. Kununurra (G.Lullfitz 6195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake King (R. Hnatiuk 760791) replace: Acacia sp. Lake King (R.Hnatiuk 760791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Little Sandy Desert (A.S. Mitchell 591) replace: Acacia sp. Little Sandy Desert (A.S.Mitchell 591) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Manmanning (B.R. Maslin 7711) replace: Acacia sp. Manmanning (B.R.Maslin 7711) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Marble Bar (J.G. & M.H. Simmons 3499) replace: Acacia sp. Marble Bar (J.G. & M.H.Simmons 3499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Minnie Creek (B.R. Maslin 5217) replace: Acacia sp. Minnie Creek (B.R.Maslin 5217) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Moorine Rock (B.R. Maslin 4474) replace: Acacia sp. Moorine Rock (B.R.Maslin 4474) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Augustus (S.D. Hopper 3181) replace: Acacia sp. Mt Augustus (S.D.Hopper 3181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Jackson (B. Ryan 176) replace: Acacia sp. Mt Jackson (B.Ryan 176) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Muggon Station (S. Patrick & D. Edinger SP 3235) replace: Acacia sp. Muggon Station (S.Patrick & D.Edinger SP3235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mullewa (B.R. Maslin 4269) replace: Acacia sp. Mullewa (B.R.Maslin 4269) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) - replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. New Norcia (E.A. Griffin 5917) replace: Acacia sp. New Norcia (E.A.Griffin 5917) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Norseman (B. Archer 1554) replace: Acacia sp. Norseman (B.Archer 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Nullagine (B.R. Maslin 4955) replace: Acacia sp. Nullagine (B.R.Maslin 4955) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P174 (J.M. Brown 228) replace: Acacia sp. P174 (J.M.Brown 228) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P176 (B.R. Maslin 5831) replace: Acacia sp. P176 (B.R.Maslin 5831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P19 (A.A. Mitchell 231) replace: Acacia sp. P19 (A.A.Mitchell 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P69 (W.E. Blackall 3754) replace: Acacia sp. P69 (W.E.Blackall 3754) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P94 (J.S. Beard 6178) replace: Acacia sp. P94 (J.S.Beard 6178) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Peak Hill (R. Gibson 0003) replace: Acacia sp. Peak Hill (R.Gibson 0003) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Petrudor Rocks (B.R. Maslin 7714) replace: Acacia sp. Petrudor Rocks (B.R.Maslin 7714) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe (R.S. Cowan & B.R. Maslin RSC A-760) replace: Acacia sp. Ravensthorpe (R.S.Cowan & B.R.Maslin RSC A-760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe Range (B.R. Maslin 5463) replace: Acacia sp. Ravensthorpe Range (B.R.Maslin 5463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Riddell Beach (T. Willing 71) replace: Acacia sp. Riddell Beach (T.Willing 71) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Rudall River (B.R. Maslin 2237) replace: Acacia sp. Rudall River (B.R.Maslin 2237) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Shark Bay (B.R. Maslin 3682) replace: Acacia sp. Shark Bay (B.R.Maslin 3682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. small seed (B.R. Maslin 7830) - replace: Acacia sp. Small seed (B.R.Maslin 7830) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Trent River (K.F. Kenneally 11701) - replace: Acacia sp. Trent River (K.F.Kenneally 11701) + replace: Acacia sp. Trent River (K.F.Kenneally 11701) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Weld Range (A. Markey & S. Dillon 2994) replace: Acacia sp. Weld Range (A.Markey & S.Dillon 2994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wiluna (B.R. Maslin 7090) replace: Acacia sp. Wiluna (B.R.Maslin 7090) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Windy Corner (P.K. Latz 17865) replace: Acacia sp. Windy Corner (P.K.Latz 17865) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wren Creek Crossing (K.F. Kenneally 11853) replace: Acacia sp. Wren Creek Crossing (K.F.Kenneally 11853) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) + replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Acacia sp. small seed (B.R. Maslin 7830) + replace: Acacia sp. Small seed (B.R.Maslin 7830) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. A Kimberley Flora (C.R. Dunlop 5303) replace: Actinoschoenus sp. A Kimberley Flora (C.R.Dunlop 5303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. B Kimberley Flora (G.J. Keighery 2649) replace: Actinoschoenus sp. B Kimberley Flora (G.J.Keighery 2649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. C Kimberley Flora (P.G. Wilson s.n. 12/5/72) replace: Actinoschoenus sp. C Kimberley Flora (P.G.Wilson s.n. 12/5/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. D Kimberley Flora (K.F. Kenneally 4789) replace: Actinoschoenus sp. D Kimberley Flora (K.F.Kenneally 4789) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. E Kimberley Flora (C.R. Dunlop 5309) replace: Actinoschoenus sp. E Kimberley Flora (C.R.Dunlop 5309) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Comet Vale (A.V. Milewski AVM 1093) replace: Actinotus sp. Comet Vale (A.V.Milewski AVM1093) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Walpole (J.R. Wheeler 3786) replace: Actinotus sp. Walpole (J.R.Wheeler 3786) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angulata replace: Alyogyne angulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angustiloba replace: Alyogyne angustiloba MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne coronopifolia replace: Alyogyne coronopifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne pyrrhophila replace: Alyogyne pyrrhophila MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Geraldton (R. Davis 3487) replace: Alyogyne sp. Geraldton (R.Davis 3487) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Great Victoria Desert (D.J. Edinger 6212) replace: Alyogyne sp. Great Victoria Desert (D.J.Edinger 6212) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hutt River (B.J. Lepschi & T.R. Lally 2310) replace: Alyogyne sp. Hutt River (B.J.Lepschi & T.R.Lally 2310) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S. Durell GD 127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S.Durrell GD127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Rockingham (G.J. Keighery 14463) replace: Alyogyne sp. Rockingham (G.J.Keighery 14463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne wrayae replace: Alyogyne wrayae MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus sp. A Kimberley Flora (C.A. Gardner s.n. PERTH 00326518) replace: Amaranthus sp. A Kimberley Flora (C.A.Gardner s.n. PERTH 00326518) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. Fortescue (M.E. Trudgen 5358) replace: Amyema sp. Fortescue (M.E.Trudgen 5358) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anacampseros sp. Eremaean (F. Hort, J. Hort & J. Shanks 3248) replace: Anacampseros sp. Eremaean (F.Hort, J.Hort & J.Shanks 3248) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia caerulea subsp. caerulea replace: Andersonia caerulea var. caerulea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Andersonia fallax replace: Andersonia fallax MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia jamesii replace: Andersonia jamesii MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Frankland (W. Jackson BJ8) replace: Andersonia sp. Frankland (W.Jackson BJ8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Lower King (N. Hoyle 1500) replace: Andersonia sp. Lower King (N.Hoyle 1500) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Mitchell River (B.G. Hammersley 925) replace: Andersonia sp. Mitchell River (B.G.Hammersley 925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthocercis sp. Shark Bay (T.E.H. Aplin 3335) replace: Anthocercis sp. Shark Bay (T.E.H.Aplin 3335) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Darling Range (F. Hort & B. Hort 2431) replace: Anthotium sp. Darling Range (F.Hort & B.Hort 2431) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Peaceful Bay (J.R. Wheeler 3772 & S.J. Patrick) replace: Anthotium sp. Peaceful Bay (J.R.Wheeler 3772 & S.J.Patrick) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Cunderdin (B.J. Lepschi et al. 3587) replace: Aotus sp. Cunderdin (B.J.Lepschi et al. 3587) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Dundas (M.A. Burgman 2835) replace: Aotus sp. Dundas (M.A.Burgman 2835) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. big bracteoles (A.R. Annels 995) - replace: Astartea sp. big bracteoles (A.R.Annels 995) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Bungalbin Hill (K.R. Newbey 8989) replace: Astartea sp. Bungalbin Hill (K.R.Newbey 8989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Esperance (A. Fairall 2431) replace: Astartea sp. Esperance (A.Fairall 2431) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Fitzgerald (K.R. Newbey 10844) replace: Astartea sp. Fitzgerald (K.R.Newbey 10844) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Gingalup (N. Gibson & M. Lyons 119) replace: Astartea sp. Gingalup (N.Gibson & M.Lyons 119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Hopetoun area (A.S. George 10594) replace: Astartea sp. Hopetoun area (A.S.George 10594) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jerdacuttup (A. Strid 21898) replace: Astartea sp. Jerdacuttup (A.Strid 21898) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jyndabinbin Rocks (K.R. Newbey 7689) replace: Astartea sp. Jyndabinbin Rocks (K.R.Newbey 7689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. long stalks (D. Foreman 1490) - replace: Astartea sp. long stalks (D.Foreman 1490) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Dimer (C. McChesney TRL4/72) replace: Astartea sp. Mt Dimer (C.McChesney TRL4/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Johnston (A.R. Annels 5645) replace: Astartea sp. Mt Johnston (A.R.Annels 5645) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Red Hill (K.R. Newbey 8462) replace: Astartea sp. Red Hill (K.R.Newbey 8462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Scott River (D. Backshall 88233) replace: Astartea sp. Scott River (D.Backshall 88233) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astartea sp. big bracteoles (A.R. Annels 995) + replace: Astartea sp. big bracteoles (A.R.Annels 995) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Astartea sp. long stalks (D. Foreman 1490) + replace: Astartea sp. long stalks (D.Foreman 1490) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Asterolasia sp. Kalgan River (S. Barrett 1522) replace: Asterolasia sp. Kalgan River (S.Barrett 1522) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Cataby (E.A. Griffin 1022) replace: Astroloma sp. Cataby (E.A.Griffin 1022) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Grass Patch (A.J.G. Wilson 110) replace: Astroloma sp. Grass Patch (A.J.G.Wilson 110) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Nannup (R.D. Royce 3978) replace: Astroloma sp. Nannup (R.D.Royce 3978) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astroloma sp. sessile leaf (J.L. Robson 657) - replace: Astroloma sp. sessile leaf (J.L.Robson 657) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Tutanning (A.S. George 7779) replace: Astroloma sp. Tutanning (A.S.George 7779) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astroloma sp. sessile leaf (J.L. Robson 657) + replace: Astroloma sp. sessile leaf (J.L.Robson 657) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Atriplex sp. De Grey (A.A. Mitchell PRP1940) replace: Atriplex sp. De Grey (A.A.Mitchell PRP1940) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos erubescens replace: Austrodolichos erubescens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Axonopus affinis + replace: Axonopus fissifolius + reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Baeckea sp. Baladjie (P.J. Spencer 24) replace: Baeckea sp. Baladjie (P.J.Spencer 24) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bencubbin-Koorda (M.E. Trudgen 5421) replace: Baeckea sp. Bencubbin-Koorda (M.E.Trudgen 5421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Beringbooding (A.R. Main 11/9/1957) replace: Baeckea sp. Beringbooding (A.R.Main 11/9/1957) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Billeranga Hills (M.E. Trudgen 2206) replace: Baeckea sp. Billeranga Hills (M.E.Trudgen 2206) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bulla Bulling (D.J.E. Whibley 4648) replace: Baeckea sp. Bulla Bulling (D.J.E.Whibley 4648) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bungalbin Hill (B.J. Lepschi & L.A. Craven 4586) replace: Baeckea sp. Bungalbin Hill (B.J.Lepschi & L.A.Craven 4586) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunjil (B.R. Maslin 5067) replace: Baeckea sp. Bunjil (B.R.Maslin 5067) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunney Road (S. Patrick 4059) replace: Baeckea sp. Bunney Road (S.Patrick 4059) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Calingiri (F. Hort 1710) replace: Baeckea sp. Calingiri (F.Hort 1710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Chittering (R.J. Cranfield 1983) replace: Baeckea sp. Chittering (R.J.Cranfield 1983) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Darling Range (R.J. Cranfield 1673) replace: Baeckea sp. Darling Range (R.J.Cranfield 1673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Die Hardy Range (E. Mattiske J91) replace: Baeckea sp. Die Hardy Range (E.Mattiske J91) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. East Yuna (R. Spjut & C. Edson 7077) replace: Baeckea sp. East Yuna (R.Spjut & C.Edson 7077) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Elsewhere Road (M.E. Trudgen 5420) replace: Baeckea sp. Elsewhere Road (M.E.Trudgen 5420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Eujinyn (J. Buegge D 99) replace: Baeckea sp. Eujinyn (J.Buegge D99) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Exclamation Lake (M.E. Trudgen 1524) replace: Baeckea sp. Exclamation Lake (M.E.Trudgen 1524) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Forrestania (K.R. Newbey 1105) replace: Baeckea sp. Forrestania (K.R.Newbey 1105) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Gibson (K.R. Newbey 11084) replace: Baeckea sp. Gibson (K.R.Newbey 11084) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Great Victoria Desert (A.S. Weston 14813) replace: Baeckea sp. Great Victoria Desert (A.S.Weston 14813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hatter Hill (K.R. Newbey 3284) replace: Baeckea sp. Hatter Hill (K.R.Newbey 3284) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena & Aurora Range (G.J.Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena and Aurora Range (G.J. Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hyden (J.M. Brown 141) replace: Baeckea sp. Hyden (J.M.Brown 141) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Jaurdi Station (L.W. Sage & F. Hort 2229) replace: Baeckea sp. Jaurdi Station (L.W.Sage & F.Hort 2229) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Koorda (W.E. Blackall 3371) replace: Baeckea sp. Koorda (W.E.Blackall 3371) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Lake Cronin (K.R. Newbey 9191) replace: Baeckea sp. Lake Cronin (K.R.Newbey 9191) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. London Bridge (M.E. Trudgen 5393) replace: Baeckea sp. London Bridge (M.E.Trudgen 5393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Melita Station (H. Pringle 2738) replace: Baeckea sp. Melita Station (H.Pringle 2738) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Merredin (K.R. Newbey 2506) replace: Baeckea sp. Merredin (K.R.Newbey 2506) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mingenew (M.E. Trudgen 12029) replace: Baeckea sp. Mingenew (M.E.Trudgen 12029) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Moora (R. Bone 1993/1) replace: Baeckea sp. Moora (R.Bone 1993/1) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Morawa (M.A. Langley MAL4177) replace: Baeckea sp. Morawa (M.A.Langley MAL4177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mount Barloweerie (J.Z. Weber 5079) replace: Baeckea sp. Mount Barloweerie (J.Z.Weber 5079) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mt Glasse (P.G. Wilson 5717) replace: Baeckea sp. Mt Glasse (P.G.Wilson 5717) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Muntadgin (E.T. Bailey 231) replace: Baeckea sp. Muntadgin (E.T.Bailey 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Murchison River (M.E. Trudgen 12009) replace: Baeckea sp. Murchison River (M.E.Trudgen 12009) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nanga (A.S. George 11346) replace: Baeckea sp. Nanga (A.S.George 11346) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narembeen (G.J. Keighery & N. Gibson 3010) replace: Baeckea sp. Narembeen (G.J.Keighery & N.Gibson 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narrogin (R. Hnatiuk 780011) replace: Baeckea sp. Narrogin (R.Hnatiuk 780011) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nolba (M.E. Trudgen MET21632) replace: Baeckea sp. Nolba (M.E.Trudgen MET21632) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. North Ironcap (R.J. Cranfield 10580) replace: Baeckea sp. North Ironcap (R.J.Cranfield 10580) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Parker Range (M. Hislop & F. Hort MH 2968) replace: Baeckea sp. Parker Range (M.Hislop & F.Hort MH 2968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Paynes Find (S. Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Payne's Find (S.Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Payne's Find (S.Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Paynes Find (S. Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perenjori (J.W. Green 1516) replace: Baeckea sp. Perenjori (J.W.Green 1516) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perth Region (R.J. Cranfield 444) replace: Baeckea sp. Perth Region (R.J.Cranfield 444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Pigeon Rocks (D. Grace DJP 281) replace: Baeckea sp. Pigeon Rocks (D.Grace DJP 281) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A. Gardner s.n. 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A.Gardner s.n., 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sheoaks Rocks (M.E. Trudgen MET5452) replace: Baeckea sp. Sheoaks Rocks (M.E.Trudgen MET5452) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Stockton Road (M.E. Trudgen MET22077 & B. Rye) replace: Baeckea sp. Stockton Road (M.E.Trudgen MET22077 & B.Rye) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Tammin (R. Coveny 8319 & B. Habberley) replace: Baeckea sp. Tammin (R.Coveny 8319 & B.Habberley) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Three Springs (M.E. Trudgen 5368) replace: Baeckea sp. Three Springs (M.E.Trudgen 5368) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Walkaway (A.S. George 11249) replace: Baeckea sp. Walkaway (A.S.George 11249) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Western Australia (J. Drummond s.n.) replace: Baeckea sp. Western Australia (J.Drummond s.n.) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Whelarra (A.C. Burns 7) replace: Baeckea sp. Whelarra (A.C.Burns 7) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wialki (G.M. Storr s.n. 4/10/1958) replace: Baeckea sp. Wiakli (G.M.Storr s.n. 4/10/1958) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wubin (M.E. Trudgen 5404) replace: Baeckea sp. Wubin (M.E.Trudgen 5404) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yacke Yackine Dam (K.R. Newbey 9195) replace: Baeckea sp. Yacke Yackine Dam (K.R.Newbey 9195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Youndegin Hill (A.S. George 15772) replace: Baeckea sp. Youndegin Hill (A.S.George 15772) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yuna (M.E. Trudgen 2224) replace: Baeckea sp. Yuna (M.E.Trudgen 2224) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia dallanneyi subsp. dallanneyi var. dallanneyi replace: Banksia dallanneyi subsp. dallanneyi reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia dallanneyi subsp. dallanneyi var. mellicula replace: Banksia dallanneyi var. mellicula reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia nivea subsp. Morangup replace: Banksia nivea subsp. Morangup (M.Pieroni 9/42) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia sp. Boyup Brook (L.W. Sage LWS 2366) replace: Banksia sp. Boyup Brook (L.W.Sage LWS 2366) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea preissii subsp. laxa replace: Baumea preissii subsp. laxa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Beaufortia sp. column (J.S. Beard 8119) replace: Beaufortia sp. Column (J.S.Beard 8119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. A Ravensthorpe (A.S. George 9474) replace: Beyeria sp. A Ravensthorpe (A.S.George 9474) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Bandalup Hill (G. Cockerton 7553) replace: Beyeria sp. Bandalup Hill (G.Cockerton 7553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Jackson Range (R. Cranfield & P. Spencer 7751) replace: Beyeria sp. Jackson Range (R.Cranfield & P.Spencer 7751) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Murchison (B. Jeanes s.n. 7/7/2005) replace: Beyeria sp. Murchison (B.Jeanes s.n. 7/7/2005) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Boronia crenulata subsp. crenulata var. angustifolia - replace: Boronia crenulata var. angustifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Boronia crenulata subsp. Shark Bay replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Boronia crenulata subsp. crenulata var. angustifolia + replace: Boronia crenulata var. angustifolia + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: varietas - find: Boronia sp. Leeuwin (J. Scott 235) replace: Boronia sp. Leeuwin (J.Scott 235) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp. Location 4264 (R. Turner s.n.) replace: Boronia sp. Location 4264 (R.Turner s.n., 23 Sept. 1999) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borya sp. Wheatbelt (A.S. George 16470) replace: Borya sp. Wheatbelt (A.S.George 16470) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Bremer (K. Newbey 2980) replace: Bossiaea sp. Bremer (K.Newbey 2980) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Frankland (E.M. Sandiford EMS 896) replace: Bossiaea sp. Frankland (E.M.Sandiford EMS 896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Jackson Range (G. Cockerton & S. McNee LCS 13614) replace: Bossiaea sp. Jackson Range (G.Cockerton & S.McNee LCS 13614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Waroona (B.J. Keighery & N. Gibson 229) replace: Bossiaea sp. Waroona (B.J.Keighery & N.Gibson 229) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Long hairs (D.E. Symon 2440) replace: Brunonia sp. Long Hairs (D.E.Symon 2440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunoniella acaulis var. acaulis replace: Brunoniella acaulis subsp. acaulis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caesia sp. Wongan (K.F. Kenneally 8820) replace: Caesia sp. Wongan (K.F.Kenneally 8820) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Muddarning Hill (S.D. Hopper 4013) replace: Caladenia sp. Muddarning Hill (S.D.Hopper 4013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Wyalkatchem (G.B. Brockman GBB 661) replace: Caladenia sp. Wyalkatchem (G.B.Brockman GBB 661) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xaestantha replace: Caladenia x aestantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcala replace: Caladenia x cala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcoactescens replace: Caladenia x coactescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xeludens replace: Caladenia x eludens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xenigma replace: Caladenia x enigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xericksoniae replace: Caladenia x ericksoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xerminea replace: Caladenia x erminea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexoleta replace: Caladenia x exoleta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexserta replace: Caladenia x exserta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xhypata replace: Caladenia x hypata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xidiastes replace: Caladenia x idiastes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xlavandulacea replace: Caladenia x lavandulacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xornata replace: Caladenia x ornata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xresupina replace: Caladenia x resupina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xspectabilis replace: Caladenia x spectabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xsuffusa replace: Caladenia x suffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtriangularis replace: Caladenia x triangularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtryphera replace: Caladenia x tryphera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Bungalbin (G.J. Keighery & N. Gibson 1656) replace: Calandrinia sp. Bungalbin (G.J.Keighery & N.Gibson 1656) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Coolcalalaya (G.J. Keighery & N. Gibson 698) replace: Calandrinia sp. Coolcalalaya (G.J.Keighery & N.Gibson 698) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick (G.J. Keighery 10905) replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Needilup (K.R. Newbey 4892) replace: Calandrinia sp. Needilup (K.R.Newbey 4892) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Ongerup (K.R. Newbey 11834) replace: Calandrinia sp. Ongerup (K.R.Newbey 11834) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Piawaning (A.C. Beauglehole 12257) replace: Calandrinia sp. Piawaning (A.C.Beauglehole 12257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. The Pink Hills (F. Obbens FO 19/06) replace: Calandrinia sp. The Pink Hills (F.Obbens FO 19/06) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. Wheatbelt replace: Calectasia grandiflora (Wheatbelt variant) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia sp. Pinjar (C. Tauss 557) replace: Calectasia sp. Pinjar (C.Tauss 557) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistachys sp. south-coast variant (M. Carter 180) replace: Callistachys sp. south-coast variant (M.Carter 180) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Pilbara-Desert (M.E. Trudgen 11454) replace: Calocephalus sp. Pilbara-Desert (M.E.Trudgen 11454) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Wittenoom (A.S. George 1082) replace: Calocephalus sp. Wittenoom (A.S.George 1082) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Hopetoun (H. Taylor s.n.) replace: Calochilus sp. Hopetoun (H.Taylor s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. South-west swamps (B.G. Hammersley 1010) replace: Calochilus sp. South-west swamps (B.G.Hammersley 1010) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Wandoo Beard Orchid (D.M. Rose 344) replace: Calochilus sp. Wandoo Beard Orchid (D.M.Rose 344) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Mt Lindesay (B.G. Hammersley 439) replace: Calothamnus sp. Mt Lindesay (B.G.Hammersley 439) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Scott River (R.D. Royce 84) replace: Calothamnus sp. Scott River (R.D.Royce 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Whicher (B.J. Keighery & N. Gibson 230) replace: Calothamnus sp. Whicher (B.J.Keighery & N.Gibson 230) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. brevifolia replace: Calytrix acutifolia subsp. brevifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calytrix sp. Dragon Rocks (K. Kershaw & L. Kerrigan KK 2180) replace: Calytrix sp. Dragon Rocks (K.Kershaw & L.Kerrigan KK 2180) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Eneabba (B.J. Lepschi & T.R. Lally BJL3617) replace: Calytrix sp. Eneabba (B.J.Lepschi & T.R.Lally BJL3617) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Esperance (M.A. Burgman 4268A) replace: Calytrix sp. Esperance (M.A.Burgman 4268A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Jingaring (F. Obbens, R. Davis & L.W. Sage LWS1332) replace: Calytrix sp. Jingaring (F.Obbens, R.Davis & L.W.Sage LWS1332) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Scarp (H. Bowler 270) replace: Calytrix sp. Scarp (H.Bowler 270) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Tutunup (G.J. Keighery & N. Gibson 2953) replace: Calytrix sp. Tutunup (G.J.Keighery & N.Gibson 2953) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Wheatbelt (R. Davis 4544) replace: Calytrix sp. Wheatbelt (R.Davis 4544) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xgeneralis replace: Canna x generalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xorchiodes replace: Canna x orchiodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine sp. Jandakot (P. Luff s.n. 4/7/1969) replace: Cardamine sp. Jandakot (P.Luff s.n. 4/7/1969) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpobrotus sp. Thevenard Island (M. White 050) replace: Carpobrotus sp. Thevenard Island (M.White 050) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. A Kimberley Flora (S.J. Forbes 2163) replace: Cartonema sp. A Kimberley Flora (S.J.Forbes 2163) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. B Kimberley Flora (D.J. Edinger 336) replace: Cartonema sp. B Kimberley Flora (D.J.Edinger 336) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caulerpa scalpelliformis replace: Caulerpa sp. [Caulerpa scalpelliformis; WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -1521,19 +1525,19 @@ taxonomic_updates: - find: Caustis sp. Boyanup (G.S. McCutcheon 1706) replace: Caustis sp. Boyanup (G.S.McCutcheon 1706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. thryptomenioides replace: Chamelaucium pauciflorum subsp. thryptomenoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chamelaucium sp. Yalgoo (Y. Chadwick 1816) replace: Chamelaucium sp. Yalgoo (Y.Chadwick 1816) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon sp. Zuytdorp (G.J. Keighery & N. Gibson 906) replace: Chrysopogon sp. Zuytdorp (G.J.Keighery & N.Gibson 906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codium duthieae replace: Codium sp. [Codium duthieae; WAH_2022_1] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1542,1275 +1546,1283 @@ taxonomic_updates: - find: Comesperma sp. A Kimberley Flora (K.F. Kenneally 9242) replace: Comesperma sp. A Kimberley Flora (K.F.Kenneally 9242) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia adenothalia replace: Commersonia adenothalia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia bivillosa replace: Commersonia bivillosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Bindoon (C. Wilkins & F. & J. Hort CW 2155) replace: Commersonia sp. Bindoon (C.Wilkins & F. & J.Hort CW 2155) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Mt Groper (R. Cranfield & D. Kabay 9157) replace: Commersonia sp. Mount Groper (R.Cranfield & D.Kabay 9157) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis candicans var. xleptophylla replace: Conostylis candicans var. x leptophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Conostylis seorsiflora subsp. Nyabing + replace: Conostylis seorsiflora subsp. Nyabing (A.Coates s.n. 2/10/1998) + reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Corchorus sp. Fitzroy Crossing (A.J. Ewart s.n. PERTH 01526790) replace: Corchorus sp. Fitzroy Crossing (A.J.Ewart s.n. PERTH 01526790) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Hamersley Range (S. van Leeuwen 3586) replace: Corchorus sp. Hamersley Range (S.van Leeuwen 3586) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Yarrie (J. Bull & D. Roberts CAL 01.05) - replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) + replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia candida subsp. xlautifolia replace: Corymbia candida subsp. x lautifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia xopacula replace: Corymbia x opacula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia xpedimontana replace: Corymbia x pedimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia arenicola replace: Craspedia arenicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia argillicola replace: Craspedia argillicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria sp. Chichester Tablelands (A.A. Mitchell PRP226) replace: Crotalaria sp. Chichester Tablelands (A.A.Mitchell PRP226) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis sp. Bunbury (G. Brayshaw s.n. 26/2/91) replace: Cucumis sp. Bunbury (G.Brayshaw s.n. 26/2/91) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Dowak (J.M. Fox 86/271) replace: Cyathostemon sp. Dowak (J.M.Fox 86/271) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Lake King (M.E. & M.E. Trudgen 1462) replace: Cyathostemon sp. Lake King (M.E. & M.E.Trudgen 1462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Salmon Gums (B. Archer 769) replace: Cyathostemon sp. Salmon Gums (B.Archer 769) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum sp. Hamersley (M. Trudgen 2302) replace: Cynanchum sp. Hamersley (M.Trudgen 2302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera angulata subsp. Peak Charles replace: Dampiera angulata subsp. Peak Charles (K.R.Newbey 5402) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera diversifolia de replace: Dampiera diversifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera eriocephala de replace: Dampiera eriocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de replace: Dampiera haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de subsp. haematotricha replace: Dampiera haematotricha subsp. haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera lindleyi de replace: Dampiera lindleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Central Wheatbelt (L.W. Sage, F. Hort, C.A. Hollister LWS 2321) replace: Dampiera sp. Central Wheatbelt (L.W.Sage, F.Hort, C.A.Hollister LWS2321) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Jurien (G. Lullfitz s.n. 10/7/1986) replace: Dampiera sp. Jurien (G.Lullfitz s.n. 10/7/1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Wongan Hills (R.D. Royce 6637) replace: Dampiera sp. Wongan Hills (R.D.Royce 6637) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera trigona de replace: Dampiera trigona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Carnamah (J. Coleby-Williams 148) replace: Darwinia sp. Carnamah (J.Coleby-Williams 148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Chiddarcooping (S.D. Hopper 6944) replace: Darwinia sp. Chiddarcooping (S.D.Hopper 6944) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Dryandra (G.J. Keighery 9295) replace: Darwinia sp. Dryandra (G.J.Keighery 9295) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Gibson (R.D. Royce 3569) replace: Darwinia sp. Gibson (R.D.Royce 3569) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Morawa (C.A. Gardner 2662) replace: Darwinia sp. Morawa (C.A.Gardner 2662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Baring (K.R. Newbey 9775) replace: Darwinia sp. Mt Baring (K.R.Newbey 9775) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Burdett (N.G. Marchant 80/42) replace: Darwinia sp. Mt Burdett (N.G.Marchant 80/42) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ney (M.A. Burgman & S. McNee 1274) replace: Darwinia sp. Mt Ney (M.A.Burgman & S.McNee 1274) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ragged (S. Barrett 663) replace: Darwinia sp. Mt Ragged (S.Barrett 663) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Success (G.J. Keighery 2299) replace: Darwinia sp. Mt Success (G.J.Keighery 2299) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Peak Charles (A.S. George 10627) replace: Darwinia sp. Peak Charles (A.S.George 10627) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Ravensthorpe (G.J. Keighery 8030) replace: Darwinia sp. Ravensthorpe (G.J.Keighery 8030) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Stirling Range (G.J. Keighery 5732) replace: Darwinia sp. (Stirling Range) G.J.Keighery 5732 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Thumb Peak (K.R. Newbey 4847) replace: Darwinia sp. Thumb Peak (K.R.Newbey 4847) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Westdale (F. Hort 864) replace: Darwinia sp. Westdale (F.Hort 864) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson (G.J. Keighery 12717) replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Wyalgima Hill (L.W. Sage, J.P. Pigott & E.B. Pigott LWS1549) replace: Darwinia sp. Wyalgima Hill (L.W.Sage, J.P.Pigott & E.B.Pigott LWS1549) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia thymoides subsp. bella replace: Darwinia thymoides subsp. bella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Darwinia thymoides subsp. thymoides replace: Darwinia thymoides var. thymoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. A Kimberley Flora (K.F. Kenneally 8686) replace: Dicarpidium sp. A Kimberley Flora (K.F.Kenneally 8686) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. B Kimberley Flora (G.J. Keighery 10138) replace: Dicarpidium sp. B Kimberley Flora (G.J.Keighery 10138) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Mt Leake (T. Willing 469) replace: Dicarpidium sp. Mt Leake (T.Willing 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Cue (A.A. Mitchell 764) replace: Dicrastylis sp. Cue (A.A.Mitchell 764) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Denham (M. Lewis 42/92) replace: Dicrastylis sp. Denham (M.Lewis 42/92) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Peron Peninsula (M.E. Trudgen 7373) replace: Dicrastylis sp. Peron Peninsula (M.E.Trudgen 7373) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria sp. Carson River (A.A. Mitchell 4387) replace: Digitaria sp. Carson River (A.A.Mitchell 4387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Capel (P.A. Jurjevich 1771) replace: Dillwynia sp. Capel (P.A.Jurjevich 1771) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coolgardie (V.E. Sands 637.3.1) replace: Dillwynia sp. Coolgardie (V.E.Sands 637.3.1) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coujinup Hill (M.A. Burgman 1560) replace: Dillwynia sp. Coujinup Hill (M.A.Burgman 1560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Northern Sandplains (M. Hislop 3278) replace: Dillwynia sp. Northern Sandplains (M.Hislop 3278) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Arrowsmith (K.W. Dixon 924) replace: Diuris sp. Arrowsmith (K.W.Dixon 924) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Eneabba (A.H. Burbidge 3941) replace: Diuris sp. Eneabba (A.H.Burbidge 3941) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xbadgerupii replace: Drosera x badgerupii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xsidjamesii replace: Drosera x sidjamesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita sp. Trayning (A.M. George 97) replace: Drummondita sp. Trayning (A.M.George 97) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinochloa crusgalli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. A Kimberley Flora (W.V. Fitzgerald 1038) replace: Eleocharis sp. A Kimberley Flora (W.V.Fitzgerald 1038) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. B Kimberley Flora (K.F. Kenneally 8727) replace: Eleocharis sp. B Kimberley Flora (K.F.Kenneally 8272) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elythranthera xintermedia replace: Elythranthera x intermedia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enekbatus roseus replace: Enekbatus roseus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. Mt Robinson (S. van Leeuwen 4109) replace: Eragrostis sp. Mt Robinson (S.van Leeuwen 4109) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea violacea var. violacea replace: Eremaea violacea subsp. violacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea xcodonocarpa replace: Eremaea x codonocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea xphoenicea replace: Eremaea x phoenicea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Eremophila sp. long pedicels (G. Cockerton 1975) - replace: Eremophila sp. long pedicels (G.Cockerton 1975) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Jackson (G.J. Keighery 4372) replace: Eremophila sp. Mt Jackson (G.J.Keighery 4372) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremophila sp. long pedicels (G. Cockerton 1975) + replace: Eremophila sp. long pedicels (G.Cockerton 1975) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Eriachne armitii replace: Eriachne armittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. C Kimberley Flora (G.J. Keighery 4610) replace: Eriocaulon sp. C Kimberley Flora (G.J.Keighery 4610) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. E Kimberley Flora (A.S. George 12635) replace: Eriocaulon sp. E Kimberley Flora (A.S.George 12635) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. G Kimberley Flora (K.F. Kenneally 11374E) replace: Eriocaulon sp. G Kimberley Flora (K.F.Kenneally 11374E) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium ferox replace: Eryngium ferox MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. minus replace: Eryngium pinnatifidum subsp. minus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium pinnatifidum subsp. umbraphilum replace: Eryngium pinnatifidum subsp. umbraphilum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium sp. Lake Muir (E. Wittwer 2293) replace: Eryngium sp. Lake Muir (E.Wittwer 2293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina xsykesii replace: Erythrina x sykesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus aspersa x Eucalyptus falcata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balanopelex replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus buprestium x Eucalyptus erectifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x ligulata replace: Eucalyptus buprestium x Eucalyptus ligulata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus buprestium x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus falcata subsp. falcata replace: Eucalyptus falcata var. falcata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus loxophleba x Eucalyptus wandoo reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus macrocarpa x pyriformis replace: Eucalyptus macrocarpa x Eucalyptus pyriformis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x megacarpa replace: Eucalyptus marginata x Eucalyptus megacarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x pachyloma replace: Eucalyptus marginata x Eucalyptus pachyloma reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus oldfieldii subsp. Millar Range replace: Eucalyptus oldfieldii subsp. Millar Range (M.French 303) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus preissiana x staeri replace: Eucalyptus preissiana x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus rhodantha var. xpetiolaris replace: Eucalyptus rhodantha var. x petiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sargentii subsp. onesia replace: Eucalyptus sargentii subsp. onesis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sp. Esperance (M.E. French 1579) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Eyre (K. Hill & L.A.S. Johnson KH 2170) replace: Eucalyptus sp. Eyre (K.Hill & L.A.S. Johnson KH 2170) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fitzgerald River (M.I.H. Brooker 10923) replace: Eucalyptus sp. Fitzgerald River (M.I.H.Brooker 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range (D. Nicolle 2157) replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. H Kimberley Flora (S.J. Forbes 2560) replace: Eucalyptus sp. H Kimberley Flora (S.G.Forbes 2560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Marvel Loch (D. Nicolle & M. French DN 4794) replace: Eucalyptus sp. Marvel Loch (D.Nicolle & M.French DN 4794) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Ravensthorpe (A.S. George 616) Southern Red Mallee replace: Eucalyptus sp. Ravensthorpe (A.S.George 616) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Truslove (M.I.H. Brooker 7499) replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L. Johnson 9127 & B. Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbalanites replace: Eucalyptus x balanites reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbennettiae replace: Eucalyptus x bennettiae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbrachyphylla replace: Eucalyptus x brachyphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xcarnabyi replace: Eucalyptus x carnabyi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xchrysantha replace: Eucalyptus x chrysantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerectifolia replace: Eucalyptus erectifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerythrandra replace: Eucalyptus x erythrandra reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ximpensa replace: Eucalyptus x impensa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xkalganensis replace: Eucalyptus x kalganensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xlateritica replace: Eucalyptus x lateritica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmissilis replace: Eucalyptus x missilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmundijongensis replace: Eucalyptus x mundijongensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xphylacis replace: Eucalyptus x phylacis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xstoataptera replace: Eucalyptus x stoataptera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xtetragona replace: Eucalyptus x tetragona reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii subsp. drummondii replace: Euphorbia drummondii var. drummondii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euphorbia sp. B Kimberley Flora (B.J. Carter 629) replace: Euphorbia sp. B Kimberley Flora (B.J.Carter 629) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. sparsifolia replace: Eutaxia epacridoides subsp. sparsifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. hirsuta replace: Eutaxia neurocalyx subsp. hirsuta MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. leptophylla replace: Eutaxia neurocalyx subsp. leptophylla MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. major replace: Eutaxia neurocalyx subsp. major MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia sp. Jasper Hill (R.J. Cranfield 8607) replace: Eutaxia sp. Jasper Hill (R.J.Cranfield 8607) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia sp. North Ironcap (P. Armstrong PA 06/898) replace: Eutaxia sp. North Ironcap (P.Armstrong et al. 06/898) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. A Kimberley Flora (A.S. George 13584) replace: Fimbristylis sp. A Kimberley Flora (A.S.George 13584) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. B Kimberley Flora (K.A. Menkhorst 767) replace: Fimbristylis sp. B Kimberley Flora (K.A.Menkhorst 767) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. C Kimberley Flora (T.G. Hartley 14511) replace: Fimbristylis sp. C Kimberley Flora (T.G.Hartley 14511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. D Kimberley Flora (A.C. Beauglehole 52448) replace: Fimbristylis sp. D Kimberley Flora (A.C.Beauglehole 52448) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. E Kimberley Flora (C.R. Dunlop 5403) replace: Fimbristylis sp. E Kimberley Flora (C.R.Dunlop 5403) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. F Kimberley Flora (A.S. George 13789) replace: Fimbristylis sp. F Kimberley Flora (A.S.George 13789) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. G Kimberley Flora (A.C. Beauglehole 51810) replace: Fimbristylis sp. G Kimberley Flora (A.C.Beauglehole 51810) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. I Kimberley Flora (R.J. Hnatiuk 112) replace: Fimbristylis sp. I Kimberley Flora (R.J.Hnatiuk 112) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. K Kimberley Flora (E. Langfield 40) replace: Fimbristylis sp. K Kimberley Flora (E.Langfield 40) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. L Kimberley Flora (K.F. Kenneally 11167) replace: Fimbristylis sp. L Kimberley Flora (K.F.Kenneally 11167) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Shay Gap (K.R. Newbey 10293) replace: Fimbristylis sp. Shay Gap (K.R.Newby 10293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Gahnia sp. dull bases (K.R. Newbey 5111) - replace: Gahnia sp. dull bases (K.R.Newbey 5111) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Freesia alba x leichtlinii + replace: Freesia alba x Freesia leichtlinii + reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Gahnia sp. Headland (G.J. Keighery 8501) replace: Gahnia sp. Headland (G.J.Keighery 8501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. L (K.R. Newbey 7888) replace: Gahnia sp. L (K.R.Newbey 7888) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gahnia sp. dull bases (K.R. Newbey 5111) + replace: Gahnia sp. dull bases (K.R.Newbey 5111) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Gastrolobium sp. East Peak (E.D. Middleton EDM 43) replace: Gastrolobium sp. East Peak (E.D.Middleton EDM 43) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Harvey (G.J. Keighery 16821) replace: Gastrolobium sp. Harvey (G.J.Keighery 16821) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Prostrate Boddington (M. Hislop 2130) replace: Gastrolobium sp. Prostrate Boddington (M.Hislop 2130) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium wonganense replace: Gastrolobium wonganensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A. Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A.Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Marchagee (A. Crawford ADC 1353) replace: Geleznowia sp. Marchagee (A.Crawford ADC 1353) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia verrucosa subsp. Kalbarri replace: Geleznowia verrucosa subsp. Kalbarri (L.M.Broadhurst 123) L.M.Broadh. reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Genus sp. Hamersley Range hilltops (S. van Leeuwen 4345) replace: Genus sp. Hamersley Range hilltops (S.van Leeuwen 4345) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Nillup (R.D. Royce 98) replace: Genus sp. Nillup (R.D.Royce 98) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonota replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine lactovirens replace: Glycine lactivirens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Billabong (B. Nordenstam & A. Anderberg 203) replace: Gnephosis sp. Billabong (B.Nordenstam & A.Anderberg 203) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Norseman (K.R. Newbey 8096) replace: Gnephosis sp. Norseman (K.R.Newbey 8096) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Pt Quobba (P.G. Wilson 12622) replace: Gnephosis sp. Pt Quobba (P.G.Wilson 12622) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Stirling Range (C.F. Wilkins et al. CW 2513) replace: Gompholobium sp. Stirling Range (C.F.Wilkins et al. CW 2513) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Belele (D.W. Goodall 3215) replace: Gomphrena sp. Belele (D.W.Goodall 3215) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Maret Islands (A.A. Mitchell 5414) replace: Gomphrena sp. Maret Islands (A.A.Mitchell 5414) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia affinis de replace: Goodenia affinis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pinifolia de replace: Goodenia pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pulchella subsp. Coastal Plain A replace: Goodenia pulchella subsp. Coastal Plain A (M.Hislop 634) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Coastal Plain B replace: Goodenia pulchella subsp. Coastal Plain B (L.W.Sage 2336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Dragon Rocks replace: Goodenia pulchella subsp. Dragon Rocks (A.M.Coates 3374) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Mt Barker replace: Goodenia pulchella subsp. Mt Barker (K.F.Kenneally 1166) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Wheatbelt replace: Goodenia pulchella subsp. Wheatbelt (L.W.Sage & F.Hort 795) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia sp. Bachsten Creek (M.D. Barrett 685) replace: Goodenia sp. Bachsten Creek (M.D.Barrett 685) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Beyondie (L.W. Sage & S. van Leeuwen LWS 2518) replace: Goodenia sp. Beyondie (L.W.Sage & S.J.van Leeuwen LWS 2518) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Carnarvon Range (D.J. Edinger Nats 30) replace: Goodenia sp. Carnarvon Range (D.J.Edinger Nats 30) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Dampier Peninsula (B.J. Carter 675) replace: Goodenia sp. Dampier Peninsula (B.J.Carter 675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Little Sandy Desert (A.S. Mitchell 989) replace: Goodenia sp. Little Sandy Desert (A.S.Mitchell 989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mount Bomford (M.D. Barrett 423) replace: Goodenia sp. Mount Bomford (M.D.Barrett 423) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mt Elvire (D.J. Edinger 1857) replace: Goodenia sp. Mt Elvire (D.J.Edinger 1857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. South Coast (A.R. Annels ARA 1846) replace: Goodenia sp. South Coast (A.R.Annels 1846) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Stirling Range (R. Cranfield & D. Kabay 9148) replace: Goodenia sp. Stirling Range (R.Cranfield & D.Kabay 9148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia xanthotricha de replace: Goodenia xanthotricha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grammosolen sp. Mt Ridley (W.R. Archer 1210911) replace: Grammosolen sp. Mt Ridley (W.R.Archer 1210911) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Gunapin (F. Hort 308) replace: Grevillea sp. Gunapin (F.Hort 308) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Stirling Range (D.J. McGillivray 3488 & A.S. George) replace: Grevillea sp. Stirling Range (D.J.McGillivray 3488 & A.S.George) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Victoria Desert (R. Davis et al. RD 11611) replace: Grevillea sp. Victoria Desert (R.Davis et al. RD 11611) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Yerilgee Hills (T. Laslett TL 025) replace: Grevillea sp. Yerilgee Hills (T.Laslett TL 025) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea squiresae replace: Grevillea squiresiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gunniopsis sp. Nuytsland (G.J. Keighery & J.J. Alford 522) replace: Gunniopsis sp. Nuytsland (G.J.Keighery & J.J.Alford 522) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon sp. Whoogarup Range (A.S. George 1910) replace: Gyrostemon sp. Whoogarup Range (A.S.George 1910) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum sp. A Kimberley Flora (K.F. Kenneally 8639) replace: Haemodorum sp. A Kimberley Flora (K.F.Kenneally 8639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea sp. Great Victoria Desert (L. Cockram LAC 139) - replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) + replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (B. Keighery 2599) replace: Hakea sp. Walyunga (B.Keighery 2599) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (L. Penn s.n.) replace: Hakea sp. Walyunga (L.Penn s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Yalgorup (B.J. Keighery & N. Gibson 897) replace: Hakea sp. Yalgorup (B.J.Keighery & N.Gibson 897) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. A Kimberley Flora (H.A. Johnson 5123) replace: Halgania sp. A Kimberley Flora (H.A.Johnson 5123) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Peak Eleanora (M.A. Burgman 3547 B) replace: Halgania sp. Peak Eleanora (M.A.Burgman 3547 B) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Wongan Hills (K.F. Kenneally 2393) replace: Halgania sp. Wongan Hills (K.F.Kenneally 2393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. Lake Grace replace: Halosarcia halocnemoides subsp. Lake Grace ( N.Casson G231.10) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia sp. Lake Moore (M.N. Lyons 2603) replace: Halosarcia sp. Lake Moore (M.N.Lyons 2603) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa sp. Eremaean (A.S. George 3894) replace: Harmsiodoxa sp. Eremaean (A.S.George 3894) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Bachsten Creek (R.L. Barrett & M.D. Barrett RLB 3808) replace: Helicteres sp. Bachsten Creek (R.L.Barrett & M.D.Barrett RLB 3808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Carson River (I. Cowie & Wendell IC 4232) replace: Helicteres sp. Carson River (I.Cowie & Wendell IC 4232) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Manning Peak (K.F. Kenneally 10266 & B.P.M. Hyland) replace: Helicteres sp. Manning Peak (K.F.Kenneally 10266 & B.P.M.Hyland) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mertens Falls (K.F. Kenneally 7887) replace: Helicteres sp. Mertens Falls (K.F.Kenneally 7887) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mt Shadforth (I.R. Telford 11609) replace: Helicteres sp. Mt Shadforth (I.R.Telford 11609) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Arrino (J.J. Alford 1175) replace: Hemigenia sp. Arrino (J.J.Alford 1175) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Cue (K.F. Kenneally 47A) replace: Hemigenia sp. Cue (K.F.Kenneally 47A) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Dalwallinu (W.E. Blackall 2870) replace: Hemigenia sp. Dalwallinu (W.E.Blackall 2870) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Edah (J.W. Green 1601) replace: Hemigenia sp. Edah (J. W.Green 1601) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Gibson (R. Coveny 7893 & B.R. Maslin) replace: Hemigenia sp. Gibson (R.Coveny 7893 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Glenburgh (R.J. Cranfield 9725) replace: Hemigenia sp. Glenburgh (R.J.Cranfield 9725) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Jibberding (J. D'Alonzo 418) replace: Hemigenia sp. Jibberding (J.D'Alonzo 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Hemigenia sp. major (C.A. Gardner 2677) - replace: Hemigenia sp. major (C.A.Gardner 2677) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Merredin (M. Koch 2959) replace: Hemigenia sp. Merredin (M.Koch 2959) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Newdegate (E. Bishop 75) replace: Hemigenia sp. Newdegate (E.Bishop 75) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Paynes Find (A.C. Beauglehole 49138) replace: Hemigenia sp. Paynes Find (A.C.Beauglehole 49138) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Pindar (H. Demarz 7428) replace: Hemigenia sp. Pindar (H.Demarz 7428) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Tallering (H. Pringle 3323) replace: Hemigenia sp. Tallering (H.Pringle 3323) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Wilroy (B.J. Conn 2150) replace: Hemigenia sp. Wilroy (B.J.Conn 2150) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yalgoo (A.M. Ashby 2624) replace: Hemigenia sp. Yalgoo (A.M.Ashby 2624) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yuna (A.C. Burns 95) replace: Hemigenia sp. Yuna (A.C.Burns 95) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hemigenia sp. major (C.A. Gardner 2677) + replace: Hemigenia sp. major (C.A.Gardner 2677) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Hibbertia sp. A Kimberley Flora (T.E.H. Aplin et al. 898) replace: Hibbertia sp. A Kimberley Flora (T.E.H.Aplin et al. 898) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Kojonup (C.M. Lewis 288) replace: Hibbertia sp. Kojonup (C.M.Lewis 288) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Tathra (M.A. Langley & J.M. Harvey 1873) replace: Hibbertia sp. Tathra (M.A.Langley & J.M.Harvey 1873) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. A Kimberley Flora (E.A. Chesterfield 310) replace: Hibiscus sp. A Kimberley Flora (E.A.Chestfield 310) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. B Kimberley Flora (P.G. Wilson 11143) replace: Hibiscus sp. B Kimberley Flora (P.G.Wilson 11143) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Canga (P.J.H. Hurter & J. Naaykens 11013) replace: Hibiscus sp. Canga (P.J.H.Hurter & J.Naaykens 11013) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Brockman (E. Thoma ET 1354) replace: Hibiscus sp. Mt Brockman (E.Thoma ET 1354) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Robinson (G. Byrne 3537) replace: Hibiscus sp. Mt Robinson (G.Byrne 3537) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Theda (M.D. Barrett & R.L. Barrett MDB 2144) replace: Hibiscus sp. Theda (M.D.Barrett & R.L.Barrett MDB 2144) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Wonganoo Station (K. Boladeras 125) replace: Hibiscus sp. Wonganoo Station (K.Boladeras 125) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydatella sp. Austin Bay (N. Gibson & M. Lyons 2387) replace: Hydatella sp. Austin Bay (N.Gibson & M.Lyons 2387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coorowensis replace: Hydrocotyle coorowensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coraginaensis replace: Hydrocotyle coraginaensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle crassipes replace: Hydrocotyle crassipes MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle decipiens replace: Hydrocotyle decipiens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle hexaptera replace: Hydrocotyle hexaptera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Truslove (M.A. Burgman 4419) replace: Hydrocotyle sp. Truslove (M.A.Burgman 4419) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Warriedar (P.G. Wilson 12267) replace: Hydrocotyle sp. Warriedar (P.G.Wilson 12267) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle vigintimilia replace: Hydrocotyle vigintimilia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20896) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cataby (G.J. Keighery 5151) replace: Hypocalymma sp. Cataby (G.J.Keighery 5151) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis sp. Prince Regent River (M.D. Barrett 924 B) replace: Hypoxis sp. Prince Regent River (M.D.Barrett 924 B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera mackinlayi replace: Indigofera mckinlayi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. A Kimberley Flora (G.J. Keighery & N. Gibson 70) replace: Indigofera sp. A Kimberley Flora (G.J.Keighery & N.Gibson 70) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Bungaroo Creek (S. van Leeuwen 4301) replace: Indigofera sp. Bungaroo Creek (S.van Leeuwen 4301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Mackinlayi (A.A. Mitchell 7086) replace: Indigofera sp. Mackinlayi (A.A.Mitchell 7086) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Warburton (A.A. Munir 5209) replace: Indigofera sp. Warburton (A.A.Munir 5209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. A Kimberley Flora (L.J. Penn 84) replace: Ipomoea sp. A Kimberley Flora (L.J.Pen 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. Kalumburu (A.A. Mitchell 3869B) replace: Ipomoea sp. Kalumburu (A.A.Mitchell 3869B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Canning Reservoir (M.D. Tindale 121 & B.R. Maslin) replace: Isopogon sp. Canning Reservoir (M.D.Tindale 121 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Darling Range (F. Hort 1662) replace: Isopogon sp. Darling Range (F.Hort 1662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Ravensthorpe (D.B. Foreman 1207) replace: Isopogon sp. Ravensthorpe (D.B.Foreman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Watheroo (D. Foreman 477) replace: Isopogon sp. Watheroo (D.Foreman 477) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. cristata replace: Isotoma hypocrateriformis var. cristata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotropis sp. Arid zone (G. Byrne 2775) replace: Isotropis iophyta reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Shark Bay (M.E. Trudgen 7170) replace: Isotropis sp. Shark Bay (M.E.Trudgen 7170) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Yalgoo (S. Patrick 2375) replace: Isotropis petrensis reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum sp. Exmouth (G. Marsh 77) replace: Jasminum sp. Exmouth (G.Marsh 77) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Marandoo (M.E. Trudgen 1554) replace: Josephinia sp. Marandoo (M.E.Trudgen 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Mt Edgar Station (N.T. Burbidge 1194) replace: Josephinia sp. Mt Edgar Station (N.T.Burbidge 1194) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia sp. South coast (T.R. Lally 1576 & I.P. Lally) replace: Kennedia sp. south coast (T.R.Lally 1576 & I.P.Lally) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia adenogyna replace: Keraudrenia adenogyna MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. cacaobrunnea ms replace: Keraudrenia cacaobrunnea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. undulata replace: Keraudrenia cacaobrunnea subsp. undulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia saxatilis replace: Keraudrenia saxatilis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia velutina subsp. elliptica replace: Keraudrenia velutina subsp. elliptica MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia velutina subsp. velutina replace: Keraudrenia velutina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lambertia orbifolia subsp. Scott River Plains replace: Lambertia orbifolia subsp. Scott River Plains (L.W.Sage 684) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lasiopetalum leucogriseum replace: Lasiopetalum leucogriseum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A. Griffin 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E. Ried 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E.Reid 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Denmark (B.G. Hammersley 2012) replace: Lasiopetalum sp. Denmark (B.G.Hammersley 2012) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Desmond (N. McQuoid 653) replace: Lasiopetalum sp. Desmond (N.McQuoid 653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Hill River (T.N. Stoate 5) replace: Lasiopetalum sp. Hill River (T.N.Stoate 5) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Kukerin (C.A. Gardner 13646) replace: Lasiopetalum sp. Kukerin (C.A.Gardner 13646) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Caroline (S.D. Hopper SDH 6381) replace: Lasiopetalum sp. Mount Caroline (S.D.Hopper SDH 6381) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Lesueur (E.A. Griffin 1997) replace: Lasiopetalum sp. Mount Lesueur (E.A.Griffin 1997) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mt Ragged (T.E.H. Aplin 4349) replace: Lasiopetalum sp. Mt Ragged (T.E.H.Aplin 4349) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Northam (F. Hort 1196) replace: Lasiopetalum sp. Northam (F.Hort 1196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Toodyay (F. Hort 2689) replace: Lasiopetalum sp. Toodyay (F.Hort 2689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K. Shepherd & C. Wilkins KS 220) replace: Lasiopetalum erectifolium reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Weam Reserve (M. Hislop 2755) replace: Lasiopetalum sp. Weam Reserve (M.Hislop 2755) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea pinnacula replace: Latrobea pinnaculum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea sp. South Coast (A.M. Ashby 1949) replace: Latrobea sp. South Coast (A.M.Ashby 1949) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencia sp. Anna Plains (N.T. Burbidge 1433) replace: Lawrencia sp. Anna Plains (N.T.Burbidge 1433) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia formosa subsp. Wheatbelt replace: Lechenaultia formosa subsp. 'Wheatbelt' (R.J.Cranfield 4718) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidobolus preissianus subsp. arcuatus replace: Lepidobolus preissianus subsp. 'arcuatus' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidosperma sp. A2 Island Flat (G.J. Keighery 7000) replace: Lepidosperma sp. A2 Island Flat (G.J.Keighery 7000) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Giant Terete Culms (S.D. Hopper 8631) replace: Lepidosperma sp. Giant Terete Culms (S.D.Hopper 8631) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. K Boorabbin (K.L. Wilson 2579) replace: Lepidosperma sp. K Boorabbin (K.L.Wilson 2579) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. U1 big heads (A.S. George 11294) replace: Lepidosperma sp. U1 big heads (A.S.George 11294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Z dark sheath (P.G. Wilson 10177) replace: Lepidosperma sp. Z dark sheath (P.G.Wilson 10177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema cervicorne replace: Leptosema cervicornu reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum sp. Peak Charles/Norseman (K.R. Newbey 5243) replace: Leptospermum sp. Peak Charles/Norseman (K.R.Newbey 5243) reason: Manual match to APC accepted name (Elizabeth Wenk, 2022-11-21) @@ -2818,903 +2830,903 @@ taxonomic_updates: - find: Leucanthemum xsuperbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon compressicarpus replace: Leucopogon compressicarpus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon inflexifolius replace: Leucopogon inflexifolius MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Badgingarra (R. Davis 421) replace: Leucopogon sp. Badgingarra (R.Davis 421) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Barren Range (A.S. George 10092) replace: Leucopogon sp. Barren Range (A.S.George 10092) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bifid Eneabba (M. Hislop 1927) replace: Leucopogon sp. Bifid Eneabba (M.Hislop 1927) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bindoon (F. Hort 2766) replace: Leucopogon sp. Bindoon (F.Hort 2766) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bonnie Hill (K.R. Newbey 9831) replace: Leucopogon sp. Bonnie Hill (K.R.Newbey 9831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Boyagin (M. Hislop 2825) replace: Leucopogon sp. Boyagin (M.Hislop 2825) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bremer Bay (K.R. Newbey 4667) replace: Leucopogon sp. Bremer Bay (K.R.Newbey 4667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Brookton (K. Kershaw & L. Kerrigan KK 2192) replace: Leucopogon sp. Brookton (K.Kershaw & L.Kerrigan KK2192) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bungulla (R.D. Royce 3435) replace: Leucopogon sp. Bungulla (R.D.Royce 3435) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Cape Arid (M. Paxman 50) replace: Leucopogon sp. Cape Arid (M.Paxman 50) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) - replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Clyde Hill (M.A. Burgman 1207) replace: Leucopogon sp. Clyde Hill (M.A.Burgman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coolgardie (M. Hislop & F. Hort MH 3197) replace: Leucopogon sp. Coolgardie (M.Hislop & F.Hort MH3197) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Corrigin (K. Kershaw KK 2091) replace: Leucopogon sp. Corrigin (K.Kershaw KK2091) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Darradup (R.D. Royce 2998) replace: Leucopogon sp. Darradup (R.D.Royce 2998) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Denmark (J.M. Powell 1167) replace: Leucopogon sp. Denmark (J.M.Powell 1167) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Flynn (F. Hort, J. Hort & A. Lowrie 859) replace: Leucopogon sp. Flynn (F.Hort, J.Hort & A.Lowrie 859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Gunapin (F. Hort 808) replace: Leucopogon sp. Gunapin (F.Hort 808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Howatharra (D. & N. McFarland 1046) replace: Leucopogon sp. Howatharra (D. & N.McFarland 1046) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ironcaps (N. Gibson & K. Brown 3070) replace: Leucopogon sp. Ironcaps (N.Gibson & K.Brown 3070) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kalbarri (J.M. Powell 1695) replace: Leucopogon sp. Kalbarri (J.M.Powell 1695) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kau Rock (M.A. Burgman 1126) replace: Leucopogon sp. Kau Rock (M.A.Burgman 1126) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lesueur (B. Evans 530) replace: Leucopogon sp. Lesueur (B.Evans 530) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lort River (M. Golding 3) replace: Leucopogon sp. Lort River (M.Golding 3) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Margaret River (J. Scott 207) replace: Leucopogon sp. Margaret River (J.Scott 207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mid West (J.S. Beard 7388) replace: Leucopogon sp. Mid West (J.S.Beard 7388) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moore River (M. Hislop 1695) replace: Leucopogon sp. Moore River (M.Hislop 1695) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moresby Range (S. Patrick 2614) replace: Leucopogon sp. Moresby Range (S.Patrick 2614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mount Heywood (M.A. Burgman 1211) replace: Leucopogon sp. Mount Heywood (M.A.Burgman 1211) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Murdoch (M. Hislop 1037) replace: Leucopogon sp. Murdoch (M.Hislop 1037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ongerup (A.S. George 16682) replace: Leucopogon sp. Ongerup (A.S.George 16682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) - replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Pingrup (W.E. Blackall 3010) replace: Leucopogon sp. Pingrup (W.E.Blackall 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Roberts Swamp (K.R. Newbey 8173) replace: Leucopogon sp. Roberts Swamp (K.R.Newbey 8173) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Salt Lake (G.F. Craig 3069) replace: Leucopogon sp. Salt Lake (G.F.Craig 3069) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. South Coast (K.R. Newbey 8213) replace: Leucopogon sp. South Coast (K.R.Newbey 8213) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Southern Granite (E.D. Middleton EDM 266) replace: Leucopogon sp. Southern Granite (E.D.Middleton EDM266) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Twertup (K.R. Newbey 10859) replace: Leucopogon sp. Twertup (K.Newbey 10859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Walpole (R.J. Cranfield 10940) replace: Leucopogon sp. Walpole (R.J.Cranfield 10940) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wandering (F. Hort 419) replace: Leucopogon sp. Wandering (F.Hort 419) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Warradarge (M. Hislop 1908) replace: Leucopogon sp. Warradarge (M.Hislop 1908) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wheatbelt (S. Murray 257) replace: Leucopogon sp. Wheatbelt (S.Murray 257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Whicher Range (G.J. Keighery 11763) replace: Leucopogon sp. Whicher Range (G.J.Keighery 11763) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Windy Harbour (A. Strid 21460) replace: Leucopogon sp. Windy Harbour (A.Strid 21460) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanchep (M. Hislop 1986) replace: Leucopogon sp. Yanchep (M.Hislop 1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanneymooning (F. Mollemans 3797) replace: Leucopogon sp. Yanneymooning (F.Mollemans 3797) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) + replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) + replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Lobelia rhombifolia de replace: Lobelia rhombifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium perenne x rigidum replace: Lolium perenne subsp. rigidum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium xhubbardii replace: Lolium x hubbardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysinema ciliatum forma replace: Lysinema ciliatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Patience (C.P. Campbell 1052) replace: Maireana sp. Patience (C.P.Campbell 1052) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Adelong (G.J. Keighery 11825) replace: Malleostemon sp. Adelong (G.J.Keighery 11825) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooljarloo (B. Backhouse s.n. 16/11/88) replace: Malleostemon sp. Cooljarloo (B.Backhouse s.n. 16/11/88) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooloomia (S.D. Hopper 1353) replace: Malleostemon sp. Cooloomia (S.D.Hopper 1353) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Erangy Springs (M.E. Trudgen 12030) replace: Malleostemon sp. Erangy Springs (M.E.Trudgen 12030) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Hardabutt Rapids (D. Bellairs 1654A) replace: Malleostemon sp. Hardabutt Rapids (D.Bellairs 1654A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Kalbarri (L.A. Craven 7083) replace: Malleostemon sp. Kalbarri (L.A.Craven 7083) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Moonyoonooka (R.J. Cranfield 2947) replace: Malleostemon sp. Moonyoonooka (R.J.Cranfield 2947) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Mullewa (P. Winson B7365) replace: Malleostemon sp. Mullewa (P.Winson B7365) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Nerren Nerren (A. Payne 360) replace: Malleostemon sp. Nerren Nerren (A.Payne 360) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Officer Basin (D. Pearson 350) replace: Malleostemon sp. Officer Basin (D.Pearson 350) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Woolgorong Station (M. Officer 100) replace: Malleostemon sp. Woolgorong Station (M.Officer 100) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Yerina (S.J. Patrick 2728) replace: Malleostemon sp. Yerina (S.J.Patrick 2728) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp. Bremer (N. Gibson & M. Lyons 1776) replace: Marianthus sp. Bremer (N.Gibson & M.Lyons 1776) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. Mt Windell (S. van Leeuwen 846) replace: Maytenus sp. Mt Windell (S.van Leeuwen 846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Dongolocking (G.J. Keighery & N. Gibson 2896) replace: Melaleuca sp. Dongolocking (G.J.Keighery & N.Gibson 2896) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Gorse (A.S. George 7224) replace: Melaleuca sp. Gorse (A.S.George 7224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca xarenicola replace: Melaleuca x arenicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita var. citrata replace: Mentha x piperita var. citrata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha xpiperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Merremia sp. B Kimberley Flora (B.J. Carter 533) replace: Merremia sp. B Kimberley Flora (B.J.Carter 533) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Boxwood (K.R. Newbey 4200) replace: Microcorys sp. Boxwood (K.R.Newbey 4200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Forrestania (V. English 2004) replace: Microcorys sp. Forrestiana (V.English 2004) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Mt Gibson (S. Patrick 2098) replace: Microcorys sp. Mt Gibson (S.Patrick 2098) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Microcorys sp. stellate (A. Strid 21885) - replace: Microcorys sp. stellate (A.Strid 21885) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Tarin Rock (E.J. Croxford 5251) replace: Microcorys sp. Tarin Rock (E.J.Croxford 5251) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Microcorys sp. stellate (A. Strid 21885) + replace: Microcorys sp. stellate (A.Strid 21885) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Micromyrtus racemosa var. Jingemarra replace: Micromyrtus racemosa var. Jingemarra (R.J.Cranfield 5253a) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus triptycha subsp. elata replace: Micromyrtus triptycha subsp. elata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. longiflora replace: Micromyrtus triptycha subsp. longiflora MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia bursarioides replace: Mirbelia bursarioides MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia cordifolia replace: Mirbelia cordifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia magentea replace: Mirbelia magentea MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Bursarioides (T.R. Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Carnarvon (J.S. Beard 6008) replace: Mirbelia sp. Carnarvon (J.S.Beard 6008) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Denham (W.E. Blackall 556) replace: Mirbelia sp. Denham (W.E.Blackall 556) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Helena & Aurora (B.J. Lepschi 2003) replace: Mirbelia sp. Helena & Aurora (B.J.Lepschi 2003) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) - replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Kalbarri (M.D. Crisp 6261) replace: Mirbelia sp. Kalbarri (M.D.Crisp 6261) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Magentea (T.E.H. Aplin 5976) replace: Mirbelia sp. Magentea (T.E.H.Aplin 5976) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Mt Heywood (T.E.H. Aplin 4154) replace: Mirbelia sp. Mt Heywood (T.E.H.Aplin 4154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Ternata (M.D. Crisp & L.G. Cook MDC 9267) replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Zuytdorp (G.J. Keighery & N. Gibson 1688) replace: Mirbelia sp. Zuytdorp (G.J.Keighery & N.Gibson 1688) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) + replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Mukia sp. A Kimberley Flora (K.F. Kenneally 7909) replace: Mukia sp. A Kimberley Flora (K.F.Kenneally 7909) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. D Flora of Australia (A.A. Mitchell PRP 1121) replace: Mukia sp. D Flora of Australia (A.A.Mitchell PRP 1121) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia sp. Hamersley Station (A.A. Mitchell PRP 1479) replace: Oldenlandia sp. Hamersley Station (A.A.Mitchell PRP 1479) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia brachyglossa replace: Olearia brachyglossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. eremicola replace: Olearia dampieri subsp. eremicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ornithogalum longebracteatum replace: Ornithogalum longibracteatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion microphyllum replace: Otion microphyllum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion simplicifolium replace: Otion simplicifolium MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion tortile replace: Otion tortile MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium australe subsp. australe ms replace: Pelargonium australe var. australe reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium australe subsp. drummondii replace: Pelargonium australe subsp. drummondii MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pelargonium xasperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xdomesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pentalepis sp. Mt House (E.M. Bennett 1877) replace: Pentalepis sp. Mt House (E.M.Bennett 1877) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T. Burbidge & A. Kanis 8158) replace: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T.Burbidge & A.Kanis 8158) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S. Weston 12768) replace: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S.Weston 12768) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile squamata subsp. squamata replace: Petrophile squamata subsp. squamata MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petunia xhybrida replace: Petunia x hybrida reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Mt Gibbs (G.F. Craig 6658) replace: Phebalium sp. Mt Gibbs (G.F.Craig 6658) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Yerilgee Sandplain (J. Jackson 223) replace: Phebalium sp. Yerilgee Sandplain (J.Jackson 223) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca sp. Latham (F. Keast L4B 043) replace: Philotheca sp. Latham (F.Keast L4B 043) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca spicata subsp. Moore River National Park replace: Philotheca spicata subsp. Moore River National Park (G. & D.Woodman Op 47) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus sp. D Kimberley Flora (C.R. Dunlop 5302) replace: Phyllanthus sp. D Kimberley Flora (C.R.Dunlop 5302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilostyles sp. Northern Sandplains (P. Armstrong s.n. PERTH 06590179) replace: Pilostyles sp. Northern Sandplains (P.Armstrong s.n. PERTH 06590179) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Tarin Rock (E.J. Croxford 2118) replace: Pimelea sp. Tarin Rock (E.J.Croxford 2118) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Hamersley (M.E. Trudgen 11207) replace: Plantago sp. Hamersley (M.E.Trudgen 11207) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Mt Magnet (A.S. George 6793) replace: Plantago sp. Mt Magnet (A.S.George 6793) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus xhispanica replace: Platanus x hispanica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Eneabba (R. Hnatiuk 770001) replace: Platysace sp. Eneabba (R.Hnatiuk 770001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kalbarri (D. & B. Bellairs 1383) replace: Platysace sp. Kalbarri (D. & B.Bellairs 1383) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kennedy (P.G. Wilson 8450) replace: Platysace sp. Kennedy (P.G.Wilson 8450) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Stirling (J.M. Fox 88/262) replace: Platysace sp. Stirling (J.M.Fox 88/262) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea sp. B Kimberley Flora (K.F. Kenneally 9526A) replace: Pluchea sp. B Kimberley Flora (K.F.Kenneally 9526A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Carnarvon Range (D.J. Edinger Nats 33) replace: Podolepis sp. Carnarvon Range (D.J.Edinger Nats 33) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Great Victoria Desert (A.S. George 8219) replace: Podolepis sp. Great Victoria Desert (A.S.George 8219) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea sp. A Kimberley Flora (K.F. Kenneally 8887) replace: Polycarpaea sp. A Kimberley Flora (K.F.Kenneally 8887) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. A Kimberley Flora (K.F. Kenneally 7752) replace: Polygala sp. A Kimberley Flora (K.F.Kenneally 7752) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. B Kimberley Flora (T.E.H. Aplin et al. 715) replace: Polygala sp. B Kimberley Flora (T.E.H.Aplin et al. 715) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria sp. A Kimberley Flora (T.E.H. Aplin et al. 418) replace: Polymeria sp. A Kimberley Flora (T.E.H.Aplin et al. 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. desert (A.S. George 11968) replace: Pomax sp. desert (A.S.George 11968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poranthera sp. Kings Park (R.L. Barrett 2958) replace: Poranthera sp. Kings Park (R.L.Barrett 2958) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bruce Rock (J. Buegge D36) replace: Pseudactinia sp. Bruce Rock (J.Buegge D36) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bungalbin Hill (F.H. & M.P. Mollemans 3069) replace: Pseudactinia sp. Bungalbin Hill (F.H. & M.P.Mollemans 3069) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon sp. A Kimberley Flora (B.J. Carter 599) replace: Pterocaulon sp. A Kimberley Flora (B.J.Carter 599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. broad petals (S.D. Hopper 4429) - replace: Pterostylis sp. broad petals (S.D.Hopper 4429) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Arid (G. Brockman GBB 263) replace: Pterostylis sp. Cape Arid (G.Brockman GBB 263) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Le Grand (I. Solomon 550) replace: Pterostylis sp. Cape Le Grand (I.Solomon 550) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. Helena River (G. Brockman GBB 340) + replace: Pterostylis sp. Helena River (G.Brockman GBB 340) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Karri forest (W. Jackson BJ270) + replace: Pterostylis sp. Karri forest (W.Jackson BJ270) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Northampton (S.D. Hopper 3349) + replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) + replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) + replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) + replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. broad petals (S.D. Hopper 4429) + replace: Pterostylis sp. broad petals (S.D.Hopper 4429) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Pterostylis sp. cauline leaves (N. Gibson & M.N. Lyons 1490) replace: Pterostylis sp. cauline leaves (N.Gibson & M.N.Lyons 1490) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. clubbed snail orchid (R. Davis 8088) replace: Pterostylis sp. clubbed snail orchid (R.Davis 8088) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. crinkled leaf (G.J. Keighery 13426) replace: Pterostylis sp. crinkled leaf (G.J.Keighery 13426) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. dainty brown (N. Gibson & M. Lyons 3690) replace: Pterostylis sp. dainty brown (N.Gibson & M.Lyons 3690) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. elegant snail orchid (G. Brockman GBB 1194) replace: Pterostylis sp. elegant snail orchid (G.Brockman GBB 1194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. exserted labellum (A.C. Beauglehole 12194) replace: Pterostylis sp. exserted labellum (A.C.Beauglehole 12194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. extended dorsal sepal (G. Paull 731) replace: Pterostylis sp. extended dorsal sepal (G.Paull 731) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. fragile (S. Barrett 553) replace: Pterostylis sp. fragile (S.Barrett 553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. granite (W. Jackson BJ351) replace: Pterostylis sp. granite (W.Jackson BJ351) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Helena River (G. Brockman GBB 340) - replace: Pterostylis sp. Helena River (G.Brockman GBB 340) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. inland (A.C. Beauglehole 11880) replace: Pterostylis sp. inland (A.C.Beauglehole 11880) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Karri forest (W. Jackson BJ270) - replace: Pterostylis sp. Karri forest (W.Jackson BJ270) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. late flowering (W. Jackson BJ298) replace: Pterostylis sp. late flowering (W.Jackson BJ298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. limestone (B.J. Keighery & G.J. Keighery 65) replace: Pterostylis sp. limestone (B.J.Keighery & G.J.Keighery 65) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. mid-west coast (G. Brockman GBB134) replace: Pterostylis sp. mid-west coast (G.Brockman GBB134) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. miniature (J.R. Wheeler 3298) replace: Pterostylis sp. miniature (J.R.Wheeler 3298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Northampton (S.D. Hopper 3349) - replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) - replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. red flowered (W. Jackson BJ269) replace: Pterostylis sp. red flowered (W.Jackson BJ269) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. robust (W. Jackson BJ294) replace: Pterostylis sp. robust (W.Jackson BJ294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. scooped sepals (G. Brockman GBB386) replace: Pterostylis sp. scooped sepals (G.Brockman GBB386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. short sepals (W. Jackson BJ259) replace: Pterostylis sp. short sepals (W.Jackson BJ259) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) - replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. small stature (W. Jackson BJ303) replace: Pterostylis sp. small stature (W.Jackson BJ303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) - replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. striped sepal greenhood (G. Brockman GBB355) replace: Pterostylis sp. striped sepal greenhood (G.Brockman GBB355) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. yellow eared (W. Jackson BJ359) replace: Pterostylis sp. yellow eared (W.Jackson BJ359) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus humilis subsp. humilis replace: Ptilotus humilis var. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus humilis subsp. parviflorus replace: Ptilotus humilis var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus sp. Beaufort River (G.J. Keighery 16554) replace: Ptilotus sp. Beaufort River (G.J.Keighery 16554) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Burnerbinmah (S. Patrick 2787) replace: Ptilotus sp. Burnerbinmah (S.Patrick 2787) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Mt Narryer (A.S. George 17484) replace: Ptilotus sp. Mt Narryer (A.S.George 17484) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Northampton (R. Davis 10952) replace: Ptilotus sp. Northampton (R.Davis 10952) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Porongurup (R. Davis 10805) replace: Ptilotus sp. Porongurup (R.Davis 10805) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Puccinellia sp. Warren Road (M.N. Lyons 2710) replace: Puccinellia sp. Warren Road (M.N.Lyons 2710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Kundip (G.F. Craig 6008) replace: Pultenaea sp. Kundip (G.F.Craig 6008) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (J.S. Beard 7827) replace: Pultenaea sp. Mt Lesueur (J.S.Beard 7827) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (L.A. Orthia 86) replace: Pultenaea sp. Mt Lesueur (L.A.Orthia 86) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. southern (L.A. Orthia 39) replace: Pultenaea sp. southern (L.A.Orthia 39) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia sp. Watheroo (R.J. Cranfield & P.J. Spencer 8183) replace: Rhagodia sp. Watheroo (R.J.Cranfield & P.J.Spencer 8183) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe pollackii replace: Rhodanthe polakii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe sp. Overlander (P.S. Short 2096) replace: Rhodanthe sp. Overlander (P.S.Short 2096) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. A Kimberley Flora (C.R. Dunlop 5329) replace: Rhynchospora sp. A Kimberley Flora (C.R.Dunlop 5329) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. B Kimberley Flora (A.S. Weston 12363) replace: Rhynchospora sp. B Kimberley Flora (A.S.Weston 12363) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus xloganobaccus replace: Rubus x loganobaccus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruellia sp. A Kimberley Flora (K.F. Kenneally 9007) replace: Ruellia sp. A Kimberley Flora (K.F.Kenneally 9007) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia apella replace: Rulingia apella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia sp. Trigwell Bridge (R. Smith s.n. 20.6.89) replace: Rulingia sp. Trigwell Bridge (R.Smith s.n. 20.6.1989) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xjohannis-moorei replace: Rumex x johannis-moorei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xmuretii replace: Rumex x muretii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpratensis replace: Rumex x pratensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpseudopulcher replace: Rumex x pseudopulcher reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xschultzei replace: Rumex x schultzei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia xmolesta replace: Salvinia x molesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Millstream (M.I.H. Brooker 2076) replace: Samolus sp. Millstream (M.I.H.Brooker 2076) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Shark Bay (M.E. Trudgen 7410) replace: Samolus sp. Shark Bay (M.E.Trudgen 7410) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sauropus sp. Woolgorong (M. Officer s.n. 10/8/94) replace: Sauropus sp. Woolgorong (M.Officer s.n. 10/8/94) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola humifusa de replace: Scaevola humifusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de replace: Scaevola repens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de var. repens replace: Scaevola repens var. repens reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola repens subsp. Northern Sandplains replace: Scaevola repens subsp. Northern Sandplains (R.J.Cranfield & P.J.Spencer 8445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola repens var. angustifolia de replace: Scaevola repens var. angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola sp. Hamersley Range basalts (S. van Leeuwen 3675) replace: Scaevola sp. Hamersley Range basalts (S.van Leeuwen 3675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Lake Cairlocup (K. Newbey 9834) replace: Scaevola sp. Lake Cairlocup (K.Newbey 9834) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sesquispiculus replace: Schoenus sesquispicula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A1 Boorabbin (K.L. Wilson 2581) replace: Schoenus sp. A1 Boorabbin (K.L.Wilson 2581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A2 Kulin (B.G. Briggs 7939) replace: Schoenus sp. A2 Kulin (B.G.Briggs 7939) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 Ciliate Sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Beaufort (G.J. Keighery 6291) replace: Schoenus sp. [Schoenus sp. Beaufort (G.J. Keighery 6291); WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3723,374 +3735,374 @@ taxonomic_updates: - find: Schoenus sp. Bullsbrook (J.J. Alford 915) replace: Schoenus sp. Bullsbrook (J.J.Alford 915) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Cape Riche Cushion (G.J. Keighery 9922) replace: Schoenus sp. Cape Riche Cushion (G.J.Keighery 9922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. G Broad Sheath (K.L. Wilson 2633) replace: Schoenus sp. G Broad Sheath (K.L.Wilson 2633) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grassy (E. Gude & J. Harvey 250) replace: Schoenus sp. Grassy (E.Gude & J.Harvey 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grey Rhizome (K.L. Wilson 2922) replace: Schoenus sp. Grey Rhizome (K.L.Wilson 2922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Jindong (R.D. Royce 2485) replace: Schoenus sp. Jindong (R.D.Royce 2485) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Kalbarri (K.R. Newbey 9352) replace: Schoenus sp. Kalbarri (K.R.Newbey 9352) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Mt Barker (G.J. Keighery 9679) replace: Schoenus sp. Mt Barker (G.J.Keighery 9679) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Murchison (K.L. Wilson 2647) replace: Schoenus sp. Murchison (K.L.Wilson 2647) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Schoenus sp. smooth culms (K.R. Newbey 7823) - replace: Schoenus sp. smooth culms (Newbey 7823) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Stirling (G.J. Keighery 3427) replace: Schoenus sp. Stirling (G.J.Keighery 3427) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Toodyay (G.J. Keighery & N. Gibson 2918) replace: Schoenus sp. Toodyay (G.J.Keighery & N.Gibson 2918) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Waroona (G.J. Keighery 12235) replace: Schoenus sp. Waroona (G.J.Keighery 12235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Schoenus sp. smooth culms (K.R. Newbey 7823) + replace: Schoenus sp. smooth culms (Newbey 7823) + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-21) + taxonomic_resolution: species - find: Scholtzia sp. Ajana (T.A. Halliday 137) replace: Scholtzia sp. Ajana (T.A.Halliday 137) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu (M.E. Trudgen 2218) replace: Scholtzia sp. Binnu (M.E.Trudgen 2218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu East Road (M.E. Trudgen 12013) replace: Scholtzia sp. Binnu East Road (M.E.Trudgen 12013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. East Yuna (A.C. Burns 6) replace: Scholtzia sp. East Yuna (A.C.Burns 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eneabba (S. Maley 8) replace: Scholtzia sp. Eneabba (S.Maley 8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eradu (R.D. Royce 8016) replace: Scholtzia sp. Eradu (R.D.Royce 8016) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eurardy (J.S. Beard 6886) replace: Scholtzia sp. Eurardy (J.S.Beard 6886) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Folly Hill (M.E. Trudgen 12097) replace: Scholtzia sp. Folly Hill (M.E.Trudgen 12097) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Galena (W.E. Blackall 4728) replace: Scholtzia sp. Galena (W.E.Blackall 4728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Geraldton (F. Lullfitz L 3216) replace: Scholtzia sp. Geraldton (F.Lullfitz L 3216) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Gunyidi (J.D. Briggs 1721) replace: Scholtzia sp. Gunyidi (J.D.Briggs 1721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kalbarri (N. Hoyle 623) replace: Scholtzia sp. Kalbarri (N.Hoyle 623) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kojarena (A.M. Ashby 1904) replace: Scholtzia sp. Kojarena (A.M.Ashby 1904) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Murchison River (A.S. George 7098) replace: Scholtzia sp. Murchison River (A.S.George 7908) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Northampton (A. Strid 20714) replace: Scholtzia sp. Northampton (A.Strid 20174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Prowaka Springs (R.J. Cranfield & P. Spencer 8083) replace: Scholtzia sp. Prowaka Springs (R.J.Cranfield & P.Spencer RJC 8083) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Red Bluff (A. Gunness 2373) replace: Scholtzia sp. Red Bluff (A.Gunness 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ross Graham Lookout (S. Maley 6) replace: Scholtzia sp. Ross Graham Lookout (S.Maley 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Shark Bay (M.E. Trudgen 7429) replace: Scholtzia sp. Shark Bay (M.E.Trudgen 7429) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S. Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S.J.Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Whelarra (M.E. Trudgen 12018) replace: Scholtzia sp. Whelarra (M.E.Trudgen 12018) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Yandanooka (R. Soullier 646) replace: Scholtzia sp. Yandanooka (R.Soullier 646) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. B Kimberley Flora (C.R. Dunlop 5409) replace: Scleria sp. B Kimberley Flora (C.R.Dunlop 5409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. C Kimberley Flora (K.F. Kenneally 4873) replace: Scleria sp. C Kimberley Flora (K.F.Kenneally 4873) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena xgeorgei replace: Sclerolaena georgei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xartemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xcoriacea replace: Senna artemisioides subsp. x coriacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xsturtii replace: Senna artemisioides subsp. x sturtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa subsp. xluerssenii replace: Senna glutinosa subsp. x luerssenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sp. Austin (A. Strid 20210) replace: Senna sp. Austin (A.Strid 20210) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Billabong (J.D. Alonzo 721) replace: Senna sp. Billabong (J.D.Alonzo 721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Karijini (M.E. Trudgen 10392) replace: Senna sp. Karijini (M.E.Trudgen 10392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Meekatharra (E. Bailey 1-26) replace: Senna sp. Meekatharra (E.Bailey 1-26) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Tamala (M.E. Trudgen 7334A) replace: Senna sp. Tamala (M.E.Trudgen 7334A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. A Kimberley Flora (P.A. Fryxell & L.A. Craven 3900) replace: Sida sp. A Kimberley Flora (P.A.Fryxell & L.A.Craven 3900) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Articulation below (A.A. Mitchell PRP 1605) replace: Sida sp. Articulation below (A.A.Mitchell PRP1605) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Barlee Range (S. van Leeuwen 1642) replace: Sida sp. Barlee Range (S.van Leeuwen 1642) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bungle Bungles (M.I. Blackwell 219) replace: Sida sp. Bungle Bungles (M.I.Blackwell 219) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C Kimberley Flora (T.E.H. Aplin 4982) replace: Sida sp. C Kimberley Flora (T.E.H.Aplin 4982) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Carnarvon (P.S. Short 2492) replace: Sida sp. Carnarvon (P.S.Short 2492) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. dark green fruits (S. van Leeuwen 2260) - replace: Sida sp. dark green fruits (S.van Leeuwen 2260) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Excedentifolia (J.L. Egan 1925) replace: Sida sp. Excedentifolia (J.L.Egan 1925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces glabrous (H.N. Foote 32) replace: Sida sp. golden calyces glabrous (H.N.Foote 32) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces pubescent (G.J. Leach 1966) replace: Sida sp. Golden calyces pubescent (G.J.Leach 1966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hamersley Range (K. Newbey 10692) replace: Sida sp. Hamersley Range (K.Newbey 10692) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. L (A.M. Ashby 4202) replace: Sida sp. L (A.M.Ashby 4202) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (A.A. Mitchell PRP 1543) replace: Sida sp. Pilbara (A.A.Mitchell PRP1543) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pindar (A. Mitchell 3585) replace: Sida sp. Pindar (A.A.Mitchell 3585) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat (B.J. Carter 626) replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) - replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Shovelanna Hill (S. van Leeuwen 3842) replace: Sida sp. Shovelanna Hill (S.van Leeuwen 3842) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. Supplejack Station (T.S. Henshall 2345) + replace: Sida sp. Supplejack Station (T.S.Henshall 2345) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Watarrka (D.E. Albrecht 8672) + replace: Sida sp. Watarrka (D.E.Albrecht 8672) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Western sand dunes (P.K. Latz 11980) + replace: Sida sp. Western sand dunes (P.K.Latz 11980) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. dark green fruits (S. van Leeuwen 2260) + replace: Sida sp. dark green fruits (S.van Leeuwen 2260) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) + replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/1990) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/90) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Supplejack Station (T.S. Henshall 2345) - replace: Sida sp. Supplejack Station (T.S.Henshall 2345) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. tiny glabrous fruit (A.A. Mitchell PRP1152) replace: Sida sp. tiny glabrous fruit (A.A.Mitchell PRP1152) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. verrucose glands (F.H. Mollemans 2423) replace: Sida sp. verrucose glands (F.H.Mollemans 2423) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Watarrka (D.E. Albrecht 8672) - replace: Sida sp. Watarrka (D.E.Albrecht 8672) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Western sand dunes (P.K. Latz 11980) - replace: Sida sp. Western sand dunes (P.K.Latz 11980) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp. Boomerang Bay (K.F. Kenneally 10021) replace: Solanum sp. Boomerang Bay (K.F.Kenneally 10021) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum xalmum replace: Sorghum x almum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spergularia sp. 5 Leeman (G.J. Keighery & J.J. Alford 488) replace: Spergularia sp. 5 Leeman (G.J.Keighery & J.J.Alford 488) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphenotoma sp. Stirling Range (P.G. Wilson 4235) replace: Sphenotoma sp. Stirling Range (P.G.Wilson 4235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spinifex xalterniflorus replace: Spinifex x alterniflorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia sp. swollen gynophore (W.R. Barker 2041) replace: Stackhousia sp. Swollen gynophore (W.R.Barker 2041) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Battle Hill (A.L. Payne 1006) replace: Stemodia sp. Battle Hill (A.L.Payne 1006) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Onslow (A.A. Mitchell 76/148) replace: Stemodia sp. Onslow (A.A.Mitchell 76/148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium egralliforme replace: Stylidium egralliforme MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Bindoon (K.F. Kenneally 11405) replace: Stylidium sp. Bindoon (K.F.Kenneally 11405) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Boulder Rock (A.H. Burbidge 2536) replace: Stylidium sp. Boulder Rock (A.H.Burbidge 2536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Dewars Pool (K.F. Kenneally 11400) replace: Stylidium sp. Dewars Pool (K.F.Kenneally 11400) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker (E.J. Croxford 1906) replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Hamersley Station (A.A. Mitchell 196) replace: Swainsona sp. Hamersley Station (A.A.Mitchell 196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Shark Bay (M.E. Trudgen 7588) replace: Swainsona sp. Shark Bay (M.E.Trudgen 7588) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Fairbridge Farm (D. Papenfus 696) replace: Synaphea sp. Fairbridge Farm (D.Papenfus 696) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Jilakin Flat Rocks Rd (R. Butcher et. al RB200) replace: Synaphea sp. Jilakin Flat Rocks Rd (R.Butcher et al. RB200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Kwornicup (D. Trenowden 429) replace: Synaphea sp. [Synaphea sp. Kwornicup (D.Trenowden 429); WAH_2022_1] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -4104,458 +4116,446 @@ taxonomic_updates: - find: Synaphea sp. Pinjarra (R. Davis 6578) replace: Synaphea sp. Pinjarra (R.Davis 6578) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Redgate Road (J. Scott 16) replace: Synaphea sp. Redgate Road (J.Scott 16) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia mellaria replace: Tecticornia mellarium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Gunyidi (M.N. Lyons 2607) replace: Tecticornia sp. Gunyidi (M.N.Lyons 2607) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Roy Hill (H. Pringle 62) replace: Tecticornia sp. Roy Hill (H.Pringle 62) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Tephrosia rosea var. glabrior - replace: Tephrosia rosea var. glabrior MS - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Tephrosia rosea var. Napier Range replace: Tephrosia rosea var. Napier Range (C.R.Dunlop 7760 & B.K.Simon) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Tephrosia rosea var. glabrior + replace: Tephrosia rosea var. glabrior MS + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: varietas - find: Tephrosia rosea var. venulosa replace: Tephrosia rosea var. venulosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia sp. B Kimberley Flora (C.A. Gardner 7300) replace: Tephrosia sp. B Kimberley Flora (C.A.Gardner 7300) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Bungaroo Creek (M.E. Trudgen 11601) replace: Tephrosia sp. Bungaroo Creek (M.E.Trudgen 11601) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. C Kimberley Flora (K.F. Kenneally 5599) replace: Tephrosia sp. C Kimberley Flora (K.F.Kenneally 5599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Carnarvon (J.H. Ross 2681) replace: Tephrosia sp. Carnarvon (J.H.Ross 2681) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Cathedral Gorge (F.H. Mollemans 2420) replace: Tephrosia sp. Cathedral Gorge (F.H.Mollemans 2420) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Central (P.K. Latz 17037) replace: Tephrosia sp. Central (P.K.Latz 17037) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) - replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. D Kimberley Flora (R.D. Royce 1848) replace: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. deserts (J.R. Maconochie 1403) - replace: Tephrosia sp. deserts (J.R.Maconochie 1403) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Dunes (J.R. Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Durack River (C.A. Gardner 9938) replace: Tephrosia sp. Durack River (C.A.Gardner 9938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. E Kimberley Flora (C.A. Gardner 9937) replace: Tephrosia sp. E Kimberley Flora (C.A.Gardner 9937) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. F Kimberley Flora (B.R. Maslin 5139) replace: Tephrosia sp. F Kimberley Flora (B.R.Maslin 5139) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. G Kimberley Flora (G.J. Keighery 4828) replace: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kennedy Range (J.S. Beard 4392) replace: Tephrosia sp. Kennedy Range (J.S.Beard 4392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kununurra (T. Handasyde TH00 250) replace: Tephrosia sp. Kununurra (T.Handesyde TH00 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Magazine Hill (P. Jones 365) replace: Tephrosia sp. Magazine Hill (P.Jones 365) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Mistake Creek (A.C. Beauglehole 54424) replace: Tephrosia sp. Mistake Creek (A.C.Beauglehole 54424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) + replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tephrosia sp. Newman (A.A. Mitchell PRP 29) replace: Tephrosia sp. Newman (A.A.Mitchell PRP 29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Northern (K.F. Kenneally 11950) replace: Tephrosia sp. Northern (K.F.Kenneally 11950) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) - replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Onslow (K.R. Newbey 10571) replace: Tephrosia sp. Onslow (K.R.Newbey 10571) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Pentecost River (I.D. Cowie 4168) replace: Tephrosia sp. Pentecost River (I.D.Cowie 4168) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Saw Ranges (D. Kabay s.n. PERTH 06720544) replace: Tephrosia sp. Saw Ranges (D.Kabay s.n. PERTH 06720544) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) - replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Willowra (G.M. Chippendale 4809) replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) + replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. deserts (J.R. Maconochie 1403) + replace: Tephrosia sp. deserts (J.R.Maconochie 1403) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) + replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tetratheca sp. Granite (S. Patrick SP1224) replace: Tetratheca sp. Granite (S.Patrick SP1224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Kent River (B.G. Hammersley 1791) replace: Tetratheca sp. Kent River (B.G.Hammersley 1791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Mt Solus (F. Obbens 307/98) replace: Tetratheca sp. Mt Solus (F.Obbens 307/98) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Balladonia (K.R. Newbey 7380) replace: Teucrium sp. Balladonia (K.R.Newbey 7380) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Teucrium sp. dwarf (R. Davis 8813) - replace: Teucrium sp. dwarf (R.Davis 8813) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Norseman (T.E.H. Aplin 1851) replace: Teucrium sp. Norseman (T.E.H.Aplin 1851) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Sturt Creek (A.A. Mitchell 5536) replace: Teucrium sp. Sturt Creek (A.A.Mitchell 5536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Teucrium sp. dwarf (R. Davis 8813) + replace: Teucrium sp. dwarf (R.Davis 8813) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Thelymitra sp. Brookton (A.S. George 11631) replace: Thelymitra sp. Brookton (A.S.George 11631) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Esperance (N.S. Lander 1080) replace: Thelymitra sp. Esperance (N.S.Lander 1080) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Slender Sun Orchid (A.R. Annels 2884) replace: Thelymitra sp. Slender Sun Orchid (A.R.Annels 2884) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Hamersley Station (M.E. Trudgen 11431) replace: Themeda sp. Hamersley Station (M.E.Trudgen 11431) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Mt Barricade (M.E. Trudgen 2471) replace: Themeda sp. Mt Barricade (M.E.Trudgen 2471) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Arthur River (H.F. & M. Broadbent 1409) replace: Thomasia sp. Arthur River (H.F. & M.Broadbent 1409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Big Brook (M. Koch 2373) replace: Thomasia sp. Big Brook (M.Koch 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Gingin (F. & J. Hort 1511) replace: Thomasia sp. Gingin (F. & J.Hort 1511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Green Hill (S. Paust 1322) replace: Thomasia sp. Green Hill (S.Paust 1322) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Lesueur (M. Hislop 4217) replace: Thomasia sp. Lesueur (M.Hislop 4217) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Merredin (M.B. Mills 11) replace: Thomasia sp. Merredin (M.B.Mills 11) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Salmon Gums (C.A. Gardner s.n. PERTH 02708639) replace: Thomasia sp. Salmon Gums (C.A.Gardner s.n. PERTH 02708639) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Toolbrunup (G.J. Keighery 9895) replace: Thomasia sp. Toolbrunup (G.J.Keighery 9895) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Vasse (C. Wilkins & K. Shepherd CW 581) replace: Thomasia sp. Vasse (C.Wilkins & K.Shepherd CW581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia xformosa replace: Thomasia x formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene glaucosa replace: Thryptomene glaucosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Carrarang (M.E. Trudgen 7420) replace: Thryptomene sp. Carrarang (M.E.Trudgen 7420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eagle Gorge (A.G. Gunness 2360) replace: Thryptomene sp. Eagle Gorge (A.G.Gunness 2360) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. East Yuna (J.W. Green 4639) replace: Thryptomene sp. East Yuna (J.W.Green 4639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eneabba (R.J. Cranfield 8433) replace: Thryptomene sp. Eneabba (R.J.Cranfield 8433) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eurardy (D. & B. Bellairs 1649) replace: Thryptomene sp. Eurardy (D. & B.Bellairs 1649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Geraldton (H. Demarz 5145) replace: Thryptomene sp. Geraldton (H.Demarz 5145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Lancelin (M.E. Trudgen 14000) replace: Thryptomene sp. Lancelin (M.E.Trudgen 14000) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Moresby Range (A.S. George 14873) replace: Thryptomene sp. Moresby Range (A.S.George 14873) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Steep Point (M.E. Trudgen 7421) replace: Thryptomene sp. Steep Point (M.E.Trudgen 7421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Tamala (M.E. Trudgen 7384) replace: Thryptomene sp. Tamala (M.E.Trudgen 7384) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Yuna Reserve (A.C. Burns 100) replace: Thryptomene sp. Yuna Reserve (A.C.Burns 100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Badgingarra (E.A. Griffin 2511) replace: Thysanotus sp. Badgingarra (E.A.Griffin 2511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Desert East of Newman (R.P. Hart 964) replace: Thysanotus sp. Desert East of Newman (R.P.Hart 964) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Eremaean (S. van Leeuwen 1067) replace: Thysanotus sp. Eremaean (S.van Leeuwen 1067) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Great Victoria Desert (A.S. George 8406) replace: Thysanotus sp. Great Victoria Desert (A.S.George 8406) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Kalbarri (D. & B. Bellairs 1523 A) replace: Thysanotus sp. Kalbarri (D. & B.Bellairs 1523 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Twining Wheatbelt (N.H. Brittan 81/29) replace: Thysanotus sp. Twining Wheatbelt (N.H.Brittan 81/29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema oxycalyptra var. oxycalyptra replace: Trianthema oxycalyptrum var. oxycalyptrum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tribonanthes sp. Lake Muir (G.J. Keighery & N. Gibson 2134) replace: Tribonanthes sp. Lake Muir (G.J.Keighery & N.Gibson 2134) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Koolan Island (K.F. Kenneally 8278) replace: Tribulopis sp. Koolan Island (K.F.Kenneally 8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Mitchell Plateau (K.F. Kenneally 7935) replace: Tribulopis sp. Mitchell Plateau (K.F.Kenneally 7935) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. long-styled eichlerianus (A.S. George 10666) replace: Tribulus sp. long-styled eichlerianus (A.S.George 10666) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium exile replace: Trichanthodium exilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichocline sp. Treeton (B.J. Keighery & N. Gibson 564) replace: Trichocline sp. Treeton (B.J.Keighery & N.Gibson 564) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Geraldton (G.J. Keighery 10461) replace: Tricoryne sp. Geraldton (G.J.Keighery 10461) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Kimberley (K.F. Kenneally 4857) replace: Tricoryne sp. Kimberley (K.F.Kenneally 4857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Morawa (G.J. Keighery & N. Gibson 6759) replace: Tricoryne sp. Morawa (G.J.Keighery & N.Gibson 6759) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Mullewa (G.J. Keighery 12080) replace: Tricoryne sp. Mullewa (G.J.Keighery 12080) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. South Coast (T.E.H. Aplin 2653) replace: Tricoryne sp. South Coast (T.E.H.Aplin 2653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Wongan Hills (B.H. Smith 794) replace: Tricoryne sp. Wongan Hills (B.H.Smith 794) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. A Flora of Australia (G.J. Keighery 2477) replace: Triglochin sp. A Flora of Australia (G.J.Keighery 2477) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. B Flora of Australia (P.G. Wilson 4294) replace: Triglochin sp. B Flora of Australia (P.G.Wilson 4294) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. C Flora of Australia (P.G. Wilson 8811) replace: Triglochin sp. C Flora of Australia (P.G.Wilson 8811) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Mt Ella (M.E. Trudgen 12739) replace: Triodia sp. Mt Ella (M.E.Trudgen 12739) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Adolphus Island (K.F. Kenneally 11898) replace: Triumfetta sp. Adolphus Island (KF.Kenneally 11898) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Mt Bomford (M.D. Barrett MDB 1001) replace: Triumfetta sp. Mt Bomford (M.D.Barrett MDB 1001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Kununurra (A.N. Start ANS 1467) replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Galena (G.J. Keighery 14733) replace: Urodon sp. Galena (G.L.Keighery 14733) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Narkal (B.H. Smith 1440) replace: Urodon sp. Narkal (B.H.Smith 1440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia serrata var. Udumung replace: Verticordia serrata var. Udumung (D.Hunter & B.Yarran 941006) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Verticordia xeurardyensis replace: Verticordia x eurardyensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. Hamersley Clay (A.A. Mitchell PRP 113) replace: Vigna sp. Hamersley Clay (A.A.Mitchell PRP 113) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. northern pubescent (A.A. Mitchell 3667) replace: Vigna sp. northern pubescent (A.A.Mitchell 3667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia sp. A Kimberley Flora (R.J. Cranfield 6527) replace: Vittadinia sp. A Kimberley Flora (R.J.Cranfield 6527) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia preissii de replace: Wahlenbergia preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia sp. Hamersley (A.S. Weston 8444) replace: Wedelia sp. Hamersley (A.S.Weston 8444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Cranbrook (A.R. Annels 3819) replace: Wurmbea sp. Cranbrook (A.R.Annels 3819) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Great Victoria Desert (G.J. Keighery 7501) replace: Wurmbea sp. Great Victoria Desert (G.J.Keighery 7501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosia sp. Dardanup (B.J. Keighery & N. Gibson 174) replace: Xanthosia sp. Dardanup (B.J.Keighery & N.Gibson 174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. West Kimberley (C.A. Gardner 9942) replace: Zornia sp. West Kimberley (C.A.Gardner 9942) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Axonopus affinis - replace: Axonopus fissifolius - reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Conostylis seorsiflora subsp. Nyabing - replace: Conostylis seorsiflora subsp. Nyabing (A.Coates s.n. 2/10/1998) - reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Freesia alba x leichtlinii - replace: Freesia alba x Freesia leichtlinii - reason: Manual alignment with accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Caulerpa scalpelliformis, Ecklonia radiata diff --git a/data/WAH_2023_2/metadata.yml b/data/WAH_2023_2/metadata.yml index 8c86902e9..e0259928c 100644 --- a/data/WAH_2023_2/metadata.yml +++ b/data/WAH_2023_2/metadata.yml @@ -56,7 +56,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% filter(!is.na(taxon_name)) %>% filter(str_detect(taxon_name, " ")) %>% @@ -465,296 +465,288 @@ taxonomic_updates: replace: Abutilon dioicum MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Cape Range (A.S. George 1312) replace: Abutilon sp. Cape Range (A.S.George 1312) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Dioicum (A.A. Mitchell PRP 1618) replace: Abutilon sp. Dioicum (A.A.Mitchell PRP 1618) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Hamelin (A.M. Ashby 2196) replace: Abutilon sp. Hamelin (A.M.Ashby 2196) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Onslow (F. Smith s.n. 10/9/61) replace: Abutilon sp. Onslow (F.Smith s.n. 10/09/1961) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Pilbara (W.R. Barker 2025) replace: Abutilon sp. Pilbara (W.R.Barker 2025) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Quobba (H. Demarz 3858) replace: Abutilon sp. Quobba (H.Demarz 3858) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Abutilon sp. Warburton (A.S. George 8164) replace: Abutilon sp. Warburton (A.S.George 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia drummondii subsp. elegans Porongurup variant replace: Acacia drummondii subsp. elegans Porongurup variant (R.J.Cumming 938) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia eremophila var. Numerous-nerved variant replace: Acacia eremophila var. Numerous-nerved variant (A.S.George 11924) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. bracteolata long peduncle variant replace: Acacia lasiocarpa var. bracteolata Long Peduncle variant (G.J.Keighery 5026) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant replace: Acacia lasiocarpa var. lasiocarpa Cockleshell Gully variant (E.A.Griffin 2039) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia lateriticola var. Glabrous variant replace: Acacia lateriticola var. Glabrous variant (B.R.Maslin 6765) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia leioderma var. Fitzgerald River N.P. variant replace: Acacia leioderma var. Fitzgerald River N.P. variant (A.S.George 9922) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia monticola x trachycarpa replace: Acacia monticola x Acacia trachycarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia mutabilis subsp. Young River replace: Acacia mutabilis subsp. Young River (G.F.Craig 2052) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia pulchella var. reflexa acuminate bracteole variant replace: Acacia pulchella var. reflexa Acuminate bracteole variant (R.J.Cumming 882) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia saligna subsp. saligna ms replace: Acacia saligna reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Barklys (J.L. Egan 124) replace: Acacia sp. Barklys (J.L.Egan 124) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Broome (B.R. Maslin 4918) replace: Acacia sp. Broome (B.R.Maslin 4918) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Bungalbin Hill (J.J. Alford 1119) replace: Acacia sp. Bungalbin Hill (J.J.Alford 1119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R.Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cadoux (B.R. Maslin 5786) replace: Acacia sp. Cadoux (B.R.Maslin 5786) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S.Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cape Arid (A.S. Weston 8164) replace: Acacia sp. Cape Arid (A.S.Weston 8164) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Carson River (M. McDonald MM1890) replace: Acacia sp. Carson River (M.McDonald MM1890) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Cockburn Range (R. Pullen 10.763) replace: Acacia sp. Cockburn Range (R.Pullen 10.763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Edgar Range (S.D. Hopper 1763) replace: Acacia sp. Edgar Range (S.D.Hopper 1763) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Esperance (M.A. Burgman 1833b) replace: Acacia sp. Esperance (M.A.Burgman 1833b) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. F Kimberley Flora (J.J. Alford 557) replace: Acacia sp. F Kimberley Flora (J.J.Alford 557) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Goodlands (B.R. Maslin 7761) replace: Acacia sp. Goodlands (B.R.Maslin 7761) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Jimblebar (S. van Leeuwen 1342) replace: Acacia sp. Jimblebar (S.van Leeuwen 1342) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7571) replace: Acacia sp. Kalannie (B.R.Maslin 7571) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie (B.R. Maslin 7706) replace: Acacia sp. Kalannie (B.R.Maslin 7706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North (B.R. Maslin 7702) replace: Acacia sp. Kalannie North (B.R.Maslin 7702) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kalannie North East (B.R. Maslin 7519) replace: Acacia sp. Kalannie North East (B.R.Maslin 7519) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kulin (S. Murray 504) replace: Acacia sp. Kulin (S.Murray 504) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Kununurra (Lullfitz 6195) replace: Acacia sp. Kununurra (G.Lullfitz 6195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Lake King (R. Hnatiuk 760791) replace: Acacia sp. Lake King (R.Hnatiuk 760791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Little Sandy Desert (A.S. Mitchell 591) replace: Acacia sp. Little Sandy Desert (A.S.Mitchell 591) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Manmanning (B.R. Maslin 7711) replace: Acacia sp. Manmanning (B.R.Maslin 7711) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Marble Bar (J.G. & M.H. Simmons 3499) replace: Acacia sp. Marble Bar (J.G. & M.H.Simmons 3499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Minnie Creek (B.R. Maslin 5217) replace: Acacia sp. Minnie Creek (B.R.Maslin 5217) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Moorine Rock (B.R. Maslin 4474) replace: Acacia sp. Moorine Rock (B.R.Maslin 4474) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Augustus (S.D. Hopper 3181) replace: Acacia sp. Mt Augustus (S.D.Hopper 3181) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mt Jackson (B. Ryan 176) replace: Acacia sp. Mt Jackson (B.Ryan 176) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Muggon Station (S. Patrick & D. Edinger SP 3235) replace: Acacia sp. Muggon Station (S.Patrick & D.Edinger SP3235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Mullewa (B.R. Maslin 4269) replace: Acacia sp. Mullewa (B.R.Maslin 4269) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) - replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. New Norcia (E.A. Griffin 5917) replace: Acacia sp. New Norcia (E.A.Griffin 5917) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Norseman (B. Archer 1554) replace: Acacia sp. Norseman (B.Archer 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Nullagine (B.R. Maslin 4955) replace: Acacia sp. Nullagine (B.R.Maslin 4955) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P174 (J.M. Brown 228) replace: Acacia sp. P174 (J.M.Brown 228) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P176 (B.R. Maslin 5831) replace: Acacia sp. P176 (B.R.Maslin 5831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P19 (A.A. Mitchell 231) replace: Acacia sp. P19 (A.A.Mitchell 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P69 (W.E. Blackall 3754) replace: Acacia sp. P69 (W.E.Blackall 3754) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. P94 (J.S. Beard 6178) replace: Acacia sp. P94 (J.S.Beard 6178) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Peak Hill (R. Gibson 0003) replace: Acacia sp. Peak Hill (R.Gibson 0003) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Petrudor Rocks (B.R. Maslin 7714) replace: Acacia sp. Petrudor Rocks (B.R.Maslin 7714) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe (R.S. Cowan & B.R. Maslin RSC A-760) replace: Acacia sp. Ravensthorpe (R.S.Cowan & B.R.Maslin RSC A-760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Ravensthorpe Range (B.R. Maslin 5463) replace: Acacia sp. Ravensthorpe Range (B.R.Maslin 5463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Riddell Beach (T. Willing 71) replace: Acacia sp. Riddell Beach (T.Willing 71) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Rudall River (B.R. Maslin 2237) replace: Acacia sp. Rudall River (B.R.Maslin 2237) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Shark Bay (B.R. Maslin 3682) replace: Acacia sp. Shark Bay (B.R.Maslin 3682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Acacia sp. small seed (B.R. Maslin 7830) - replace: Acacia sp. Small seed (B.R.Maslin 7830) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Trent River (K.F. Kenneally 11701) - replace: Acacia sp. Trent River (K.F.Kenneally 11701) + replace: Acacia sp. Trent River (K.F.Kenneally 11701) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Weld Range (A. Markey & S. Dillon 2994) replace: Acacia sp. Weld Range (A.Markey & S.Dillon 2994) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wiluna (B.R. Maslin 7090) replace: Acacia sp. Wiluna (B.R.Maslin 7090) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Windy Corner (P.K. Latz 17865) replace: Acacia sp. Windy Corner (P.K.Latz 17865) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Wongawol (I. Kealley IEK 015) replace: Acacia sp. [Acacia sp. Wongawol (I. Kealley IEK 015)] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -763,657 +755,675 @@ taxonomic_updates: - find: Acacia sp. Wren Creek Crossing (K.F. Kenneally 11853) replace: Acacia sp. Wren Creek Crossing (K.F.Kenneally 11853) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia sp. narrow phyllode (B.R. Maslin 7831) + replace: Acacia sp. Narrow phyllode (B.R.Maslin 7831) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Acacia sp. small seed (B.R. Maslin 7830) + replace: Acacia sp. Small seed (B.R.Maslin 7830) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia trachycarpa x tumida var. pilbarensis replace: Acacia trachycarpa x Acacia tumida var. pilbarensis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. A Kimberley Flora (C.R. Dunlop 5303) replace: Actinoschoenus sp. A Kimberley Flora (C.R.Dunlop 5303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. B Kimberley Flora (G.J. Keighery 2649) replace: Actinoschoenus sp. B Kimberley Flora (G.J.Keighery 2649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. C Kimberley Flora (P.G. Wilson s.n. 12/5/72) replace: Actinoschoenus sp. C Kimberley Flora (P.G.Wilson s.n. 12/5/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. D Kimberley Flora (K.F. Kenneally 4789) replace: Actinoschoenus sp. D Kimberley Flora (K.F.Kenneally 4789) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinoschoenus sp. E Kimberley Flora (C.R. Dunlop 5309) replace: Actinoschoenus sp. E Kimberley Flora (C.R.Dunlop 5309) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Comet Vale (A.V. Milewski AVM 1093) replace: Actinotus sp. Comet Vale (A.V.Milewski AVM1093) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus sp. Walpole (J.R. Wheeler 3786) replace: Actinotus sp. Walpole (J.R.Wheeler 3786) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos barbiger subsp. barbiger ms replace: Adenanthos barbiger reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos xcunninghamii replace: Adenanthos x cunninghamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adenanthos xpamela replace: Adenanthos x pamela reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera longipes replace: Alternanthera longipes reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angulata replace: Alyogyne angulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne angustiloba replace: Alyogyne angustiloba MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne coronopifolia replace: Alyogyne coronopifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne huegelii var. huegelii ms replace: Alyogyne huegelii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne purpurea replace: Alyogyne purpurea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne pyrrhophila replace: Alyogyne pyrrhophila MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Geraldton (R. Davis 3487) replace: Alyogyne sp. Geraldton (R.Davis 3487) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Great Victoria Desert (D.J. Edinger 6212) replace: Alyogyne sp. Great Victoria Desert (D.J.Edinger 6212) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hutt River (B.J. Lepschi & T.R. Lally 2310) replace: Alyogyne sp. Hutt River (B.J.Lepschi & T.R.Lally 2310) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S. Durell GD 127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Hyden (G.S.Durrell GD127) replace: Alyogyne sp. Hyden (G.S.Durell GD127) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne sp. Rockingham (G.J. Keighery 14463) replace: Alyogyne sp. Rockingham (G.J.Keighery 14463) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne wrayae replace: Alyogyne wrayae MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amaranthus sp. A Kimberley Flora (C.A. Gardner s.n. PERTH 00326518) replace: Amaranthus sp. A Kimberley Flora (C.A.Gardner s.n. PERTH 00326518) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp. Fortescue (M.E. Trudgen 5358) replace: Amyema sp. Fortescue (M.E.Trudgen 5358) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anacampseros sp. Eremaean (F. Hort, J. Hort & J. Shanks 3248) replace: Anacampseros sp. Eremaean (F.Hort, J.Hort & J.Shanks 3248) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia caerulea subsp. caerulea replace: Andersonia caerulea var. caerulea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Andersonia fallax replace: Andersonia fallax MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia jamesii replace: Andersonia jamesii MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Frankland (W. Jackson BJ8) replace: Andersonia sp. Frankland (W.Jackson BJ8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Lower King (N. Hoyle 1500) replace: Andersonia sp. Lower King (N.Hoyle 1500) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Mitchell River (B.G. Hammersley 925) replace: Andersonia sp. Mitchell River (B.G.Hammersley 925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthos humilis subsp. Badgingarra replace: Anigozanthos humilis subsp. Badgingarra (S.D.Hopper 7114) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anigozanthos manglesii var. xangustifolius replace: Anigozanthos manglesii var. x angustifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Anigozanthos viridis subsp. Cataby replace: Anigozanthos viridis subsp. Cataby (S.D.Hopper 1786) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anthocercis sp. Shark Bay (T.E.H. Aplin 3335) replace: Anthocercis sp. Shark Bay (T.E.H.Aplin 3335) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Darling Range (F. Hort & B. Hort 2431) replace: Anthotium sp. Darling Range (F.Hort & B.Hort 2431) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Peaceful Bay (J.R. Wheeler 3772 & S.J. Patrick) replace: Anthotium sp. Peaceful Bay (J.R.Wheeler 3772 & S.J.Patrick) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Cunderdin (B.J. Lepschi et al. 3587) replace: Aotus sp. Cunderdin (B.J.Lepschi et al. 3587) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Dundas (M.A. Burgman 2835) replace: Aotus sp. Dundas (M.A.Burgman 2835) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Apium prostratum subsp. prostratum var. filiforme replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum subsp. prostratum var. prostratum replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Asparagopsis taxiformis replace: Asparagopsis sp. [Asparagopsis taxiformis; WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI (2022-11-22) taxonomic_resolution: genus -- find: Astartea sp. big bracteoles (A.R. Annels 995) - replace: Astartea sp. big bracteoles (A.R.Annels 995) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species - find: Astartea sp. Bungalbin Hill (K.R. Newbey 8989) replace: Astartea sp. Bungalbin Hill (K.R.Newbey 8989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Esperance (A. Fairall 2431) replace: Astartea sp. Esperance (A.Fairall 2431) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Fitzgerald (K.R. Newbey 10844) replace: Astartea sp. Fitzgerald (K.R.Newbey 10844) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Gingalup (N. Gibson & M. Lyons 119) replace: Astartea sp. Gingalup (N.Gibson & M.Lyons 119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Hopetoun area (A.S. George 10594) replace: Astartea sp. Hopetoun area (A.S.George 10594) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jerdacuttup (A. Strid 21898) replace: Astartea sp. Jerdacuttup (A.Strid 21898) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Jyndabinbin Rocks (K.R. Newbey 7689) replace: Astartea sp. Jyndabinbin Rocks (K.R.Newbey 7689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astartea sp. long stalks (D. Foreman 1490) - replace: Astartea sp. long stalks (D.Foreman 1490) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Dimer (C. McChesney TRL4/72) replace: Astartea sp. Mt Dimer (C.McChesney TRL4/72) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Mt Johnston (A.R. Annels 5645) replace: Astartea sp. Mt Johnston (A.R.Annels 5645) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Red Hill (K.R. Newbey 8462) replace: Astartea sp. Red Hill (K.R.Newbey 8462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Scott River (D. Backshall 88233) replace: Astartea sp. Scott River (D.Backshall 88233) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astartea sp. big bracteoles (A.R. Annels 995) + replace: Astartea sp. big bracteoles (A.R.Annels 995) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Astartea sp. long stalks (D. Foreman 1490) + replace: Astartea sp. long stalks (D.Foreman 1490) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Asterolasia sp. Kalgan River (S. Barrett 1522) replace: Asterolasia sp. Kalgan River (S.Barrett 1522) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Cataby (E.A. Griffin 1022) replace: Astroloma sp. Cataby (E.A.Griffin 1022) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Grass Patch (A.J.G. Wilson 110) replace: Astroloma sp. Grass Patch (A.J.G.Wilson 110) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Nannup (R.D. Royce 3978) replace: Astroloma sp. Nannup (R.D.Royce 3978) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Astroloma sp. sessile leaf (J.L. Robson 657) - replace: Astroloma sp. sessile leaf (J.L.Robson 657) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Tutanning (A.S. George 7779) replace: Astroloma sp. Tutanning (A.S.George 7779) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astroloma sp. sessile leaf (J.L. Robson 657) + replace: Astroloma sp. sessile leaf (J.L.Robson 657) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Atriplex sp. De Grey (A.A. Mitchell PRP1940) replace: Atriplex sp. De Grey (A.A.Mitchell PRP1940) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos errabundus var. errabundus replace: Austrodolichos errabundus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos erubescens replace: Austrodolichos erubescens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea crispiflora subsp. Corrigin replace: Baeckea crispiflora subsp. Corrigin (A.S.George 14431) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Kulin replace: Baeckea crispiflora subsp. Kulin (R.Hnatiuk 780026) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Ongerup replace: Baeckea crispiflora subsp. Ongerup (A.Scougall & C.Garawanta E35) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea sp. Baladjie (P.J. Spencer 24) replace: Baeckea sp. Baladjie (P.J.Spencer 24) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bencubbin-Koorda (M.E. Trudgen 5421) replace: Baeckea sp. Bencubbin-Koorda (M.E.Trudgen 5421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Beringbooding (A.R. Main 11/9/1957) replace: Baeckea sp. Beringbooding (A.R.Main 11/9/1957) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Billeranga Hills (M.E. Trudgen 2206) replace: Baeckea sp. Billeranga Hills (M.E.Trudgen 2206) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bulla Bulling (D.J.E. Whibley 4648) replace: Baeckea sp. Bulla Bulling (D.J.E.Whibley 4648) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bungalbin Hill (B.J. Lepschi & L.A. Craven 4586) replace: Baeckea sp. Bungalbin Hill (B.J.Lepschi & L.A.Craven 4586) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunjil (B.R. Maslin 5067) replace: Baeckea sp. Bunjil (B.R.Maslin 5067) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Bunney Road (S. Patrick 4059) replace: Baeckea sp. Bunney Road (S.Patrick 4059) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Calingiri (F. Hort 1710) replace: Baeckea sp. Calingiri (F.Hort 1710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Chittering (R.J. Cranfield 1983) replace: Baeckea sp. Chittering (R.J.Cranfield 1983) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Darling Range (R.J. Cranfield 1673) replace: Baeckea sp. Darling Range (R.J.Cranfield 1673) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Die Hardy Range (E. Mattiske J91) replace: Baeckea sp. Die Hardy Range (E.Mattiske J91) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. East Yuna (R. Spjut & C. Edson 7077) replace: Baeckea sp. East Yuna (R.Spjut & C.Edson 7077) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Elsewhere Road (M.E. Trudgen 5420) replace: Baeckea sp. Elsewhere Road (M.E.Trudgen 5420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Eujinyn (J. Buegge D 99) replace: Baeckea sp. Eujinyn (J.Buegge D99) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Exclamation Lake (M.E. Trudgen 1524) replace: Baeckea sp. Exclamation Lake (M.E.Trudgen 1524) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Forrestania (K.R. Newbey 1105) replace: Baeckea sp. Forrestania (K.R.Newbey 1105) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Gibson (K.R. Newbey 11084) replace: Baeckea sp. Gibson (K.R.Newbey 11084) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Great Victoria Desert (A.S. Weston 14813) replace: Baeckea sp. Great Victoria Desert (A.S.Weston 14813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hatter Hill (K.R. Newbey 3284) replace: Baeckea sp. Hatter Hill (K.R.Newbey 3284) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena & Aurora Range (G.J.Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Helena and Aurora Range (G.J. Keighery 4424) replace: Baeckea sp. Helena and Aurora Range (G.J.Keighery 4424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Hyden (J.M. Brown 141) replace: Baeckea sp. Hyden (J.M.Brown 141) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Jaurdi Station (L.W. Sage & F. Hort 2229) replace: Baeckea sp. Jaurdi Station (L.W.Sage & F.Hort 2229) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Koorda (W.E. Blackall 3371) replace: Baeckea sp. Koorda (W.E.Blackall 3371) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Lake Cronin (K.R. Newbey 9191) replace: Baeckea sp. Lake Cronin (K.R.Newbey 9191) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. London Bridge (M.E. Trudgen 5393) replace: Baeckea sp. London Bridge (M.E.Trudgen 5393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Melita Station (H. Pringle 2738) replace: Baeckea sp. Melita Station (H.Pringle 2738) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Merredin (K.R. Newbey 2506) replace: Baeckea sp. Merredin (K.R.Newbey 2506) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mingenew (M.E. Trudgen 12029) replace: Baeckea sp. Mingenew (M.E.Trudgen 12029) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Moora (R. Bone 1993/1) replace: Baeckea sp. Moora (R.Bone 1993/1) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Morawa (M.A. Langley MAL4177) replace: Baeckea sp. Morawa (M.A.Langley MAL4177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mount Barloweerie (J.Z. Weber 5079) replace: Baeckea sp. Mount Barloweerie (J.Z.Weber 5079) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Mt Glasse (P.G. Wilson 5717) replace: Baeckea sp. Mt Glasse (P.G.Wilson 5717) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Muntadgin (E.T. Bailey 231) replace: Baeckea sp. Muntadgin (E.T.Bailey 231) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Murchison River (M.E. Trudgen 12009) replace: Baeckea sp. Murchison River (M.E.Trudgen 12009) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nanga (A.S. George 11346) replace: Baeckea sp. Nanga (A.S.George 11346) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narembeen (G.J. Keighery & N. Gibson 3010) replace: Baeckea sp. Narembeen (G.J.Keighery & N.Gibson 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Narrogin (R. Hnatiuk 780011) replace: Baeckea sp. Narrogin (R.Hnatiuk 780011) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Nolba (M.E. Trudgen MET21632) replace: Baeckea sp. Nolba (M.E.Trudgen MET21632) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. North Ironcap (R.J. Cranfield 10580) replace: Baeckea sp. North Ironcap (R.J.Cranfield 10580) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Parker Range (M. Hislop & F. Hort MH 2968) replace: Baeckea sp. Parker Range (M.Hislop & F.Hort MH 2968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Paynes Find (S. Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Payne's Find (S.Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baeckea sp. Payne's Find (S.Patrick 1095) + taxonomic_resolution: species +- find: Baeckea sp. Paynes Find (S. Patrick 1095) replace: Baeckea sp. Paynes Find (S.Patrick 1095) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perenjori (J.W. Green 1516) replace: Baeckea sp. Perenjori (J.W.Green 1516) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Perth Region (R.J. Cranfield 444) replace: Baeckea sp. Perth Region (R.J.Cranfield 444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Pigeon Rocks (D. Grace DJP 281) replace: Baeckea sp. Pigeon Rocks (D.Grace DJP 281) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A. Gardner s.n. 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sandstone (C.A.Gardner s.n., 26 Oct. 1963) replace: Baeckea sp. Sandstone (C.A.Gardner s.n. 26 Oct. 1963) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Sheoaks Rocks (M.E. Trudgen MET5452) replace: Baeckea sp. Sheoaks Rocks (M.E.Trudgen MET5452) reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Stockton Road (M.E. Trudgen MET22077 & B. Rye) replace: Baeckea sp. Stockton Road (M.E.Trudgen MET22077 & B.Rye) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Tammin (R. Coveny 8319 & B. Habberley) replace: Baeckea sp. Tammin (R.Coveny 8319 & B.Habberley) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Three Springs (M.E. Trudgen 5368) replace: Baeckea sp. Three Springs (M.E.Trudgen 5368) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Walkaway (A.S. George 11249) replace: Baeckea sp. Walkaway (A.S.George 11249) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Western Australia (J. Drummond s.n.) replace: Baeckea sp. Western Australia (J.Drummond s.n.) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Whelarra (A.C. Burns 7) replace: Baeckea sp. Whelarra (A.C.Burns 7) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wialki (G.M. Storr s.n. 4/10/1958) replace: Baeckea sp. Wiakli (G.M.Storr s.n. 4/10/1958) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Wubin (M.E. Trudgen 5404) replace: Baeckea sp. Wubin (M.E.Trudgen 5404) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yacke Yackine Dam (K.R. Newbey 9195) replace: Baeckea sp. Yacke Yackine Dam (K.R.Newbey 9195) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Youndegin Hill (A.S. George 15772) replace: Baeckea sp. Youndegin Hill (A.S.George 15772) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea sp. Yuna (M.E. Trudgen 2224) replace: Baeckea sp. Yuna (M.E.Trudgen 2224) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia dallanneyi subsp. dallanneyi var. dallanneyi replace: Banksia dallanneyi subsp. dallanneyi reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia dallanneyi subsp. dallanneyi var. mellicula replace: Banksia dallanneyi var. mellicula reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Banksia nivea subsp. Morangup replace: Banksia nivea subsp. Morangup (M.Pieroni 9/42) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia sp. Boyup Brook (L.W. Sage LWS 2366) replace: Banksia sp. Boyup Brook (L.W.Sage LWS 2366) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea preissii subsp. laxa replace: Baumea preissii subsp. laxa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Baumea preissii subsp. preissii + replace: Baumea preissii + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Baumea preissii subsp. preissii ms replace: Baumea preissii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beaufortia sp. column (J.S. Beard 8119) replace: Beaufortia sp. Column (J.S.Beard 8119) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. A Ravensthorpe (A.S. George 9474) replace: Beyeria sp. A Ravensthorpe (A.S.George 9474) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Bandalup Hill (G. Cockerton 7553) replace: Beyeria sp. Bandalup Hill (G.Cockerton 7553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Jackson Range (R. Cranfield & P. Spencer 7751) replace: Beyeria sp. Jackson Range (R.Cranfield & P.Spencer 7751) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria sp. Murchison (B. Jeanes s.n. 7/7/2005) replace: Beyeria sp. Murchison (B.Jeanes s.n. 7/7/2005) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Boronia crenulata subsp. crenulata var. angustifolia - replace: Boronia crenulata var. angustifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species +- find: Boronia crenulata 'Shark Bay' + replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: subspecies - find: Boronia crenulata subsp. Shark Bay replace: Boronia crenulata 'Shark Bay' reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Boronia crenulata subsp. crenulata var. angustifolia + replace: Boronia crenulata var. angustifolia + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) + taxonomic_resolution: varietas - find: Boronia sp. Leeuwin (J. Scott 235) replace: Boronia sp. Leeuwin (J.Scott 235) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp. Location 4264 (R. Turner s.n.) replace: Boronia sp. Location 4264 (R.Turner s.n., 23 Sept. 1999) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Borya sp. Wheatbelt (A.S. George 16470) replace: Borya sp. Wheatbelt (A.S.George 16470) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Bremer (K. Newbey 2980) replace: Bossiaea sp. Bremer (K.Newbey 2980) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Frankland (E.M. Sandiford EMS 896) replace: Bossiaea sp. Frankland (E.M.Sandiford EMS 896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Jackson Range (G. Cockerton & S. McNee LCS 13614) replace: Bossiaea sp. Jackson Range (G.Cockerton & S.McNee LCS 13614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea sp. Waroona (B.J. Keighery & N. Gibson 229) replace: Bossiaea sp. Waroona (B.J.Keighery & N.Gibson 229) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xjuncea replace: Brassica x juncea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brassica xnapus replace: Brassica x napus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Goldfields (K.R. Newbey 6044) replace: Brunonia sp. Goldfields Goldfields (K.R. Newbey 6044) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Long hairs (D.E. Symon 2440) replace: Brunonia sp. Long Hairs (D.E.Symon 2440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunoniella acaulis var. acaulis replace: Brunoniella acaulis subsp. acaulis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Caesia sp. Koolanooka Hills (R. Meissner & Y. Caruso 78) replace: Caesia sp. [Caesia sp. Koolanooka Hills (R. Meissner & Y. Caruso 78); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1427,261 +1437,261 @@ taxonomic_updates: - find: Caesia sp. Wongan (K.F. Kenneally 8820) replace: Caesia sp. Wongan (K.F.Kenneally 8820) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Muddarning Hill (S.D. Hopper 4013) replace: Caladenia sp. Muddarning Hill (S.D.Hopper 4013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. Wyalkatchem (G.B. Brockman GBB 661) replace: Caladenia sp. Wyalkatchem (G.B.Brockman GBB 661) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xaestantha replace: Caladenia x aestantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcala replace: Caladenia x cala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xcoactescens replace: Caladenia x coactescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xeludens replace: Caladenia x eludens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xenigma replace: Caladenia x enigma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xericksoniae replace: Caladenia x ericksoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xerminea replace: Caladenia x erminea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexoleta replace: Caladenia x exoleta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xexserta replace: Caladenia x exserta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xhypata replace: Caladenia x hypata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xidiastes replace: Caladenia x idiastes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xlavandulacea replace: Caladenia x lavandulacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xornata replace: Caladenia x ornata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xresupina replace: Caladenia x resupina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xspectabilis replace: Caladenia x spectabilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xsuffusa replace: Caladenia x suffusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtriangularis replace: Caladenia x triangularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia xtryphera replace: Caladenia x tryphera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Bungalbin (G.J. Keighery & N. Gibson 1656) replace: Calandrinia sp. Bungalbin (G.J.Keighery & N.Gibson 1656) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Coolcalalaya (G.J. Keighery & N. Gibson 698) replace: Calandrinia sp. Coolcalalaya (G.J.Keighery & N.Gibson 698) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Kenwick (G.J. Keighery 10905) replace: Calandrinia sp. Kenwick (G.J.Keighery 10905) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Needilup (K.R. Newbey 4892) replace: Calandrinia sp. Needilup (K.R.Newbey 4892) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Ongerup (K.R. Newbey 11834) replace: Calandrinia sp. Ongerup (K.R.Newbey 11834) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. Piawaning (A.C. Beauglehole 12257) replace: Calandrinia sp. Piawaning (A.C.Beauglehole 12257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia sp. The Pink Hills (F. Obbens FO 19/06) replace: Calandrinia sp. The Pink Hills (F.Obbens FO 19/06) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calectasia grandiflora subsp. Wheatbelt + replace: Calectasia grandiflora (Wheatbelt variant) + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Calectasia grandiflora subsp. grandiflora ms replace: Calectasia grandiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. southern replace: Calectasia grandiflora subsp. southern (H.Demarz 546) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies -- find: Calectasia grandiflora subsp. Wheatbelt - replace: Calectasia grandiflora (Wheatbelt variant) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: subspecies - find: Calectasia sp. Pinjar (C. Tauss 557) replace: Calectasia sp. Pinjar (C.Tauss 557) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callistachys sp. south-coast variant (M. Carter 180) replace: Callistachys sp. south-coast variant (M.Carter 180) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Pilbara-Desert (M.E. Trudgen 11454) replace: Calocephalus sp. Pilbara-Desert (M.E.Trudgen 11454) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calocephalus sp. Wittenoom (A.S. George 1082) replace: Calocephalus sp. Wittenoom (A.S.George 1082) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Hopetoun (H. Taylor s.n.) replace: Calochilus sp. Hopetoun (H.Taylor s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. South-west swamps (B.G. Hammersley 1010) replace: Calochilus sp. South-west swamps (B.G.Hammersley 1010) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Wandoo Beard Orchid (D.M. Rose 344) replace: Calochilus sp. Wandoo Beard Orchid (D.M.Rose 344) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Mt Lindesay (B.G. Hammersley 439) replace: Calothamnus sp. Mt Lindesay (B.G.Hammersley 439) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Scott River (R.D. Royce 84) replace: Calothamnus sp. Scott River (R.D.Royce 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Whicher (B.J. Keighery & N. Gibson 230) replace: Calothamnus sp. Whicher (B.J.Keighery & N.Gibson 230) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. acutifolia replace: Calytrix acutifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix acutifolia subsp. brevifolia replace: Calytrix acutifolia subsp. brevifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calytrix sp. Dragon Rocks (K. Kershaw & L. Kerrigan KK 2180) replace: Calytrix sp. Dragon Rocks (K.Kershaw & L.Kerrigan KK 2180) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Eneabba (B.J. Lepschi & T.R. Lally BJL3617) replace: Calytrix sp. Eneabba (B.J.Lepschi & T.R.Lally BJL3617) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Esperance (M.A. Burgman 4268A) replace: Calytrix sp. Esperance (M.A.Burgman 4268A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Jingaring (F. Obbens, R. Davis & L.W. Sage LWS1332) replace: Calytrix sp. Jingaring (F.Obbens, R.Davis & L.W.Sage LWS1332) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Scarp (H. Bowler 270) replace: Calytrix sp. Scarp (H.Bowler 270) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Tutunup (G.J. Keighery & N. Gibson 2953) replace: Calytrix sp. Tutunup (G.J.Keighery & N.Gibson 2953) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix sp. Wheatbelt (R. Davis 4544) replace: Calytrix sp. Wheatbelt (R.Davis 4544) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xgeneralis replace: Canna x generalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Canna xorchiodes replace: Canna x orchiodes reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine sp. Jandakot (P. Luff s.n. 4/7/1969) replace: Cardamine sp. Jandakot (P.Luff s.n. 4/7/1969) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carpobrotus sp. Thevenard Island (M. White 050) replace: Carpobrotus sp. Thevenard Island (M.White 050) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. A Kimberley Flora (S.J. Forbes 2163) replace: Cartonema sp. A Kimberley Flora (S.J.Forbes 2163) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cartonema sp. B Kimberley Flora (D.J. Edinger 336) replace: Cartonema sp. B Kimberley Flora (D.J.Edinger 336) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caustis sp. Boyanup (G.S. McCutcheon 1706) replace: Caustis sp. Boyanup (G.S.McCutcheon 1706) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium drummondii subsp. drummondii ms replace: Chamelaucium drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium forrestii subsp. forrestii ms replace: Chamelaucium forrestii MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. pauciflorum ms replace: Chamelaucium pauciflorum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. thryptomenioides replace: Chamelaucium pauciflorum subsp. thryptomenoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chamelaucium sp. Yalgoo (Y. Chadwick 1816) replace: Chamelaucium sp. Yalgoo (Y.Chadwick 1816) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysopogon sp. Zuytdorp (G.J. Keighery & N. Gibson 906) replace: Chrysopogon sp. Zuytdorp (G.J.Keighery & N.Gibson 906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codium duthieae replace: Codium sp. [Codium duthieae; WAH_2022_2] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1690,402 +1700,402 @@ taxonomic_updates: - find: Comesperma sp. A Kimberley Flora (K.F. Kenneally 9242) replace: Comesperma sp. A Kimberley Flora (K.F.Kenneally 9242) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia adenothalia replace: Commersonia adenothalia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia bivillosa replace: Commersonia bivillosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Bindoon (C. Wilkins & F. & J. Hort CW 2155) replace: Commersonia sp. Bindoon (C.Wilkins & F. & J.Hort CW 2155) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Commersonia sp. Mt Groper (R. Cranfield & D. Kabay 9157) replace: Commersonia sp. Mount Groper (R.Cranfield & D.Kabay 9157) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis candicans var. xleptophylla replace: Conostylis candicans var. x leptophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Conostylis seorsiflora subsp. Nyabing replace: Conostylis seorsiflora subsp. Nyabing (A.Coates s.n. 2/10/1998) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corchorus sp. Fitzroy Crossing (A.J. Ewart s.n. PERTH 01526790) replace: Corchorus sp. Fitzroy Crossing (A.J.Ewart s.n. PERTH 01526790) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Hamersley Range (S. van Leeuwen 3586) replace: Corchorus sp. Hamersley Range (S.van Leeuwen 3586) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corchorus sp. Yarrie (J. Bull & D. Roberts CAL 01.05) - replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) + replace: Corchorus sp. Yarrie (J.Bull & D.Roberts CAL 01.05) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia candida subsp. xlautifolia replace: Corymbia candida subsp. x lautifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Corymbia xopacula replace: Corymbia x opacula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia xpedimontana replace: Corymbia x pedimontana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia arenicola replace: Craspedia arenicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia argillicola replace: Craspedia argillicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria sp. Chichester Tablelands (A.A. Mitchell PRP226) replace: Crotalaria sp. Chichester Tablelands (A.A.Mitchell PRP226) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria spectabilis subsp. spectabilis replace: Crotalaria spectabilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cucumis sp. Bunbury (G. Brayshaw s.n. 26/2/91) replace: Cucumis sp. Bunbury (G.Brayshaw s.n. 26/2/91) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Dowak (J.M. Fox 86/271) replace: Cyathostemon sp. Dowak (J.M.Fox 86/271) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Lake King (M.E. & M.E. Trudgen 1462) replace: Cyathostemon sp. Lake King (M.E. & M.E.Trudgen 1462) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyathostemon sp. Salmon Gums (B. Archer 769) replace: Cyathostemon sp. Salmon Gums (B.Archer 769) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cynanchum sp. Hamersley (M. Trudgen 2302) replace: Cynanchum sp. Hamersley (M.Trudgen 2302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Dampiera angulata subsp. angulata - replace: Dampiera angulata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera angulata subsp. Peak Charles replace: Dampiera angulata subsp. Peak Charles (K.R.Newbey 5402) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Dampiera angulata subsp. angulata + replace: Dampiera angulata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Dampiera diversifolia de replace: Dampiera diversifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera eriocephala de replace: Dampiera eriocephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de replace: Dampiera haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera haematotricha de subsp. haematotricha replace: Dampiera haematotricha subsp. haematotricha reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dampiera lindleyi de replace: Dampiera lindleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Central Wheatbelt (L.W. Sage, F. Hort, C.A. Hollister LWS 2321) replace: Dampiera sp. Central Wheatbelt (L.W.Sage, F.Hort, C.A.Hollister LWS2321) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Jurien (G. Lullfitz s.n. 10/7/1986) replace: Dampiera sp. Jurien (G.Lullfitz s.n. 10/7/1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera sp. Wongan Hills (R.D. Royce 6637) replace: Dampiera sp. Wongan Hills (R.D.Royce 6637) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera trigona de replace: Dampiera trigona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Carnamah (J. Coleby-Williams 148) replace: Darwinia sp. Carnamah (J.Coleby-Williams 148) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Chiddarcooping (S.D. Hopper 6944) replace: Darwinia sp. Chiddarcooping (S.D.Hopper 6944) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Dryandra (G.J. Keighery 9295) replace: Darwinia sp. Dryandra (G.J.Keighery 9295) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Gibson (R.D. Royce 3569) replace: Darwinia sp. Gibson (R.D.Royce 3569) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Morawa (C.A. Gardner 2662) replace: Darwinia sp. Morawa (C.A.Gardner 2662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Baring (K.R. Newbey 9775) replace: Darwinia sp. Mt Baring (K.R.Newbey 9775) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Burdett (N.G. Marchant 80/42) replace: Darwinia sp. Mt Burdett (N.G.Marchant 80/42) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ney (M.A. Burgman & S. McNee 1274) replace: Darwinia sp. Mt Ney (M.A.Burgman & S.McNee 1274) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Ragged (S. Barrett 663) replace: Darwinia sp. Mt Ragged (S.Barrett 663) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Mt Success (G.J. Keighery 2299) replace: Darwinia sp. Mt Success (G.J.Keighery 2299) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Peak Charles (A.S. George 10627) replace: Darwinia sp. Peak Charles (A.S.George 10627) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Ravensthorpe (G.J. Keighery 8030) replace: Darwinia sp. Ravensthorpe (G.J.Keighery 8030) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Stirling Range (G.J. Keighery 5732) replace: Darwinia sp. (Stirling Range) G.J.Keighery 5732 reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Thumb Peak (K.R. Newbey 4847) replace: Darwinia sp. Thumb Peak (K.R.Newbey 4847) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Westdale (F. Hort 864) replace: Darwinia sp. Westdale (F.Hort 864) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson (G.J. Keighery 12717) replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Wyalgima Hill (L.W. Sage, J.P. Pigott & E.B. Pigott LWS1549) replace: Darwinia sp. Wyalgima Hill (L.W.Sage, J.P.Pigott & E.B.Pigott LWS1549) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia thymoides subsp. bella replace: Darwinia thymoides subsp. bella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Darwinia thymoides subsp. thymoides replace: Darwinia thymoides var. thymoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Daviesia euryloba replace: Daviesia eurylobos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. A Kimberley Flora (K.F. Kenneally 8686) replace: Dicarpidium sp. A Kimberley Flora (K.F.Kenneally 8686) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. B Kimberley Flora (G.J. Keighery 10138) replace: Dicarpidium sp. B Kimberley Flora (G.J.Keighery 10138) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicarpidium sp. Mt Leake (T. Willing 469) replace: Dicarpidium sp. Mt Leake (T.Willing 469) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Cue (A.A. Mitchell 764) replace: Dicrastylis sp. Cue (A.A.Mitchell 764) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Denham (M. Lewis 42/92) replace: Dicrastylis sp. Denham (M.Lewis 42/92) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dicrastylis sp. Peron Peninsula (M.E. Trudgen 7373) replace: Dicrastylis sp. Peron Peninsula (M.E.Trudgen 7373) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Digitaria sp. Carson River (A.A. Mitchell 4387) replace: Digitaria sp. Carson River (A.A.Mitchell 4387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Capel (P.A. Jurjevich 1771) replace: Dillwynia sp. Capel (P.A.Jurjevich 1771) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coolgardie (V.E. Sands 637.3.1) replace: Dillwynia sp. Coolgardie (V.E.Sands 637.3.1) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Coujinup Hill (M.A. Burgman 1560) replace: Dillwynia sp. Coujinup Hill (M.A.Burgman 1560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. Northern Sandplains (M. Hislop 3278) replace: Dillwynia sp. Northern Sandplains (M.Hislop 3278) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Arrowsmith (K.W. Dixon 924) replace: Diuris sp. Arrowsmith (K.W.Dixon 924) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris sp. Eneabba (A.H. Burbidge 3941) replace: Diuris sp. Eneabba (A.H.Burbidge 3941) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xbadgerupii replace: Drosera x badgerupii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera xsidjamesii replace: Drosera x sidjamesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita rubroviridis replace: Drummondita rubriviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drummondita sp. Trayning (A.M. George 97) replace: Drummondita sp. Trayning (A.M.George 97) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echinochloa crusgalli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ecklonia radiata replace: Ecklonia radiata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. A Kimberley Flora (W.V. Fitzgerald 1038) replace: Eleocharis sp. A Kimberley Flora (W.V.Fitzgerald 1038) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eleocharis sp. B Kimberley Flora (K.F. Kenneally 8727) replace: Eleocharis sp. B Kimberley Flora (K.F.Kenneally 8272) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elythranthera xintermedia replace: Elythranthera x intermedia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enekbatus roseus replace: Enekbatus roseus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis sp. Mt Robinson (S. van Leeuwen 4109) replace: Eragrostis sp. Mt Robinson (S.van Leeuwen 4109) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea violacea subsp. Dobaderry Swamp replace: Eremaea violacea subsp. Dobaderry Swamp (M.E.Trudgen 3909) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea violacea var. violacea replace: Eremaea violacea subsp. violacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eremaea xcodonocarpa replace: Eremaea x codonocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremaea xphoenicea replace: Eremaea x phoenicea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Eremophila sp. long pedicels (G. Cockerton 1975) - replace: Eremophila sp. long pedicels (G.Cockerton 1975) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eremophila sp. Mt Jackson (G.J. Keighery 4372) replace: Eremophila sp. Mt Jackson (G.J.Keighery 4372) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremophila sp. long pedicels (G. Cockerton 1975) + replace: Eremophila sp. long pedicels (G.Cockerton 1975) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Eriachne armitii replace: Eriachne armittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. C Kimberley Flora (G.J. Keighery 4610) replace: Eriocaulon sp. C Kimberley Flora (G.J.Keighery 4610) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. E Kimberley Flora (A.S. George 12635) replace: Eriocaulon sp. E Kimberley Flora (A.S.George 12635) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriocaulon sp. G Kimberley Flora (K.F. Kenneally 11374E) replace: Eriocaulon sp. G Kimberley Flora (K.F.Kenneally 11374E) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium ferox replace: Eryngium ferox MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. minus replace: Eryngium pinnatifidum subsp. minus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium pinnatifidum subsp. pinnatifidum ms replace: Eryngium pinnatifidum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium pinnatifidum subsp. umbraphilum replace: Eryngium pinnatifidum subsp. umbraphilum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eryngium sp. Lake Muir (E. Wittwer 2293) replace: Eryngium sp. Lake Muir (E.Wittwer 2293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrina xsykesii replace: Erythrina x sykesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus absita x loxophleba replace: Eucalyptus absita x Eucalyptus loxophleba reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus aspersa x Eucalyptus falcata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus aspersa x falcata replace: Eucalyptus x [Eucalyptus aspersa x falcata; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2095,27 +2105,27 @@ taxonomic_updates: replace: Eucalyptus x balanopelex reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus buprestium x Eucalyptus erectifolia reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x ligulata replace: Eucalyptus buprestium x Eucalyptus ligulata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus buprestium x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x erectifolia replace: Eucalyptus x [Eucalyptus buprestium x erectifolia; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2129,7 +2139,7 @@ taxonomic_updates: - find: Eucalyptus buprestium x marginata replace: Eucalyptus buprestium x Eucalyptus marginata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus buprestium x staeri replace: Eucalyptus x [Eucalyptus buprestium x staeri; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2139,26 +2149,26 @@ taxonomic_updates: replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dielsii x platypus replace: Eucalyptus dielsii x Eucalyptus platypus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus falcata subsp. falcata replace: Eucalyptus falcata var. falcata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus loxophleba x Eucalyptus wandoo reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus loxophleba x wandoo replace: Eucalyptus x [Eucalyptus loxophleba x wandoo; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2168,7 +2178,7 @@ taxonomic_updates: replace: Eucalyptus macrocarpa x Eucalyptus pyriformis reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus macrocarpa x pyriformis replace: Eucalyptus x [Eucalyptus macrocarpa x pyriformis; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2178,12 +2188,12 @@ taxonomic_updates: replace: Eucalyptus marginata x Eucalyptus megacarpa reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x pachyloma replace: Eucalyptus marginata x Eucalyptus pachyloma reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marginata x megacarpa replace: Eucalyptus x [Eucalyptus marginata x megacarpa; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2198,12 +2208,12 @@ taxonomic_updates: replace: Eucalyptus oldfieldii subsp. Millar Range (M.French 303) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus preissiana x staeri replace: Eucalyptus preissiana x Eucalyptus staeri reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus preissiana x staeri replace: Eucalyptus x [Eucalyptus preissiana x staeri; WAH_2022_2] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -2212,425 +2222,429 @@ taxonomic_updates: - find: Eucalyptus rhodantha var. xpetiolaris replace: Eucalyptus rhodantha var. x petiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus sargentii subsp. onesia replace: Eucalyptus sargentii subsp. onesis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus sp. Esperance (M.E. French 1579) replace: Eucalyptus sp. Esperance (M.E.French 1579) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Eyre (K. Hill & L.A.S. Johnson KH 2170) replace: Eucalyptus sp. Eyre (K.Hill & L.A.S. Johnson KH 2170) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. F Kimberley Flora replace: Eucalyptus sp. F reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fitzgerald River (M.I.H. Brooker 10923) replace: Eucalyptus sp. Fitzgerald River (M.I.H.Brooker 10923) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Fraser Range (D. Nicolle 2157) replace: Eucalyptus sp. Fraser Range (D.Nicolle 2157) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. H Kimberley Flora (S.J. Forbes 2560) replace: Eucalyptus sp. H Kimberley Flora (S.G.Forbes 2560) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Lake Johnston (D. Nicolle & M. French DN 3663) replace: Eucalyptus sp. Lake Johnston (D.Nicolle & M.French DN 3663) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Marvel Loch (D. Nicolle & M. French DN 4794) replace: Eucalyptus sp. Marvel Loch (D.Nicolle & M.French DN 4794) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Ravensthorpe (A.S. George 616) Southern Red Mallee replace: Eucalyptus sp. Ravensthorpe (A.S.George 616) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Truslove (M.I.H. Brooker 7499) replace: Eucalyptus sp. Truslove (M.I.H.Brooker 7499) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L. Johnson 9127 & B. Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus trichopoda replace: Eucalyptus longissima reason: Manual match to APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus vegrandis subsp. Fine leaf replace: Eucalyptus vegrandis subsp. Fine leaf (P.J.White 452) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Eucalyptus x erectifolia + replace: Eucalyptus erectifolia + reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Eucalyptus xbalanites replace: Eucalyptus x balanites reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbennettiae replace: Eucalyptus x bennettiae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xbrachyphylla replace: Eucalyptus x brachyphylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xcarnabyi replace: Eucalyptus x carnabyi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xchrysantha replace: Eucalyptus x chrysantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerectifolia replace: Eucalyptus erectifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xerythrandra replace: Eucalyptus x erythrandra reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus ximpensa replace: Eucalyptus x impensa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xkalganensis replace: Eucalyptus x kalganensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xlateritica replace: Eucalyptus x lateritica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmissilis replace: Eucalyptus x missilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xmundijongensis replace: Eucalyptus x mundijongensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xphylacis replace: Eucalyptus x phylacis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xstoataptera replace: Eucalyptus x stoataptera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus xtetragona replace: Eucalyptus x tetragona reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphorbia drummondii subsp. drummondii replace: Euphorbia drummondii var. drummondii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Euphorbia sp. B Kimberley Flora (B.J. Carter 629) replace: Euphorbia sp. B Kimberley Flora (B.J.Carter 629) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. epacridoides ms replace: Eutaxia epacridoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia epacridoides subsp. sparsifolia replace: Eutaxia epacridoides subsp. sparsifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. hirsuta replace: Eutaxia neurocalyx subsp. hirsuta MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. leptophylla replace: Eutaxia neurocalyx subsp. leptophylla MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia neurocalyx subsp. major replace: Eutaxia neurocalyx subsp. major MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eutaxia sp. Jasper Hill (R.J. Cranfield 8607) replace: Eutaxia sp. Jasper Hill (R.J.Cranfield 8607) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eutaxia sp. North Ironcap (P. Armstrong PA 06/898) replace: Eutaxia sp. North Ironcap (P.Armstrong et al. 06/898) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Festulolium loliaceum replace: Lolium arundinaceum subsp. arundinaceum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Fimbristylis sp. A Kimberley Flora (A.S. George 13584) replace: Fimbristylis sp. A Kimberley Flora (A.S.George 13584) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. B Kimberley Flora (K.A. Menkhorst 767) replace: Fimbristylis sp. B Kimberley Flora (K.A.Menkhorst 767) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. C Kimberley Flora (T.G. Hartley 14511) replace: Fimbristylis sp. C Kimberley Flora (T.G.Hartley 14511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. D Kimberley Flora (A.C. Beauglehole 52448) replace: Fimbristylis sp. D Kimberley Flora (A.C.Beauglehole 52448) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. E Kimberley Flora (C.R. Dunlop 5403) replace: Fimbristylis sp. E Kimberley Flora (C.R.Dunlop 5403) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. F Kimberley Flora (A.S. George 13789) replace: Fimbristylis sp. F Kimberley Flora (A.S.George 13789) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. G Kimberley Flora (A.C. Beauglehole 51810) replace: Fimbristylis sp. G Kimberley Flora (A.C.Beauglehole 51810) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. I Kimberley Flora (R.J. Hnatiuk 112) replace: Fimbristylis sp. I Kimberley Flora (R.J.Hnatiuk 112) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. K Kimberley Flora (E. Langfield 40) replace: Fimbristylis sp. K Kimberley Flora (E.Langfield 40) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. L Kimberley Flora (K.F. Kenneally 11167) replace: Fimbristylis sp. L Kimberley Flora (K.F.Kenneally 11167) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Fimbristylis sp. Shay Gap (K.R. Newbey 10293) replace: Fimbristylis sp. Shay Gap (K.R.Newby 10293) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species -- find: Gahnia sp. dull bases (K.R. Newbey 5111) - replace: Gahnia sp. dull bases (K.R.Newbey 5111) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. Headland (G.J. Keighery 8501) replace: Gahnia sp. Headland (G.J.Keighery 8501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gahnia sp. L (K.R. Newbey 7888) replace: Gahnia sp. L (K.R.Newbey 7888) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gahnia sp. dull bases (K.R. Newbey 5111) + replace: Gahnia sp. dull bases (K.R.Newbey 5111) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Gastrolobium asperum replace: Gastrolobium asperum MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Gastrolobium sp. crenulatum capitate (E. & S. Pignatti 1588) - replace: Gastrolobium crenulatum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. East Peak (E.D. Middleton EDM 43) replace: Gastrolobium sp. East Peak (E.D.Middleton EDM 43) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Harvey (G.J. Keighery 16821) replace: Gastrolobium sp. Harvey (G.J.Keighery 16821) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. Prostrate Boddington (M. Hislop 2130) replace: Gastrolobium sp. Prostrate Boddington (M.Hislop 2130) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gastrolobium sp. crenulatum capitate (E. & S. Pignatti 1588) + replace: Gastrolobium crenulatum + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Gastrolobium wonganense replace: Gastrolobium wonganensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A. Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Binnu (K.A.Shepherd & J. Wege KS 1301) replace: Geleznowia sp. Binnu (K.A.Shepherd & J.Wege KS 1301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia sp. Marchagee (A. Crawford ADC 1353) replace: Geleznowia sp. Marchagee (A.Crawford ADC 1353) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia verrucosa subsp. Kalbarri replace: Geleznowia verrucosa subsp. Kalbarri (L.M.Broadhurst 123) L.M.Broadh. reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Geleznowia verrucosa subsp. verrucosa ms replace: Geleznowia verrucosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Hamersley Range hilltops (S. van Leeuwen 4345) replace: Genus sp. Hamersley Range hilltops (S.van Leeuwen 4345) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genus sp. Nillup (R.D. Royce 98) replace: Genus sp. Nillup (R.D.Royce 98) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine aphyonota replace: Glycine aphyonotos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine lactovirens replace: Glycine lactivirens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Billabong (B. Nordenstam & A. Anderberg 203) replace: Gnephosis sp. Billabong (B.Nordenstam & A.Anderberg 203) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Norseman (K.R. Newbey 8096) replace: Gnephosis sp. Norseman (K.R.Newbey 8096) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnephosis sp. Pt Quobba (P.G. Wilson 12622) replace: Gnephosis sp. Pt Quobba (P.G.Wilson 12622) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium sp. Stirling Range (C.F. Wilkins et al. CW 2513) replace: Gompholobium sp. Stirling Range (C.F.Wilkins et al. CW 2513) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Belele (D.W. Goodall 3215) replace: Gomphrena sp. Belele (D.W.Goodall 3215) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gomphrena sp. Maret Islands (A.A. Mitchell 5414) replace: Gomphrena sp. Maret Islands (A.A.Mitchell 5414) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Gonocarpus benthamii subsp. benthamii ms - replace: Gonocarpus benthamii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus benthamii subsp. Stirling replace: Gonocarpus benthamii subsp. Stirling (C.J.Robinson 1080) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Gonocarpus benthamii subsp. benthamii ms + replace: Gonocarpus benthamii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Goodenia affinis de replace: Goodenia affinis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pinifolia de replace: Goodenia pinifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia pulchella subsp. Coastal Plain A replace: Goodenia pulchella subsp. Coastal Plain A (M.Hislop 634) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Coastal Plain B replace: Goodenia pulchella subsp. Coastal Plain B (L.W.Sage 2336) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Dragon Rocks replace: Goodenia pulchella subsp. Dragon Rocks (A.M.Coates 3374) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Mt Barker replace: Goodenia pulchella subsp. Mt Barker (K.F.Kenneally 1166) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia pulchella subsp. Wheatbelt replace: Goodenia pulchella subsp. Wheatbelt (L.W.Sage & F.Hort 795) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Goodenia sp. Bachsten Creek (M.D. Barrett 685) replace: Goodenia sp. Bachsten Creek (M.D.Barrett 685) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Beyondie (L.W. Sage & S. van Leeuwen LWS 2518) replace: Goodenia sp. Beyondie (L.W.Sage & S.J.van Leeuwen LWS 2518) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Carnarvon Range (D.J. Edinger Nats 30) replace: Goodenia sp. Carnarvon Range (D.J.Edinger Nats 30) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Dampier Peninsula (B.J. Carter 675) replace: Goodenia sp. Dampier Peninsula (B.J.Carter 675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. East Pilbara (A.A. Mitchell PRP 727) O'Meara's Goodenia replace: Goodenia sp. East Pilbara (A.R.Mitchell PRP 727) WA Herbarium reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Little Sandy Desert (A.S. Mitchell 989) replace: Goodenia sp. Little Sandy Desert (A.S.Mitchell 989) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mount Bomford (M.D. Barrett 423) replace: Goodenia sp. Mount Bomford (M.D.Barrett 423) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Mt Elvire (D.J. Edinger 1857) replace: Goodenia sp. Mt Elvire (D.J.Edinger 1857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. South Coast (A.R. Annels ARA 1846) replace: Goodenia sp. South Coast (A.R.Annels 1846) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia sp. Stirling Range (R. Cranfield & D. Kabay 9148) replace: Goodenia sp. Stirling Range (R.Cranfield & D.Kabay 9148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia xanthotricha de replace: Goodenia xanthotricha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grammosolen sp. Mt Ridley (W.R. Archer 1210911) replace: Grammosolen sp. Mt Ridley (W.R.Archer 1210911) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea brachystylis subsp. Busselton replace: Grevillea brachystylis subsp. Busselton (G.J.Keighery s.n. 28/8/1985) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Gunapin (F. Hort 308) replace: Grevillea sp. Gunapin (F.Hort 308) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Harrismith (G.J. Keighery & N. Gibson 7094) replace: Grevillea sp. [Grevillea sp. Harrismith (G.J. Keighery & N. Gibson 7094); WAH_2022_2] @@ -2640,576 +2654,580 @@ taxonomic_updates: - find: Grevillea sp. Stirling Range (D.J. McGillivray 3488 & A.S. George) replace: Grevillea sp. Stirling Range (D.J.McGillivray 3488 & A.S.George) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Trayning (W. Johnston WJ 071) replace: Grevillea tesselata reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Victoria Desert (R. Davis et al. RD 11611) replace: Grevillea sp. Victoria Desert (R.Davis et al. RD 11611) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Yerilgee Hills (T. Laslett TL 025) replace: Grevillea sp. Yerilgee Hills (T.Laslett TL 025) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea squiresae replace: Grevillea squiresiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea synapheae subsp. A Flora of Australia replace: Grevillea synapheae subsp. A Flora of Australia (S.D.Hopper 6333) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea uncinulata subsp. Coomallo replace: Grevillea uncinulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guichenotia basivirida replace: Guichenotia basiviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gunniopsis sp. Nuytsland (G.J. Keighery & J.J. Alford 522) replace: Gunniopsis sp. Nuytsland (G.J.Keighery & J.J.Alford 522) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gyrostemon sp. Whoogarup Range (A.S. George 1910) replace: Gyrostemon sp. Whoogarup Range (A.S.George 1910) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haemodorum sp. A Kimberley Flora (K.F. Kenneally 8639) replace: Haemodorum sp. A Kimberley Flora (K.F.Kenneally 8639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna replace: Hakea cygnus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea cygna subsp. needlei replace: Hakea cygnus subsp. needlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea sp. Great Victoria Desert (L. Cockram LAC 139) - replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) + replace: Hakea sp. Great Victoria Desert (L.Cockram LAC 139) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (B. Keighery 2599) replace: Hakea sp. Walyunga (B.Keighery 2599) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Walyunga (L. Penn s.n.) replace: Hakea sp. Walyunga (L.Penn s.n.) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea sp. Yalgorup (B.J. Keighery & N. Gibson 897) replace: Hakea sp. Yalgorup (B.J.Keighery & N.Gibson 897) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania cyanea var. Allambi Stn replace: Halgania cyanea var. Allambi Stn (B.W.Strong 676) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania cyanea var. Charleville replace: Halgania cyanea var. (Charleville R.W.Purdie+ 111) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas -- find: Halgania gustafsenii var. gustafsenii ms - replace: Halgania gustafsenii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Halgania gustafsenii var. Mid West replace: Halgania gustafsenii var. Mid West (G.Perry 370) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Halgania gustafsenii var. gustafsenii ms + replace: Halgania gustafsenii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Halgania solanacea var. Mt Doreen replace: Halgania solanacea var. Mt Doreen (G.M.Chippendale 4206) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania solanacea var. solanacea ms replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. A Kimberley Flora (H.A. Johnson 5123) replace: Halgania sp. A Kimberley Flora (H.A.Johnson 5123) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Peak Eleanora (M.A. Burgman 3547 B) replace: Halgania sp. Peak Eleanora (M.A.Burgman 3547 B) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halgania sp. Wongan Hills (K.F. Kenneally 2393) replace: Halgania sp. Wongan Hills (K.F.Kenneally 2393) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halosarcia halocnemoides subsp. Lake Grace replace: Halosarcia halocnemoides subsp. Lake Grace ( N.Casson G231.10) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia sp. Lake Moore (M.N. Lyons 2603) replace: Halosarcia sp. Lake Moore (M.N.Lyons 2603) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa sp. Eremaean (A.S. George 3894) replace: Harmsiodoxa sp. Eremaean (A.S.George 3894) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Bachsten Creek (R.L. Barrett & M.D. Barrett RLB 3808) replace: Helicteres sp. Bachsten Creek (R.L.Barrett & M.D.Barrett RLB 3808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Carson River (I. Cowie & Wendell IC 4232) replace: Helicteres sp. Carson River (I.Cowie & Wendell IC 4232) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Manning Peak (K.F. Kenneally 10266 & B.P.M. Hyland) replace: Helicteres sp. Manning Peak (K.F.Kenneally 10266 & B.P.M.Hyland) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mertens Falls (K.F. Kenneally 7887) replace: Helicteres sp. Mertens Falls (K.F.Kenneally 7887) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helicteres sp. Mt Shadforth (I.R. Telford 11609) replace: Helicteres sp. Mt Shadforth (I.R.Telford 11609) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra glabra subsp. glabra ms replace: Hemiandra glabra reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemiandra sp. Eneabba (H. Demarz 3687) replace: Hemiandra sp. Eneabba (H.Demarz 3687) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Arrino (J.J. Alford 1175) replace: Hemigenia sp. Arrino (J.J.Alford 1175) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Cue (K.F. Kenneally 47A) replace: Hemigenia sp. Cue (K.F.Kenneally 47A) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Dalwallinu (W.E. Blackall 2870) replace: Hemigenia sp. Dalwallinu (W.E.Blackall 2870) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Edah (J.W. Green 1601) replace: Hemigenia sp. Edah (J. W.Green 1601) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Gibson (R. Coveny 7893 & B.R. Maslin) replace: Hemigenia sp. Gibson (R.Coveny 7893 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Glenburgh (R.J. Cranfield 9725) replace: Hemigenia sp. Glenburgh (R.J.Cranfield 9725) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Jibberding (J. D'Alonzo 418) replace: Hemigenia sp. Jibberding (J.D'Alonzo 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Hemigenia sp. major (C.A. Gardner 2677) - replace: Hemigenia sp. major (C.A.Gardner 2677) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Merredin (M. Koch 2959) replace: Hemigenia sp. Merredin (M.Koch 2959) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Newdegate (E. Bishop 75) replace: Hemigenia sp. Newdegate (E.Bishop 75) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Paynes Find (A.C. Beauglehole 49138) replace: Hemigenia sp. Paynes Find (A.C.Beauglehole 49138) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Pindar (H. Demarz 7428) replace: Hemigenia sp. Pindar (H.Demarz 7428) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Tallering (H. Pringle 3323) replace: Hemigenia sp. Tallering (H.Pringle 3323) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Wilroy (B.J. Conn 2150) replace: Hemigenia sp. Wilroy (B.J.Conn 2150) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yalgoo (A.M. Ashby 2624) replace: Hemigenia sp. Yalgoo (A.M.Ashby 2624) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Yuna (A.C. Burns 95) replace: Hemigenia sp. Yuna (A.C.Burns 95) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hemigenia sp. major (C.A. Gardner 2677) + replace: Hemigenia sp. major (C.A.Gardner 2677) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Hibbertia sp. A Kimberley Flora (T.E.H. Aplin et al. 898) replace: Hibbertia sp. A Kimberley Flora (T.E.H.Aplin et al. 898) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Kojonup (C.M. Lewis 288) replace: Hibbertia sp. Kojonup (C.M.Lewis 288) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Tathra (M.A. Langley & J.M. Harvey 1873) replace: Hibbertia sp. Tathra (M.A.Langley & J.M.Harvey 1873) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. A Kimberley Flora (E.A. Chesterfield 310) replace: Hibiscus sp. A Kimberley Flora (E.A.Chestfield 310) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. B Kimberley Flora (P.G. Wilson 11143) replace: Hibiscus sp. B Kimberley Flora (P.G.Wilson 11143) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Canga (P.J.H. Hurter & J. Naaykens 11013) replace: Hibiscus sp. Canga (P.J.H.Hurter & J.Naaykens 11013) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Brockman (E. Thoma ET 1354) replace: Hibiscus sp. Mt Brockman (E.Thoma ET 1354) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Mt Robinson (G. Byrne 3537) replace: Hibiscus sp. Mt Robinson (G.Byrne 3537) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Theda (M.D. Barrett & R.L. Barrett MDB 2144) replace: Hibiscus sp. Theda (M.D.Barrett & R.L.Barrett MDB 2144) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibiscus sp. Wonganoo Station (K. Boladeras 125) replace: Hibiscus sp. Wonganoo Station (K.Boladeras 125) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus floribundus subsp. Hill River replace: Hybanthus floribundus subsp. Hill River (E.M.Bennett 2252) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hydatella sp. Austin Bay (N. Gibson & M. Lyons 2387) replace: Hydatella sp. Austin Bay (N.Gibson & M.Lyons 2387) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coorowensis replace: Hydrocotyle coorowensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle coraginaensis replace: Hydrocotyle coraginaensis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle crassipes replace: Hydrocotyle crassipes MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle decipiens replace: Hydrocotyle decipiens MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle hexaptera replace: Hydrocotyle hexaptera MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Truslove (M.A. Burgman 4419) replace: Hydrocotyle sp. Truslove (M.A.Burgman 4419) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle sp. Warriedar (P.G. Wilson 12267) replace: Hydrocotyle sp. Warriedar (P.G.Wilson 12267) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hydrocotyle vigintimilia replace: Hydrocotyle vigintimilia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20/896 CAS) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cascade (R. Bruhn 20896) replace: Hypocalymma sp. Cascade (R.Bruhn 20896) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Cataby (G.J. Keighery 5151) replace: Hypocalymma sp. Cataby (G.J.Keighery 5151) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis sp. Prince Regent River (M.D. Barrett 924 B) replace: Hypoxis sp. Prince Regent River (M.D.Barrett 924 B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera gilesii subsp. gilesii ms replace: Indigofera sp. Gilesii (M.E.Trudgen 15869) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera mackinlayi replace: Indigofera mckinlayi reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. A Kimberley Flora (G.J. Keighery & N. Gibson 70) replace: Indigofera sp. A Kimberley Flora (G.J.Keighery & N.Gibson 70) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Bungaroo Creek (S. van Leeuwen 4301) replace: Indigofera sp. Bungaroo Creek (S.van Leeuwen 4301) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Mackinlayi (A.A. Mitchell 7086) replace: Indigofera sp. Mackinlayi (A.A.Mitchell 7086) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera sp. Warburton (A.A. Munir 5209) replace: Indigofera sp. Warburton (A.A.Munir 5209) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. A Kimberley Flora (L.J. Penn 84) replace: Ipomoea sp. A Kimberley Flora (L.J.Pen 84) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea sp. Kalumburu (A.A. Mitchell 3869B) replace: Ipomoea sp. Kalumburu (A.A.Mitchell 3869B) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Canning Reservoir (M.D. Tindale 121 & B.R. Maslin) replace: Isopogon sp. Canning Reservoir (M.D.Tindale 121 & B.R.Maslin) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Darling Range (F. Hort 1662) replace: Isopogon sp. Darling Range (F.Hort 1662) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Fitzgerald River (D.B. Foreman 813) replace: Isopogon sp. Fitzgerald River (D.B.Foreman 813) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Ravensthorpe (D.B. Foreman 1207) replace: Isopogon sp. Ravensthorpe (D.B.Foreman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isopogon sp. Watheroo (D. Foreman 477) replace: Isopogon sp. Watheroo (D.Foreman 477) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. cristata replace: Isotoma hypocrateriformis var. cristata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotoma hypocrateriformis var. hypocrateriformis ms replace: Isotoma hypocrateriformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. trichogramma replace: Isotoma hypocrateriformis var. trichogamma MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Isotropis sp. Arid zone (G. Byrne 2775) replace: Isotropis iophyta reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Shark Bay (M.E. Trudgen 7170) replace: Isotropis sp. Shark Bay (M.E.Trudgen 7170) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotropis sp. Yalgoo (S. Patrick 2375) replace: Isotropis petrensis reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jasminum sp. Exmouth (G. Marsh 77) replace: Jasminum sp. Exmouth (G.Marsh 77) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Marandoo (M.E. Trudgen 1554) replace: Josephinia sp. Marandoo (M.E.Trudgen 1554) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Josephinia sp. Mt Edgar Station (N.T. Burbidge 1194) replace: Josephinia sp. Mt Edgar Station (N.T.Burbidge 1194) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kennedia sp. South coast (T.R. Lally 1576 & I.P. Lally) replace: Kennedia sp. south coast (T.R.Lally 1576 & I.P.Lally) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia adenogyna replace: Keraudrenia adenogyna MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. cacaobrunnea ms replace: Keraudrenia cacaobrunnea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia cacaobrunnea subsp. undulata replace: Keraudrenia cacaobrunnea subsp. undulata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia saxatilis replace: Keraudrenia saxatilis MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Keraudrenia velutina subsp. elliptica replace: Keraudrenia velutina subsp. elliptica MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Keraudrenia velutina subsp. velutina replace: Keraudrenia velutina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lambertia orbifolia subsp. Scott River Plains replace: Lambertia orbifolia subsp. Scott River Plains (L.W.Sage 684) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Lambertia orbifolia subsp. orbifolia ms + replace: Lambertia orbifolia subsp. orbifolia MS + reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Lasiopetalum cordifolium subsp. cordifolium ms replace: Lasiopetalum cordifolium reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum leucogriseum replace: Lasiopetalum leucogriseum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum molle subsp. molle ms replace: Lasiopetalum molle reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum oldfieldii subsp. oldfieldii ms replace: Lasiopetalum oldfieldii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A. Griffin 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E. Ried 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Coorow (E.Reid 101) replace: Lasiopetalum sp. Coorow (E.Ried 101) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Denmark (B.G. Hammersley 2012) replace: Lasiopetalum sp. Denmark (B.G.Hammersley 2012) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Desmond (N. McQuoid 653) replace: Lasiopetalum sp. Desmond (N.McQuoid 653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Hill River (T.N. Stoate 5) replace: Lasiopetalum sp. Hill River (T.N.Stoate 5) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Kukerin (C.A. Gardner 13646) replace: Lasiopetalum sp. Kukerin (C.A.Gardner 13646) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Caroline (S.D. Hopper SDH 6381) replace: Lasiopetalum sp. Mount Caroline (S.D.Hopper SDH 6381) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mount Lesueur (E.A. Griffin 1997) replace: Lasiopetalum sp. Mount Lesueur (E.A.Griffin 1997) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Mt Ragged (T.E.H. Aplin 4349) replace: Lasiopetalum sp. Mt Ragged (T.E.H.Aplin 4349) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Northam (F. Hort 1196) replace: Lasiopetalum sp. Northam (F.Hort 1196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Toodyay (F. Hort 2689) replace: Lasiopetalum sp. Toodyay (F.Hort 2689) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K. Shepherd & C. Wilkins KS 220) replace: Lasiopetalum erectifolium reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Weam Reserve (M. Hislop 2755) replace: Lasiopetalum sp. Weam Reserve (M.Hislop 2755) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea pinnacula replace: Latrobea pinnaculum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Latrobea sp. South Coast (A.M. Ashby 1949) replace: Latrobea sp. South Coast (A.M.Ashby 1949) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lawrencia sp. Anna Plains (N.T. Burbidge 1433) replace: Lawrencia sp. Anna Plains (N.T.Burbidge 1433) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lechenaultia formosa subsp. Wheatbelt replace: Lechenaultia formosa subsp. 'Wheatbelt' (R.J.Cranfield 4718) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidobolus preissianus subsp. arcuatus replace: Lepidobolus preissianus subsp. 'arcuatus' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lepidosperma sp. A2 Island Flat (G.J. Keighery 7000) replace: Lepidosperma sp. A2 Island Flat (G.J.Keighery 7000) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Giant Terete Culms (S.D. Hopper 8631) replace: Lepidosperma sp. Giant Terete Culms (S.D.Hopper 8631) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. K Boorabbin (K.L. Wilson 2579) replace: Lepidosperma sp. K Boorabbin (K.L.Wilson 2579) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. P1 small head (M.D. Tindale 166A) replace: Lepidosperma sp. P1 small head (M.D.Tindale 166A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. U1 big heads (A.S. George 11294) replace: Lepidosperma sp. U1 big heads (A.S.George 11294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidosperma sp. Z dark sheath (P.G. Wilson 10177) replace: Lepidosperma sp. Z dark sheath (P.G.Wilson 10177) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptosema cervicorne replace: Leptosema cervicornu reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum sp. Peak Charles/Norseman (K.R. Newbey 5243) replace: Leptospermum sp. Peak Charles/Norseman (K.R.Newbey 5243) reason: Manual match to APC accepted name (Elizabeth Wenk, 2022-11-21) @@ -3217,208 +3235,212 @@ taxonomic_updates: - find: Leucanthemum xsuperbum replace: Leucanthemum x superbum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon compressicarpus replace: Leucopogon compressicarpus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon inflexifolius replace: Leucopogon inflexifolius MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. Arrino (M. Hislop 2675) + replace: Leucopogon sp. Arrino (M.Hislop 2675) + reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) + taxonomic_resolution: species - find: Leucopogon sp. Badgingarra (R. Davis 421) replace: Leucopogon sp. Badgingarra (R.Davis 421) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Barren Range (A.S. George 10092) replace: Leucopogon sp. Barren Range (A.S.George 10092) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bifid Eneabba (M. Hislop 1927) replace: Leucopogon sp. Bifid Eneabba (M.Hislop 1927) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bindoon (F. Hort 2766) replace: Leucopogon sp. Bindoon (F.Hort 2766) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bonnie Hill (K.R. Newbey 9831) replace: Leucopogon sp. Bonnie Hill (K.R.Newbey 9831) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Boyagin (M. Hislop 2825) replace: Leucopogon sp. Boyagin (M.Hislop 2825) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bremer Bay (K.R. Newbey 4667) replace: Leucopogon sp. Bremer Bay (K.R.Newbey 4667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Brookton (K. Kershaw & L. Kerrigan KK 2192) replace: Leucopogon sp. Brookton (K.Kershaw & L.Kerrigan KK2192) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Bungulla (R.D. Royce 3435) replace: Leucopogon sp. Bungulla (R.D.Royce 3435) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Cape Arid (M. Paxman 50) replace: Leucopogon sp. Cape Arid (M.Paxman 50) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) - replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Clyde Hill (M.A. Burgman 1207) replace: Leucopogon sp. Clyde Hill (M.A.Burgman 1207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coolgardie (M. Hislop & F. Hort MH 3197) replace: Leucopogon sp. Coolgardie (M.Hislop & F.Hort MH3197) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Corrigin (K. Kershaw KK 2091) replace: Leucopogon sp. Corrigin (K.Kershaw KK2091) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Coujinup (M.A. Burgman 1085) replace: Leucopogon sp. Coujinup (M.A.Burgman 1085) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Darradup (R.D. Royce 2998) replace: Leucopogon sp. Darradup (R.D.Royce 2998) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Denmark (J.M. Powell 1167) replace: Leucopogon sp. Denmark (J.M.Powell 1167) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Flynn (F. Hort, J. Hort & A. Lowrie 859) replace: Leucopogon sp. Flynn (F.Hort, J.Hort & A.Lowrie 859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Gunapin (F. Hort 808) replace: Leucopogon sp. Gunapin (F.Hort 808) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Howatharra (D. & N. McFarland 1046) replace: Leucopogon sp. Howatharra (D. & N.McFarland 1046) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ironcaps (N. Gibson & K. Brown 3070) replace: Leucopogon sp. Ironcaps (N.Gibson & K.Brown 3070) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kalbarri (J.M. Powell 1695) replace: Leucopogon sp. Kalbarri (J.M.Powell 1695) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Kau Rock (M.A. Burgman 1126) replace: Leucopogon sp. Kau Rock (M.A.Burgman 1126) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lake King (A.J.G. Wilson 65) replace: Leucopogon sp. Lake King (A.J.G.Wilson 65) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lesueur (B. Evans 530) replace: Leucopogon sp. Lesueur (B.Evans 530) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Lort River (M. Golding 3) replace: Leucopogon sp. Lort River (M.Golding 3) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Margaret River (J. Scott 207) replace: Leucopogon sp. Margaret River (J.Scott 207) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mid West (J.S. Beard 7388) replace: Leucopogon sp. Mid West (J.S.Beard 7388) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moore River (M. Hislop 1695) replace: Leucopogon sp. Moore River (M.Hislop 1695) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Moresby Range (S. Patrick 2614) replace: Leucopogon sp. Moresby Range (S.Patrick 2614) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Mount Heywood (M.A. Burgman 1211) replace: Leucopogon sp. Mount Heywood (M.A.Burgman 1211) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Murdoch (M. Hislop 1037) replace: Leucopogon sp. Murdoch (M.Hislop 1037) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Ongerup (A.S. George 16682) replace: Leucopogon sp. Ongerup (A.S.George 16682) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) - replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Pingrup (W.E. Blackall 3010) replace: Leucopogon sp. Pingrup (W.E.Blackall 3010) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Roberts Swamp (K.R. Newbey 8173) replace: Leucopogon sp. Roberts Swamp (K.R.Newbey 8173) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Salt Lake (G.F. Craig 3069) replace: Leucopogon sp. Salt Lake (G.F.Craig 3069) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. South Coast (K.R. Newbey 8213) replace: Leucopogon sp. South Coast (K.R.Newbey 8213) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Southern Granite (E.D. Middleton EDM 266) replace: Leucopogon sp. Southern Granite (E.D.Middleton EDM266) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Twertup (K.R. Newbey 10859) replace: Leucopogon sp. Twertup (K.Newbey 10859) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Walpole (R.J. Cranfield 10940) replace: Leucopogon sp. Walpole (R.J.Cranfield 10940) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wandering (F. Hort 419) replace: Leucopogon sp. Wandering (F.Hort 419) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Warradarge (M. Hislop 1908) replace: Leucopogon sp. Warradarge (M.Hislop 1908) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Wheatbelt (S. Murray 257) replace: Leucopogon sp. Wheatbelt (S.Murray 257) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Whicher Range (G.J. Keighery 11763) replace: Leucopogon sp. Whicher Range (G.J.Keighery 11763) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Windy Harbour (A. Strid 21460) replace: Leucopogon sp. Windy Harbour (A.Strid 21460) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanchep (M. Hislop 1986) replace: Leucopogon sp. Yanchep (M.Hislop 1986) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Yanneymooning (F. Mollemans 3797) replace: Leucopogon sp. Yanneymooning (F.Mollemans 3797) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon sp. ciliate Eneabba (F. Obbens & C. Godden s.n. 3/7/2003) + replace: Leucopogon sp. ciliate Eneabba (F.Obbens & C.Godden s.n. 3/7/2003) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Leucopogon sp. outer wheatbelt (M. Hislop 30) + replace: Leucopogon sp. outer wheatbelt (M.Hislop 30) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Leucopogon sulcatus replace: Leucopogon sp. Forrestania (G.F.Craig 2386) reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -3427,444 +3449,449 @@ taxonomic_updates: - find: Lobelia rhombifolia de replace: Lobelia rhombifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium multiflorum x perenne replace: Lolium multiflorum x Lolium perenne reason: Manual alignment with canonical species name in APNI (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium perenne x rigidum replace: Lolium perenne subsp. rigidum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lolium xhubbardii replace: Lolium x hubbardii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lysinema ciliatum forma replace: Lysinema ciliatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana sp. Patience (C.P. Campbell 1052) replace: Maireana sp. Patience (C.P.Campbell 1052) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Adelong (G.J. Keighery 11825) replace: Malleostemon sp. Adelong (G.J.Keighery 11825) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooljarloo (B. Backhouse s.n. 16/11/88) replace: Malleostemon sp. Cooljarloo (B.Backhouse s.n. 16/11/88) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Cooloomia (S.D. Hopper 1353) replace: Malleostemon sp. Cooloomia (S.D.Hopper 1353) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Erangy Springs (M.E. Trudgen 12030) replace: Malleostemon sp. Erangy Springs (M.E.Trudgen 12030) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Hardabutt Rapids (D. Bellairs 1654A) replace: Malleostemon sp. Hardabutt Rapids (D.Bellairs 1654A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Kalbarri (L.A. Craven 7083) replace: Malleostemon sp. Kalbarri (L.A.Craven 7083) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Moonyoonooka (R.J. Cranfield 2947) replace: Malleostemon sp. Moonyoonooka (R.J.Cranfield 2947) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Mullewa (P. Winson B7365) replace: Malleostemon sp. Mullewa (P.Winson B7365) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Nerren Nerren (A. Payne 360) replace: Malleostemon sp. Nerren Nerren (A.Payne 360) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Officer Basin (D. Pearson 350) replace: Malleostemon sp. Officer Basin (D.Pearson 350) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Woolgorong Station (M. Officer 100) replace: Malleostemon sp. Woolgorong Station (M.Officer 100) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malleostemon sp. Yerina (S.J. Patrick 2728) replace: Malleostemon sp. Yerina (S.J.Patrick 2728) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp. Bremer (N. Gibson & M. Lyons 1776) replace: Marianthus sp. Bremer (N.Gibson & M.Lyons 1776) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maytenus sp. Mt Windell (S. van Leeuwen 846) replace: Maytenus sp. Mt Windell (S.van Leeuwen 846) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Meeboldina decipiens subsp. decipiens + replace: Meeboldina decipiens MS + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Meeboldina decipiens subsp. decipiens ms replace: Leptocarpus decipiens reason: Manual match with accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca incana subsp. Gingilup replace: Melaleuca incana subsp. Gingilup (N.Gibson & M.Lyons 593) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca sp. Dongolocking (G.J. Keighery & N. Gibson 2896) replace: Melaleuca sp. Dongolocking (G.J.Keighery & N.Gibson 2896) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca sp. Gorse (A.S. George 7224) replace: Melaleuca sp. Gorse (A.S.George 7224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca xarenicola replace: Melaleuca x arenicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita replace: Mentha x piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha xpiperita var. citrata replace: Mentha x piperita var. citrata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Mentha xpiperita var. piperita replace: Mentha x piperita var. piperita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Merremia sp. B Kimberley Flora (B.J. Carter 533) replace: Merremia sp. B Kimberley Flora (B.J.Carter 533) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Boxwood (K.R. Newbey 4200) replace: Microcorys sp. Boxwood (K.R.Newbey 4200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Coomallo (L. Haegi 2677) replace: Microcorys sp. Coomallo (L.Haegi 2677) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Forrestania (V. English 2004) replace: Microcorys sp. Forrestiana (V.English 2004) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Mt Gibson (S. Patrick 2098) replace: Microcorys sp. Mt Gibson (S.Patrick 2098) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Microcorys sp. stellate (A. Strid 21885) - replace: Microcorys sp. stellate (A.Strid 21885) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcorys sp. Tarin Rock (E.J. Croxford 5251) replace: Microcorys sp. Tarin Rock (E.J.Croxford 5251) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Microcorys sp. stellate (A. Strid 21885) + replace: Microcorys sp. stellate (A.Strid 21885) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Micromyrtus racemosa var. Jingemarra replace: Micromyrtus racemosa var. Jingemarra (R.J.Cranfield 5253a) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus racemosa var. north-west replace: Micromyrtus racemosa var. north-west (R.J.Cranfield 2891) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus triptycha subsp. elata replace: Micromyrtus triptycha subsp. elata MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. longiflora replace: Micromyrtus triptycha subsp. longiflora MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Micromyrtus triptycha subsp. triptycha ms replace: Micromyrtus triptycha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Micromyrtus uniovula replace: Micromyrtus uniovulum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia bursarioides replace: Mirbelia bursarioides MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia cordifolia replace: Mirbelia cordifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia magentea replace: Mirbelia magentea MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Bursarioides (T.R. Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Carnarvon (J.S. Beard 6008) replace: Mirbelia sp. Carnarvon (J.S.Beard 6008) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Denham (W.E. Blackall 556) replace: Mirbelia sp. Denham (W.E.Blackall 556) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Helena & Aurora (B.J. Lepschi 2003) replace: Mirbelia sp. Helena & Aurora (B.J.Lepschi 2003) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) - replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Kalbarri (M.D. Crisp 6261) replace: Mirbelia sp. Kalbarri (M.D.Crisp 6261) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Magentea (T.E.H. Aplin 5976) replace: Mirbelia sp. Magentea (T.E.H.Aplin 5976) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Mt Heywood (T.E.H. Aplin 4154) replace: Mirbelia sp. Mt Heywood (T.E.H.Aplin 4154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Ternata (M.D. Crisp & L.G. Cook MDC 9267) replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Zuytdorp (G.J. Keighery & N. Gibson 1688) replace: Mirbelia sp. Zuytdorp (G.J.Keighery & N.Gibson 1688) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mirbelia sp. hooked keel (M.D. Crisp 8519 & W. Keys) + replace: Mirbelia sp. hooked keel (M.D.Crisp 8519 & W.Keys) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Mirbelia ternata replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca oligarrhenoides subsp. Gibson replace: Monotoca oligarrhenoides subsp. Gibson (R.D.Royce 3573) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. A Kimberley Flora (K.F. Kenneally 7909) replace: Mukia sp. A Kimberley Flora (K.F.Kenneally 7909) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mukia sp. D Flora of Australia (A.A. Mitchell PRP 1121) replace: Mukia sp. D Flora of Australia (A.A.Mitchell PRP 1121) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oldenlandia sp. Hamersley Station (A.A. Mitchell PRP 1479) replace: Oldenlandia sp. Hamersley Station (A.A.Mitchell PRP 1479) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia brachyglossa replace: Olearia brachyglossa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. dampieri ms replace: Olearia dampieri MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri subsp. eremicola replace: Olearia dampieri subsp. eremicola MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ornithogalum longebracteatum replace: Ornithogalum longibracteatum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion microphyllum replace: Otion microphyllum MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion simplicifolium replace: Otion simplicifolium MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Otion tortile replace: Otion tortile MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandanus spiralis var. septemloculatus replace: Pandanus spiralis var. septemloculatus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas -- find: Patersonia drummondii subsp. drummondii ms - replace: Patersonia drummondii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Patersonia drummondii subsp. Northern replace: Patersonia drummondii subsp. Northern (R.D.Royce UWA 777) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Patersonia drummondii subsp. drummondii ms + replace: Patersonia drummondii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Pelargonium australe subsp. australe ms replace: Pelargonium australe var. australe reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium australe subsp. drummondii replace: Pelargonium australe subsp. drummondii MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pelargonium littorale subsp. littorale ms replace: Pelargonium littorale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xasperum replace: Pelargonium x asperum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium xdomesticum replace: Pelargonium x domesticum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pentalepis sp. Mt House (E.M. Bennett 1877) replace: Pentalepis sp. Mt House (E.M.Bennett 1877) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T. Burbidge & A. Kanis 8158) replace: Peplidium sp. C Evol. Fl. Fauna Arid Aust. (N.T.Burbidge & A.Kanis 8158) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S. Weston 12768) replace: Peplidium sp. E Evol. Fl. Fauna Arid Aust. (A.S.Weston 12768) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petrophile chrysantha subsp. Watheroo replace: Petrophile chrysantha subsp. Watheroo (K.M.Allan 57) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petrophile squamata subsp. squamata replace: Petrophile squamata subsp. squamata MS reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petunia xhybrida replace: Petunia x hybrida reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Mt Gibbs (G.F. Craig 6658) replace: Phebalium sp. Mt Gibbs (G.F.Craig 6658) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phebalium sp. Yerilgee Sandplain (J. Jackson 223) replace: Phebalium sp. Yerilgee Sandplain (J.Jackson 223) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca sp. Latham (F. Keast L4B 043) replace: Philotheca sp. Latham (F.Keast L4B 043) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca spicata subsp. Moore River National Park replace: Philotheca spicata subsp. Moore River National Park (G. & D.Woodman Op 47) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Phyllanthus sp. D Kimberley Flora (C.R. Dunlop 5302) replace: Phyllanthus sp. D Kimberley Flora (C.R.Dunlop 5302) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pilostyles sp. Northern Sandplains (P. Armstrong s.n. PERTH 06590179) replace: Pilostyles sp. Northern Sandplains (P.Armstrong s.n. PERTH 06590179) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp. Tarin Rock (E.J. Croxford 2118) replace: Pimelea sp. Tarin Rock (E.J.Croxford 2118) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Hamersley (M.E. Trudgen 11207) replace: Plantago sp. Hamersley (M.E.Trudgen 11207) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plantago sp. Mt Magnet (A.S. George 6793) replace: Plantago sp. Mt Magnet (A.S.George 6793) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platanus xhispanica replace: Platanus x hispanica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Eneabba (R. Hnatiuk 770001) replace: Platysace sp. Eneabba (R.Hnatiuk 770001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kalbarri (D. & B. Bellairs 1383) replace: Platysace sp. Kalbarri (D. & B.Bellairs 1383) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Kennedy (P.G. Wilson 8450) replace: Platysace sp. Kennedy (P.G.Wilson 8450) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. Stirling (J.M. Fox 88/262) replace: Platysace sp. Stirling (J.M.Fox 88/262) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pluchea sp. B Kimberley Flora (K.F. Kenneally 9526A) replace: Pluchea sp. B Kimberley Flora (K.F.Kenneally 9526A) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Carnarvon Range (D.J. Edinger Nats 33) replace: Podolepis sp. Carnarvon Range (D.J.Edinger Nats 33) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Podolepis sp. Great Victoria Desert (A.S. George 8219) replace: Podolepis sp. Great Victoria Desert (A.S.George 8219) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polycarpaea sp. A Kimberley Flora (K.F. Kenneally 8887) replace: Polycarpaea sp. A Kimberley Flora (K.F.Kenneally 8887) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. A Kimberley Flora (K.F. Kenneally 7752) replace: Polygala sp. A Kimberley Flora (K.F.Kenneally 7752) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polygala sp. B Kimberley Flora (T.E.H. Aplin et al. 715) replace: Polygala sp. B Kimberley Flora (T.E.H.Aplin et al. 715) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polymeria sp. A Kimberley Flora (T.E.H. Aplin et al. 418) replace: Polymeria sp. A Kimberley Flora (T.E.H.Aplin et al. 418) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomax sp. desert (A.S. George 11968) replace: Pomax sp. desert (A.S.George 11968) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poranthera sp. Kings Park (R.L. Barrett 2958) replace: Poranthera sp. Kings Park (R.L.Barrett 2958) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis glandulosa x velutina replace: Prosopis glandulosa x Prosopis velutina reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -3873,333 +3900,333 @@ taxonomic_updates: - find: Pseudactinia sp. Bruce Rock (J. Buegge D36) replace: Pseudactinia sp. Bruce Rock (J.Buegge D36) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudactinia sp. Bungalbin Hill (F.H. & M.P. Mollemans 3069) replace: Pseudactinia sp. Bungalbin Hill (F.H. & M.P.Mollemans 3069) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterocaulon sp. A Kimberley Flora (B.J. Carter 599) replace: Pterocaulon sp. A Kimberley Flora (B.J.Carter 599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. broad petals (S.D. Hopper 4429) - replace: Pterostylis sp. broad petals (S.D.Hopper 4429) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Arid (G. Brockman GBB 263) replace: Pterostylis sp. Cape Arid (G.Brockman GBB 263) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Cape Le Grand (I. Solomon 550) replace: Pterostylis sp. Cape Le Grand (I.Solomon 550) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis sp. Helena River (G. Brockman GBB 340) + replace: Pterostylis sp. Helena River (G.Brockman GBB 340) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Karri forest (W. Jackson BJ270) + replace: Pterostylis sp. Karri forest (W.Jackson BJ270) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Northampton (S.D. Hopper 3349) + replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) + replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) + replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) + replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Pterostylis sp. broad petals (S.D. Hopper 4429) + replace: Pterostylis sp. broad petals (S.D.Hopper 4429) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Pterostylis sp. cauline leaves (N. Gibson & M.N. Lyons 1490) replace: Pterostylis sp. cauline leaves (N.Gibson & M.N.Lyons 1490) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. clubbed snail orchid (R. Davis 8088) replace: Pterostylis sp. clubbed snail orchid (R.Davis 8088) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. crinkled leaf (G.J. Keighery 13426) replace: Pterostylis sp. crinkled leaf (G.J.Keighery 13426) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. dainty brown (N. Gibson & M. Lyons 3690) replace: Pterostylis sp. dainty brown (N.Gibson & M.Lyons 3690) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. elegant snail orchid (G. Brockman GBB 1194) replace: Pterostylis sp. elegant snail orchid (G.Brockman GBB 1194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. exserted labellum (A.C. Beauglehole 12194) replace: Pterostylis sp. exserted labellum (A.C.Beauglehole 12194) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. extended dorsal sepal (G. Paull 731) replace: Pterostylis sp. extended dorsal sepal (G.Paull 731) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. fragile (S. Barrett 553) replace: Pterostylis sp. fragile (S.Barrett 553) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. granite (W. Jackson BJ351) replace: Pterostylis sp. granite (W.Jackson BJ351) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Helena River (G. Brockman GBB 340) - replace: Pterostylis sp. Helena River (G.Brockman GBB 340) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. inland (A.C. Beauglehole 11880) replace: Pterostylis sp. inland (A.C.Beauglehole 11880) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Karri forest (W. Jackson BJ270) - replace: Pterostylis sp. Karri forest (W.Jackson BJ270) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. late flowering (W. Jackson BJ298) replace: Pterostylis sp. late flowering (W.Jackson BJ298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. limestone (B.J. Keighery & G.J. Keighery 65) replace: Pterostylis sp. limestone (B.J.Keighery & G.J.Keighery 65) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. mid-west coast (G. Brockman GBB134) replace: Pterostylis sp. mid-west coast (G.Brockman GBB134) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. miniature (J.R. Wheeler 3298) replace: Pterostylis sp. miniature (J.R.Wheeler 3298) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Northampton (S.D. Hopper 3349) - replace: Pterostylis sp. (Northampton) S.D.Hopper 3349 - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Ongerup (K.R. Newbey 4874) - replace: Pterostylis sp. Ongerup (K.R.Newbey 4874) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. red flowered (W. Jackson BJ269) replace: Pterostylis sp. red flowered (W.Jackson BJ269) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. robust (W. Jackson BJ294) replace: Pterostylis sp. robust (W.Jackson BJ294) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. scooped sepals (G. Brockman GBB386) replace: Pterostylis sp. scooped sepals (G.Brockman GBB386) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. short sepals (W. Jackson BJ259) replace: Pterostylis sp. short sepals (W.Jackson BJ259) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Slender Snail Orchid (G.J. Keighery 14516) - replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. small stature (W. Jackson BJ303) replace: Pterostylis sp. small stature (W.Jackson BJ303) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Pterostylis sp. Southern Granites (W. Jackson BJ256) - replace: Pterostylis sp. Southern Granites (W.Jackson BJ256) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. striped sepal greenhood (G. Brockman GBB355) replace: Pterostylis sp. striped sepal greenhood (G.Brockman GBB355) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. yellow eared (W. Jackson BJ359) replace: Pterostylis sp. yellow eared (W.Jackson BJ359) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus humilis subsp. humilis replace: Ptilotus humilis var. humilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus humilis subsp. parviflorus replace: Ptilotus humilis var. parviflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ptilotus sp. Beaufort River (G.J. Keighery 16554) replace: Ptilotus sp. Beaufort River (G.J.Keighery 16554) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Burnerbinmah (S. Patrick 2787) replace: Ptilotus sp. Burnerbinmah (S.Patrick 2787) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Mt Narryer (A.S. George 17484) replace: Ptilotus sp. Mt Narryer (A.S.George 17484) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Northampton (R. Davis 10952) replace: Ptilotus sp. Northampton (R.Davis 10952) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sp. Porongurup (R. Davis 10805) replace: Ptilotus sp. Porongurup (R.Davis 10805) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Puccinellia sp. Warren Road (M.N. Lyons 2710) replace: Puccinellia sp. Warren Road (M.N.Lyons 2710) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Kundip (G.F. Craig 6008) replace: Pultenaea sp. Kundip (G.F.Craig 6008) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (J.S. Beard 7827) replace: Pultenaea sp. Mt Lesueur (J.S.Beard 7827) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. Mt Lesueur (L.A. Orthia 86) replace: Pultenaea sp. Mt Lesueur (L.A.Orthia 86) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea sp. southern (L.A. Orthia 39) replace: Pultenaea sp. southern (L.A.Orthia 39) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhagodia sp. Watheroo (R.J. Cranfield & P.J. Spencer 8183) replace: Rhagodia sp. Watheroo (R.J.Cranfield & P.J.Spencer 8183) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe pollackii replace: Rhodanthe polakii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodanthe sp. Overlander (P.S. Short 2096) replace: Rhodanthe sp. Overlander (P.S.Short 2096) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. A Kimberley Flora (C.R. Dunlop 5329) replace: Rhynchospora sp. A Kimberley Flora (C.R.Dunlop 5329) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhynchospora sp. B Kimberley Flora (A.S. Weston 12363) replace: Rhynchospora sp. B Kimberley Flora (A.S.Weston 12363) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x moschata replace: Rosa chinensis x Rosa moschata reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rosa chinensis x multiflora replace: Rosa chinensis x Rosa multiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus loganobaccus replace: Rubus loganubaccus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus xloganobaccus replace: Rubus x loganobaccus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruellia sp. A Kimberley Flora (K.F. Kenneally 9007) replace: Ruellia sp. A Kimberley Flora (K.F.Kenneally 9007) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia apella replace: Rulingia apella MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rulingia sp. Trigwell Bridge (R. Smith s.n. 20.6.89) replace: Rulingia sp. Trigwell Bridge (R.Smith s.n. 20.6.1989) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xjohannis-moorei replace: Rumex x johannis-moorei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xmuretii replace: Rumex x muretii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpratensis replace: Rumex x pratensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xpseudopulcher replace: Rumex x pseudopulcher reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rumex xschultzei replace: Rumex x schultzei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia xmolesta replace: Salvinia x molesta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Millstream (M.I.H. Brooker 2076) replace: Samolus sp. Millstream (M.I.H.Brooker 2076) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Samolus sp. Shark Bay (M.E. Trudgen 7410) replace: Samolus sp. Shark Bay (M.E.Trudgen 7410) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sauropus sp. Woolgorong (M. Officer s.n. 10/8/94) replace: Sauropus sp. Woolgorong (M.Officer s.n. 10/8/94) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola humifusa de replace: Scaevola humifusa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de replace: Scaevola repens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola repens de var. repens replace: Scaevola repens var. repens reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola repens subsp. Northern Sandplains replace: Scaevola repens subsp. Northern Sandplains (R.J.Cranfield & P.J.Spencer 8445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Scaevola repens var. angustifolia de replace: Scaevola repens var. angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Scaevola sp. Hamersley Range basalts (S. van Leeuwen 3675) replace: Scaevola sp. Hamersley Range basalts (S.van Leeuwen 3675) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scaevola sp. Lake Cairlocup (K. Newbey 9834) replace: Scaevola sp. Lake Cairlocup (K.Newbey 9834) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sesquispiculus replace: Schoenus sesquispicula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A1 Boorabbin (K.L. Wilson 2581) replace: Schoenus sp. A1 Boorabbin (K.L.Wilson 2581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A2 Kulin (B.G. Briggs 7939) replace: Schoenus sp. A2 Kulin (B.G.Briggs 7939) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. A3 Ciliate Sheaths (K.R. Newbey 9402) replace: Schoenus sp. A3 Ciliate Sheaths (K.R.Newbey 9402) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Beaufort (G.J. Keighery 6291) replace: Schoenus sp. [Schoenus sp. Beaufort (G.J. Keighery 6291); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -4208,176 +4235,176 @@ taxonomic_updates: - find: Schoenus sp. Bullsbrook (J.J. Alford 915) replace: Schoenus sp. Bullsbrook (J.J.Alford 915) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Cape Riche Cushion (G.J. Keighery 9922) replace: Schoenus sp. Cape Riche Cushion (G.J.Keighery 9922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Eneabba (F. Obbens & C. Godden I154) replace: Schoenus sp. Eneabba (F.Obbens & C.Godden I154) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. G Broad Sheath (K.L. Wilson 2633) replace: Schoenus sp. G Broad Sheath (K.L.Wilson 2633) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grassy (E. Gude & J. Harvey 250) replace: Schoenus sp. Grassy (E.Gude & J.Harvey 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Grey Rhizome (K.L. Wilson 2922) replace: Schoenus sp. Grey Rhizome (K.L.Wilson 2922) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Jindong (R.D. Royce 2485) replace: Schoenus sp. Jindong (R.D.Royce 2485) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Kalbarri (K.R. Newbey 9352) replace: Schoenus sp. Kalbarri (K.R.Newbey 9352) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Mt Barker (G.J. Keighery 9679) replace: Schoenus sp. Mt Barker (G.J.Keighery 9679) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Murchison (K.L. Wilson 2647) replace: Schoenus sp. Murchison (K.L.Wilson 2647) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Schoenus sp. smooth culms (K.R. Newbey 7823) - replace: Schoenus sp. smooth culms (Newbey 7823) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Stirling (G.J. Keighery 3427) replace: Schoenus sp. Stirling (G.J.Keighery 3427) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Toodyay (G.J. Keighery & N. Gibson 2918) replace: Schoenus sp. Toodyay (G.J.Keighery & N.Gibson 2918) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Waroona (G.J. Keighery 12235) replace: Schoenus sp. Waroona (G.J.Keighery 12235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Schoenus sp. smooth culms (K.R. Newbey 7823) + replace: Schoenus sp. smooth culms (Newbey 7823) + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-21) + taxonomic_resolution: species - find: Schoenus subflavus subsp. hispid culms replace: Schoenus subflavus subsp. hispid culms (K.R.Newbey 8278) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. long leaves replace: Schoenus subflavus subsp. long leaves (K.L.Wilson 2865) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. subflavus replace: Schoenus subflavus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ajana (T.A. Halliday 137) replace: Scholtzia sp. Ajana (T.A.Halliday 137) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu (M.E. Trudgen 2218) replace: Scholtzia sp. Binnu (M.E.Trudgen 2218) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Binnu East Road (M.E. Trudgen 12013) replace: Scholtzia sp. Binnu East Road (M.E.Trudgen 12013) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. East Yuna (A.C. Burns 6) replace: Scholtzia sp. East Yuna (A.C.Burns 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eneabba (S. Maley 8) replace: Scholtzia sp. Eneabba (S.Maley 8) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eradu (R.D. Royce 8016) replace: Scholtzia sp. Eradu (R.D.Royce 8016) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Eurardy (J.S. Beard 6886) replace: Scholtzia sp. Eurardy (J.S.Beard 6886) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Folly Hill (M.E. Trudgen 12097) replace: Scholtzia sp. Folly Hill (M.E.Trudgen 12097) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Galena (W.E. Blackall 4728) replace: Scholtzia sp. Galena (W.E.Blackall 4728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Geraldton (F. Lullfitz L 3216) replace: Scholtzia sp. Geraldton (F.Lullfitz L 3216) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Gunyidi (J.D. Briggs 1721) replace: Scholtzia sp. Gunyidi (J.D.Briggs 1721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kalbarri (N. Hoyle 623) replace: Scholtzia sp. Kalbarri (N.Hoyle 623) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Kojarena (A.M. Ashby 1904) replace: Scholtzia sp. Kojarena (A.M.Ashby 1904) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Murchison River (A.S. George 7098) replace: Scholtzia sp. Murchison River (A.S.George 7908) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Northampton (A. Strid 20714) replace: Scholtzia sp. Northampton (A.Strid 20174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Prowaka Springs (R.J. Cranfield & P. Spencer 8083) replace: Scholtzia sp. Prowaka Springs (R.J.Cranfield & P.Spencer RJC 8083) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Red Bluff (A. Gunness 2373) replace: Scholtzia sp. Red Bluff (A.Gunness 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Ross Graham Lookout (S. Maley 6) replace: Scholtzia sp. Ross Graham Lookout (S.Maley 6) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Shark Bay (M.E. Trudgen 7429) replace: Scholtzia sp. Shark Bay (M.E.Trudgen 7429) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S. Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Valentine Road (S.J.Patrick 2142) replace: Scholtzia sp. Valentine Road (S.Patrick 2142) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Whelarra (M.E. Trudgen 12018) replace: Scholtzia sp. Whelarra (M.E.Trudgen 12018) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scholtzia sp. Yandanooka (R. Soullier 646) replace: Scholtzia sp. Yandanooka (R.Soullier 646) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. B Kimberley Flora (C.R. Dunlop 5409) replace: Scleria sp. B Kimberley Flora (C.R.Dunlop 5409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Scleria sp. C Kimberley Flora (K.F. Kenneally 4873) replace: Scleria sp. C Kimberley Flora (K.F.Kenneally 4873) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437) replace: Sclerolaena sp. [Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437); WAH_2022_2] @@ -4387,100 +4414,96 @@ taxonomic_updates: - find: Sclerolaena xgeorgei replace: Sclerolaena georgei reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xartemisioides replace: Senna artemisioides subsp. x artemisioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xcoriacea replace: Senna artemisioides subsp. x coriacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. xsturtii replace: Senna artemisioides subsp. x sturtii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna glutinosa subsp. xluerssenii replace: Senna glutinosa subsp. x luerssenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna sp. Austin (A. Strid 20210) replace: Senna sp. Austin (A.Strid 20210) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Billabong (J.D. Alonzo 721) replace: Senna sp. Billabong (J.D.Alonzo 721) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Karijini (M.E. Trudgen 10392) replace: Senna sp. Karijini (M.E.Trudgen 10392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Meekatharra (E. Bailey 1-26) replace: Senna sp. Meekatharra (E.Bailey 1-26) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna sp. Tamala (M.E. Trudgen 7334A) replace: Senna sp. Tamala (M.E.Trudgen 7334A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. A Kimberley Flora (P.A. Fryxell & L.A. Craven 3900) replace: Sida sp. A Kimberley Flora (P.A.Fryxell & L.A.Craven 3900) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Articulation below (A.A. Mitchell PRP 1605) replace: Sida sp. Articulation below (A.A.Mitchell PRP1605) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Barlee Range (S. van Leeuwen 1642) replace: Sida sp. Barlee Range (S.van Leeuwen 1642) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Bungle Bungles (M.I. Blackwell 219) replace: Sida sp. Bungle Bungles (M.I.Blackwell 219) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C Kimberley Flora (T.E.H. Aplin 4982) replace: Sida sp. C Kimberley Flora (T.E.H.Aplin 4982) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Carnarvon (P.S. Short 2492) replace: Sida sp. Carnarvon (P.S.Short 2492) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. dark green fruits (S. van Leeuwen 2260) - replace: Sida sp. dark green fruits (S.van Leeuwen 2260) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Excedentifolia (J.L. Egan 1925) replace: Sida sp. Excedentifolia (J.L.Egan 1925) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces glabrous (H.N. Foote 32) replace: Sida sp. golden calyces glabrous (H.N.Foote 32) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Golden calyces pubescent (G.J. Leach 1966) replace: Sida sp. Golden calyces pubescent (G.J.Leach 1966) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Hamersley Range (K. Newbey 10692) replace: Sida sp. Hamersley Range (K.Newbey 10692) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. L (A.M. Ashby 4202) replace: Sida sp. L (A.M.Ashby 4202) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (A.A. Mitchell PRP 1543) replace: Sida sp. Pilbara (A.A.Mitchell PRP1543) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (S. van Leeuwen 4377) replace: Sida sp. [Sida sp. Pilbara (S. van Leeuwen 4377); WAH_2022_2] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -4489,129 +4512,133 @@ taxonomic_updates: - find: Sida sp. Pindar (A. Mitchell 3585) replace: Sida sp. Pindar (A.A.Mitchell 3585) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Rabbit Flat (B.J. Carter 626) replace: Sida sp. Rabbit Flat (B.J.Carter 626) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) - replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Shovelanna Hill (S. van Leeuwen 3842) replace: Sida sp. Shovelanna Hill (S.van Leeuwen 3842) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. Supplejack Station (T.S. Henshall 2345) + replace: Sida sp. Supplejack Station (T.S.Henshall 2345) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Watarrka (D.E. Albrecht 8672) + replace: Sida sp. Watarrka (D.E.Albrecht 8672) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. Western sand dunes (P.K. Latz 11980) + replace: Sida sp. Western sand dunes (P.K.Latz 11980) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. dark green fruits (S. van Leeuwen 2260) + replace: Sida sp. dark green fruits (S.van Leeuwen 2260) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Sida sp. sand dunes (A.A. Mitchell PRP1208) + replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/1990) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. spiciform panicles (E. Leyland s.n. 14/8/90) replace: Sida sp. spiciform panicles (E.Leyland s.n. 14/8/1990) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Supplejack Station (T.S. Henshall 2345) - replace: Sida sp. Supplejack Station (T.S.Henshall 2345) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. tiny glabrous fruit (A.A. Mitchell PRP1152) replace: Sida sp. tiny glabrous fruit (A.A.Mitchell PRP1152) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. verrucose glands (F.H. Mollemans 2423) replace: Sida sp. verrucose glands (F.H.Mollemans 2423) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Watarrka (D.E. Albrecht 8672) - replace: Sida sp. Watarrka (D.E.Albrecht 8672) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Sida sp. Western sand dunes (P.K. Latz 11980) - replace: Sida sp. Western sand dunes (P.K.Latz 11980) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum sp. Boomerang Bay (K.F. Kenneally 10021) replace: Solanum sp. Boomerang Bay (K.F.Kenneally 10021) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum bicolor subsp. xdrummondii replace: Sorghum bicolor reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sorghum xalmum replace: Sorghum x almum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spergularia sp. 5 Leeman (G.J. Keighery & J.J. Alford 488) replace: Spergularia sp. 5 Leeman (G.J.Keighery & J.J.Alford 488) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphenotoma sp. Stirling Range (P.G. Wilson 4235) replace: Sphenotoma sp. Stirling Range (P.G.Wilson 4235) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spinifex xalterniflorus replace: Spinifex x alterniflorus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia muricata subsp. annual replace: Stackhousia muricata subsp. Annual (W.R.Barker 2172) reason: Manual alignment with canonical subspecies name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Stackhousia sp. swollen gynophore (W.R. Barker 2041) replace: Stackhousia sp. Swollen gynophore (W.R.Barker 2041) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Battle Hill (A.L. Payne 1006) replace: Stemodia sp. Battle Hill (A.L.Payne 1006) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stemodia sp. Onslow (A.A. Mitchell 76/148) replace: Stemodia sp. Onslow (A.A.Mitchell 76/148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium egralliforme replace: Stylidium egralliforme MS reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Bindoon (K.F. Kenneally 11405) replace: Stylidium sp. Bindoon (K.F.Kenneally 11405) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Boulder Rock (A.H. Burbidge 2536) replace: Stylidium sp. Boulder Rock (A.H.Burbidge 2536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Dewars Pool (K.F. Kenneally 11400) replace: Stylidium sp. Dewars Pool (K.F.Kenneally 11400) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Kalbarri (A. Carr 145) replace: Stylidium sp. Kalbarri (A.Carr 145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker (E.J. Croxford 1906) replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Hamersley Station (A.A. Mitchell 196) replace: Swainsona sp. Hamersley Station (A.A.Mitchell 196) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Swainsona sp. Shark Bay (M.E. Trudgen 7588) replace: Swainsona sp. Shark Bay (M.E.Trudgen 7588) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Fairbridge Farm (D. Papenfus 696) replace: Synaphea sp. Fairbridge Farm (D.Papenfus 696) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Jilakin Flat Rocks Rd (R. Butcher et. al RB200) replace: Synaphea sp. Jilakin Flat Rocks Rd (R.Butcher et al. RB200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Kwornicup (D. Trenowden 429) replace: Synaphea sp. [Synaphea sp. Kwornicup (D.Trenowden 429); WAH_2022_2] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -4625,7 +4652,7 @@ taxonomic_updates: - find: Synaphea sp. Pinjarra (R. Davis 6578) replace: Synaphea sp. Pinjarra (R.Davis 6578) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Pinjarra Plain (A.S. George 17182) replace: Synaphea sp. [Synaphea sp. Pinjarra Plain (A.S. George 17182)] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -4634,7 +4661,7 @@ taxonomic_updates: - find: Synaphea sp. Redgate Road (J. Scott 16) replace: Synaphea sp. Redgate Road (J.Scott 16) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Woodanilling (G.J. Keighery & N. Gibson 4614) replace: Synaphea sp. [Synaphea sp. Woodanilling (G.J. Keighery & N. Gibson 4614); WAH_2022_2] @@ -4649,352 +4676,352 @@ taxonomic_updates: - find: Tecticornia mellaria replace: Tecticornia mellarium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Gunyidi (M.N. Lyons 2607) replace: Tecticornia sp. Gunyidi (M.N.Lyons 2607) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp. Roy Hill (H. Pringle 62) replace: Tecticornia sp. Roy Hill (H.Pringle 62) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species -- find: Tephrosia rosea var. glabrior - replace: Tephrosia rosea var. glabrior MS - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species - find: Tephrosia rosea var. Napier Range replace: Tephrosia rosea var. Napier Range (C.R.Dunlop 7760 & B.K.Simon) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Tephrosia rosea var. glabrior + replace: Tephrosia rosea var. glabrior MS + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) + taxonomic_resolution: varietas - find: Tephrosia rosea var. venulosa replace: Tephrosia rosea var. venulosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia sp. B Kimberley Flora (C.A. Gardner 7300) replace: Tephrosia sp. B Kimberley Flora (C.A.Gardner 7300) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Bungaroo Creek (M.E. Trudgen 11601) replace: Tephrosia sp. Bungaroo Creek (M.E.Trudgen 11601) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. C Kimberley Flora (K.F. Kenneally 5599) replace: Tephrosia sp. C Kimberley Flora (K.F.Kenneally 5599) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Carnarvon (J.H. Ross 2681) replace: Tephrosia sp. Carnarvon (J.H.Ross 2681) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Cathedral Gorge (F.H. Mollemans 2420) replace: Tephrosia sp. Cathedral Gorge (F.H.Mollemans 2420) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Central (P.K. Latz 17037) replace: Tephrosia sp. Central (P.K.Latz 17037) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) - replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. D Kimberley Flora (R.D. Royce 1848) replace: Tephrosia sp. D Kimberley Flora (R.D.Royce 1848) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. deserts (J.R. Maconochie 1403) - replace: Tephrosia sp. deserts (J.R.Maconochie 1403) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Dunes (J.R. Maconochie 938) replace: Tephrosia sp. Dunes (J.R.Maconochie 938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Durack River (C.A. Gardner 9938) replace: Tephrosia sp. Durack River (C.A.Gardner 9938) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. E Kimberley Flora (C.A. Gardner 9937) replace: Tephrosia sp. E Kimberley Flora (C.A.Gardner 9937) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. F Kimberley Flora (B.R. Maslin 5139) replace: Tephrosia sp. F Kimberley Flora (B.R.Maslin 5139) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. G Kimberley Flora (G.J. Keighery 4828) replace: Tephrosia sp. G Kimberley Flora (G.J.Keighery 4828) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kennedy Range (J.S. Beard 4392) replace: Tephrosia sp. Kennedy Range (J.S.Beard 4392) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Kununurra (T. Handasyde TH00 250) replace: Tephrosia sp. Kununurra (T.Handesyde TH00 250) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Magazine Hill (P. Jones 365) replace: Tephrosia sp. Magazine Hill (P.Jones 365) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Mistake Creek (A.C. Beauglehole 54424) replace: Tephrosia sp. Mistake Creek (A.C.Beauglehole 54424) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) + replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tephrosia sp. Newman (A.A. Mitchell PRP 29) replace: Tephrosia sp. Newman (A.A.Mitchell PRP 29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Northern (K.F. Kenneally 11950) replace: Tephrosia sp. Northern (K.F.Kenneally 11950) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. NW Eremaean (S. van Leeuwen et al. PBS 0356) - replace: Tephrosia sp. NW Eremaean (S.van Leeuwen et al. PBS 0356) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Onslow (K.R. Newbey 10571) replace: Tephrosia sp. Onslow (K.R.Newbey 10571) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Pentecost River (I.D. Cowie 4168) replace: Tephrosia sp. Pentecost River (I.D.Cowie 4168) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Saw Ranges (D. Kabay s.n. PERTH 06720544) replace: Tephrosia sp. Saw Ranges (D.Kabay s.n. PERTH 06720544) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) - replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tephrosia sp. Willowra (G.M. Chippendale 4809) replace: Tephrosia sp. Willowra (G.M.Chippendale 4809) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Tephrosia sp. clay soils (S. van Leeuwen et al. PBS 0273) + replace: Tephrosia sp. Clay soils (S.van Leeuwen et al. PBS 0273) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. deserts (J.R. Maconochie 1403) + replace: Tephrosia sp. deserts (J.R.Maconochie 1403) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species +- find: Tephrosia sp. sparse pinnae (C.R. Michel 2202) + replace: Tephrosia sp. Sparse pinnae (C.R.Michel 2202) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Tetratheca sp. Granite (S. Patrick SP1224) replace: Tetratheca sp. Granite (S.Patrick SP1224) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Kent River (B.G. Hammersley 1791) replace: Tetratheca sp. Kent River (B.G.Hammersley 1791) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca sp. Mt Solus (F. Obbens 307/98) replace: Tetratheca sp. Mt Solus (F.Obbens 307/98) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium fililobum subsp. fililobum replace: Teucrium fililobum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium fililobum subsp. glandular replace: Teucrium fililobum subsp. glandular (W.Rogerson 233) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium sp. Balladonia (K.R. Newbey 7380) replace: Teucrium sp. Balladonia (K.R.Newbey 7380) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Teucrium sp. dwarf (R. Davis 8813) - replace: Teucrium sp. dwarf (R.Davis 8813) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Norseman (T.E.H. Aplin 1851) replace: Teucrium sp. Norseman (T.E.H.Aplin 1851) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. Sturt Creek (A.A. Mitchell 5536) replace: Teucrium sp. Sturt Creek (A.A.Mitchell 5536) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Teucrium sp. dwarf (R. Davis 8813) + replace: Teucrium sp. dwarf (R.Davis 8813) + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) + taxonomic_resolution: species - find: Thelymitra sp. Brookton (A.S. George 11631) replace: Thelymitra sp. Brookton (A.S.George 11631) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Esperance (N.S. Lander 1080) replace: Thelymitra sp. Esperance (N.S.Lander 1080) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Slender Sun Orchid (A.R. Annels 2884) replace: Thelymitra sp. Slender Sun Orchid (A.R.Annels 2884) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Hamersley Station (M.E. Trudgen 11431) replace: Themeda sp. Hamersley Station (M.E.Trudgen 11431) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Themeda sp. Mt Barricade (M.E. Trudgen 2471) replace: Themeda sp. Mt Barricade (M.E.Trudgen 2471) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia purpurea x solanacea replace: Thomasia purpurea x Thomasia solanacea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Arthur River (H.F. & M. Broadbent 1409) replace: Thomasia sp. Arthur River (H.F. & M.Broadbent 1409) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Big Brook (M. Koch 2373) replace: Thomasia sp. Big Brook (M.Koch 2373) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Gingin (F. & J. Hort 1511) replace: Thomasia sp. Gingin (F. & J.Hort 1511) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Green Hill (S. Paust 1322) replace: Thomasia sp. Green Hill (S.Paust 1322) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Lesueur (M. Hislop 4217) replace: Thomasia sp. Lesueur (M.Hislop 4217) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Merredin (M.B. Mills 11) replace: Thomasia sp. Merredin (M.B.Mills 11) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Salmon Gums (C.A. Gardner s.n. PERTH 02708639) replace: Thomasia sp. Salmon Gums (C.A.Gardner s.n. PERTH 02708639) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Toolbrunup (G.J. Keighery 9895) replace: Thomasia sp. Toolbrunup (G.J.Keighery 9895) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Vasse (C. Wilkins & K. Shepherd CW 581) replace: Thomasia sp. Vasse (C.Wilkins & K.Shepherd CW581) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia xformosa replace: Thomasia x formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene glaucosa replace: Thryptomene glaucosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene ninghanensis replace: Thryptomene sp. Wandana (M.E.Trudgen 22016) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Carrarang (M.E. Trudgen 7420) replace: Thryptomene sp. Carrarang (M.E.Trudgen 7420) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eagle Gorge (A.G. Gunness 2360) replace: Thryptomene sp. Eagle Gorge (A.G.Gunness 2360) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. East Yuna (J.W. Green 4639) replace: Thryptomene sp. East Yuna (J.W.Green 4639) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eneabba (R.J. Cranfield 8433) replace: Thryptomene sp. Eneabba (R.J.Cranfield 8433) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Eurardy (D. & B. Bellairs 1649) replace: Thryptomene sp. Eurardy (D. & B.Bellairs 1649) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Geraldton (H. Demarz 5145) replace: Thryptomene sp. Geraldton (H.Demarz 5145) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Lancelin (M.E. Trudgen 14000) replace: Thryptomene sp. Lancelin (M.E.Trudgen 14000) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Moresby Range (A.S. George 14873) replace: Thryptomene sp. Moresby Range (A.S.George 14873) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Steep Point (M.E. Trudgen 7421) replace: Thryptomene sp. Steep Point (M.E.Trudgen 7421) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Tamala (M.E. Trudgen 7384) replace: Thryptomene sp. Tamala (M.E.Trudgen 7384) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene sp. Yuna Reserve (A.C. Burns 100) replace: Thryptomene sp. Yuna Reserve (A.C.Burns 100) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Badgingarra (E.A. Griffin 2511) replace: Thysanotus sp. Badgingarra (E.A.Griffin 2511) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Desert East of Newman (R.P. Hart 964) replace: Thysanotus sp. Desert East of Newman (R.P.Hart 964) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Eremaean (S. van Leeuwen 1067) replace: Thysanotus sp. Eremaean (S.van Leeuwen 1067) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Great Victoria Desert (A.S. George 8406) replace: Thysanotus sp. Great Victoria Desert (A.S.George 8406) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Kalbarri (D. & B. Bellairs 1523 A) replace: Thysanotus sp. Kalbarri (D. & B.Bellairs 1523 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp. Twining Wheatbelt (N.H. Brittan 81/29) replace: Thysanotus sp. Twining Wheatbelt (N.H.Brittan 81/29) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trianthema oxycalyptra var. oxycalyptra replace: Trianthema oxycalyptrum var. oxycalyptrum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tribonanthes sp. Lake Muir (G.J. Keighery & N. Gibson 2134) replace: Tribonanthes sp. Lake Muir (G.J.Keighery & N.Gibson 2134) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Koolan Island (K.F. Kenneally 8278) replace: Tribulopis sp. Koolan Island (K.F.Kenneally 8728) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulopis sp. Mitchell Plateau (K.F. Kenneally 7935) replace: Tribulopis sp. Mitchell Plateau (K.F.Kenneally 7935) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. long-styled eichlerianus (A.S. George 10666) replace: Tribulus sp. long-styled eichlerianus (A.S.George 10666) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tribulus sp. saline flats (P.K. Latz 4530) replace: Tribulus sp. saline flats (P.K.Latz 4530) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichanthodium exile replace: Trichanthodium exilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Trichocline sp. Treeton (B.J. Keighery & N. Gibson 564) replace: Trichocline sp. Treeton (B.J.Keighery & N.Gibson 564) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Eneabba (E.A. Griffin 1200) replace: Tricoryne sp. Eneabba (E.A.Griffin 1200) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Geraldton (G.J. Keighery 10461) replace: Tricoryne sp. Geraldton (G.J.Keighery 10461) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211) replace: Tricoryne sp. [Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211); WAH_2022_2] @@ -5004,154 +5031,127 @@ taxonomic_updates: - find: Tricoryne sp. Kimberley (K.F. Kenneally 4857) replace: Tricoryne sp. Kimberley (K.F.Kenneally 4857) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Morawa (G.J. Keighery & N. Gibson 6759) replace: Tricoryne sp. Morawa (G.J.Keighery & N.Gibson 6759) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Mullewa (G.J. Keighery 12080) replace: Tricoryne sp. Mullewa (G.J.Keighery 12080) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. South Coast (T.E.H. Aplin 2653) replace: Tricoryne sp. South Coast (T.E.H.Aplin 2653) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Wongan Hills (B.H. Smith 794) replace: Tricoryne sp. Wongan Hills (B.H.Smith 794) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. A Flora of Australia (G.J. Keighery 2477) replace: Triglochin sp. A Flora of Australia (G.J.Keighery 2477) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. B Flora of Australia (P.G. Wilson 4294) replace: Triglochin sp. B Flora of Australia (P.G.Wilson 4294) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin sp. C Flora of Australia (P.G. Wilson 8811) replace: Triglochin sp. C Flora of Australia (P.G.Wilson 8811) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triodia sp. Mt Ella (M.E. Trudgen 12739) replace: Triodia sp. Mt Ella (M.E.Trudgen 12739) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Adolphus Island (K.F. Kenneally 11898) replace: Triumfetta sp. Adolphus Island (KF.Kenneally 11898) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triumfetta sp. Mt Bomford (M.D. Barrett MDB 1001) replace: Triumfetta sp. Mt Bomford (M.D.Barrett MDB 1001) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Typhonium sp. Kununurra (A.N. Start ANS 1467) replace: Typhonium sp. Kununurra (A.N.Start ANS 1467) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Galena (G.J. Keighery 14733) replace: Urodon sp. Galena (G.L.Keighery 14733) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urodon sp. Narkal (B.H. Smith 1440) replace: Urodon sp. Narkal (B.H.Smith 1440) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia plumosa var. ananeotes x vassensis replace: Verticordia plumosa [Verticordia plumosa var. ananeotes x vassensis; WAH_2022_2] reason: Manual match to species, ignoring infraspecific information (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia serrata var. Udumung replace: Verticordia serrata var. Udumung (D.Hunter & B.Yarran 941006) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Verticordia staminosa subsp. cylindracea var. cylindracea replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Verticordia staminosa subsp. cylindracea var. erecta replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Verticordia xeurardyensis replace: Verticordia x eurardyensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. Hamersley Clay (A.A. Mitchell PRP 113) replace: Vigna sp. Hamersley Clay (A.A.Mitchell PRP 113) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vigna sp. northern pubescent (A.A. Mitchell 3667) replace: Vigna sp. northern pubescent (A.A.Mitchell 3667) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia sp. A Kimberley Flora (R.J. Cranfield 6527) replace: Vittadinia sp. A Kimberley Flora (R.J.Cranfield 6527) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia preissii de replace: Wahlenbergia preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wedelia sp. Hamersley (A.S. Weston 8444) replace: Wedelia sp. Hamersley (A.S.Weston 8444) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Cranbrook (A.R. Annels 3819) replace: Wurmbea sp. Cranbrook (A.R.Annels 3819) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wurmbea sp. Great Victoria Desert (G.J. Keighery 7501) replace: Wurmbea sp. Great Victoria Desert (G.J.Keighery 7501) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosia sp. Dardanup (B.J. Keighery & N. Gibson 174) replace: Xanthosia sp. Dardanup (B.J.Keighery & N.Gibson 174) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: xCyanthera glossodioides - replace: X Cyanthera glossodioides - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zornia sp. West Kimberley (C.A. Gardner 9942) replace: Zornia sp. West Kimberley (C.A.Gardner 9942) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Baumea preissii subsp. preissii - replace: Baumea preissii - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Boronia crenulata 'Shark Bay' - replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Subspecies -- find: Meeboldina decipiens subsp. decipiens - replace: Meeboldina decipiens MS - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Eucalyptus x erectifolia - replace: Eucalyptus erectifolia - reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Lambertia orbifolia subsp. orbifolia ms - replace: Lambertia orbifolia subsp. orbifolia MS - reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species -- find: Leucopogon sp. Arrino (M. Hislop 2675) - replace: Leucopogon sp. Arrino (M.Hislop 2675) - reason: Manual match with APC accepted name (E. Wenk, 2023-05-24) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: xCyanthera glossodioides + replace: X Cyanthera glossodioides + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Ecklonia radiata, Asparagopsis taxiformis, Caulerpa distichophylla, Caulerpa diff --git a/data/Warren_2005/metadata.yml b/data/Warren_2005/metadata.yml index f2f82b19a..7de371d78 100644 --- a/data/Warren_2005/metadata.yml +++ b/data/Warren_2005/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(site_name = "goldfields area of central Victoria") + custom_R_code: data %>% mutate(site_name = "goldfields area of central Victoria") collection_date: 2003/2003 taxon_name: species_name location_name: site_name @@ -444,7 +444,7 @@ taxonomic_updates: replace: Eucalyptus sideroxylon subsp. tricarpa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: photosystem II quantum yield fluorescence measurement diff --git a/data/Warren_2006/metadata.yml b/data/Warren_2006/metadata.yml index 9a438d556..dc9eb4a0c 100644 --- a/data/Warren_2006/metadata.yml +++ b/data/Warren_2006/metadata.yml @@ -22,7 +22,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( `carotenoid_content(mmol g-1)` = `Carot/Chl(mmol mol-1)`*`[Chl](mmol g-1)`/1000, @@ -387,11 +387,11 @@ taxonomic_updates: - find: Eucalyptus badgensis replace: Eucalyptus badjensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus globulus spp globulus replace: Eucalyptus globulus subsp. globulus reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Weerasinghe_2014/metadata.yml b/data/Weerasinghe_2014/metadata.yml index 2d980b6b0..41ca74470 100644 --- a/data/Weerasinghe_2014/metadata.yml +++ b/data/Weerasinghe_2014/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( across(everything(), ~as.character(.x)), @@ -772,23 +772,23 @@ taxonomic_updates: - find: Cryptocarya mackionniana replace: Cryptocarya mackinnoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gillbeea whyapallana replace: Gillbeea whypallana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Licuala ramsayii replace: Licuala ramsayi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myristica globosa spp. meulleri replace: Myristica globosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pseudovaria frogatti replace: Pseuduvaria froggattii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wells_2012/metadata.yml b/data/Wells_2012/metadata.yml index 6f98e5f40..7673a9970 100644 --- a/data/Wells_2012/metadata.yml +++ b/data/Wells_2012/metadata.yml @@ -28,7 +28,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' seedling_traits <- data %>% select(Species, cotsExp, cotsEH, cotsFR, LEE) %>% @@ -1071,43 +1071,43 @@ taxonomic_updates: replace: Alangium villosum subsp. polyosmoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Connarus conchocarpus ssp. conchocarpus replace: Connarus conchocarpus subsp. conchocarpus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Derris sp. (Claudie River L.J.Webb+ 8348) replace: Derris sp. Claudie River (L.J.Webb+ 8348) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus largiflorens ssp. largiflorens replace: Elaeocarpus largiflorens subsp. largiflorens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Myristica globosa ssp. muelleri replace: Myristica globosa subsp. muelleri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Psychotria sp. (Mt Lewis V.K.Moriarty 2445) replace: Psychotria sp. Mt Lewis (V.K.Moriarty 2445) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria sp. (Utchee Creek H.Flecker NQNC5313) replace: Psychotria sp. Utchee Creek (H.Flecker NQNC5313) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloanea australis ssp. parviflora replace: Sloanea australis subsp. parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Steganthera laxiflora ssp. laxiflora replace: Steganthera laxiflora subsp. laxiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Wenk_2022/metadata.yml b/data/Wenk_2022/metadata.yml index f330ce2e3..c77b09a83 100644 --- a/data/Wenk_2022/metadata.yml +++ b/data/Wenk_2022/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% filter(str_detect(taxon_name, " ")) %>% filter(source_details == "APC_accepted") %>% @@ -206,16 +206,45 @@ taxonomic_updates: replace: Abutilon dioicum MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acacia 'H.L.White' + replace: Acacia sp. [Acacia 'H.L.White'; Wenk_2022] + reason: manual alignment to genus (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: genus +- find: Acacia acinacea 'AC01' + replace: Acacia acinacea + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species +- find: Acacia cognata 'BW 06' + replace: Acacia cognata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Acacia fimbriata 'AF001' + replace: Acacia fimbriata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Acacia leprosa 'RBGM 801' + replace: Acacia leprosa + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Acacia pravissima 'NE 02' + replace: Acacia pravissima + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Acacia saligna subsp. saligna replace: Acacia saligna reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. Carson River (M.McDonald MM1890) replace: Acacia sp. Carson River (M.McDonald MM1890) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia sp. China Wall replace: Acacia sp. [Acacia sp. China Wall; NTH_2022] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -231,11 +260,21 @@ taxonomic_updates: reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Acacia spathulifolia 'FlatspathGL' + replace: Acacia spathulifolia + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Adenanthos barbiger subsp. barbiger replace: Adenanthos barbiger reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Adenanthos sericeus 'AdenpurpGL' + replace: Adenanthos sericeus + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Adenanthos sp. Whicher Range (G.J. Keighery 9736) replace: Adenanthos sp. [Adenanthos sp. Whicher Range (G.J. Keighery 9736); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -245,17 +284,17 @@ taxonomic_updates: replace: Alternanthera longipes reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne huegelii var. huegelii replace: Alyogyne huegelii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alyogyne purpurea replace: Alyogyne purpurea MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anemone x hybrida replace: Anemone x [Anemone x hybrida; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -265,31 +304,31 @@ taxonomic_updates: replace: Anigozanthos humilis subsp. Badgingarra (S.D.Hopper 7114) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anigozanthos viridis subsp. Cataby replace: Anigozanthos viridis subsp. Cataby (S.D.Hopper 1786) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum subsp. prostratum var. filiforme replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum subsp. prostratum var. prostratum replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Arisarum vulgare subsp. vulgare replace: Arisarum vulgare reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aristida ramosa x vagans replace: Aristida ramosa x Aristida vagans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropteris beckleri x tenella replace: Arthropteris x [Arthropteris beckleri x tenella; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -303,47 +342,77 @@ taxonomic_updates: - find: Astartea sp. big bracteoles (A. R.Annels 995) replace: Astartea sp. big bracteoles (A.R.Annels 995) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astrebla lappacea '104C' + replace: Astrebla lappacea + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species +- find: Astrebla pectinata '64A' + replace: Astrebla pectinata + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species - find: Atriplex sp. B sensu Jacobs (1990) replace: Atriplex sp. B reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrodolichos errabundus var. errabundus replace: Austrodolichos errabundus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Babingtonia virgata replace: Babingtonia virgata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea crispiflora subsp. Corrigin replace: Baeckea crispiflora subsp. Corrigin (A.S.George 14431) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Kulin replace: Baeckea crispiflora subsp. Kulin (R.Hnatiuk 780026) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea crispiflora subsp. Ongerup replace: Baeckea crispiflora subsp. Ongerup (A.Scougall & C.Garawanta E35) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baeckea sp. Tampia Hill (R.Coveny 8319 & B.Habberley) replace: Baeckea sp. Tampia Hill (J.C.Anway 327) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Banksia integrifolia 'BIT 11' + replace: Banksia integrifolia + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Banksia marginata 'Mt. William Dwarf' + replace: Banksia marginata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Banksia spinulosa 'BC 01' + replace: Banksia spinulosa + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Baumea preissii subsp. preissii replace: Baumea preissii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Boronia crenulata 'Shark Bay' + replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) + reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: subspecies - find: Brachychiton carruthersii replace: Brachychiton sp. [Brachychiton carruthersii; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -353,17 +422,17 @@ taxonomic_updates: replace: Bromus catharticus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Goldfields (K.F.Kenneally 5452) replace: Brunonia sp. Goldfields Goldfields (K.R. Newbey 6044) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brunonia sp. Goldfields (K.R. Newbey 6044) replace: Brunonia sp. Goldfields Goldfields (K.R. Newbey 6044) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Byttneria angulata replace: Commersonia sp. [Byttneria angulata; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -388,35 +457,40 @@ taxonomic_updates: replace: Caladenia catenata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia ensigera replace: Caladenia x ensigera reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. A sensu Harden (1993) replace: Caladenia sp. A reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. grandiflora replace: Calectasia grandiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calectasia grandiflora subsp. southern replace: Calectasia grandiflora subsp. southern (H.Demarz 546) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calytrix acutifolia subsp. acutifolia replace: Calytrix acutifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Casuarina glauca 'CAS01' + replace: Casuarina glauca + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Centaurea sp. A sensu Murray (1992) replace: Centaurea sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centrolepis sp. squamose seeds replace: Centrolepis sp. [Centrolepis sp. squamose seeds; NTH_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -426,46 +500,91 @@ taxonomic_updates: replace: Chamelaucium drummondii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium forrestii subsp. forrestii replace: Chamelaucium forrestii MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chamelaucium pauciflorum subsp. pauciflorum replace: Chamelaucium pauciflorum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cipadessa baccifera replace: Cipadessa baccifera reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Citrus 'Red Centre LIme' + replace: Citrus sp. [Citrus 'Red Centre LIme'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Citrus microcarpa replace: Citrus x microcarpa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Conostylis seorsiflora subsp. Nyabing replace: Conostylis seorsiflora subsp. Nyabing (A.Coates s.n. 2/10/1998) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Cordyline 'Uto01' + replace: Cordyline sp. [Cordyline 'Uto01'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus +- find: Cordyline fruticosa 'BRA01' + replace: Cordyline fruticosa + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Coreopsis biternata replace: Coreopsis biternata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Correa 'C100' + replace: Correa sp. [Correa 'C100'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus +- find: Correa alba 'CR001' + replace: Correa alba + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Correa pulchella 'Wreck of the Ethyl' + replace: Correa pulchella + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Correa reflexa 'Anglesea' + replace: Correa reflexa + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Correa reflexa 'Portland Frost and Lime' + replace: Correa reflexa + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Corybas dowlingii replace: Corybas x dowlingii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Crotalaria spectabilis subsp. spectabilis replace: Crotalaria spectabilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Crowea saligna 'PPCS1' + replace: Crowea saligna + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Cryptocarya macrocarpa replace: Cryptocarya sp. [Cryptocarya macrocarpa; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -480,50 +599,85 @@ taxonomic_updates: replace: Cyperus articulatus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyrtophyllum fragrans replace: Cyrtophyllum fragrans reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dampiera angulata subsp. angulata replace: Dampiera angulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dianella 'Proquest D5' + replace: Dianella sp. [Dianella 'Proquest D5'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Dianella brevicaulis var. nov. (Lake Bolac) replace: Dianella brevicaulis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dianella caerulea 'DBB03' + replace: Dianella caerulea + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Dianella caerulea var. serrulata replace: Dianella caerulea, 'serrulata' variant reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dianella congesta 'DCT500' + replace: Dianella congesta + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Dianella longifolia 'AU22' + replace: Dianella longifolia + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species +- find: Dianella prunina 'DP303' + replace: Dianella prunina + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Dianella revoluta 'DR5000' + replace: Dianella revoluta + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Dianella tasmanica 'TR20' + replace: Dianella tasmanica + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species - find: Dimocarpus leichhardtii replace: Dimocarpus leichhardtii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplocaulobium masonii replace: Diplocaulobium masonii reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dipodium sp. Sandstone (R.L.Barrett & K.W.Dixon 1642) replace: Dipodium sp. Sandstone (R.L.Barrett & K.W.Dixon RLB 1642) reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris polymorpha replace: Diuris x polymorpha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera dilatato-petiolaris replace: Drosera dilatatopetiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Echium pininana x Echium wildpretii replace: Echium x [Echium pininana x Echium wildpretii; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -537,7 +691,7 @@ taxonomic_updates: - find: Epidendrum radicans x secundum hybrid complex replace: Epidendrum radicans x Epidendrum secundum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eragrostis aspera replace: Eragrostis sp. [Eragrostis aspera] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -547,22 +701,32 @@ taxonomic_updates: replace: Eremaea violacea subsp. Dobaderry Swamp (M.E.Trudgen 3909) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eriochilus cucullatus complex replace: Eriochilus cucullatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eriostemon 'J. Semmens' + replace: Eriostemon sp. [Eriostemon 'J. Semmens'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Eryngium pinnatifidum subsp. pinnatifidum replace: Eryngium pinnatifidum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eucalyptus 'EpEm1001' + replace: Eucalyptus sp. [Eucalyptus 'EpEm1001'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Eucalyptus angulosa var. robusta replace: Eucalyptus angulosa var. robusta reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus aspersa x Eucalyptus falcata replace: Eucalyptus x [Eucalyptus aspersa x Eucalyptus falcata; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -587,16 +751,20 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-22) taxonomic_resolution: genus +- find: Eucalyptus cladocalyx 'EUC78' + replace: Eucalyptus cladocalyx [Eucalyptus cladocalyx 'EUC78'] + reason: manual match to canonical name in APC (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: species - find: Eucalyptus communalis replace: Eucalyptus communalis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus kirtoniana replace: Eucalyptus kirtoniana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus loxophleba x Eucalyptus wandoo replace: Eucalyptus x [Eucalyptus loxophleba x Eucalyptus wandoo; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -617,24 +785,34 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-22) taxonomic_resolution: genus +- find: Eucalyptus melliodora 'Rosea' + replace: Eucalyptus melliodora + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Eucalyptus preissiana x Eucalyptus staeri replace: Eucalyptus x [Eucalyptus preissiana x Eucalyptus staeri; Wenk_2022] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-22) taxonomic_resolution: genus +- find: Eucalyptus robusta 'The Green and Gold' + replace: Eucalyptus robusta + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Eucalyptus sp. Eyre (K.Hill & L.A.S Johnson KH 2170) replace: Eucalyptus sp. Eyre (K.Hill & L.A.S. Johnson KH 2170) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. F Kimberley Flora replace: Eucalyptus sp. F reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) replace: Eucalyptus sp. Wagerup (L.Johnson 9127 & B.Briggs) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tasmaniensis replace: Eucalyptus sp. [Eucalyptus tasmaniensis; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -649,12 +827,12 @@ taxonomic_updates: replace: Eucalyptus vegrandis subsp. Fine leaf (P.J.White 452) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus x erectifolia replace: Eucalyptus erectifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euryops virgineus replace: Euryops sp. [Euryops virgineus; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -664,11 +842,16 @@ taxonomic_updates: replace: Eutaxia epacridoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Festulolium loliaceum replace: Festulolium loliaceum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ficus obliqua 'FFV1' + replace: Ficus obliqua + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Fraxinus chinensis replace: Fraxinus sp. [Fraxinus chinensis; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -677,55 +860,75 @@ taxonomic_updates: - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium asperum replace: Gastrolobium asperum MS reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium sp. crenulatum capitate (E. & S. Pignatti 1588) replace: Gastrolobium crenulatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geleznowia verrucosa subsp. verrucosa replace: Geleznowia verrucosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Genoplesium cuspidatum replace: Genoplesium sp. Cuspidata (L.M.Copeland 3858) reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine pacifica replace: Glycine pacifica (Grace 946) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gompholobium gairdnerium replace: Gompholobium gairdnerianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species -- find: Gonocarpus benthamii subsp. benthamii - replace: Gonocarpus benthamii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus benthamii subsp. Stirling replace: Gonocarpus benthamii subsp. Stirling (C.J.Robinson 1080) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Gonocarpus benthamii subsp. benthamii + replace: Gonocarpus benthamii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Goodenia sp. East Pilbara (A.A. Mitchell PRP 727) O'Meara's Goodenia replace: Goodenia sp. East Pilbara (A.R.Mitchell PRP 727) WA Herbarium reason: match_18. Automatic alignment with infraspecific canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Grevillea 'RF05' + replace: Grevillea sp. [Grevillea 'RF05'] + reason: Manual match to genus for taxon that can't be match to species (Elizabeth + Wenk, 2022-11-23) + taxonomic_resolution: genus - find: Grevillea brachystylis subsp. Busselton replace: Grevillea brachystylis subsp. Busselton (G.J.Keighery s.n. 28/8/1985) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Grevillea juniperina 'H22' + replace: Grevillea juniperina + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species +- find: Grevillea robusta 'VIC 97-11' + replace: Grevillea robusta + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Grevillea rosmarinifolia 'RP 03' + replace: Grevillea rosmarinifolia + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Grevillea sp. Duranillin (E.F. Shedley 180) replace: Grevillea sp. [Grevillea sp. Duranillin (E.F. Shedley 180); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -742,16 +945,21 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Grevillea stenomera 'LowstenoGL' + replace: Grevillea stenomera + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Grevillea synapheae subsp. A Flora of Australia replace: Grevillea synapheae subsp. A Flora of Australia (S.D.Hopper 6333) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grevillea uncinulata subsp. Coomallo replace: Grevillea uncinulata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gynochthodes sp. iron range b.hyland 11587 replace: Gynochthodes sp. [Gynochthodes sp. iron range b.hyland 11587; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -767,6 +975,16 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Hakea laurina 'PVHL1' + replace: Hakea laurina + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Hakea salicifolia 'HAL01' + replace: Hakea salicifolia + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Hakea sp. Eastern coastal plain (G.J. Keighery 8014) replace: Hakea sp. [Hakea sp. Eastern coastal plain (G.J. Keighery 8014); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -776,32 +994,32 @@ taxonomic_updates: replace: Halgania cyanea var. Allambi Stn (B.W.Strong 676) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania cyanea var. Charleville replace: Halgania cyanea var. (Charleville R.W.Purdie+ 111) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas -- find: Halgania gustafsenii var. gustafsenii - replace: Halgania gustafsenii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Halgania gustafsenii var. Mid West replace: Halgania gustafsenii var. Mid West (G.Perry 370) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Halgania gustafsenii var. gustafsenii + replace: Halgania gustafsenii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Halgania solanacea var. Mt Doreen replace: Halgania solanacea var. Mt Doreen (G.M.Chippendale 4206) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Halgania solanacea var. solanacea replace: Halgania solanacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haworthia attenuata var. attenuata replace: Haworthia sp. [Haworthia attenuata var. attenuata; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI @@ -811,43 +1029,48 @@ taxonomic_updates: replace: Hemiandra glabra reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Three Springs (S.Patrick 4043A) replace: Hemigenia sp. Three Springs (S.Patrick 4043 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hoffmannseggia glauca replace: Hoffmannseggia glauca reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Houttuynia cordata replace: Houttuynia cordata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hybanthus floribundus subsp. Hill River replace: Hybanthus floribundus subsp. Hill River (E.M.Bennett 2252) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hymenophyllum (Mt. Burnett) replace: Hymenophyllum sp. [Hymenophyllum (Mt. Burnett); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Hymenosporum flavum 'VIC 97-12' + replace: Hymenosporum flavum + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Hypocalymma angustifolium subsp. Dandaragan Plateau (S.Patrick 702A) replace: Hypocalymma angustifolium subsp. Dandaragan Plateau (S.Patrick 702 A) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hypoxis hygrometrica var. hypoglaucum replace: Hypoxis hygrometrica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Indigofera gilesii subsp. gilesii replace: Indigofera sp. Gilesii (M.E.Trudgen 15869) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomoea fimbriosepala replace: Ipomoea sp. [Ipomoea fimbriosepala; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -858,44 +1081,54 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Isopogon anemonifolius 'Woorikee 2000' + replace: Isopogon anemonifolius + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. hypocrateriformis replace: Isotoma hypocrateriformis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma hypocrateriformis var. trichogramma replace: Isotoma hypocrateriformis var. trichogamma MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lasiopetalum cordifolium subsp. cordifolium replace: Lasiopetalum cordifolium reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum molle subsp. molle replace: Lasiopetalum molle reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum oldfieldii subsp. oldfieldii replace: Lasiopetalum oldfieldii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Badgingarra (E.A.Griffiths 5278) replace: Lasiopetalum sp. Badgingarra (E.A.Griffin 5278) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum sp. Watheroo (K.Shepherd & C.Wilkins KS220) replace: Lasiopetalum erectifolium reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lechenaultia 'Kings Park Hot Lips' + replace: Lechenaultia sp. [Lechenaultia 'Kings Park Hot Lips'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Leontodon saxatilis subsp. saxatilis replace: Leontodon saxatilis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sulcatus replace: Leucopogon sp. [Leucopogon striatus] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -904,26 +1137,71 @@ taxonomic_updates: - find: Lolium multiflorum x perenne replace: Lolium multiflorum x Lolium perenne reason: Manual alignment with canonical species name in APNI (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lolium perenne x rigidum replace: Lolium perenne subsp. rigidum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Lomandra confertifolia 'SIR 5' + replace: Lomandra confertifolia subsp. similis + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: subspecies +- find: Lomandra filiformis 'LMF500' + replace: Lomandra filiformis + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Lomandra fluviatilis 'ABU7' + replace: Lomandra fluviatilis + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-23) + taxonomic_resolution: species +- find: Lomandra hystrix 'WN002' + replace: Lomandra hystrix + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Lomandra longifolia 'LM400' + replace: Lomandra longifolia + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Lomandra montana 'LLM500' + replace: Lomandra montana + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Lomandra multiflora 'VER1' + replace: Lomandra multiflora + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Macadamia 'Hidden Valley A16' + replace: Macadamia sp. [Macadamia 'Hidden Valley A16'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Margyricarpus pinnatus replace: Margyricarpus pinnatus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meeboldina decipiens subsp. decipiens replace: Meeboldina decipiens MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca incana subsp. Gingilup replace: Melaleuca incana subsp. Gingilup (N.Gibson & M.Lyons 593) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Melia azedarach 'Telopea Valley Mini-Cedar' + replace: Melia azedarach + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Miconia nervosa replace: Miconia sp. [Miconia nervosa; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -932,49 +1210,64 @@ taxonomic_updates: - find: Microcybe pauciflora subsp. Grass Patch replace: Microcybe pauciflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microcybe sp. Windy Hill (G.F. Craig 6583) replace: Microcybe sp. [Microcybe sp. Windy Hill (G.F. Craig 6583); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Microlaena stipoides '703.6.12' + replace: Microlaena stipoides + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Micromyrtus racemosa var. north-west replace: Micromyrtus racemosa var. north-west (R.J.Cranfield 2891) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Micromyrtus triptycha subsp. triptycha replace: Micromyrtus triptycha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia sp. Bursarioides (T..Lally 760) replace: Mirbelia sp. Bursarioides (T.R.Lally 760) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mirbelia ternata replace: Mirbelia sp. Ternata (M.D.Crisp & L.G.Cook MDC 9267) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Monotoca oligarrhenoides subsp. Gibson replace: Monotoca oligarrhenoides subsp. Gibson (R.D.Royce 3573) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Murraya paniculata 'Style-it-XS' + replace: Murraya paniculata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Myosotis laxa subsp. caespitosa replace: Myosotis laxa subsp. cespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Nephrolepis obliterata 'Kimberley Queen Curly Top' + replace: Nephrolepis obliterata + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Olearia dampieri subsp. dampieri replace: Olearia dampieri MS reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia macrorhiza subsp. pottsii replace: Opuntia sp. [Opuntia macrorhiza subsp. pottsii; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -984,12 +1277,12 @@ taxonomic_updates: replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia polyacantha var. erinacea (Engelm. & J.M.Bigelow) B.D.Parfitt replace: Opuntia polyacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Opuntia sp. sensu I.Telford (1984) replace: Opuntia sp. [Opuntia sp. sensu I.Telford (1984); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1010,21 +1303,21 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus -- find: Patersonia drummondii subsp. drummondii - replace: Patersonia drummondii - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species - find: Patersonia drummondii subsp. Northern replace: Patersonia drummondii subsp. Northern (R.D.Royce UWA 777) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Patersonia drummondii subsp. drummondii + replace: Patersonia drummondii + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Pelargonium littorale subsp. littorale replace: Pelargonium littorale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persicaria chinensis replace: Persicaria sp. [Persicaria chinensis] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -1034,24 +1327,49 @@ taxonomic_updates: replace: Petrophile chrysantha subsp. Watheroo (K.M.Allan 57) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Petrophile squamata subsp. Ravensthorpe replace: Petrophile squamata subsp. Ravensthorpe (E.M.Bennett 2597) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Philotheca 'J. Semmens' + replace: Philotheca sp. [Philotheca 'J. Semmens'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus - find: Philotheca nodiflora subsp. lateriticola replace: Philotheca nodiflora subsp. latericola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Philotheca verrucosa 'J. Semmens' + replace: Philotheca verrucosa + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Pimelea ferruginea 'WhiteferruGL' + replace: Pimelea ferruginea + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pimelea physodes 'QualredGL' + replace: Pimelea physodes + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Plecostachys serpyllifolia replace: Plecostachys serpyllifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Poa poiformis 'PP500' + replace: Poa poiformis + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Polygonatum multiflorum replace: Polygonatum sp. [Polygonatum multiflorum; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1061,17 +1379,17 @@ taxonomic_updates: replace: Pomaderris viridis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pongamia pinnata var. minor replace: Pongamia pinnata var. minor reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prasophyllum sp. A sensu Harden (1993) replace: Prasophyllum sp. A reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prosopis mesquite replace: Prosopis sp. [Prosopis mesquite; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1086,7 +1404,17 @@ taxonomic_updates: replace: Ranunculus aquatilis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Rhagodia baccata 'RhagsilGL' + replace: Rhagodia baccata + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Rhagodia spinescens 'SAB01' + replace: Rhagodia spinescens + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Roepera sessilifolia replace: Roepera sp. [Roepera sessilifolia; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1096,7 +1424,7 @@ taxonomic_updates: replace: Rotheca myricoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rubus praecox replace: Rubus sp. [Rubus praecox; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1110,40 +1438,60 @@ taxonomic_updates: - find: Salix x sepulcralis var. chrysocoma replace: Salix x sepulcralis nothovar. chrysocoma reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Salix x sepulcralis var. sepulcralis replace: Salix x sepulcralis nothovar. sepulcralis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Salvia africana-lutea replace: Salvia africana lutea reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Salvinia adnata replace: Salvinia sp. [Salvinia adnata; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Scaevola aemula 'PP 031' + replace: Scaevola aemula + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Scaevola humilis 'PFS100' + replace: Scaevola humilis + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Scaevola nitida 'ScawGL' + replace: Scaevola nitida + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species +- find: Scaevola phlebopetala 'No.33' + replace: Scaevola phlebopetala + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Schoenus subflavus subsp. hispid culms replace: Schoenus subflavus subsp. hispid culms (K.R.Newbey 8278) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. long leaves replace: Schoenus subflavus subsp. long leaves (K.L.Wilson 2865) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus subflavus subsp. subflavus replace: Schoenus subflavus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha var. deminuta replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437) replace: Sclerolaena sp. [Sclerolaena sp. Koolanooka Hills (R. Meissner & Y. Caruso 437); Wenk_2022] @@ -1158,16 +1506,16 @@ taxonomic_updates: - find: Sclerolaena x georgei replace: Sclerolaena georgei reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Searsia lancea replace: Searsia lancea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sebaea zeyheri subsp. cleistantha replace: Sebaea zeyheri reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Selenicereus undatus replace: Selenicereus sp. [Selenicereus undatus; Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1177,30 +1525,30 @@ taxonomic_updates: replace: Senecio linearifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. B sensu Harden (1990) replace: Sida sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. C sensu Harden (1990) replace: Sida sp. C reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sida sp. Pilbara (S. van Leeuwen 4377) replace: Sida sp. [Sida sp. Pilbara (S. van Leeuwen 4377); WAH_2022_2] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus -- find: Sida sp. sand dunes (A.A.Mitchell PRP1208) - replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species - find: Sida sp. Walhallow Station (C.Edgood 28/Oct/94) replace: Sida A90358 Walhallow Station reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sida sp. sand dunes (A.A.Mitchell PRP1208) + replace: Sida sp. sand dunes (A.A.Mitchell PRP1208) + reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) + taxonomic_resolution: species - find: Smilax sp. aff. s. elliptica replace: Smilax sp. [Smilax sp. aff. s. elliptica; Wenk_2022] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1210,20 +1558,20 @@ taxonomic_updates: replace: Solanum viride reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spigelia anthelmia replace: Spigelia anthelmia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia muricata subsp. annual replace: Stackhousia muricata subsp. Annual (W.R.Barker 2172) reason: Manual alignment with canonical subspecies name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Steinchisma laxa replace: Steinchisma laxum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphea sp. Darkin (F. Hort et al. 586) replace: Synaphea sp. [Synaphea sp. Darkin (F. Hort et al. 586); Wenk_2022] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1270,46 +1618,56 @@ taxonomic_updates: replace: Tecticornia sp. Connewarre (A.C.Beauglehole 70251) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Telopea 'T90-1-0-1' + replace: Telopea sp. [Telopea 'T90-1-0-1'; Wenk_2022] + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-23) + taxonomic_resolution: genus +- find: Telopea speciosissima 'Light Shade of Pale' + replace: Telopea speciosissima + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Tephrosia rosea var. Fortescue creeks replace: Tephrosia rosea var. Fortescue creeks (M.I.H.Brooker 2186) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Tephrosia rosea var. Port Hedland replace: Tephrosia rosea var. Port Hedland (A.S.George 1114) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Teucrium fililobum subsp. fililobum replace: Teucrium fililobum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium fililobum subsp. glandular replace: Teucrium fililobum subsp. glandular (W.Rogerson 233) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Teucrium sp. D sensu Conn (1992) replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra x mackibbinii replace: Thelymitra mackibbinii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia purpurea x solanacea replace: Thomasia purpurea x Thomasia solanacea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thryptomene ninghanensis replace: Thryptomene ninghanensis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211) replace: Tricoryne sp. [Tricoryne sp. Great Victoria Desert western dunes (C. Slee 645-211); Wenk_2022] @@ -1330,425 +1688,71 @@ taxonomic_updates: replace: Verbena hispida reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia plumosa var. ananeotes x vassensis replace: Verticordia plumosa [Verticordia plumosa var. ananeotes x vassensis; Wenk_2022] reason: Manual match to species, ignoring infraspecific information (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verticordia staminosa subsp. cylindracea var. cylindracea replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Verticordia staminosa subsp. cylindracea var. erecta replace: Verticordia staminosa subsp. cylindracea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies -- find: X Triticosecale - replace: x Triticosecale - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Yucca gloriosa var. recurvifolia - replace: Yucca gloriosa - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Acacia acinacea 'AC01' - replace: Acacia acinacea - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Acacia cognata 'BW 06' - replace: Acacia cognata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Acacia fimbriata 'AF001' - replace: Acacia fimbriata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Acacia 'H.L.White' - replace: Acacia sp. [Acacia 'H.L.White'; Wenk_2022] - reason: manual alignment to genus (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: genus -- find: Acacia leprosa 'RBGM 801' - replace: Acacia leprosa - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Acacia pravissima 'NE 02' - replace: Acacia pravissima - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Acacia spathulifolia 'FlatspathGL' - replace: Acacia spathulifolia - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Adenanthos sericeus 'AdenpurpGL' - replace: Adenanthos sericeus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Astrebla lappacea '104C' - replace: Astrebla lappacea - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Astrebla pectinata '64A' - replace: Astrebla pectinata - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Banksia integrifolia 'BIT 11' - replace: Banksia integrifolia - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Banksia marginata 'Mt. William Dwarf' - replace: Banksia marginata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Banksia spinulosa 'BC 01' - replace: Banksia spinulosa - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Boronia crenulata 'Shark Bay' - replace: Boronia crenulata subsp. Shark Bay (G.Cockerton 5187) - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Subspecies -- find: Casuarina glauca 'CAS01' - replace: Casuarina glauca - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Citrus 'Red Centre LIme' - replace: Citrus sp. [Citrus 'Red Centre LIme'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Cordyline fruticosa 'BRA01' - replace: Cordyline fruticosa - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Cordyline 'Uto01' - replace: Cordyline sp. [Cordyline 'Uto01'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Correa alba 'CR001' - replace: Correa alba - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Correa 'C100' - replace: Correa sp. [Correa 'C100'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Correa pulchella 'Wreck of the Ethyl' - replace: Correa pulchella - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Correa reflexa 'Anglesea' - replace: Correa reflexa - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Correa reflexa 'Portland Frost and Lime' - replace: Correa reflexa - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Crowea saligna 'PPCS1' - replace: Crowea saligna - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Dianella caerulea 'DBB03' - replace: Dianella caerulea - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Dianella congesta 'DCT500' - replace: Dianella congesta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Dianella longifolia 'AU22' - replace: Dianella longifolia - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Dianella 'Proquest D5' - replace: Dianella sp. [Dianella 'Proquest D5'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Dianella prunina 'DP303' - replace: Dianella prunina - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Dianella revoluta 'DR5000' - replace: Dianella revoluta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Dianella tasmanica 'TR20' - replace: Dianella tasmanica - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Eriostemon 'J. Semmens' - replace: Eriostemon sp. [Eriostemon 'J. Semmens'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Eucalyptus cladocalyx 'EUC78' - replace: Eucalyptus cladocalyx [Eucalyptus cladocalyx 'EUC78'] - reason: manual match to canonical name in APC (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: Species -- find: Eucalyptus 'EpEm1001' - replace: Eucalyptus sp. [Eucalyptus 'EpEm1001'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Eucalyptus melliodora 'Rosea' - replace: Eucalyptus melliodora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Eucalyptus robusta 'The Green and Gold' - replace: Eucalyptus robusta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Ficus obliqua 'FFV1' - replace: Ficus obliqua - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Grevillea juniperina 'H22' - replace: Grevillea juniperina - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Grevillea 'RF05' - replace: Grevillea sp. [Grevillea 'RF05'] - reason: Manual match to genus for taxon that can't be match to species (Elizabeth - Wenk, 2022-11-23) - taxonomic_resolution: Genus -- find: Grevillea robusta 'VIC 97-11' - replace: Grevillea robusta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Grevillea rosmarinifolia 'RP 03' - replace: Grevillea rosmarinifolia - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Grevillea stenomera 'LowstenoGL' - replace: Grevillea stenomera - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Hakea laurina 'PVHL1' - replace: Hakea laurina - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Hakea salicifolia 'HAL01' - replace: Hakea salicifolia - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Hymenosporum flavum 'VIC 97-12' - replace: Hymenosporum flavum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Isopogon anemonifolius 'Woorikee 2000' - replace: Isopogon anemonifolius - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Lechenaultia 'Kings Park Hot Lips' - replace: Lechenaultia sp. [Lechenaultia 'Kings Park Hot Lips'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Lomandra confertifolia 'SIR 5' - replace: Lomandra confertifolia subsp. similis - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Subspecies -- find: Lomandra filiformis 'LMF500' - replace: Lomandra filiformis - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Lomandra fluviatilis 'ABU7' - replace: Lomandra fluviatilis - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-23) - taxonomic_resolution: Species -- find: Lomandra hystrix 'WN002' - replace: Lomandra hystrix - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Lomandra longifolia 'LM400' - replace: Lomandra longifolia - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Lomandra montana 'LLM500' - replace: Lomandra montana - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Lomandra multiflora 'VER1' - replace: Lomandra multiflora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Macadamia 'Hidden Valley A16' - replace: Macadamia sp. [Macadamia 'Hidden Valley A16'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Melia azedarach 'Telopea Valley Mini-Cedar' - replace: Melia azedarach - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Microlaena stipoides '703.6.12' - replace: Microlaena stipoides - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Murraya paniculata 'Style-it-XS' - replace: Murraya paniculata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Nephrolepis obliterata 'Kimberley Queen Curly Top' - replace: Nephrolepis obliterata - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Philotheca 'J. Semmens' - replace: Philotheca sp. [Philotheca 'J. Semmens'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus -- find: Philotheca verrucosa 'J. Semmens' - replace: Philotheca verrucosa - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Pimelea ferruginea 'WhiteferruGL' - replace: Pimelea ferruginea - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Pimelea physodes 'QualredGL' - replace: Pimelea physodes - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Poa poiformis 'PP500' - replace: Poa poiformis - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Rhagodia baccata 'RhagsilGL' - replace: Rhagodia baccata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Rhagodia spinescens 'SAB01' - replace: Rhagodia spinescens - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Scaevola aemula 'PP 031' - replace: Scaevola aemula - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Scaevola humilis 'PFS100' - replace: Scaevola humilis - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Scaevola nitida 'ScawGL' - replace: Scaevola nitida - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Scaevola phlebopetala 'No.33' - replace: Scaevola phlebopetala - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Telopea speciosissima 'Light Shade of Pale' - replace: Telopea speciosissima - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Telopea 'T90-1-0-1' - replace: Telopea sp. [Telopea 'T90-1-0-1'; Wenk_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-23) - taxonomic_resolution: genus + taxonomic_resolution: subspecies - find: X Cyanthera glossodioides replace: x Cyanthera glossodioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Cynochloris macivorii replace: x Cynochloris macivorii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Cynochloris reynoldensis replace: x Cynochloris reynoldensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species - find: X Phelodia tutelata replace: x Phelodia tutelata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: X Triticosecale + replace: x Triticosecale + reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth + Wenk, 2022-11-22) + taxonomic_resolution: genus +- find: Yucca gloriosa var. recurvifolia + replace: Yucca gloriosa + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Zoysia macrantha 'MAC03' replace: Zoysia macrantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zoysia matrella 'A-1' replace: Zoysia matrella reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-23) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name - find: Cyrtomium falcatum 'Rochfordii', Dicentra formosa subsp. formosa 'Alba', Dodonaea viscosa 'Purpurea', Echinochloa polystachya 'Amity', Salix matsudana 'Tortuosa', Megathyrsus maximus var. maximus 'Hamil', Hymenachne amplexicaulis 'Olive', Grevillea 'Poorinda Constance', Platanus x hispanica 'Acerifolia' + find: "Cyrtomium falcatum 'Rochfordii', Dicentra formosa subsp. formosa 'Alba', + Dodonaea viscosa 'Purpurea', Echinochloa polystachya 'Amity', Salix matsudana + 'Tortuosa', Megathyrsus maximus var. maximus 'Hamil', Hymenachne amplexicaulis + 'Olive', Grevillea 'Poorinda Constance', \tPlatanus x hispanica 'Acerifolia'" reason: excluding cultivars - variable: taxon_name - find: Salix x sepulcralis nothovar. chrysocoma, Salix x sepulcralis nothovar. sepulcralis, Salix x fragilis nothovar. furcata, Salix x fragilis nothovar. fragilis + find: Salix x sepulcralis nothovar. chrysocoma, Salix x sepulcralis nothovar. sepulcralis, + Salix x fragilis nothovar. furcata, Salix x fragilis nothovar. fragilis reason: excluding nothovarietas questions: .na diff --git a/data/Wenk_2023/metadata.yml b/data/Wenk_2023/metadata.yml index 181ab30c6..c712e3b9e 100644 --- a/data/Wenk_2023/metadata.yml +++ b/data/Wenk_2023/metadata.yml @@ -4,7 +4,8 @@ source: bibtype: Unpublished year: 2023 author: Elizabeth Wenk - title: 'Unpublished data: Australian plant life history dataset, University of New South Wales, Sydney' + title: 'Unpublished data: Australian plant life history dataset, University of + New South Wales, Sydney' contributors: data_collectors: - last_name: Wenk @@ -23,11 +24,28 @@ dataset: custom_R_code: .na collection_date: unknown/2022 taxon_name: taxon_name - description: A curated collection of life history values that includes nearly - all species in the Australian Plant Census (APC). + description: A curated collection of life history values that includes nearly all + species in the Australian Plant Census (APC). basis_of_record: literature, field life_stage: adult - sampling_strategy: This dataset is compiled from a combination of data extracted from state and national online floras, supplemented by the taxonomic literature. Information in the state and national floras was scraped using natural language processing and is individually stored in AusTraits under the dataset_ids ABRS_2022 (Flora of Australia), NHNSW_2022, NTH_2022, RBGV_2022, SAH_2022, WAH_2022_1, and WAH_2022_2. If all floras offered the same trait value for all taxa and that value was either 'annual' or 'perennial', this was automatically accepted. For all entries where different state floras provided different life history values or values that indicated a 'mixed score' (e.g. 'annual biennial'), the descriptions in the floras were individually read and a concensus score was assigned. For entries without a value in any of the floras, additional sources were refereced including the print Flora of Australia books, the taxonomic literature, floras from others countries (especially for naturalised species), and other reliable websites. The source for each score is documented in the columns 'source' and 'citation'. In addition, the column 'scoring' indicates if a score was based on the species, genus, or family descriptions; for some taxa the entire genus or family has the same life history score and then this value was used for all species lacking an individual score. + sampling_strategy: This dataset is compiled from a combination of data extracted + from state and national online floras, supplemented by the taxonomic literature. + Information in the state and national floras was scraped using natural language + processing and is individually stored in AusTraits under the dataset_ids ABRS_2022 + (Flora of Australia), NHNSW_2022, NTH_2022, RBGV_2022, SAH_2022, WAH_2022_1, and + WAH_2022_2. If all floras offered the same trait value for all taxa and that value + was either 'annual' or 'perennial', this was automatically accepted. For all entries + where different state floras provided different life history values or values + that indicated a 'mixed score' (e.g. 'annual biennial'), the descriptions in the + floras were individually read and a concensus score was assigned. For entries + without a value in any of the floras, additional sources were refereced including + the print Flora of Australia books, the taxonomic literature, floras from others + countries (especially for naturalised species), and other reliable websites. The + source for each score is documented in the columns 'source' and 'citation'. In + addition, the column 'scoring' indicates if a score was based on the species, + genus, or family descriptions; for some taxa the entire genus or family has the + same life history score and then this value was used for all species lacking an + individual score. original_file: none notes: none locations: .na @@ -40,7 +58,23 @@ traits: value_type: mode basis_of_value: expert_score replicates: .na - methods: This dataset is compiled from a combination of data extracted from state and national online floras, supplemented by the taxonomic literature. Information in the state and national floras was scraped using natural language processing and is individually stored in AusTraits under the dataset_ids ABRS_2022 (Flora of Australia), NHNSW_2022, NTH_2022, RBGV_2022, SAH_2022, WAH_2022_1, and WAH_2022_2. If all floras offered the same trait value for all taxa and that value was either 'annual' or 'perennial', this was automatically accepted. For all entries where different state floras provided different life history values or values that indicated a 'mixed score' (e.g. 'annual biennial'), the descriptions in the floras were individually read and a concensus score was assigned. For entries without a value in any of the floras, additional sources were refereced including the print Flora of Australia books, the taxonomic literature, floras from others countries (especially for naturalised species), and other reliable websites. The source for each score is documented in the columns 'source' and 'citation'. In addition, the column 'scoring' indicates if a score was based on the species, genus, or family descriptions; for some taxa the entire genus or family has the same life history score and then this value was used for all species lacking an individual score. + methods: This dataset is compiled from a combination of data extracted from state + and national online floras, supplemented by the taxonomic literature. Information + in the state and national floras was scraped using natural language processing + and is individually stored in AusTraits under the dataset_ids ABRS_2022 (Flora + of Australia), NHNSW_2022, NTH_2022, RBGV_2022, SAH_2022, WAH_2022_1, and WAH_2022_2. + If all floras offered the same trait value for all taxa and that value was either + 'annual' or 'perennial', this was automatically accepted. For all entries where + different state floras provided different life history values or values that indicated + a 'mixed score' (e.g. 'annual biennial'), the descriptions in the floras were + individually read and a concensus score was assigned. For entries without a value + in any of the floras, additional sources were refereced including the print Flora + of Australia books, the taxonomic literature, floras from others countries (especially + for naturalised species), and other reliable websites. The source for each score + is documented in the columns 'source' and 'citation'. In addition, the column + 'scoring' indicates if a score was based on the species, genus, or family descriptions; + for some taxa the entire genus or family has the same life history score and then + this value was used for all species lacking an individual score. substitutions: .na taxonomic_updates: .na exclude_observations: .na diff --git a/data/Wenk_2023_2/metadata.yml b/data/Wenk_2023_2/metadata.yml index d9d6e231f..89673ec6c 100644 --- a/data/Wenk_2023_2/metadata.yml +++ b/data/Wenk_2023_2/metadata.yml @@ -121,13 +121,13 @@ traits: and national floras and scored manually. substitutions: .na taxonomic_updates: -- find: Diplodium longicurvum - replace: Pterostylis longicurva - reason: Manual alignment to synonym (E. Wenk, 2023-04-03) - taxonomic_resolution: Species - find: Canthium lineare replace: Psydrax suaveolens reason: Manual alignment to synonym (E. Wenk, 2023-04-03) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Diplodium longicurvum + replace: Pterostylis longicurva + reason: Manual alignment to synonym (E. Wenk, 2023-04-03) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Westman_1977/metadata.yml b/data/Westman_1977/metadata.yml index b80b2f600..998449648 100644 --- a/data/Westman_1977/metadata.yml +++ b/data/Westman_1977/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Anna Richards dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' root_data <- data %>% filter(tissue %in% c("root crown", "tap root", "lateral root")) %>% @@ -678,12 +678,12 @@ taxonomic_updates: - find: Caustis blakeii replace: Caustis blakei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus umbra ssp. umbra replace: Eucalyptus umbra subsp. umbra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: additional_traits: flower nutrient concentrations; additional micronutrient concentrations diff --git a/data/Westoby_2003/metadata.yml b/data/Westoby_2003/metadata.yml index e93372215..4e29dfcf6 100644 --- a/data/Westoby_2003/metadata.yml +++ b/data/Westoby_2003/metadata.yml @@ -190,11 +190,11 @@ taxonomic_updates: replace: Dodonaea viscosa var. spathulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia oswaldii replace: Olearia sp. [Olearia oswaldii; Westoby_2003] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -203,6 +203,6 @@ taxonomic_updates: - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Westoby_2004/metadata.yml b/data/Westoby_2004/metadata.yml index 3fbdfaa07..638475a19 100644 --- a/data/Westoby_2004/metadata.yml +++ b/data/Westoby_2004/metadata.yml @@ -17,7 +17,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(`leaf type`= ifelse(str_detect(name_original,"Synoum"),"simple compound",`leaf type`)) %>% group_by(name_original) %>% @@ -187,76 +187,76 @@ taxonomic_updates: replace: Alangium villosum subsp. polyosmoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Anopterus macleayanus replace: Anopterus macleayanus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capparis arborea replace: Capparis arborea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citriobatus pauciflorus replace: Citriobatus pauciflorus reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Claoxylon australe replace: Claoxylon australe reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cleistanthus cunninghamii replace: Cleistanthus cunninghamii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya rigida replace: Cryptocarya rigida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eupomatia laurina replace: Eupomatia laurina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus coronata replace: Ficus coronata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus fraseri replace: Ficus fraseri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neolitsea australiensis replace: Neolitsea australiensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neolitsea dealbata replace: Neolitsea dealbata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum undulatum replace: Pittosporum undulatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcomelicope simplicifolia replace: Sarcomelicope simplicifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synoum glandulosum replace: Synoum glandulosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Westoby_2014/metadata.yml b/data/Westoby_2014/metadata.yml index a92b80f3b..23340a78e 100644 --- a/data/Westoby_2014/metadata.yml +++ b/data/Westoby_2014/metadata.yml @@ -120,7 +120,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(across(c(`gl Mo (mg/kg)`,`gl Na (mg/g)`), ~na_if(.x, 0))) ' @@ -1421,15 +1421,15 @@ taxonomic_updates: replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa spathulata replace: Dodonaea viscosa var. spathulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Ozothamnus ferugineum replace: Ozothamnus ferrugineus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wheeler_2002/metadata.yml b/data/Wheeler_2002/metadata.yml index 1ca8ed219..957dbaad5 100644 --- a/data/Wheeler_2002/metadata.yml +++ b/data/Wheeler_2002/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_lobation = ifelse(`leaf type` == "lobed" | `leaf shape` == "lobed", @@ -192,412 +192,412 @@ taxonomic_updates: replace: Actinotus "walpole" (Wheeler 3786) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agonis sp. Coarse agonis replace: Agonis sp. Coarse Agonis (J.R.Wheeler 2939) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agonis sp. Lake Jasper replace: Agonis sp. Lake Jasper (B.M.Hammersley 567) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera nodiflora replace: Alternanthera nodiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia ferricola ms replace: Andersonia ferricola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia geniculata ms replace: Andersonia geniculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia hammersleyana ms replace: Andersonia hammersleyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia redolens ms replace: Andersonia redolens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Andersonia sp. Frankland replace: Andersonia sp. Frankland (W.Jackson BJ8) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthos priessii replace: Anigozanthos preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anthotium sp. Peaceful Bay replace: Anthotium sp. Peaceful Bay (J.R.Wheeler 3772 & S.J.Patrick) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aotus sp. Scott River replace: Aotus sp. Scott River (K.F.Kenneally 2371) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Apium annum replace: Apium annuum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aponogeton hexapetalus replace: Aponogeton hexatepalus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Big bracteoles replace: Astartea sp. big bracteoles (A.R.Annels 995) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Brixton Rd replace: Astartea sp. Brixton Rd (G.J.Keighery 5389) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Gingalup replace: Astartea sp. Gingalup (N.Gibson & M.Lyons 119) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Juniperina replace: Astartea sp. juniperina (G.J.Keigery 9558) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Long stalks replace: Astartea sp. long stalks (D.Foreman 1490) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Rivers replace: Astartea sp. rivers (K.R.Newbey 1740) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Scott River replace: Astartea sp. Scott River (D.Backshall 88233) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astartea sp. Wingtips replace: Astartea sp. wing tips (M.E.Trudgen 12044) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astroloma sp. Nannup replace: Astroloma sp. Nannup (R.D.Royce 3978) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea priessii replace: Baumea preissii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blennospora sp. Ruabon replace: Blennospora sp. Ruabon (B.J.Keighery & N.Gibson 20) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia fastigata replace: Boronia fastigiata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyloma preissii replace: Brachyloma preissii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia abbreviata ms replace: Caladenia abbreviata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia applanata ms replace: Caladenia applanata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia arrecta ms replace: Caladenia arrecta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia attingens ms replace: Caladenia attingens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia brownii ms replace: Caladenia brownii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia chapmanii ms replace: Caladenia chapmanii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia citrina ms replace: Caladenia citrina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia evanescens ms replace: Caladenia evanescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia excelsa ms replace: Caladenia excelsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia gardneri ms replace: Caladenia gardneri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia georgei ms replace: Caladenia georgei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia harringtoniae ms replace: Caladenia harringtoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia heberleana ms replace: Caladenia heberleana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia interjacens ms replace: Caladenia interjacens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia lorea ms replace: Caladenia lorea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia nivalis ms replace: Caladenia nivalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia paludosa ms replace: Caladenia paludosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia pendens ms replace: Caladenia pendens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia pholcoidea ms replace: Caladenia pholcoidea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia serotina ms replace: Caladenia serotina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia speciosa ms replace: Caladenia speciosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia splendens ms replace: Caladenia splendens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia thinicola ms replace: Caladenia thinicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia viridescens ms replace: Caladenia viridescens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calandrinia repens replace: Calandrinia sp. [Calandrinia repens; Wheeler_2002] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Callistachys lanceolatum replace: Callistachys lanceolata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calochilus sp. Southwest swamps replace: Calochilus sp. "South-west Swamps" reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Mount Lindesay replace: Calothamnus sp. Mt Lindesay (B.G.Hammersley 439) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus sp. Scott River replace: Calothamnus sp. Scott River (R.D.Royce 84) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caustis sp. Boyanup replace: Caustis sp. "Boyanup" reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cheiranthera planifolia ms replace: Cheiranthera planifolia reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopdium pumilio replace: Chenopodium pumilio reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chordifex ismorphus replace: Chordifex isomorphus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chordifex jacksonii ms replace: Chordifex jacksonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cronnia kingiana replace: Croninia kingiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Williamson replace: Darwinia sp. Williamson (G.J.Keighery 12717) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Deyeuxia inequalis replace: Deyeuxia inaequalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichelachne crinita replace: Dichelachne crinita reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichelachne micrantha replace: Dichelachne micrantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. A Perth Flora replace: Dillwynia sp. A Perth Flora [Coveny 8036] reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sp. A Perth Flora [Coveny 8036] replace: Dillwynia sp. A Perth Flora [Coveny 8036] reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diuris herberlei replace: Diuris heberlei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drakaea gracilis ms replace: Drakaea gracilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drakaea micrantha ms replace: Drakaea micrantha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera glandulifera replace: Drosera glanduligera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera stellifora replace: Drosera stelliflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium billardierianum replace: Epilobium billardierianum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium hirtigerum replace: Epilobium hirtigerum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus helonomos ms replace: Eriochilus helonomos reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus pulchellus ms replace: Eriochilus pulchellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus tenuissima replace: Eriochilus tenuis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriochilus valens ms replace: Eriochilus valens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euphrasia alata replace: Euphrasia sp. [Euphrasia alata; Wheeler_2002] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Franklandia triasristata replace: Franklandia triaristata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium confertum replace: Gastrolobium congestum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium glabratum ms replace: Gastrolobium glabratum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium knightianum replace: Gompholobium knightianum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium marginatum replace: Gastrolobium emarginatum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium ovatum replace: Gastrolobium obovatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium polymorphum replace: Gompholobium polymorphum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium scabrum replace: Gompholobium scabrum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrolobium venustum replace: Gompholobium venustum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea bronwenae replace: Grevillea bronweniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea sp. Scott River replace: Grevillea sp. (Scott River, Keighery 4070) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hemigenia sp. Albany replace: Hemigenia sp. Albany (G.J.Keighery 8712) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Hairy sepals replace: Hibbertia sp. hairy sepals (J.R.Wheeler 2464) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. Rigid bracts replace: Hibbertia sp. rigid bracts (J.R.Wheeler 3220) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hyalosperma laxus replace: Hyalosperma sp. [Hyalosperma laxus; Wheeler_2002] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -606,137 +606,137 @@ taxonomic_updates: - find: Hydrocotyle puberla replace: Hydrocotyle puberula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocalymma sp. Scott River replace: Hypocalymma sp. Scott River (A.S.George 11773) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypolaena caespitosa ms replace: Hypolaena caespitosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypolaena viridis ms replace: Hypolaena viridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus bufonis replace: Juncus bufonius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus meianthus ms replace: Juncus meianthus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lambertia orbiflora replace: Lambertia orbifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptorynchos scaber replace: Leptorhynchos scaber reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Darradup replace: Leucopogon sp. Darradup (R.D.Royce 2998) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Denmark replace: Leucopogon sp. Denmark (J.M.Powell 1167) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Whicher range replace: Leucopogon sp. Whicher Range (G.J.Keighery 11763) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. Windy Harbour replace: Leucopogon sp. Windy Harbour (A.Strid 21460) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon tenuicaulis ms replace: Leucopogon tenuicaulis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Levenhookia priessii replace: Levenhookia preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Marianthus sp. Walpole replace: Marianthus sp. Walpole (A.R.Annels 277) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Meeboldina sp. White replace: Meeboldina sp. white (C.A.Gardner s.n.) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca systena ms replace: Melaleuca systena reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nemcia cordata ms replace: Nemcia congesta MS reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia axillaris replace: Olearia axillaris reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia cassiniae replace: Olearia cassiniae reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia ciliata replace: Olearia ciliata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia dampieri replace: Olearia dampieri MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia elaeophila replace: Olearia elaeophila reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia paucidentata replace: Olearia paucidentata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia rudis replace: Olearia rudis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia strigosa replace: Olearia strigosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paracaleana lineraifolia ms replace: Paracaleana linearifolia reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Paracaleana nigrita replace: Paracaleana nigrita reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parietaria debilissimus replace: Parietaria debilis reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Parietaria floribundus replace: Parietaria sp. [Parietaria floribundus; Wheeler_2002] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -751,186 +751,186 @@ taxonomic_updates: replace: Patersonia sp. Swamp Form (N.Gibson & M.Lyons 544) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium australe replace: Pelargonium australe reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium littorale replace: Pelargonium littorale reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia diversifolia replace: Petrophile diversifolia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia latericola ms replace: Petrophile latericola reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia serruriae replace: Petrophile serruriae reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Persoonia squamata replace: Petrophile squamata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea priessii replace: Pimelea preissii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polypogum tenellus replace: Polypogon tenellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum calcicola ms replace: Prasophyllum calcicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis brevisepala ms replace: Pterostylis brevisepala reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. Slender smail orchid replace: Pterostylis sp. Slender Snail Orchid (G.J.Keighery 14516) reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus sericostachys replace: Ptilotus sericostachyus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus curviflorus replace: Schoenus curvifolius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus multiglumus replace: Schoenus multiglumis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schoenus sp. Jindong replace: Schoenus sp. Jindong (R.D.Royce 2485) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphenotoma sp. Stirling range replace: Sphenotoma sp. Stirling Range (P.G.Wilson 4235) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium ledifolium replace: Spyridium latifolium reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spyridium venustum replace: Trymalium venustum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium lateriticola ms replace: Stylidium lateriticola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium plantaginuem replace: Stylidium plantagineum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium roseo-alatum replace: Stylidium roseoalatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium sp. Mt Barker replace: Stylidium sp. Mt Barker (E.J.Croxford 1906) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetragonia implexicoma replace: Tetragonia implexicoma reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetratheca parviflora replace: Tetratheca parvifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. "Plain Sun Orchid" [A.R.Annels 512] replace: Thelymitra sp. "Plain Sun Orchid" [A.R.Annels 512] reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Plain sun orchid replace: Thelymitra sp. "Plain Sun Orchid" [A.R.Annels 512] reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra sp. Slender sun orchid replace: Thelymitra sp. Slender Sun Orchid (A.R.Annels 2884) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia heterophylla ms replace: Thomasia heterophylla reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thomasia sp. Big Brook replace: Thomasia sp. Big Brook (M.Koch 2373) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tripterococcus paniculatus ms replace: Tripterococcus paniculatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia australis replace: Utricularia australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia benthamii replace: Utricularia benthamii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia inaequalis replace: Utricularia inaequalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia menziesii replace: Utricularia menziesii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia multifida replace: Utricularia multifida reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia paulineae replace: Utricularia paulineae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia simplex replace: Utricularia simplex reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia tenella replace: Utricularia tenella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia violacea replace: Utricularia violacea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Urticularia volubilis replace: Utricularia volubilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthosia atkinsonia replace: Xanthosia atkinsoniana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xyris atrovirida replace: Xyris atroviridis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/White_2020/metadata.yml b/data/White_2020/metadata.yml index 9a93091c6..396d58b00 100644 --- a/data/White_2020/metadata.yml +++ b/data/White_2020/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% subset(NonIndigenous != 1) %>% mutate(flowering_season = paste0(Flower_Jan,Flower_Feb,Flower_Mar,Flower_Apr,Flower_May,Flower_Jun, @@ -626,2813 +626,21 @@ taxonomic_updates: - find: Abrotanella spp. replace: Abrotanella sp. [White_2020] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Abutilon spp. - replace: Abutilon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acaena spp. - replace: Acaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acianthus spp. - replace: Acianthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aciphylla spp. - replace: Aciphylla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acronychia spp. - replace: Acronychia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acrothamnus spp. - replace: Acrothamnus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Acrotriche spp. - replace: Acrotriche sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Actinobole spp. - replace: Actinobole sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Actinotus spp. - replace: Actinotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Actites spp. - replace: Actites sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Adenanthos spp. - replace: Adenanthos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Adiantum spp. - replace: Adiantum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Adriana spp. - replace: Adriana sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aegiceras spp. - replace: Aegiceras sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aizoaceae spp. - replace: Aizoaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Ajuga spp. - replace: Ajuga sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Alchemilla spp. - replace: Alchemilla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Alectryon spp. - replace: Alectryon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Alisma spp. - replace: Alisma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Allittia spp. - replace: Allittia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Allocasuarina spp. - replace: Allocasuarina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Almaleea spp. - replace: Almaleea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Alternanthera spp. - replace: Alternanthera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Alyxia spp. - replace: Alyxia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ammannia spp. - replace: Ammannia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ammobium spp. - replace: Ammobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Amperea spp. - replace: Amperea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Amphibolis spp. - replace: Amphibolis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Amphibromus spp. - replace: Amphibromus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Amphipogon spp. - replace: Amphipogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Amyema spp. - replace: Amyema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Anacampseros spp. - replace: Anacampseros sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Angianthus spp. - replace: Angianthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Angophora spp. - replace: Angophora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Anisopogon spp. - replace: Anisopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Anogramma spp. - replace: Anogramma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Anthocercis spp. - replace: Anthocercis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Anthosachne spp. - replace: Anthosachne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aotus spp. - replace: Aotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Apalochlamys spp. - replace: Apalochlamys sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aphanes spp. - replace: Aphanes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aphanopetalum spp. - replace: Aphanopetalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aphelia spp. - replace: Aphelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Apium spp. - replace: Apium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Apodasmia spp. - replace: Apodasmia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Arabidella spp. - replace: Arabidella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Argentipallium spp. - replace: Argentipallium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Argyrotegium spp. - replace: Argyrotegium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Aristida spp. - replace: Aristida sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Arrhenechthites spp. - replace: Arrhenechthites sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Arthrochilus spp. - replace: Arthrochilus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Arthropteris spp. - replace: Arthropteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Asperula spp. - replace: Asperula sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Asplenium spp. - replace: Asplenium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Astelia spp. - replace: Astelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Asteridea spp. - replace: Asteridea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Asterolasia spp. - replace: Asterolasia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Astrebla spp. - replace: Astrebla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Astroloma spp. - replace: Astroloma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Astrotricha spp. - replace: Astrotricha sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Atherosperma spp. - replace: Atherosperma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Atriplex spp. - replace: Atriplex sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Australina spp. - replace: Australina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Australopyrum spp. - replace: Australopyrum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Austrobryonia spp. - replace: Austrobryonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Austromyrtus spp. - replace: Austromyrtus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Austrostipa spp. - replace: Austrostipa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Avicennia spp. - replace: Avicennia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Azolla spp. - replace: Azolla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Babingtonia spp. - replace: Babingtonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Backhousia spp. - replace: Backhousia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Baeckea spp. - replace: Baeckea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ballantinia spp. - replace: Ballantinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Baloskion spp. - replace: Baloskion sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Banksia spp. - replace: Banksia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bauera spp. - replace: Bauera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Baumea spp. - replace: Machaerina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Beaufortia spp. - replace: Beaufortia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bedfordia spp. - replace: Bedfordia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bergia spp. - replace: Bergia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bertya spp. - replace: Bertya sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Berula spp. - replace: Berula sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Beyeria spp. - replace: Beyeria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Billardiera spp. - replace: Billardiera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Blechnum spp. - replace: Blechnum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Blennospora spp. - replace: Blennospora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Boerhavia spp. - replace: Boerhavia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bolboschoenus spp. - replace: Bolboschoenus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Boraginaceae spp. - replace: Boraginaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Boronia spp. - replace: Boronia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Borya spp. - replace: Borya sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bossiaea spp. - replace: Bossiaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bothriochloa spp. - replace: Bothriochloa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Botrychium spp. - replace: Botrychium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brachychiton spp. - replace: Brachychiton sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brachyloma spp. - replace: Brachyloma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brachyscome spp. - replace: Brachyscome sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brasenia spp. - replace: Brasenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Breynia spp. - replace: Breynia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brunonia spp. - replace: Brunonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Brunoniella spp. - replace: Brunoniella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bulbine spp. - replace: Bulbine sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Burchardia spp. - replace: Burchardia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Burnettia spp. - replace: Burnettia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Bursaria spp. - replace: Bursaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Caesia spp. - replace: Caesia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Caladenia spp. - replace: Caladenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calandrinia spp. - replace: Calandrinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Caleana spp. - replace: Caleana sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calectasia spp. - replace: Calectasia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Callistachys spp. - replace: Callistachys sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Callistemon spp. - replace: Callistemon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calocephalus spp. - replace: Calocephalus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calochilus spp. - replace: Calochilus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calochlaena spp. - replace: Calochlaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calomeria spp. - replace: Calomeria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calorophus spp. - replace: Calorophus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calostemma spp. - replace: Calostemma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calotis spp. - replace: Calotis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Calytrix spp. - replace: Calytrix sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cardamine spp. - replace: Cardamine sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Carex spp. - replace: Carex sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Carpha spp. - replace: Carpha sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Carpobrotus spp. - replace: Carpobrotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Caryophyllaceae spp. - replace: Caryophyllaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Cassia spp. - replace: Cassia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cassinia spp. - replace: Cassinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cassytha spp. - replace: Cassytha sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Casuarina spp. - replace: Casuarina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Caustis spp. - replace: Caustis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Celastrus spp. - replace: Celastrus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Celmisia spp. - replace: Celmisia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Centella spp. - replace: Centella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Centipeda spp. - replace: Centipeda sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Centrolepis spp. - replace: Centrolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cephalomanes spp. - replace: Cephalomanes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ceratogyne spp. - replace: Ceratogyne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ceratophyllum spp. - replace: Ceratophyllum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chamaescilla spp. - replace: Chamaescilla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cheilanthes spp. - replace: Cheilanthes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cheiranthera spp. - replace: Cheiranthera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chenopodiaceae spp. - replace: Chenopodiaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Chiloglottis spp. - replace: Chiloglottis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chionochloa spp. - replace: Chionochloa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Choretrum spp. - replace: Choretrum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chorizandra spp. - replace: Chorizandra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Christella spp. - replace: Christella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chrysocephalum spp. - replace: Chrysocephalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Chthonocephalus spp. - replace: Chthonocephalus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cissus spp. - replace: Cissus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cladium spp. - replace: Cladium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Claoxylon spp. - replace: Claoxylon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Clematis spp. - replace: Clematis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Codonocarpus spp. - replace: Codonocarpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Colobanthus spp. - replace: Colobanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Comesperma spp. - replace: Comesperma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Commelina spp. - replace: Commelina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Commersonia spp. - replace: Commersonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Compositae spp. - replace: Asteraceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Conospermum spp. - replace: Conospermum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Convolvulaceae spp. - replace: Convolvulaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Coopernookia spp. - replace: Coopernookia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Coprosma spp. - replace: Coprosma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Coronidium spp. - replace: Coronidium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Correa spp. - replace: Correa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corybas spp. - replace: Corybas sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corymbia spp. - replace: Corymbia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Corynotheca spp. - replace: Corynotheca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Craspedia spp. - replace: Craspedia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cratystylis spp. - replace: Cratystylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Crepidomanes spp. - replace: Crepidomanes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cressa spp. - replace: Cressa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Crinum spp. - replace: Crinum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Crowea spp. - replace: Crowea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cruciferae spp. - replace: Brassicaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Cryptandra spp. - replace: Cryptandra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cryptostylis spp. - replace: Cryptostylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ctenopteris spp. - replace: Ctenopteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cucumis spp. - replace: Cucumis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cullen spp. - replace: Cullen sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cuphonotus spp. - replace: Cuphonotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyanicula spp. - replace: Cyanicula sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyanthillium spp. - replace: Cyanthillium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyathea spp. - replace: Cyathea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyathochaeta spp. - replace: Cyathochaeta sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyclosorus spp. - replace: Cyclosorus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cymbidium spp. - replace: Cymbidium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cymbonotus spp. - replace: Cymbonotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cymbopogon spp. - replace: Cymbopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyperaceae spp. - replace: Cyperaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Cyperus spp. - replace: Cyperus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyphanthera spp. - replace: Cyphanthera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cyrtostylis spp. - replace: Cyrtostylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Cystopteris spp. - replace: Cystopteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dactyloctenium spp. - replace: Dactyloctenium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Damasonium spp. - replace: Damasonium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dampiera spp. - replace: Dampiera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Darwinia spp. - replace: Darwinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Davallia spp. - replace: Davallia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Daviesia spp. - replace: Daviesia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Deeringia spp. - replace: Deeringia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dendrobium spp. - replace: Dendrobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dendrocnide spp. - replace: Dendrocnide sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dendrophthoe spp. - replace: Dendrophthoe sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dennstaedtia spp. - replace: Dennstaedtia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Deparia spp. - replace: Deparia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Deschampsia spp. - replace: Deschampsia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Desmodium spp. - replace: Desmodium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Deyeuxia spp. - replace: Deyeuxia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dianella spp. - replace: Dianella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dichanthium spp. - replace: Dichanthium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dichelachne spp. - replace: Dichelachne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dichondra spp. - replace: Dichondra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dichopogon spp. - replace: Dichopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dicksonia spp. - replace: Dicksonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dicrastylis spp. - replace: Dicrastylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dillwynia spp. - replace: Dillwynia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diplachne spp. - replace: Diplachne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diplarrena spp. - replace: Diplarrena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diplaspis spp. - replace: Diplaspis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diplazium spp. - replace: Diplazium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dipodium spp. - replace: Dipodium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Discaria spp. - replace: Discaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Disphyma spp. - replace: Disphyma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dissocarpus spp. - replace: Dissocarpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Distichlis spp. - replace: Distichlis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Diuris spp. - replace: Diuris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dockrillia spp. - replace: Dockrillia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dodonaea spp. - replace: Dodonaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Doryphora spp. - replace: Doryphora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Drabastrum spp. - replace: Drabastrum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Drosera spp. - replace: Drosera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Drymophila spp. - replace: Drymophila sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dryopoa spp. - replace: Dryopoa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Duboisia spp. - replace: Duboisia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Dysphania spp. - replace: Dysphania sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Echinopogon spp. - replace: Echinopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eclipta spp. - replace: Eclipta sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Einadia spp. - replace: Einadia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Elachanthus spp. - replace: Elachanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Elaeocarpus spp. - replace: Elaeocarpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Elatine spp. - replace: Elatine sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eleocharis spp. - replace: Eleocharis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Elymus spp. - replace: Elymus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Elytrophorus spp. - replace: Elytrophorus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Empodisma spp. - replace: Empodisma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Enchylaena spp. - replace: Enchylaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Enneapogon spp. - replace: Enneapogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Enteropogon spp. - replace: Enteropogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Entolasia spp. - replace: Entolasia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Epacris spp. - replace: Epacris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Epilobium spp. - replace: Epilobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eremophila spp. - replace: Eremophila sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriocaulon spp. - replace: Eriocaulon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriochilus spp. - replace: Eriochilus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriochiton spp. - replace: Eriochiton sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriochlamys spp. - replace: Eriochlamys sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriochloa spp. - replace: Eriochloa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eriostemon spp. - replace: Eriostemon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Erodiophyllum spp. - replace: Erodiophyllum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eucalyptus spp. - replace: Eucalyptus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Euchiton spp. - replace: Euchiton sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eucryphia spp. - replace: Eucryphia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eulalia spp. - replace: Eulalia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Euphrasia spp. - replace: Euphrasia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eupomatia spp. - replace: Eupomatia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eurychorda spp. - replace: Eurychorda sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Euryomyrtus spp. - replace: Euryomyrtus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eustrephus spp. - replace: Eustrephus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Eutaxia spp. - replace: Eutaxia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Evolvulus spp. - replace: Evolvulus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ewartia spp. - replace: Ewartia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Exocarpos spp. - replace: Exocarpos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ficinia spp. - replace: Ficinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Fieldia spp. - replace: Fieldia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Fimbristylis spp. - replace: Fimbristylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Flaveria spp. - replace: Flaveria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Flindersia spp. - replace: Flindersia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Frankenia spp. - replace: Frankenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gahnia spp. - replace: Gahnia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gastrodia spp. - replace: Gastrodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gaultheria spp. - replace: Gaultheria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Geijera spp. - replace: Geijera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Geitonoplesium spp. - replace: Geitonoplesium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Genoplesium spp. - replace: Genoplesium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gentianella spp. - replace: Gentianella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Geococcus spp. - replace: Geococcus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Geraniaceae spp. - replace: Geraniaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Geum spp. - replace: Geum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gingidia spp. - replace: Gingidia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gleichenia spp. - replace: Gleichenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glinus spp. - replace: Glinus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glischrocaryon spp. - replace: Glischrocaryon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glossocardia spp. - replace: Glossocardia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glossodia spp. - replace: Glossodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glossostigma spp. - replace: Glossostigma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glycine spp. - replace: Glycine sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Glycyrrhiza spp. - replace: Glycyrrhiza sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gnaphalium spp. - replace: Gnaphalium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gnephosis spp. - replace: Gnephosis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gompholobium spp. - replace: Gompholobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gomphrena spp. - replace: Gomphrena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gonocarpus spp. - replace: Gonocarpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Goodenia spp. - replace: Goodenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Goodeniaceae spp. - replace: Goodeniaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Goodia spp. - replace: Goodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Grammitis spp. - replace: Grammitis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Grammosolen spp. - replace: Grammosolen sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gratiola spp. - replace: Gratiola sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Grevillea spp. - replace: Grevillea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gunniopsis spp. - replace: Gunniopsis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gymnoschoenus spp. - replace: Gymnoschoenus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gynatrix spp. - replace: Gynatrix sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gypsophila spp. - replace: Gypsophila sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Gyrostemon spp. - replace: Gyrostemon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Haeckeria spp. - replace: Haeckeria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Haegiela spp. - replace: Haegiela sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hakea spp. - replace: Hakea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Halgania spp. - replace: Halgania sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Halophila spp. - replace: Halophila sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Haloragaceae spp. - replace: Haloragaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Haloragis spp. - replace: Haloragis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Haloragodendron spp. - replace: Haloragodendron sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hardenbergia spp. - replace: Hardenbergia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Harmsiodoxa spp. - replace: Harmsiodoxa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hedycarya spp. - replace: Hedycarya sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Helipterum spp. - replace: Helipterum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hemarthria spp. - replace: Hemarthria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hemichroa spp. - replace: Hemichroa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Herpolirion spp. - replace: Herpolirion sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Heterozostera spp. - replace: Heterozostera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hibbertia spp. - replace: Hibbertia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hibiscus spp. - replace: Hibiscus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hierochloe spp. - replace: Hierochloe sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Histiopteris spp. - replace: Histiopteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hookerochloa spp. - replace: Hookerochloa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hornungia spp. - replace: Hornungia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hovea spp. - replace: Hovea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Howittia spp. - replace: Howittia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Huperzia spp. - replace: Huperzia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hyalosperma spp. - replace: Hyalosperma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hybanthus spp. - replace: Hybanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hydrilla spp. - replace: Hydrilla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hymenophyllum spp. - replace: Hymenophyllum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hypolaena spp. - replace: Hypolaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hypolepis spp. - replace: Hypolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Hypoxis spp. - replace: Hypoxis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Imperata spp. - replace: Imperata sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Indigofera spp. - replace: Indigofera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Irenepharsus spp. - replace: Irenepharsus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Iridaceae spp. - replace: Iridaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Isachne spp. - replace: Isachne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Isoetes spp. - replace: Isoetes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Isoetopsis spp. - replace: Isoetopsis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Isolepis spp. - replace: Isolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Isopogon spp. - replace: Isopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Isotoma spp. - replace: Isotoma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ixiochlamys spp. - replace: Ixiochlamys sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ixiolaena spp. - replace: Ixiolaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ixodia spp. - replace: Ixodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Jacksonia spp. - replace: Jacksonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Jasminum spp. - replace: Jasminum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Juncus spp. - replace: Juncus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Kelleria spp. - replace: Kelleria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Kennedia spp. - replace: Kennedia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Kippistia spp. - replace: Kippistia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Koeleria spp. - replace: Koeleria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Korthalsella spp. - replace: Korthalsella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Kunzea spp. - replace: Kunzea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lachnagrostis spp. - replace: Lachnagrostis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lagenophora spp. - replace: Lagenophora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Landoltia spp. - replace: Landoltia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lasiopetalum spp. - replace: Lasiopetalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lastreopsis spp. - replace: Lastreopsis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lawrencia spp. - replace: Lawrencia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Laxmannia spp. - replace: Laxmannia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leiocarpa spp. - replace: Leiocarpa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leionema spp. - replace: Leionema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lemna spp. - replace: Lemna sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lemooria spp. - replace: Lemooria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepidobolus spp. - replace: Lepidobolus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepidosperma spp. - replace: Lepidosperma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leporella spp. - replace: Leporella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptecophylla spp. - replace: Leptecophylla sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptinella spp. - replace: Leptinella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptocarpus spp. s.l. - replace: Leptocarpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptoceras spp. - replace: Leptoceras sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptochloa spp. - replace: Leptochloa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptomeria spp. - replace: Leptomeria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptorhynchos spp. - replace: Leptorhynchos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptospermum spp. - replace: Leptospermum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leptostigma spp. - replace: Leptostigma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lepyrodia spp. - replace: Lepyrodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lespedeza spp. - replace: Lespedeza sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leucochrysum spp. - replace: Leucochrysum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leucophyta spp. - replace: Leucophyta sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Leucopogon spp. - replace: Leucopogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Levenhookia spp. - replace: Levenhookia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Libertia spp. - replace: Libertia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lilaeopsis spp. - replace: Lilaeopsis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Limosella spp. - replace: Limosella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lindsaea spp. - replace: Lindsaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lipocarpha spp. - replace: Lipocarpha sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lissanthe spp. - replace: Lissanthe sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Livistona spp. - replace: Livistona sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lobelia spp. - replace: Lobelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Logania spp. - replace: Logania sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lomandra spp. - replace: Lomandra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lomatia spp. - replace: Lomatia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Loranthaceae spp. - replace: Loranthaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Luzula spp. - replace: Luzula sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lycium spp. - replace: Lycium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lycopodiella spp. - replace: Lycopodiella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lycopodium spp. - replace: Lycopodium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lycopus spp. - replace: Lycopus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lyperanthus spp. - replace: Lyperanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lysiana spp. - replace: Lysiana sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Lythrum spp. - replace: Lythrum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Maireana spp. - replace: Maireana sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Malacocera spp. - replace: Malacocera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Malvaceae spp. - replace: Malvaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Marianthus spp. - replace: Marianthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Marsdenia spp. - replace: Marsdenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Marsilea spp. - replace: Marsilea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Mazus spp. - replace: Mazus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Melaleuca spp. - replace: Melaleuca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Melichrus spp. - replace: Melichrus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Melicytus spp. - replace: Melicytus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Menkea spp. - replace: Menkea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Micrantheum spp. - replace: Micrantheum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microcybe spp. - replace: Microcybe sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microlaena spp. - replace: Microlaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microlepidium spp. - replace: Microlepidium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Micromyrtus spp. - replace: Micromyrtus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microseris spp. - replace: Microseris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microsorum spp. - replace: Microsorum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Microtis spp. - replace: Microtis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Millotia spp. - replace: Millotia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Mimulus spp. - replace: Mimulus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Minuria spp. - replace: Minuria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Mirbelia spp. - replace: Mirbelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Mollugo spp. - replace: Mollugo sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Monotaxis spp. - replace: Monotaxis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Monotoca spp. - replace: Monotoca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Montia spp. - replace: Montia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Morinda spp. - replace: Morinda sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Muehlenbeckia spp. - replace: Muehlenbeckia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Muellerina spp. - replace: Muellerina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Myoporum spp. - replace: Myoporum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Myosurus spp. - replace: Myosurus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Myriocephalus spp. - replace: Myriocephalus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Myriophyllum spp. - replace: Myriophyllum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Myrsine spp. - replace: Myrsine sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Najas spp. - replace: Najas sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nematolepis spp. - replace: Nematolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Neobassia spp. - replace: Neobassia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nertera spp. - replace: Nertera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nestegis spp. - replace: Nestegis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Neurachne spp. - replace: Neurachne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nitraria spp. - replace: Nitraria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Notelaea spp. - replace: Notelaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nothofagus spp. - replace: Nothofagus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Notothixos spp. - replace: Notothixos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Nymphoides spp. - replace: Nymphoides sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Olax spp. - replace: Olax sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Olearia spp. - replace: Olearia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Omphacomeria spp. - replace: Omphacomeria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Omphalolappula spp. - replace: Omphalolappula sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Opercularia spp. - replace: Opercularia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ophioglossum spp. - replace: Ophioglossum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oplismenus spp. - replace: Oplismenus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orchidaceae spp. - replace: Orchidaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Oreobolus spp. - replace: Oreobolus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orites spp. - replace: Orites sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orobanche spp. - replace: Orobanche sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orthoceras spp. - replace: Orthoceras sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Orthrosanthus spp. - replace: Orthrosanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oschatzia spp. - replace: Oschatzia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Osteocarpum spp. - replace: Osteocarpum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ottelia spp. - replace: Ottelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oxalis spp. - replace: Oxalis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oxychloris spp. - replace: Oxychloris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Oxylobium spp. - replace: Oxylobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ozothamnus spp. - replace: Ozothamnus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pachymitus spp. - replace: Pachymitus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pandorea spp. - replace: Pandorea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Panicum spp. - replace: Panicum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Paracaleana spp. - replace: Caleana sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Parantennaria spp. - replace: Parantennaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Parietaria spp. - replace: Parietaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Parsonsia spp. - replace: Parsonsia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Paspalidium spp. - replace: Paspalidium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Passiflora spp. - replace: Passiflora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Patersonia spp. - replace: Patersonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pellaea spp. - replace: Pellaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pentachondra spp. - replace: Pentachondra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pentapogon spp. - replace: Pentapogon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Persicaria spp. - replace: Persicaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phebalium spp. - replace: Phebalium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pheladenia spp. - replace: Pheladenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Philotheca spp. - replace: Philotheca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Philydrum spp. - replace: Philydrum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phlegmatospermum spp. - replace: Phlegmatospermum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phragmites spp. - replace: Phragmites sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phyllangium spp. - replace: Phyllangium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phylloglossum spp. - replace: Phylloglossum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Phyllota spp. - replace: Phyllota sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Picris spp. - replace: Picris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pilularia spp. - replace: Pilularia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pimelea spp. - replace: Pimelea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Plagiobothrys spp. - replace: Plagiobothrys sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Plantago spp. - replace: Plantago sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Platycerium spp. - replace: Platycerium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Platylobium spp. - replace: Platylobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Platysace spp. - replace: Platysace sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Plectorrhiza spp. - replace: Plectorrhiza sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Plectranthus spp. - replace: Plectranthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pleurosorus spp. - replace: Asplenium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Plinthanthesis spp. - replace: Plinthanthesis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pneumatopteris spp. - replace: Pneumatopteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Podolepis spp. - replace: Podolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Podolobium spp. - replace: Podolobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Podotheca spp. - replace: Podotheca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pogonolepis spp. - replace: Pogonolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Polycalymma spp. - replace: Polycalymma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Polygala spp. - replace: Polygala sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Polygonaceae spp. - replace: Polygonaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Polyscias spp. - replace: Polyscias sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Polystichum spp. - replace: Polystichum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pomaderris spp. - replace: Pomaderris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pomax spp. - replace: Pomax sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Poranthera spp. - replace: Poranthera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Portulaca spp. - replace: Portulaca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Posidonia spp. - replace: Posidonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Potamogeton spp. - replace: Potamogeton sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Prasophyllum spp. - replace: Prasophyllum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Prostanthera spp. - replace: Prostanthera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pseudanthus spp. - replace: Pseudanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pseuderanthemum spp. - replace: Pseuderanthemum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pseudognaphalium spp. - replace: Pseudognaphalium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pseudoraphis spp. - replace: Pseudoraphis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Psilotum spp. - replace: Psilotum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Psoralea spp. - replace: Psoralea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Psychotria spp. - replace: Psychotria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Psychrophila spp. - replace: Psychrophila sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pteridium spp. - replace: Pteridium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pteris spp. - replace: Pteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pterocaulon spp. - replace: Pterocaulon sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pterostylis spp. - replace: Pterostylis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ptilothrix spp. - replace: Ptilothrix sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ptilotus spp. - replace: Ptilotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Puccinellia spp. - replace: Puccinellia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pultenaea spp. - replace: Pultenaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pycnosorus spp - replace: Pycnosorus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pyrorchis spp. - replace: Pyrorchis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Pyrrosia spp. - replace: Pyrrosia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Quinetia spp. - replace: Quinetia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Radyera spp. - replace: Radyera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ranunculus spp. - replace: Ranunculus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rhagodia spp. - replace: Rhagodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rhodanthe spp. - replace: Rhodanthe sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rhynchospora spp. - replace: Rhynchospora sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rhytidosporum spp. - replace: Rhytidosporum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Richea spp. - replace: Richea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ricinocarpos spp. - replace: Ricinocarpos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ripogonum spp. - replace: Ripogonum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rumohra spp. - replace: Rumohra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Ruppia spp. - replace: Ruppia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rutidosis spp. - replace: Rutidosis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Rytidosperma spp. - replace: Rytidosperma sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sagina spp. - replace: Sagina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Salsola spp. - replace: Salsola sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sambucus spp. - replace: Sambucus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Samolus spp. - replace: Samolus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Santalaceae spp. - replace: Santalaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Santalum spp. - replace: Santalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sarcochilus spp. - replace: Sarcochilus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sarcocornia spp. - replace: Salicornia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sarcopetalum spp. - replace: Sarcopetalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sarcozona spp. - replace: Sarcozona sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sauropus spp. - replace: Sauropus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scaevola spp. - replace: Scaevola sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schelhammera spp. - replace: Schelhammera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schenkia spp. - replace: Schenkia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schizacme spp. - replace: Schizacme sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schizaea spp. - replace: Schizaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schoenia spp. - replace: Schoenia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schoenoplectus spp. - replace: Schoenoplectus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Schoenus spp. - replace: Schoenus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scirpus spp. - replace: Scirpus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scleranthus spp. - replace: Scleranthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scleria spp. - replace: Scleria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scleroblitum spp. - replace: Scleroblitum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sclerolaena spp. - replace: Sclerolaena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Scutellaria spp. - replace: Scutellaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sebaea spp. - replace: Sebaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Selaginella spp. - replace: Selaginella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Selliera spp. - replace: Selliera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sesbania spp. - replace: Sesbania sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sicyos spp. - replace: Sicyos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sigesbeckia spp. - replace: Sigesbeckia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Siloxerus spp. - replace: Siloxerus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Smilax spp. - replace: Smilax sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Solenogyne spp. - replace: Solenogyne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sowerbaea spp. - replace: Sowerbaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sparganium spp. - replace: Sparganium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sphaerolobium spp. - replace: Sphaerolobium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sphaeromorphaea spp. - replace: Sphaeromorphaea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Spinifex spp. - replace: Spinifex sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Spiranthes spp. - replace: Spiranthes sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Spirodela spp. - replace: Spirodela sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sporadanthus spp. - replace: Sporadanthus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sprengelia spp. - replace: Sprengelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Spyridium spp. - replace: Spyridium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stackhousia spp. - replace: Stackhousia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stemodia spp. - replace: Stemodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stenanthemum spp. - replace: Stenanthemum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stenopetalum spp. - replace: Stenopetalum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stephania spp. - replace: Stephania sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Sticherus spp. - replace: Sticherus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stuartina spp. - replace: Stuartina sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stylidium spp. - replace: Stylidium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Stypandra spp. - replace: Stypandra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Styphelia spp. - replace: Styphelia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Swainsona spp. - replace: Swainsona sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Symphionema spp. - replace: Symphionema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Symplocos spp. - replace: Symplocos sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Synaptantha spp. - replace: Synaptantha sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Syzygium spp. - replace: Syzygium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Taraxacum spp. - replace: Taraxacum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tasmannia spp. - replace: Tasmannia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tecticornia spp. - replace: Tecticornia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Telopea spp. - replace: Telopea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Templetonia spp. - replace: Templetonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tetragonia spp. - replace: Tetragonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tetraria spp. - replace: Tetraria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tetrarrhena spp. - replace: Tetrarrhena sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tetratheca spp. - replace: Tetratheca sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Teucrium spp. - replace: Teucrium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thelionema spp. - replace: Thelionema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thelymitra spp. - replace: Thelymitra sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thelypteris spp. - replace: Thelypteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Themeda spp. - replace: Themeda sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thesium spp. - replace: Thesium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thismia spp. - replace: Thismia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thomasia spp. - replace: Thomasia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Threlkeldia spp. - replace: Threlkeldia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thryptomene spp. - replace: Thryptomene sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thynninorchis spp. - replace: Thynninorchis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thyridolepis spp. - replace: Thyridolepis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Thysanotus spp. - replace: Thysanotus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tmesipteris spp. - replace: Tmesipteris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Todea spp. - replace: Todea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trachymene spp. - replace: Trachymene sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tragus spp. - replace: Tragus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trema spp. - replace: Trema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trianthema spp. - replace: Trianthema sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tribulus spp. - replace: Tribulus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trichanthodium spp. - replace: Trichanthodium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tricoryne spp. - replace: Tricoryne sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tricostularia spp. - replace: Tricostularia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Triglochin spp. - replace: Triglochin sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trigonella spp. - replace: Trigonella sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Triodia spp. - replace: Triodia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Triptilodiscus spp. - replace: Triptilodiscus sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Triraphis spp. - replace: Triraphis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trisetum spp. - replace: Trisetum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tristaniopsis spp. - replace: Tristaniopsis sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trithuria spp. - replace: Trithuria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trochocarpa spp. - replace: Trochocarpa sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Trymalium spp. - replace: Trymalium sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Tylophora spp. - replace: Vincetoxicum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Urtica spp. - replace: Urtica sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Utricularia spp. - replace: Utricularia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Vallisneria spp. - replace: Vallisneria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Velleia spp. - replace: Velleia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Vernonia spp. - replace: Vernonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Villarsia spp. - replace: Villarsia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Viminaria spp. - replace: Viminaria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Vittadinia spp. - replace: Vittadinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wahlenbergia spp. - replace: Wahlenbergia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Waitzia spp. - replace: Waitzia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Walwhalleya spp. - replace: Walwhalleya sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Westringia spp. - replace: Westringia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wilsonia spp. - replace: Wilsonia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wittsteinia spp. - replace: Wittsteinia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wolffia spp. - replace: Wolffia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Wurmbea spp. - replace: Wurmbea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Xanthorrhoea spp. - replace: Xanthorrhoea sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Xanthosia spp. - replace: Xanthosia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Xerochrysum spp. - replace: Xerochrysum sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Xyris spp. - replace: Xyris sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zaleya spp. - replace: Zaleya sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zieria spp. - replace: Zieria sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zornia spp. - replace: Zornia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zostera spp. - replace: Zostera sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zoysia spp. - replace: Zoysia sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus -- find: Zygophyllaceae spp. - replace: Zygophyllaceae sp. [White_2020] - reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: family -- find: Zygophyllum spp. - replace: Zygophyllum sp. [White_2020] + taxonomic_resolution: genus +- find: Abutilon spp. + replace: Abutilon sp. [White_2020] reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Acacia acinacea s.l. replace: Acacia acinacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia acinacea s.s. replace: Acacia acinacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia ancistrophylla/sclerophylla replace: Acacia sp. [Acacia ancistrophylla/sclerophylla; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3447,11 +655,11 @@ taxonomic_updates: replace: Acacia decora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia decora subsp. squamatus replace: Acacia squamata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia fimbriata x pravissima replace: Acacia x [Acacia fimbriata x pravissima; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -3476,19 +684,19 @@ taxonomic_updates: replace: Acacia leprosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia leprosa s.s. replace: Acacia leprosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Acacia melvillei x Acacia homalophylla - replace: Acacia x [Acacia melvillei x Acacia homalophylla; White_2020] + taxonomic_resolution: species +- find: Acacia melvillei X homalophylla + replace: Acacia x [Acacia melvillei X homalophylla; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Acacia melvillei X homalophylla - replace: Acacia x [Acacia melvillei X homalophylla; White_2020] +- find: Acacia melvillei x Acacia homalophylla + replace: Acacia x [Acacia melvillei x Acacia homalophylla; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus @@ -3496,21 +704,21 @@ taxonomic_updates: replace: Acacia microcarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia microcarpa s.s. replace: Acacia microcarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia nano-dealbata replace: Acacia nanodealbata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia paradoxa hybrid replace: Acacia paradoxa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia provincialis/retinodes replace: Acacia sp. [Acacia provincialis/retinodes; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3520,30 +728,35 @@ taxonomic_updates: replace: Acacia retinodes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia terminalis subsp. botrycephala replace: Acacia terminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia terminalis subsp. terminalis replace: Acacia terminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia verniciflua (1-nerved variant) replace: Acacia verniciflua reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia verniciflua (typical variant) replace: Acacia verniciflua reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia verniciflua s.l. replace: Acacia verniciflua reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acaena 'X anserovina' + replace: Acaena x anserovina + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species - find: Acaena agnipila/ovina complex replace: Acaena sp. [Acaena agnipila/ovina complex; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3553,43 +766,54 @@ taxonomic_updates: replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species -- find: Acaena 'X anserovina' - replace: Acaena x anserovina - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acaena spp. + replace: Acaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Acianthus exsertus s.l. replace: Acianthus exsertus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acianthus exsertus s.s. replace: Acianthus exsertus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acianthus spp. + replace: Acianthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aciphylla spp. + replace: Aciphylla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Acmena +C9:D16smithii Rheophytic race replace: Syzygium sp. [Acmena +C9:D16smithii Rheophytic race; White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus known by APC (2022-11-22) taxonomic_resolution: genus +- find: Acmena +C9:D16smithii Rheophytic race + replace: Acmena smithii Rheophytic race + reason: manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: genus - find: Acmena smithii (Rheophytic race) replace: Acmena smithii Rheophytic race reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena smithii (Small-leaved Race) replace: Acmena smithii Small-leaved race reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena smithii (Type form) replace: Acmena smithii Type form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena smithii Rheophytic race replace: Acmena +C9:D16smithii Rheophytic race reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena sp. replace: Syzygium sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -3600,31 +824,71 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Acronychia spp. + replace: Acronychia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Acrothamnus spp. + replace: Acrothamnus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Acrotriche divaricata subsp. group B replace: Acrotriche divaricata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Acrotriche spp. + replace: Acrotriche sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Actinobole spp. + replace: Actinobole sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Actinotus spp. + replace: Actinotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Actites spp. + replace: Actites sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Adenanthos spp. + replace: Adenanthos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Adiantum spp. + replace: Adiantum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Adriana quadripartita (glabrous form) replace: Adriana quadripartita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Adriana quadripartita (pubescent form) replace: Adriana quadripartita reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Adriana spp. + replace: Adriana sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Adriana urticoides var. urticoides (glabrous form) replace: Adriana urticoides var. urticoides reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Adriana urticoides var. urticoides (pubescent form) replace: Adriana urticoides var. urticoides reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Aegiceras spp. + replace: Aegiceras sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Agrostis aff. hiemalis replace: Agrostis sp. [Agrostis aff. hiemalis; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -3634,27 +898,51 @@ taxonomic_updates: replace: Agrostis avenacea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis billardieri var. replace: Agrostis billardieri reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis hiemalis replace: Agrostis 'hiemalis' reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis parviflora s.l. replace: Agrostis parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Agrostis parviflora s.s. replace: Agrostis parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Aizoaceae spp. + replace: Aizoaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Ajuga spp. + replace: Ajuga sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Alchemilla spp. + replace: Alchemilla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Alectryon spp. + replace: Alectryon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Alisma spp. + replace: Alisma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Allittia spp. + replace: Allittia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Allocasuarina misera/paradoxa replace: Allocasuarina sp. [Allocasuarina misera/paradoxa; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3664,40 +952,88 @@ taxonomic_updates: replace: Allocasuarina pusilla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina pusilla s.s. replace: Allocasuarina pusilla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Allocasuarina spp. + replace: Allocasuarina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Allocasuarina stricta replace: Allocasuarina striata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Almaleea spp. + replace: Almaleea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Alternanthera denticulata s.l. replace: Alternanthera denticulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera denticulata s.s. replace: Alternanthera denticulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera sp. 1 (Plains) replace: Alternanthera sp. (Plains) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Alternanthera spp. + replace: Alternanthera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Althenia sp replace: Althenia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Alyxia spp. + replace: Alyxia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ammannia spp. + replace: Ammannia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ammobium spp. + replace: Ammobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Amperea spp. + replace: Amperea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Amphibolis spp. + replace: Amphibolis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Amphibromus spp. + replace: Amphibromus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Amphipogon spp. + replace: Amphipogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Amyema pendula subsp. pendula (s.s.) replace: Amyema pendula subsp. pendula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Amyema spp. + replace: Amyema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Anacampseros spp. + replace: Anacampseros sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Androcalva sp replace: Androcalva sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -3711,43 +1047,119 @@ taxonomic_updates: - find: Angianthus milenei replace: Angianthus milnei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Angianthus spp. + replace: Angianthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Angophora floribunda x leiocarpa replace: Angophora x [Angophora floribunda x leiocarpa; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Angophora spp. + replace: Angophora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Anisopogon spp. + replace: Anisopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Anogramma spp. + replace: Anogramma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Anthocercis spp. + replace: Anthocercis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Anthosachne scabra s.l. replace: Anthosachne scabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Anthosachne spp. + replace: Anthosachne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aotus spp. + replace: Aotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Apalochlamys spp. + replace: Apalochlamys sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aphanes spp. + replace: Aphanes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aphanopetalum spp. + replace: Aphanopetalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aphelia spp. + replace: Aphelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Apium prostratum subsp. prostratum var. filiforme replace: Apium prostratum var. filiforme reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Apium prostratum subsp. prostratum var. prostratum replace: Apium prostratum subsp. prostratum reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum var. replace: Apium prostratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Apium spp. + replace: Apium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Apodasmia spp. + replace: Apodasmia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Arabidella spp. + replace: Arabidella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Argentipallium spp. + replace: Argentipallium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Argyrotegium fordianum/mackayi/poliochlorum spp. agg. replace: Argyrotegium sp. [Argyrotegium fordianum/mackayi/poliochlorum sp. agg.; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Argyrotegium spp. + replace: Argyrotegium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Aristida spp. + replace: Aristida sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Arrhenechthites spp. + replace: Arrhenechthites sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Arthrochilus spp. + replace: Arthrochilus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Arthropdium species A replace: Arthropodium sp. A reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium aff. minus replace: Arthropodium sp. [Arthropodium aff. minus; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -3767,12 +1179,12 @@ taxonomic_updates: replace: Arthropodium milleflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium milleflorum s.s. replace: Arthropodium milleflorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. (Gippsland Plain) replace: Arthropodium sp. [Arthropodium sp. (Gippsland Plain); White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -3782,17 +1194,17 @@ taxonomic_updates: replace: Arthropodium sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. 2 (greenish flowers) replace: Arthropodium sp. 2 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium sp. 3 (aff. strictum) replace: Arthropodium sp. 3 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium spp. (s.s.) replace: Arthropodium sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -3802,12 +1214,16 @@ taxonomic_updates: replace: Arthropodium strictum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Arthropodium strictum s.s. replace: Arthropodium strictum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Arthropteris spp. + replace: Arthropteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Asperula aff. euryphylla replace: Asperula sp. [Asperula aff. euryphylla; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -3818,44 +1234,92 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Asperula spp. + replace: Asperula sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Asplenium aff. bulbiferum replace: Asplenium sp. [Asplenium aff. bulbiferum; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Asplenium spp. + replace: Asplenium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Astelia spp. + replace: Astelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Asteridea spp. + replace: Asteridea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Asterolasia spp. + replace: Asterolasia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Astrebla spp. + replace: Astrebla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Astroloma spp. + replace: Astroloma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Astrotricha asperifolia s.l. replace: Astrotricha asperifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha asperifolia s.s. replace: Astrotricha asperifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha ledifolia s.l. replace: Astrotricha ledifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha ledifolia s.s. replace: Astrotricha ledifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotricha sp. nov. B replace: Astrotricha sp. B reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Astrotricha spp. + replace: Astrotricha sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Atherosperma spp. + replace: Atherosperma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Atriplex spp. + replace: Atriplex sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Atriplex vessicaria subsp. vesicaria replace: Atriplex vesicaria subsp. vesicaria reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Australina spp. + replace: Australina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Australopyrum aff. velutinum replace: Australopyrum sp. [Australopyrum aff. velutinum; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Australopyrum spp. + replace: Australopyrum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: AustroRytidosperma procera replace: Rytidosperma sp. [AustroRytidosperma procera; White_2020] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -3864,16 +1328,29 @@ taxonomic_updates: - find: AustroRytidosperma racemosa replace: Rytidosperma racemosum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: AustroRytidosperma sp. replace: Rytidosperma sp. [AustroRytidosperma sp.; White_2020] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Austrobryonia spp. + replace: Austrobryonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Austrocynoglossum sp. + replace: Hackelia sp. [White_2020] + reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level + alignment with `APC known` name (2022-11-23) + taxonomic_resolution: genus +- find: Austromyrtus spp. + replace: Austromyrtus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Austrostipa 0anulla replace: Austrostipa nullanulla reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa acrociliata group/elegantissima replace: Austrostipa sp. [Austrostipa acrociliata group/elegantissima; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3888,7 +1365,7 @@ taxonomic_updates: replace: Austrostipa mollis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austrostipa scabra/nitida/nodosa spp. agg. replace: Austrostipa sp. [Austrostipa scabra/nitida/nodosa sp. agg.; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -3909,6 +1386,18 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Austrostipa spp. + replace: Austrostipa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Avicennia spp. + replace: Avicennia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Azolla spp. + replace: Azolla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Babbagia spp. replace: Osteocarpum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -3919,31 +1408,51 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Babingtonia spp. + replace: Babingtonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Babingtonia virgata replace: Babingtonia virgata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Backhousia spp. + replace: Backhousia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Baeckea sp. aff. virgata replace: Baeckea sp. [Baeckea sp. aff. virgata; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Baeckea spp. + replace: Baeckea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Baeckea utilis s.l. replace: Baeckea utilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baeckea utilis s.s. replace: Baeckea utilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ballantinia spp. + replace: Ballantinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Baloskion spp. + replace: Baloskion sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Banksia cunninghamii subsp. a sensu harden (1991) replace: Banksia cunninghamii subsp. A reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia marginata x Banksia paludosa subsp. subsp. astrolux replace: Banksia x [Banksia marginata x Banksia paludosa subsp. subsp. astrolux; White_2020] @@ -3955,145 +1464,233 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Banksia spp. + replace: Banksia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Batrachium spp. replace: Ranunculus sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Bauera spp. + replace: Bauera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Baumea rubiginosa s.l. replace: Baumea rubiginosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baumea rubiginosa s.s. replace: Baumea rubiginosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Baumea spp. + replace: Machaerina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Beaufortia spp. + replace: Beaufortia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Bedfordia spp. + replace: Bedfordia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Bergia spp. + replace: Bergia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Bertya spp. + replace: Bertya sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bertya tasmanica Glabrous ovary variant replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica Golden-haired variant replace: Bertya tasmanica var. Golden hairs (P.C.Jobson 4616 et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica subsp. vestita (fine-haired variant) replace: Bertya tasmanica var. Fine hairs (I.Crawford 3165) reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica subsp. vestita (glabrous ovary variant replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bertya tasmanica subsp. vestita (typical variant) replace: Bertya tasmanica var. Typical variant (R.J.F.Henderson & G.Turpin H3277) reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas -- find: Bertya tasmanica var. Golden hairs + taxonomic_resolution: varietas +- find: Bertya tasmanica var. 'Golden-haired' replace: Bertya tasmanica var. Golden hairs (P.C.Jobson 4616 et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas -- find: Bertya tasmanica var. 'Golden-haired' + taxonomic_resolution: varietas +- find: Bertya tasmanica var. Golden hairs replace: Bertya tasmanica var. Golden hairs (P.C.Jobson 4616 et al.) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Berula spp. + replace: Berula sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Beyeria lechenaultii 'Broad-leaved variant' replace: Beyeria lechenaultii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beyeria lechenaultii 'Typical variant' replace: Beyeria lechenaultii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Beyeria spp. + replace: Beyeria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Billardiera cymosa s.l. replace: Billardiera cymosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera cymosa s.s. replace: Billardiera cymosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera scandens s.l. replace: Billardiera scandens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera scandens s.s. replace: Billardiera scandens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Billardiera spp. + replace: Billardiera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Blechnum sp replace: Blechnum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Blechnum spp. + replace: Blechnum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Blennospora spp. + replace: Blennospora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Boerhavia sp. (St George A.Hill AQ399299) replace: Boerhavia sp. St George (A.Hill AQ399299) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Boerhavia spp. + replace: Boerhavia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Bolboschoenus spp. + replace: Bolboschoenus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Boraginaceae spp. + replace: Boraginaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Boronia spp. + replace: Boronia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Borya spp. + replace: Borya sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bossiaea foliosa (distichous variant) replace: Bossiaea foliosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Bossiaea foliosa (typical variant) replace: Bossiaea foliosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Bossiaea prostrata x Bossiaea buxifolia - replace: Bossiaea x [Bossiaea prostrata x Bossiaea buxifolia; White_2020] + taxonomic_resolution: species +- find: Bossiaea prostrata X buxifolia + replace: Bossiaea x [Bossiaea prostrata X buxifolia; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Bossiaea prostrata X buxifolia - replace: Bossiaea x [Bossiaea prostrata X buxifolia; White_2020] +- find: Bossiaea prostrata x Bossiaea buxifolia + replace: Bossiaea x [Bossiaea prostrata x Bossiaea buxifolia; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Bossiaea spp. + replace: Bossiaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bothriochloa decipiens var. cloncurriensis replace: Bothriochloa decipiens var. cloncurrensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Bothriochloa spp. + replace: Bothriochloa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Botrychium spp. + replace: Botrychium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Brachychiton spp. + replace: Brachychiton sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Brachycome ciliaris var. ciliaris replace: Brachyscome ciliaris var. ciliaris reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachycome formosa replace: Brachyscome formosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachycome heterodonta var. A replace: Brachycome heterodonta var. A. reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachycome heterodonta var. heterodonta replace: Brachyscome heterodonta reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachycome parvula var. parvula replace: Brachyscome parvula var. parvula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachycome sp. B replace: Brachyscome sp. B reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Brachyloma spp. + replace: Brachyloma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Brachyscome aff. gracilis (Kings Billabong) replace: Brachyscome sp. [Brachyscome aff. gracilis (Kings Billabong); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4103,96 +1700,141 @@ taxonomic_updates: replace: Brachyscome angustifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome debilis s.l. replace: Brachyscome debilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome debilis s.s. replace: Brachyscome debilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome heterodonta var. A replace: Brachyscome heterodonta var. A. reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Brachyscome heterodonta var. chrysoglossa replace: Brachyscome heterodonta reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome heterodonta var. heterodonta replace: Brachyscome heterodonta reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Brachyscome lineariloba/perpusilla replace: Brachyscome sp. [Brachyscome lineariloba/perpusilla; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Brachyscome spp. + replace: Brachyscome sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bracteantha spp. replace: Xerochrysum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Brasenia spp. + replace: Brasenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Brassica sp. 1 replace: Brassica sp. [Brassica sp. 1; White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus +- find: Breynia spp. + replace: Breynia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Brunonia spp. + replace: Brunonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Brunoniella spp. + replace: Brunoniella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bulbine aff. bulbosa (Montane Swamps) replace: Bulbine sp. [Bulbine aff. bulbosa (Montane Swamps); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Bulbine spp. + replace: Bulbine sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bulboschoenus fluviatilus replace: Bolboschoenus fluviatilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Burchardia spp. + replace: Burchardia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Burnettia spp. + replace: Burnettia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Bursaria spinosa subsp. lasiophylla var. atriplicina replace: Bursaria lasiophylla var. atriplicina reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. lasiophylla var. lasiophylla replace: Bursaria lasiophylla var. lasiophylla reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. lasiophylla var. parvifolia replace: Bursaria lasiophylla var. parvifolia reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. spinosa var. australis replace: Bursaria spinosa var. australis reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. spinosa var. macrophylla replace: Bursaria spinosa var. macrophylla reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. spinosa var. microphylla replace: Bursaria spinosa var. microphylla reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. spinosa var. obovata replace: Bursaria spinosa var. obovata reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa subsp. spinosa var. spinosa replace: Bursaria spinosa var. spinosa reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Bursaria spp. + replace: Bursaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Caesia spp. + replace: Caesia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Caladenia X cardiochila x reticulata + replace: Caladenia x [Caladenia X cardiochila x reticulata; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Caladenia aff. catenata (South Gippsland) replace: Caladenia sp. [Caladenia aff. catenata (South Gippsland); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4226,81 +1868,81 @@ taxonomic_updates: - find: Caladenia carnea complex replace: Caladenia carnea reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia carnea s.s. replace: Caladenia carnea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia carnea sensu Entwisle (1994) replace: Caladenia carnea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia carnea sensu Willis (1970) replace: Caladenia carnea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia catenata s.l. replace: Caladenia catenata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia catenata s.s. replace: Caladenia catenata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia catenata var. warnervalensis replace: Caladenia catenata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia dilatata s.l. replace: Caladenia dilatata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia dilatata s.s. replace: Caladenia dilatata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia filamentosa s.l. replace: Caladenia filamentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia filamentosa s.s. replace: Caladenia filamentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia patersonii s.l. replace: Caladenia patersonii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia patersonii s.s. replace: Caladenia patersonii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia peysleyi replace: Caladenia peisleyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia reticulata s.l. replace: Caladenia reticulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia reticulata s.s. replace: Caladenia reticulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Caladenia sp. aff. fragrantissima (Central Victoria) replace: Caladenia sp. [Caladenia sp. aff. fragrantissima (Central Victoria); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4311,30 +1953,49 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Caladenia spp. + replace: Caladenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Caladenia testacea s.l. replace: Caladenia testacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Caladenia X cardiochila x reticulata - replace: Caladenia x [Caladenia X cardiochila x reticulata; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) - taxonomic_resolution: genus + taxonomic_resolution: species - find: Calandrinia calyptrata/eremaea replace: Calandrinia sp. [Calandrinia calyptrata/eremaea; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Calandrinia spp. + replace: Calandrinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Caleana spp. + replace: Caleana sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Calectasia spp. + replace: Calectasia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Callistachys spp. + replace: Callistachys sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Callistemon c.f. sieberi replace: Callistemon sieberi reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Callistemon spp. + replace: Callistemon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Callitris glaucophylla - C. verrucosa replace: Callitris sp. [Callitris glaucophylla - Callitris verrucosa; White_2020] reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Callitris glaucophylla x verrucosa replace: Callitris x [Callitris glaucophylla x verrucosa; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -4344,27 +2005,55 @@ taxonomic_updates: replace: Callitris preissii var. murrayensis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Callitris rhomboidea subsp. 'dwarf blue' replace: Callitris rhomboidea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Callitris spp. + replace: Callitris sp. [White_2020] + reason: Manual alignment to correct genus syntax (Elizabeth Wenk, 2022-11-30) + taxonomic_resolution: genus +- find: Calocephalus spp. + replace: Calocephalus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calochilus sp. aff. campestris (Moondarra) replace: Calochilus sp. [Calochilus sp. aff. campestris (Moondarra); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Calochilus spp. + replace: Calochilus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Calochlaena spp. + replace: Calochlaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Calomeria spp. + replace: Calomeria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Calorophus spp. + replace: Calorophus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calostemma purpureum s.l. replace: Calostemma purpureum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calostemma purpureum s.s. replace: Calostemma purpureum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Calostemma spp. + replace: Calostemma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calotis aff. hispidula replace: Calotis sp. [Calotis aff. hispidula; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4375,75 +2064,87 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Calotis spp. + replace: Calotis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calytrix sp replace: Calytrix sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Calytrix spp. + replace: Calytrix sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Calytrix tetragona subsp. broad petalled form replace: Calytrix tetragona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix tetragona subsp. narrow petalled form replace: Calytrix tetragona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calytrix tetragona subsp. prostrate form replace: Calytrix tetragona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cardamine gunnii variant Type variant + replace: Cardamine gunnii, type variant + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) + taxonomic_resolution: species - find: Cardamine gunnii variant spathulate-leaved replace: Cardamine gunnii, spathulate-leaved variant reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Cardamine gunnii variant Type variant - replace: Cardamine gunnii, type variant - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine lilacina (intermedia variant) replace: Cardamine lilacina, 'intermedia' variant reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine lilacina (robust alpine snow-patch variant) replace: Cardamine lilacina, robust alpine snow-patch variant reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine lilacina (slender alpine-subalpine variant) replace: Cardamine lilacina, slender alpine-subalpine variant reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine lilacina (type variant) replace: Cardamine lilacina, type variant reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine paucijuga s.s. (forest form) replace: Cardamine paucijuga reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine paucijuga s.s. (type form) replace: Cardamine paucijuga reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cardamine spp. + replace: Cardamine sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cardamine tenuifolia (large-flower form) replace: Cardamine tenuifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cardamine tenuifolia (small-flower form) replace: Cardamine tenuifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex aff. tereticaulis (Lake Omeo) replace: Carex sp. [Carex aff. tereticaulis (Lake Omeo); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4453,12 +2154,20 @@ taxonomic_updates: replace: Carex inversa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Carex sp replace: Carex sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Carex spp. + replace: Carex sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Carpha spp. + replace: Carpha sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Carpobrotus aff. rossii (N.W. Victoria) replace: Carpobrotus sp. [Carpobrotus aff. rossii (N.W. Victoria); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4469,95 +2178,179 @@ taxonomic_updates: reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Carpobrotus spp. + replace: Carpobrotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Caryophyllaceae spp. + replace: Caryophyllaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Cassia spp. + replace: Cassia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cassinia adunca replace: Cassinia x adunca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassinia sp. aff. uncata replace: Cassinia sp. [Cassinia sp. aff. uncata; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Cassinia spp. + replace: Cassinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cassytha peninsularis var. replace: Cassytha peninsularis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassytha pubescens s.s. replace: Cassytha pubescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cassytha spp. + replace: Cassytha sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Casuarina spp. + replace: Casuarina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Caustis flexuosa s.s. replace: Caustis flexuosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Caustis spp. + replace: Caustis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Celastrus spp. + replace: Celastrus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Celmisia 'pulchella' + replace: Celmisia pulchella + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: species - find: Celmisia asteliifolia spp. agg. replace: Celmisia asteliifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Celmisia longifolia subsp. paludosa m.s. replace: Celmisia longifolia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Celmisia 'pulchella' - replace: Celmisia pulchella - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Celmisia species A replace: Celmisia sp. [Celmisia species A] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Celmisia spp. + replace: Celmisia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Centella spp. + replace: Centella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Centipeda spp. + replace: Centipeda sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Centrolepis spp. + replace: Centrolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cephalomanes spp. + replace: Cephalomanes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ceratogyne spp. + replace: Ceratogyne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ceratophyllum spp. + replace: Ceratophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chaerophyllum argentum replace: Chaerophyllum argenteum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chaerophyllum spp. replace: Oreomyrrhis sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Chamaescilla spp. + replace: Chamaescilla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chamaesyce spp. replace: Euphorbia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Cheilanthes spp. + replace: Cheilanthes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cheilanthes tenuifolia subsp. sieberi replace: Cheilanthes tenuifolia var. sieberi reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Cheilanthes tenuifolia subsp. tenuifolia replace: Cheilanthes tenuifolia var. tenuifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Cheiranthera spp. + replace: Cheiranthera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Chenopodiaceae spp. + replace: Chenopodiaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Chenopodium glaucum subsp. ambiguum replace: Chenopodium glaucum var. ambiguum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Chiloglottis aff. valida (Alpine) replace: Chiloglottis sp. aff. valida reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloglottis aff. valida (Lowland) replace: Chiloglottis sp. aff. valida reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chiloglottis pescottiana replace: Chiloglottis x pescottiana reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Chiloglottis spp. + replace: Chiloglottis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Chionochloa spp. + replace: Chionochloa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chionohebe spp. replace: Veronica sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -4568,45 +2361,113 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Choretrum spp. + replace: Choretrum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chorizandra cymbaria s.l. replace: Chorizandra cymbaria reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chorizandra cymbaria s.s. replace: Chorizandra cymbaria reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Chorizandra spp. + replace: Chorizandra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Christella spp. + replace: Christella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Chrysocephalum semiamplexicaule replace: Chrysocephalum apiculatum subsp. semiamplexicaule reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Chrysocephalum spp. + replace: Chrysocephalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Chthonocephalus spp. + replace: Chthonocephalus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cissus spp. + replace: Cissus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cladium spp. + replace: Cladium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Claoxylon spp. + replace: Claoxylon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Clematis microphylla s.l. replace: Clematis microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clematis microphylla s.s. replace: Clematis microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clematis microphylla var. microphylla spp. agg. replace: Clematis microphylla f. microphylla reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma +- find: Clematis spp. + replace: Clematis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Codonocarpus spp. + replace: Codonocarpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Coleospermum reticulatum replace: Coelospermum reticulatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Colobanthus spp. + replace: Colobanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Comesperma spp. + replace: Comesperma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Commelina spp. + replace: Commelina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Commersonia spp. + replace: Commersonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Compositae spp. + replace: Asteraceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Conospermum spp. + replace: Conospermum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Convolvulaceae spp. + replace: Convolvulaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Convolvulus erubescens spp. agg. replace: Convolvulus erubescens reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus erubescens/remotus replace: Convolvulus sp. [Convolvulus erubescens/remotus; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -4622,19 +2483,27 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Coopernookia spp. + replace: Coopernookia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Coprosma X tadgellii + replace: Coprosma xtadgelii + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species - find: Coprosma miphophila replace: Coprosma microphylla reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coprosma sp. C replace: Coprosma sp. C (aff. nitida) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Coprosma X tadgellii - replace: Coprosma xtadgelii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Coprosma spp. + replace: Coprosma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Coronidium scorpioides 'aff. rutidolepis (Alps)' varian replace: Coronidium sp. [Coronidium scorpioides 'aff. rutidolepis (Alps)' varian; White_2020] @@ -4651,17 +2520,21 @@ taxonomic_updates: replace: Coronidium scorpioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Coronidium scorpioides 'rutidolepis s.s.' variant replace: Coronidium scorpioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Coronidium spp. + replace: Coronidium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Correa aemula s.str. replace: Correa aemula reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa aff. aemula replace: Correa sp. [Correa aff. aemula; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4681,21 +2554,30 @@ taxonomic_updates: replace: Correa lawrenceana var. latrobeana reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Correa reflexa 'Anglesea' + replace: Correa reflexa + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-23) + taxonomic_resolution: species - find: Correa reflexa (Anglesea) replace: Correa reflexa 'Anglesea' reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa reflexa (Barwon River) replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Correa reflexa (Western Otways) replace: Correa reflexa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Correa spp. + replace: Correa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Corunastylis spp. replace: Corunastylis sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -4711,6 +2593,18 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Corybas spp. + replace: Corybas sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Corymbia spp. + replace: Corymbia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Corynotheca spp. + replace: Corynotheca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Craspedia aff. costiniana (Emu Plains) replace: Craspedia sp. [Craspedia aff. costiniana (Emu Plains); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4720,12 +2614,16 @@ taxonomic_updates: replace: Craspedia glauca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia sp. Q replace: Craspedia sp. Q (aff. globosa) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Craspedia spp. + replace: Craspedia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Crassula colorata/sieberiana complex replace: Crassula sp. [Crassula colorata/sieberiana complex; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -4735,94 +2633,254 @@ taxonomic_updates: replace: Crassula sieberiana var. sieberiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Cratystylis spp. + replace: Cratystylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Crepidomanes spp. + replace: Crepidomanes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cressa spp. + replace: Cressa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Crinum spp. + replace: Crinum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Crowea spp. + replace: Crowea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cruciferae spp. + replace: Brassicaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Cryptandra amara s.l. replace: Cryptandra amara reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra amara s.s. replace: Cryptandra amara reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra sp. Floriferous replace: Cryptandra sp. Floriferous (W.R.Barker 4131) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra sp. Floriferous (W.R.Barker 4131) W.R.Barker replace: Cryptandra sp. Floriferous (W.R.Barker 4131) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra sp. Long hypanthium (C.R. Alcock 10626) replace: Cryptandra sp. Long hypanthium (C.R.Alcock 10626) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cryptandra spp. + replace: Cryptandra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cryptostylis spp. + replace: Cryptostylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ctenopteris heterophylla x Grammitis billardierei replace: Ctenopteris x [Ctenopteris heterophylla x Grammitis billardierei; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-22) taxonomic_resolution: genus +- find: Ctenopteris spp. + replace: Ctenopteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cucumis spp. + replace: Cucumis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Cullen microcephalum (dwarf form) replace: Cullen microcephalum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Cullen spp. + replace: Cullen sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cuphonotus spp. + replace: Cuphonotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyanicula spp. + replace: Cyanicula sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyanthillium spp. + replace: Cyanthillium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyathea spp. + replace: Cyathea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyathochaeta spp. + replace: Cyathochaeta sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyclosorus spp. + replace: Cyclosorus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cymbidium spp. + replace: Cymbidium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cymbonotus spp. + replace: Cymbonotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cymbopogon spp. + replace: Cymbopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyperaceae spp. + replace: Cyperaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Cyperus ?*polystachyos replace: Cyperus polystachyos reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus bowmannii replace: Cyperus bowmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus gymnocaulos x vaginatus replace: Cyperus x [Cyperus gymnocaulos x vaginatus; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Cystopteris filix-fragilis - replace: Cystopteris filixfragilis - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-10) - taxonomic_resolution: Species +- find: Cyperus spp. + replace: Cyperus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyphanthera spp. + replace: Cyphanthera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cyrtostylis spp. + replace: Cyrtostylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Cystopteris filix-fragilis + replace: Cystopteris filixfragilis + reason: match_20. Rewording name to be recognised as genus rank, with genus accepted + by APC (2022-11-10) + taxonomic_resolution: species +- find: Cystopteris spp. + replace: Cystopteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dactyloctenium spp. + replace: Dactyloctenium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Damasonium spp. + replace: Damasonium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dampiera lanceolata var. replace: Dampiera lanceolata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dampiera spp. + replace: Dampiera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Darwinia spp. + replace: Darwinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Davallia spp. + replace: Davallia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Daviesia mimosoides s.l. replace: Daviesia mimosoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Daviesia mimosoides s.s. replace: Daviesia mimosoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Daviesia spp. + replace: Daviesia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Deeringia spp. + replace: Deeringia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dendrobium sp replace: Dendrobium sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Dendrobium spp. + replace: Dendrobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dendrocnide spp. + replace: Dendrocnide sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dendrophthoe spp. + replace: Dendrophthoe sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dennstaedtia spp. + replace: Dennstaedtia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Deparia spp. + replace: Deparia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Derwentia spp. replace: Veronica sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Deschampsia spp. + replace: Deschampsia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Desmodium spp. + replace: Desmodium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Deyeuxia innomata replace: Deyeuxia innominata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Deyeuxia quadriseta (slender flaccid variant) replace: Deyeuxia quadriseta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Deyeuxia spp. + replace: Deyeuxia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dianella aff. caerulea (Lake Tyers) replace: Dianella sp. [Dianella aff. caerulea (Lake Tyers); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4842,7 +2900,7 @@ taxonomic_updates: replace: Dianella brevicaulis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella brevicaulis/revoluta var. replace: Dianella sp. [Dianella brevicaulis/revoluta var.; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -4852,17 +2910,17 @@ taxonomic_updates: replace: Dianella caerulea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella longifolia s.l. replace: Dianella longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella revoluta s.l. replace: Dianella revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella sp. aff. admixta (Lawloit Range) replace: Dianella sp. [Dianella sp. aff. admixta (Lawloit Range); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4891,7 +2949,7 @@ taxonomic_updates: - find: Dianella sp. aff. longifolia (Riverina) replace: Dianella sp. aff longifolia (Riverina) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella sp. aff. revoluta replace: Dianella sp. [Dianella sp. aff. revoluta; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4937,30 +2995,98 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Dianella spp. + replace: Dianella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dichanthium spp. + replace: Dichanthium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dichelachne sciurea spp. agg. replace: Dichelachne sciurea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dichelachne spp. + replace: Dichelachne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dichondra spp. + replace: Dichondra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dichopogon spp. + replace: Dichopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dicksonia spp. + replace: Dicksonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dicrastylis spp. + replace: Dicrastylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dillwynia cinerascens s.l. replace: Dillwynia cinerascens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia cinerascens s.s. replace: Dillwynia cinerascens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dillwynia sericea subsp. 2 (North-west) replace: Dillwynia sericea subsp. 2 (North West) reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Dillwynia spp. + replace: Dillwynia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Diplachne spp. + replace: Diplachne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Diplarrena spp. + replace: Diplarrena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Diplaspis spp. + replace: Diplaspis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Diplazium spp. + replace: Diplazium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dipodium spp. + replace: Dipodium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Discaria spp. + replace: Discaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Disphyma spp. + replace: Disphyma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Dissocarpus biflorus var. replace: Dissocarpus biflorus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dissocarpus spp. + replace: Dissocarpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Distichlis spp. + replace: Distichlis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Diuris aff. pardina (Western Goldfields) replace: Diuris sp. [Diuris aff. pardina (Western Goldfields); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -4970,31 +3096,95 @@ taxonomic_updates: replace: Diuris punctata reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Diuris spp. + replace: Diuris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dockrillia spp. + replace: Dockrillia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dodonaea spp. + replace: Dodonaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Doodia media subsp. media replace: Doodia media var. media reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Doodia spp. replace: Doodia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Doryphora spp. + replace: Doryphora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Drabastrum spp. + replace: Drabastrum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Drosera peltata subsp. peltata spp. agg. replace: Drosera peltata subsp. peltata reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Drosera spp. + replace: Drosera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Drymophila spp. + replace: Drymophila sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Dryopoa spp. + replace: Dryopoa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Duboisia spp. + replace: Duboisia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Duperrya commixta replace: Duperreya commixta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dysphania spp. + replace: Dysphania sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Echinopogon spp. + replace: Echinopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eclipta spp. + replace: Eclipta sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Einadia nutans (matted form) replace: Einadia nutans reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Einadia spp. + replace: Einadia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Elachanthus spp. + replace: Elachanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Elaeocarpus spp. + replace: Elaeocarpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Elatine spp. + replace: Elatine sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eleocharis aff. acuta (basalt) replace: Eleocharis sp. [Eleocharis aff. acuta (basalt); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5005,80 +3195,120 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Eleocharis spp. + replace: Eleocharis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Elymus scaber (glabrous form) replace: Elymus scaber reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elymus scaber (hairy form) replace: Elymus scaber reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elymus scaber subsp. rectisetus replace: Elymus scaber reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Elymus spp. + replace: Elymus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Elytrophorus spp. + replace: Elytrophorus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Empodisma spp. + replace: Empodisma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Enchylaena spp. + replace: Enchylaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Enchylaena tomentosa subsp. (coastal glabrous form) replace: Enchylaena tomentosa var. glabra reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa subsp. (hairy or type form) replace: Enchylaena tomentosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enchylaena tomentosa var. replace: Enchylaena tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Enchylaena tomentosa var. glabra (coastal glabrous form) replace: Enchylaena tomentosa f. c (coastal glabrous form) reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Enchylaena tomentosa var. glabra (hairy or type form) replace: Enchylaena tomentosa var. glabra reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa var. tomentosa (hairy or type form) replace: Enchylaena tomentosa var. tomentosa reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa var. tomentosa (prostrate form) replace: Enchylaena tomentosa var. tomentosa reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Enchylaena tomentosa var. tomentosa (shrubby form) replace: Enchylaena tomentosa var. tomentosa reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Enneapogon spp. + replace: Enneapogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Enteropogon spp. + replace: Enteropogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Entolasia spp. + replace: Entolasia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Entolasia stricta var. hirsuta replace: Entolasia stricta reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris microphylla s.l. replace: Epacris microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris microphylla s.s. replace: Epacris microphylla reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Epacris spp. + replace: Epacris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Epilobium billardierianum subsp. hydrophilum replace: Epilobium billardiereanum subsp. hydrophilum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Epilobium spp. + replace: Epilobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eragrostis sp. 'Pilliga Scrub' replace: Eragrostis sp. [Eragrostis sp. 'Pilliga Scrub'] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth @@ -5088,22 +3318,54 @@ taxonomic_updates: replace: Eremophila latrobei reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eremophila spp. + replace: Eremophila sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eremophila subfloccosa subsp. replace: Eremophila subfloccosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erigeron pappocromus spp. agg. replace: Erigeron pappocromus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Eriocaulon spp. + replace: Eriocaulon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eriochilus spp. + replace: Eriochilus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eriochiton spp. + replace: Eriochiton sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eriochlamys spp. + replace: Eriochlamys sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eriochloa spp. + replace: Eriochloa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eriostemon difformis subsp. difformis replace: Eriostemon difformis var. difformis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Eriostemon spp. + replace: Eriostemon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Erodiophyllum spp. + replace: Erodiophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Erodium crinitum/cygnorum/carolinianum/jannzii replace: Erodium sp. [Erodium crinitum/cygnorum/carolinianum/jannzii; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5113,12 +3375,27 @@ taxonomic_updates: replace: Erodium cygnorum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eryngium rostratum/vesiculosum replace: Eryngium sp. [Eryngium rostratum/vesiculosum; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus X calycogona x gracilis + replace: Eucalyptus x [Eucalyptus X calycogona x gracilis; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-22) + taxonomic_resolution: genus +- find: Eucalyptus X dumosa x socialis + replace: Eucalyptus x [Eucalyptus X dumosa x socialis; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-22) + taxonomic_resolution: genus +- find: Eucalyptus X williamsonii + replace: Eucalyptus x [Eucalyptus X williamsonii; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-22) + taxonomic_resolution: genus - find: Eucalyptus aff. aromaphloia (Brisbane Ranges) replace: Eucalyptus sp. [Eucalyptus aff. aromaphloia (Brisbane Ranges); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5169,13 +3446,13 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus albens x Eucalyptus moluccana - replace: Eucalyptus x [Eucalyptus albens x Eucalyptus moluccana; White_2020] +- find: Eucalyptus albens X crebra + replace: Eucalyptus x [Eucalyptus albens X crebra; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus albens X crebra - replace: Eucalyptus x [Eucalyptus albens X crebra; White_2020] +- find: Eucalyptus albens x Eucalyptus moluccana + replace: Eucalyptus x [Eucalyptus albens x Eucalyptus moluccana; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus @@ -5193,7 +3470,7 @@ taxonomic_updates: replace: Eucalyptus alpina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus arenacea/baxteri replace: Eucalyptus sp. [Eucalyptus arenacea/baxteri; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5204,11 +3481,16 @@ taxonomic_updates: reason: match_03. Rewording taxon that are intergrades between two taxa and genus aligns with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus blakelyi X chloroclada + replace: Eucalyptus x [Eucalyptus blakelyi X chloroclada; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Eucalyptus blakelyi subsp. blakelyi replace: Eucalyptus blakelyi var. blakelyi reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus blakelyi x Eucalyptus chloroclada replace: Eucalyptus x [Eucalyptus blakelyi x Eucalyptus chloroclada; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5219,11 +3501,6 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus blakelyi X chloroclada - replace: Eucalyptus x [Eucalyptus blakelyi X chloroclada; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) - taxonomic_resolution: genus - find: Eucalyptus botryoides -- saligna replace: Eucalyptus sp. [Eucalyptus botryoides -- saligna; White_2020] reason: match_03. Rewording taxon that are intergrades between two taxa and genus @@ -5238,7 +3515,7 @@ taxonomic_updates: replace: Eucalyptus calycogona reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus camaldulensis -- chloroclada replace: Eucalyptus sp. [Eucalyptus camaldulensis -- chloroclada; White_2020] reason: match_03. Rewording taxon that are intergrades between two taxa and genus @@ -5248,7 +3525,7 @@ taxonomic_updates: replace: Eucalyptus camaldulensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus camaldulensis x Eucalyptus chloroclada replace: Eucalyptus x [Eucalyptus camaldulensis x Eucalyptus chloroclada; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5273,36 +3550,31 @@ taxonomic_updates: replace: Eucalyptus croajingolensis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leucoxylon hybrid replace: Eucalyptus x [Eucalyptus leucoxylon hybrid] reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus macmahonii replace: Eucalyptus x macmahonii reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus mannifera subsp. elliptica replace: Eucalyptus mannifera var. elliptica reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eucalyptus melliodora var. rosea replace: Eucalyptus melliodora reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus microcarpa -- Eucalyptus odorata replace: Eucalyptus sp. [Eucalyptus microcarpa -- Eucalyptus odorata; White_2020] reason: match_03. Rewording taxon that are intergrades between two taxa and genus aligns with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus microcarpa x crebra - replace: Eucalyptus x [Eucalyptus microcarpa x crebra; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) - taxonomic_resolution: genus - find: Eucalyptus microcarpa x Eucalyptus cebra replace: Eucalyptus x [Eucalyptus microcarpa x Eucalyptus cebra; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5313,6 +3585,11 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus microcarpa x crebra + replace: Eucalyptus x [Eucalyptus microcarpa x crebra; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Eucalyptus pauciflora x Eucalyptus radiata replace: Eucalyptus x [Eucalyptus pauciflora x Eucalyptus radiata; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5321,29 +3598,29 @@ taxonomic_updates: - find: Eucalyptus pauciflora x radiata replace: Eucalyptus x [Eucalyptus pauciflora x Eucalyptus radiata] reason: Manual alignment to genus indicating hybrid taxon (Elizaneth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Eucalyptus polyanthemos subsp. tarda replace: Eucalyptus polyanthemos reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus racemosa x Eucalyptus haemastoma - replace: Eucalyptus x [Eucalyptus racemosa x Eucalyptus haemastoma; White_2020] + taxonomic_resolution: species +- find: Eucalyptus racemosa X haemastoma + replace: Eucalyptus x [Eucalyptus racemosa X haemastoma; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus racemosa x Eucalyptus piperita - replace: Eucalyptus x [Eucalyptus racemosa x Eucalyptus piperita; White_2020] +- find: Eucalyptus racemosa X piperita + replace: Eucalyptus x [Eucalyptus racemosa X piperita; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus racemosa X haemastoma - replace: Eucalyptus x [Eucalyptus racemosa X haemastoma; White_2020] +- find: Eucalyptus racemosa x Eucalyptus haemastoma + replace: Eucalyptus x [Eucalyptus racemosa x Eucalyptus haemastoma; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Eucalyptus racemosa X piperita - replace: Eucalyptus x [Eucalyptus racemosa X piperita; White_2020] +- find: Eucalyptus racemosa x Eucalyptus piperita + replace: Eucalyptus x [Eucalyptus racemosa x Eucalyptus piperita; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus @@ -5355,7 +3632,7 @@ taxonomic_updates: - find: Eucalyptus sp. aff. blakelyi (Strathbogie & Warby Ras) replace: Eucalyptus sp. aff. blakelyi (Strathbogie & Warby Ranges) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus sp. aff. camphora (Bunyip) replace: Eucalyptus sp. [Eucalyptus sp. aff. camphora (Bunyip); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5386,6 +3663,10 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Eucalyptus spp. + replace: Eucalyptus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eucalyptus tereticornis X robusta replace: Eucalyptus x [Eucalyptus tereticornis X robusta; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5395,45 +3676,42 @@ taxonomic_updates: replace: Eucalyptus viminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus viminalis subsp. maculosa replace: Eucalyptus viminalis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Eucalyptus X calycogona x gracilis - replace: Eucalyptus x [Eucalyptus X calycogona x gracilis; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-22) - taxonomic_resolution: genus -- find: Eucalyptus X dumosa x socialis - replace: Eucalyptus x [Eucalyptus X dumosa x socialis; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-22) - taxonomic_resolution: genus -- find: Eucalyptus X williamsonii - replace: Eucalyptus x [Eucalyptus X williamsonii; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-22) - taxonomic_resolution: genus + taxonomic_resolution: species - find: Euchiton indutum replace: Gnaphalium indutum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton sp. nov. (Alps) replace: Euchiton sp. (Alps) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton sphaericus (broad-leaf dwarf variant) replace: Euchiton sphaericus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euchiton sphaericus (narrow-leaf floodplain variant) replace: Euchiton sphaericus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Euchiton spp. + replace: Euchiton sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eucryphia spp. + replace: Eucryphia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eulalia spp. + replace: Eulalia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Euphorbia sp replace: Euphorbia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -5444,56 +3722,152 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Euphrasia spp. + replace: Euphrasia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eupomatia spp. + replace: Eupomatia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eurychorda spp. + replace: Eurychorda sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Euryomyrtus spp. + replace: Euryomyrtus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Eustrephus spp. + replace: Eustrephus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Eutaxia microphylla var. microphylla (erect) replace: Eutaxia microphylla var. microphylla reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Eutaxia microphylla var. microphylla (prostrate) replace: Eutaxia microphylla var. microphylla reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Eutaxia spp. + replace: Eutaxia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Evolvulus spp. + replace: Evolvulus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ewartia spp. + replace: Ewartia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Exocarpos spp. + replace: Exocarpos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ficinia spp. + replace: Ficinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Fieldia spp. + replace: Fieldia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Fimbristylis spp. + replace: Fimbristylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Flaveria spp. + replace: Flaveria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Flindersia spp. + replace: Flindersia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Frankenia pauciflora var. replace: Frankenia pauciflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Frankenia spp. + replace: Frankenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gahnia spp. + replace: Gahnia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Galium australe s.l. replace: Galium australe reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galium australe s.s. replace: Galium australe reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Galium ciliare subsp. ciliare replace: Galium ciliare subsp. ciliare reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Galium migrans spp. agg. replace: Galium migrans reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrodia sesamoides s.l. replace: Gastrodia sesamoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastrodia sesamoides s.s. replace: Gastrodia sesamoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gastrodia spp. + replace: Gastrodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gaultheria spp. + replace: Gaultheria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Geijera spp. + replace: Geijera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Geitonoplesium spp. + replace: Geitonoplesium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Genoplesium nigricans/rufum replace: Genoplesium sp. [Genoplesium nigricans/rufum; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Genoplesium spp. + replace: Genoplesium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gentianella spp. + replace: Gentianella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Geococcus spp. + replace: Geococcus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Geraniaceae spp. + replace: Geraniaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Geranium aff. sp. 3 replace: Geranium sp. [Geranium aff. sp. 3; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5503,12 +3877,12 @@ taxonomic_updates: replace: Geranium retrorsum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium retrorsum subsp. retrorsum replace: Geranium retrorsum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium sp. 13 replace: Geranium sp. [Geranium sp. 13; White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -5524,21 +3898,61 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Geum spp. + replace: Geum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gingidia spp. + replace: Gingidia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gleichenia spp. + replace: Gleichenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glinus spp. + replace: Glinus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glischrocaryon spp. + replace: Glischrocaryon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glossocardia spp. + replace: Glossocardia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glossodia spp. + replace: Glossodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Glossostigma spp. + replace: Glossostigma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Glycine pacifica replace: Glycine pacifica (Grace 946) reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Glycine spp. + replace: Glycine sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Glycine tabacina 'l' form f. 'l' replace: Glycine tabacina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine tabacina subsp. 'B' replace: Glycine tabacina subsp. B reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Glycyrrhiza spp. + replace: Glycyrrhiza sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Gnaphalium aff. sphaericum replace: Gnaphalium sp. [Gnaphalium aff. sphaericum; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5547,22 +3961,42 @@ taxonomic_updates: - find: Gnaphalium luteo-album replace: Gnaphalium luteoalbum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Gnaphalium spp. + replace: Gnaphalium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gnephosis spp. + replace: Gnephosis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gompholobium spp. + replace: Gompholobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gomphrena spp. + replace: Gomphrena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Gonocarpus elatus X Gonocarpus mezianus replace: Gonocarpus x [Gonocarpus elatus X Gonocarpus mezianus; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Gonocarpus spp. + replace: Gonocarpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Gonocarpus teucrioides s.l. replace: Gonocarpus teucrioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus teucrioides s.s. replace: Gonocarpus teucrioides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Goodenia aff. geniculata replace: Goodenia sp. [Goodenia aff. geniculata; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5573,11 +4007,39 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Goodenia spp. + replace: Goodenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Goodeniaceae spp. + replace: Goodeniaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Goodia lotifolia var. replace: Goodia lotifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Goodia spp. + replace: Goodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gramineae sp. + replace: Poaceae sp. [Gramineae sp.; White_2020] + reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: family +- find: Grammitis spp. + replace: Grammitis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Grammosolen spp. + replace: Grammosolen sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gratiola spp. + replace: Gratiola sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Grevillea aff. oxyantha (Mt Burrowa) replace: Grevillea sp. [Grevillea aff. oxyantha (Mt Burrowa); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5586,66 +4048,98 @@ taxonomic_updates: - find: Grevillea chrysophaea (Brisbane Ranges form) replace: Grevillea chrysophaea Brisbane Ranges form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea chrysophaea (Gippsland form) replace: Grevillea chrysophaea Gippsland form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea chrysophaea (Holey Plains form) replace: Grevillea chrysophaea Holey Plains form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea lavandulacea var. replace: Grevillea lavandulacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea linearifolia 'Angourie form' replace: Grevillea linearifolia f. Angourie form reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Forma -- find: Grevillea linearifolia f. 'Kanangra/Braidwood form' - replace: Grevillea linearifolia f. Kanangra/Braidwood form - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: forma - find: Grevillea linearifolia 'Hawkesbury Sandstone form' replace: Grevillea linearifolia f. Hawkesbury Sandstone form reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Grevillea linearifolia 'Kanangra/Braidwood form' replace: Grevillea linearifolia f. Kanangra/Braidwood form reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Grevillea linearifolia 'Southern Submontane form' + replace: Grevillea linearifolia f. 'Southern Submontane form' + reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) + taxonomic_resolution: forma +- find: Grevillea linearifolia 'Western Slopes form' + replace: Grevillea linearifolia f. Western Slopes form + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-10) + taxonomic_resolution: forma - find: Grevillea linearifolia 'narrower-leaved Sydney form' replace: Grevillea linearifolia f. Narrower-leaved Sydney form reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Grevillea linearifolia 'northern form' replace: Grevillea linearifolia Northern form reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Grevillea linearifolia 'southern sandstone form' replace: Grevillea linearifolia f. Southern Sandstone form reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Forma -- find: Grevillea linearifolia 'Southern Submontane form' - replace: Grevillea linearifolia f. 'Southern Submontane form' - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Forma -- find: Grevillea linearifolia 'Western Slopes form' - replace: Grevillea linearifolia f. Western Slopes form - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma +- find: Grevillea linearifolia f. 'Kanangra/Braidwood form' + replace: Grevillea linearifolia f. Kanangra/Braidwood form + reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) + taxonomic_resolution: species - find: Grevillea linearifolia x parviflora replace: Grevillea x [Grevillea linearifolia x parviflora; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Grevillea spp. + replace: Grevillea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gunniopsis spp. + replace: Gunniopsis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gymnoschoenus spp. + replace: Gymnoschoenus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gynatrix spp. + replace: Gynatrix sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gypsophila spp. + replace: Gypsophila sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Gyrostemon spp. + replace: Gyrostemon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Haeckeria spp. + replace: Haeckeria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Haegiela spp. + replace: Haegiela sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hakea aff. eriantha (Genoa River) replace: Hakea sp. [Hakea aff. eriantha (Genoa River); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5655,21 +4149,37 @@ taxonomic_updates: replace: Hakea dactyloides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea dactyloides narrow-leaved form replace: Hakea dactyloides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hakea leucoptera/tephrosperma replace: Hakea sp. [Hakea leucoptera/tephrosperma; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Hakea spp. + replace: Hakea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Halgania cyanea var. tuberculosa replace: Halgania cyanea var. tuberculosa MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Halgania spp. + replace: Halgania sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Halophila spp. + replace: Halophila sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Haloragaceae spp. + replace: Haloragaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Haloragis acutangula/odontocarpa replace: Haloragis sp. [Haloragis acutangula/odontocarpa; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5684,32 +4194,52 @@ taxonomic_updates: replace: Haloragis exalata subsp. exalata reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Haloragis exalata subsp. exalata var. laevis replace: Haloragis exalata subsp. exalata reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Haloragis spp. + replace: Haloragis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Haloragodendron spp. + replace: Haloragodendron sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Halosarcia spp. replace: Tecticornia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Hardenbergia spp. + replace: Hardenbergia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hardenbergia violacea (shrubby form) replace: Hardenbergia violacea reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Harmsiodoxa brevipes var. replace: Harmsiodoxa brevipes reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Harmsiodoxa spp. + replace: Harmsiodoxa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hedycarya spp. + replace: Hedycarya sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Helichrysum apiculatum f. 'A' replace: Helichrysum apiculatum f. apiculatum reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Helichrysum apiculatum/semipapposum replace: Helichrysum sp. [Helichrysum apiculatum/semipapposum; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5719,17 +4249,37 @@ taxonomic_updates: replace: Helichrysum bilobum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helichrysum obcordatum subsp. obcordatum replace: Helichrysum obcordatum var. obcordatum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Helipterum spp. + replace: Helipterum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hemarthria spp. + replace: Hemarthria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hemichroa spp. + replace: Hemichroa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Herpolirion spp. + replace: Herpolirion sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Heterodendrum oleifolium subsp. oleifolium replace: Heterodendrum oleifolium var. oleifolium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Heterozostera spp. + replace: Heterozostera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hibbertia aff. riparia (Grampians) replace: Hibbertia sp. [Hibbertia aff. riparia (Grampians); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5744,7 +4294,7 @@ taxonomic_updates: replace: Hibbertia aspera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia cistiflora subsp. rostrata x sericea replace: Hibbertia x [Hibbertia cistiflora subsp. rostrata x sericea; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5754,7 +4304,7 @@ taxonomic_updates: replace: Hibbertia riparia reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sericea vars. densiflora/sericea replace: Hibbertia sp. [Hibbertia sericea vars. densiflora/sericea; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5764,7 +4314,7 @@ taxonomic_updates: replace: Hibbertia sp. B reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp. aff. riparia (densely woolly) replace: Hibbertia sp. [Hibbertia sp. aff. riparia (densely woolly); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5775,25 +4325,73 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Hibbertia spp. + replace: Hibbertia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hibbertia stricta s.l. replace: Hibbertia stricta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hibiscus spp. + replace: Hibiscus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hierochloe spp. + replace: Hierochloe sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Histiopteris spp. + replace: Histiopteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hookerochloa spp. + replace: Hookerochloa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hornungia sp replace: Hornungia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Hornungia spp. + replace: Hornungia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hovea sp. P replace: Hovea sp. "P" reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hovea spp. + replace: Hovea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Howittia spp. + replace: Howittia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Huperzia spp. + replace: Huperzia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hyalosperma glutinosum/semisterile replace: Hyalosperma sp. [Hyalosperma glutinosum/semisterile; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Hyalosperma spp. + replace: Hyalosperma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hybanthus spp. + replace: Hybanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hydrilla spp. + replace: Hydrilla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hydrocotyle aff. algida replace: Hydrocotyle sp. [Hydrocotyle aff. algida; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5819,11 +4417,23 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Hymenophyllum spp. + replace: Hymenophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hypericum gramineum spp. agg. replace: Hypericum gramineum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hypolaena spp. + replace: Hypolaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Hypolepis spp. + replace: Hypolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hypoxis glabella/vaginata spp. agg. replace: Hypoxis sp. [Hypoxis glabella/vaginata sp. agg.; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -5833,26 +4443,90 @@ taxonomic_updates: replace: Hypoxis hygrometrica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypoxis hygrometrica var. hypoglaucum replace: Hypoxis hygrometrica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Hypoxis spp. + replace: Hypoxis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Hypsela spp. replace: Isotoma sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Imperata spp. + replace: Imperata sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Indigofera spp. + replace: Indigofera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Indigophora adesmiifolia replace: Indigofera adesmiifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Irenepharsus spp. + replace: Irenepharsus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Iridaceae spp. + replace: Iridaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Isachne spp. + replace: Isachne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Isoetes spp. + replace: Isoetes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Isoetopsis spp. + replace: Isoetopsis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Isolepis spp. + replace: Isolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Isopogon spp. + replace: Isopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Isotoma sp replace: Isotoma sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Isotoma spp. + replace: Isotoma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ixiochlamys spp. + replace: Ixiochlamys sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ixiolaena spp. + replace: Ixiolaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ixodia spp. + replace: Ixodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Jacksonia spp. + replace: Jacksonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Jasminum spp. + replace: Jasminum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Joycea spp. replace: Rytidosperma sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -5867,17 +4541,17 @@ taxonomic_updates: replace: Juncus holoschoenus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus melanobasis replace: Juncus alexandri subsp. melanobasis reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Juncus phaeanthus M.S. replace: Juncus phaeanthus reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Juncus sp. (subgenus Genuini) replace: Juncus sp. [Juncus sp. (subgenus Genuini); White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -5893,30 +4567,54 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Juncus sp. M + replace: Juncus sp. M (aff. sandwithii) + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-10) + taxonomic_resolution: species - find: Juncus sp. aff. pallidus replace: Juncus sp. [Juncus sp. aff. pallidus; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Juncus sp. M - replace: Juncus sp. M (aff. sandwithii) - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-10) - taxonomic_resolution: Species +- find: Juncus spp. + replace: Juncus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Juncus subsecundus subsp. congregatus replace: Juncus subsecundus subsp. congregatus MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Juncus subsecundus x usitatus replace: Juncus x [Juncus subsecundus x usitatus; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Kelleria spp. + replace: Kelleria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Kennedia spp. + replace: Kennedia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Kippistia spp. + replace: Kippistia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Koeleria spp. + replace: Koeleria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Korthalsella spp. + replace: Korthalsella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Kunzea ericoides spp. agg. replace: Kunzea ericoides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea peduncularis x phylicoides replace: Kunzea x [Kunzea peduncularis x phylicoides; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -5926,12 +4624,16 @@ taxonomic_updates: replace: Kunzea sp. Scrubby form (K.R.Thiele 445) reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kunzea sp. (Upright form) replace: Kunzea sp. Upright form (M.G.Corrick 11564) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Kunzea spp. + replace: Kunzea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lachnagrostis aff. filiformis (Murray River) replace: Lachnagrostis sp. [Lachnagrostis aff. filiformis (Murray River); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -5941,17 +4643,21 @@ taxonomic_updates: replace: Lachnagrostis perennis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lachnagrostis scabra subsp. scabra replace: Lachnagrostis scabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lachnagrostis sp. aff. adamsonii replace: Lachnagrostis sp. [Lachnagrostis sp. aff. adamsonii; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Lachnagrostis spp. + replace: Lachnagrostis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lagenifera spp. replace: Lagenophora sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -5962,35 +4668,79 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Lagenophora spp. + replace: Lagenophora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Landoltia spp. + replace: Landoltia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lasiopetalum spp. + replace: Lasiopetalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lastreopsis spp. + replace: Lastreopsis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lavatera spp. replace: Lavatera sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Lawrencia spp. + replace: Lawrencia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Laxmannia spp. + replace: Laxmannia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leiocarpa semicalva subsp. replace: Leiocarpa semicalva reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leiocarpa spp. + replace: Leiocarpa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leiocarpa tomentosa/websteri replace: Leiocarpa sp. [Leiocarpa tomentosa/websteri; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Leionema spp. + replace: Leionema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lemna minor s.l. replace: Lemna minor reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Lemna spp. + replace: Lemna sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lemooria spp. + replace: Lemooria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lepidium muelleriferdinandi replace: Lepidium muelleri-ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lepidium oxytrichum/papillosum replace: Lepidium sp. [Lepidium oxytrichum/papillosum; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Lepidobolus spp. + replace: Lepidobolus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lepidosperma aff. laterale replace: Lepidosperma sp. [Lepidosperma aff. laterale; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6006,73 +4756,149 @@ taxonomic_updates: reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Lepidosperma spp. + replace: Lepidosperma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lepilaena spp. replace: Althenia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Leporella spp. + replace: Leporella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptecophylla spp. + replace: Leptecophylla sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptinella spp. + replace: Leptinella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptocarpus spp. s.l. + replace: Leptocarpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptoceras spp. + replace: Leptoceras sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptochloa spp. + replace: Leptochloa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leptomeria acida s.l. replace: Leptomeria acida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptomeria acida s.s. replace: Leptomeria acida reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leptomeria spp. + replace: Leptomeria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptorhynchos spp. + replace: Leptorhynchos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leptospermum obovatum <-> myrtifolium intergrade replace: Leptospermum sp. [Leptospermum obovatum -- Leptospermum myrtifolium intergrade] reason: Manual match to genus for intergrade taxon (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Leptospermum spp. + replace: Leptospermum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leptostigma spp. + replace: Leptostigma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lepyrodia spp. + replace: Lepyrodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lespedeza spp. + replace: Lespedeza sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leucochrysum albicans subsp. albicans var. buffaloensis replace: Leucochrysum albicans var. buffaloensis reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Leucochrysum spp. + replace: Leucochrysum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Leucophyta spp. + replace: Leucophyta sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Leucopogon lanceolatus subsp. group A replace: Leucopogon lanceolatus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. group B replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. group C replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. group D replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. group E replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus subsp. group F replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon lanceolatus var. lanceolatus replace: Leucopogon lanceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leucopogon sp. (Coolmunda D.Halford Q1635) replace: Leucopogon sp. Coolmunda (D.Halford Q1635) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Leucopogon spp. + replace: Leucopogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Levenhookia spp. + replace: Levenhookia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lhotzkya spp. replace: Lhotzkya sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APNI` name (2022-11-10) taxonomic_resolution: genus +- find: Libertia spp. + replace: Libertia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lilaeopsis spp. + replace: Lilaeopsis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Liliaceae spp. replace: Liliaceae sp. [White_2020] reason: match_02. Rewording taxon with ending with `sp.` to indicate a family-level @@ -6083,31 +4909,51 @@ taxonomic_updates: reason: match_21. Rewording name to be recognised as family rank, with family accepted by APC (2022-11-10) taxonomic_resolution: family +- find: Limosella spp. + replace: Limosella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lindsaea spp. + replace: Lindsaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lipocarpha spp. + replace: Lipocarpha sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lissanthe spp. + replace: Lissanthe sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Livistona spp. + replace: Livistona sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lobelia gibbosa sensu Albrecht (1999) replace: Lobelia gibbosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia gibbosa sensu Walsh replace: Lobelia gibbosa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lobelia gibbosa sensu Willis (1972) replace: Lobelia gibbosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia pedunculata s.l. replace: Lobelia pedunculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia pedunculata s.s. replace: Lobelia pedunculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lobelia sp replace: Lobelia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6118,46 +4964,66 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Lobelia spp. + replace: Lobelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lobellia dentata replace: Lobelia dentata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania albiflora subsp. A replace: Logania albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania albiflora subsp. IE replace: Logania albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania albiflora subsp. IS replace: Logania albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania albiflora subsp. W replace: Logania albiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Logania spp. + replace: Logania sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lomandra sp. (Grampians) replace: Lomandra sp. [Lomandra sp. (Grampians); White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Lomandra spp. + replace: Lomandra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Lomatia ilicifolia X silaifolia replace: Lomatia x [Lomatia ilicifolia X silaifolia; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Lomatia myricoides x Lomatia silaifolia - replace: Lomatia x [Lomatia myricoides x Lomatia silaifolia; White_2020] +- find: Lomatia myricoides X silaifolia + replace: Lomatia x [Lomatia myricoides X silaifolia; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Lomatia myricoides X silaifolia - replace: Lomatia x [Lomatia myricoides X silaifolia; White_2020] +- find: Lomatia myricoides x Lomatia silaifolia + replace: Lomatia x [Lomatia myricoides x Lomatia silaifolia; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Lomatia spp. + replace: Lomatia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Loranthaceae spp. + replace: Loranthaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Luzula 'B' replace: Luzula sp. [Luzula 'B'; White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -6172,12 +5038,52 @@ taxonomic_updates: replace: Luzula campestris reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Luzula spp. + replace: Luzula sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lycium spp. + replace: Lycium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lycopodiella spp. + replace: Lycopodiella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lycopodium spp. + replace: Lycopodium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lycopus spp. + replace: Lycopus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lyperanthus spp. + replace: Lyperanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lysiana spp. + replace: Lysiana sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Lythrum spp. + replace: Lythrum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Maireana georgei/turbinata replace: Maireana sp. [Maireana georgei/turbinata; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Maireana spp. + replace: Maireana sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Malacocera spp. + replace: Malacocera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Malva aff. preissiana (pink-flowered inland form) replace: Malva sp. [Malva aff. preissiana (pink-flowered inland form); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6187,49 +5093,77 @@ taxonomic_updates: replace: Malva preissiana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malva preissiana s.s. (white-flowered coastal form) replace: Malva preissiana subsp. Coastal (V.Stajsic 5182) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Malva sp replace: Malva sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Malvaceae spp. + replace: Malvaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Marianthus spp. + replace: Marianthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Marsdenia spp. + replace: Marsdenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Marselea drummondii replace: Marsilea drummondii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Marsilea spp. + replace: Marsilea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Mazus spp. + replace: Mazus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Melaleuca spp. + replace: Melaleuca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Melichrus sp. (Inglewood A.R.Bean 1652) replace: Melichrus sp. Inglewood (A.R.Bean 1652) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melichrus sp. (Isla Gorge P.Sharpe+ 601) replace: Melichrus sp. Isla Gorge (P.Sharpe+ 601) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Melichrus spp. + replace: Melichrus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Melichrus urceolatus subsp. group 1 replace: Melichrus urceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melichrus urceolatus subsp. group 2 replace: Melichrus urceolatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus dentatus (broad-leaf variant) replace: Melicytus dentatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus dentatus (narrow-leaf variant) replace: Melicytus dentatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicytus sp replace: Melicytus sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6240,10 +5174,46 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Melicytus spp. + replace: Melicytus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Menkea spp. + replace: Menkea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Micrantheum spp. + replace: Micrantheum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Microcybe multiflora var. bacharoides replace: Microcybe multiflora subsp. baccharoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Microcybe spp. + replace: Microcybe sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Microlaena spp. + replace: Microlaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Microlepidium spp. + replace: Microlepidium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Micromyrtus spp. + replace: Micromyrtus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Microseris spp. + replace: Microseris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Microsorum spp. + replace: Microsorum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Microtidium spp. replace: Microtis sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6254,89 +5224,209 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Microtis spp. + replace: Microtis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Microtis/Prasophyllum spp. replace: Orchidaceae sp. [Microtis/Prasophyllum sp.] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Millotia greevesii subsp. greevesii var. greevesii replace: Millotia greevesii subsp. greevesii reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Millotia spp. + replace: Millotia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Millotia tenuifolia var. replace: Millotia tenuifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Mimulus spp. + replace: Mimulus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Minuria spp. + replace: Minuria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Mirbelia spp. + replace: Mirbelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Mitrasacme spp. (s.s.) replace: Mitrasacme sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Mollugo spp. + replace: Mollugo sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Monotaxis spp. + replace: Monotaxis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Monotoca spp. + replace: Monotoca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Montia sp replace: Montia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Montia spp. + replace: Montia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Morgania glabra spp. agg. replace: Morgania glabra reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Morgania spp. replace: Stemodia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Morinda spp. + replace: Morinda sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Muehlenbeckia diclina subsp. diclina replace: Muehlenbeckia diclina reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Muehlenbeckia rhyticarya subsp. rhyticarya replace: Muehlenbeckia rhyticarya reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Muehlenbeckia spp. + replace: Muehlenbeckia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Muellerina spp. + replace: Muellerina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Myoporaceae sp. + replace: Myoporaceae sp. + reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) + taxonomic_resolution: family - find: Myoporum insulare subsp. A replace: Myoporum insulare reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myoporum insulare subsp. B replace: Myoporum insulare reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Myoporum spp. + replace: Myoporum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Myosurus spp. + replace: Myosurus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Myriocephalus spp. + replace: Myriocephalus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Myriophyllum elatinoides spp. agg. replace: Myriophyllum elatinoides reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myriophyllum propinquum spp. agg. replace: Myriophyllum propinquum reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myriophyllum simulans var. simulans replace: Myriophyllum simulans reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Myriophyllum spp. + replace: Myriophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Myrsine spp. + replace: Myrsine sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Najas spp. + replace: Najas sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Nematolepis spp. + replace: Nematolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Neobassia spp. + replace: Neobassia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Neopaxia spp. replace: Montia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Nertera spp. + replace: Nertera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Nestegis spp. + replace: Nestegis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Neurachne spp. + replace: Neurachne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Nitraria spp. + replace: Nitraria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Notelaea spp. + replace: Notelaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Notelaea venosa var. A replace: Notelaea venosa var. A. reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Nothofagus spp. + replace: Nothofagus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: NotoRytidosperma sp. replace: Rytidosperma sp. [NotoRytidosperma sp.; White_2020] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Notothixos spp. + replace: Notothixos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Nymphoides spp. + replace: Nymphoides sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Olax spp. + replace: Olax sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Olearia magniflora X Olearia muelleri replace: Olearia x [Olearia magniflora X Olearia muelleri; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -6351,15 +5441,15 @@ taxonomic_updates: replace: Olearia pannosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia ramulosa subsp. D replace: Olearia ramulosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp. aff. elliptica replace: Olearia sp. [Olearia sp. aff. elliptica; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6370,33 +5460,93 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Olearia spp. + replace: Olearia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Olearia tomentosa subsp. A replace: Olearia tomentosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Omphacomeria spp. + replace: Omphacomeria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Omphalolappula spp. + replace: Omphalolappula sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Opercularia spp. + replace: Opercularia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ophioglossum spp. + replace: Ophioglossum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Oplismenus hirtellus subsp. imbecillus replace: Oplismenus hirtellus subsp. imbecillis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Oplismenus spp. + replace: Oplismenus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Orchidaceae spp. + replace: Orchidaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Oreobolus spp. + replace: Oreobolus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Orites spp. + replace: Orites sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Orobanche spp. + replace: Orobanche sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Orthoceras spp. + replace: Orthoceras sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Orthrosanthus spp. + replace: Orthrosanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Oschatzia spp. + replace: Oschatzia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Osteocarpum acropterum var. replace: Osteocarpum acropterum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osteocarpum acropterum var. deminuta replace: Osteocarpum acropterum var. deminutum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Osteocarpum scleropterum replace: Osteocarpum x scleropterum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Osteocarpum sp replace: Osteocarpum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Osteocarpum spp. + replace: Osteocarpum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ottelia spp. + replace: Ottelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Oxalis aff. rubens (Mornington Peninsula) replace: Oxalis sp. [Oxalis aff. rubens (Mornington Peninsula); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6406,7 +5556,7 @@ taxonomic_updates: replace: Oxalis corniculata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxalis exilis/perennans replace: Oxalis sp. [Oxalis exilis/perennans; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -6417,72 +5567,139 @@ taxonomic_updates: reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-10) taxonomic_resolution: genus -- find: Oxalis sp. aff. exilis (glabrescent) - replace: Oxalis sp. [Oxalis sp. aff. exilis (glabrescent); White_2020] - reason: match_09. Rewording taxon with term `affinis` preceding species epithet - to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) +- find: Oxalis sp. aff. exilis (glabrescent) + replace: Oxalis sp. [Oxalis sp. aff. exilis (glabrescent); White_2020] + reason: match_09. Rewording taxon with term `affinis` preceding species epithet + to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) + taxonomic_resolution: genus +- find: Oxalis spp. + replace: Oxalis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Oxychloris spp. + replace: Oxychloris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Oxylobium spp. + replace: Oxylobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) taxonomic_resolution: genus - find: Ozothamnus argophyllus subsp. argophyllus replace: Ozothamnus argophyllus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ozothamnus spp. + replace: Ozothamnus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pachycornia spp. replace: Tecticornia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Pachymitus spp. + replace: Pachymitus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pandorea spp. + replace: Pandorea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Panicum spp. + replace: Panicum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Paquerina scapigera MS replace: Brachyscome scapigera reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Paracaleana spp. + replace: Caleana sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Parantennaria spp. + replace: Parantennaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Parietaria cardiostegia/debilis replace: Parietaria sp. [Parietaria cardiostegia/debilis; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Parietaria spp. + replace: Parietaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Parsonsia spp. + replace: Parsonsia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Paspalidium spp. + replace: Paspalidium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Passiflora spp. + replace: Passiflora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Patersonia spp. + replace: Patersonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pelargonium australe subsp. australe replace: Pelargonium australe var. australe reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pelargonium littorale subsp. helmsii replace: Pelargonium littorale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pelargonium littorale subsp. inodorum replace: Pelargonium littorale reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pellaea aff. paradoxa (Floating Islands) replace: Pellaea sp. [Pellaea aff. paradoxa (Floating Islands); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Pellaea spp. + replace: Pellaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pentachondra spp. + replace: Pentachondra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pentapogon spp. + replace: Pentapogon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Persicaria lapathifolia (floccose form) replace: Persicaria lapathifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Persoonia chamaepeuce x confertiflora - replace: Persoonia x [Persoonia chamaepeuce x confertiflora; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: species +- find: Persicaria spp. + replace: Persicaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) taxonomic_resolution: genus - find: Persoonia chamaepeuce x Persoonia confertiflora replace: Persoonia x [Persoonia chamaepeuce x Persoonia confertiflora; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Persoonia levis X linearis - replace: Persoonia x [Persoonia levis X linearis; White_2020] +- find: Persoonia chamaepeuce x confertiflora + replace: Persoonia x [Persoonia chamaepeuce x confertiflora; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus -- find: Persoonia levis x myrtilloides subsp. myrtilloides - replace: Persoonia x [Persoonia levis x myrtilloides subsp. myrtilloides; White_2020] +- find: Persoonia levis X linearis + replace: Persoonia x [Persoonia levis X linearis; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus @@ -6492,6 +5709,11 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Persoonia levis x myrtilloides subsp. myrtilloides + replace: Persoonia x [Persoonia levis x myrtilloides subsp. myrtilloides; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Persoonia sericea x Persoonia terminalis replace: Persoonia x [Persoonia sericea x Persoonia terminalis; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -6505,68 +5727,160 @@ taxonomic_updates: - find: Persoonia sp.10 replace: Persoonia sp. [Persoonia sp.10; White_2020] reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Persoonia spp. + replace: Persoonia sp. [White_2020] + reason: Manual alignment to correct genus syntax (Elizabeth Wenk, 2022-11-30) + taxonomic_resolution: genus +- find: Phebalium spp. + replace: Phebalium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pheladenia spp. + replace: Pheladenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Philotheca scaber replace: Philotheca scabra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Philotheca spp. + replace: Philotheca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Philydrum spp. + replace: Philydrum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Phlegmatospermum spp. + replace: Phlegmatospermum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Phragmites spp. + replace: Phragmites sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Phyllangium spp. + replace: Phyllangium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Phyllanthus hirtellus f. A replace: Phyllanthus hirtellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllanthus hirtellus f. B replace: Phyllanthus hirtellus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Phylloglossum spp. + replace: Phylloglossum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Phyllota spp. + replace: Phyllota sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Picris spp. + replace: Picris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pilularia spp. + replace: Pilularia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pimelea curviflora s.l. replace: Pimelea curviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora s.s. replace: Pimelea curviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea linifolia subsp. rubiginosa replace: Pimelea linifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea neo-anglica replace: Pimelea neoanglica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea sp.6 replace: Pimelea sp. [Pimelea sp.6; White_2020] reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth Wenk, 2022-11-22) taxonomic_resolution: genus +- find: Pimelea spp. + replace: Pimelea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Plagiobothrys spp. + replace: Plagiobothrys sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Plantago aff. gaudichaudii (Lowland Swamps) replace: Plantago sp. [Plantago aff. gaudichaudii (Lowland Swamps); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Plantago spp. + replace: Plantago sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Platycerium spp. + replace: Platycerium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Platylobium formosum spp. agg. replace: Platylobium formosum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Platylobium spp. + replace: Platylobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Platysace lanceolata var. ovata replace: Platysace lanceolata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Platysace sp. aff. linearifolia replace: Platysace sp. [Platysace sp. aff. linearifolia; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Platysace spp. + replace: Platysace sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Plectorrhiza spp. + replace: Plectorrhiza sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Plectranthus sp. (Snowy River) replace: Plectranthus sp. [Plectranthus sp. (Snowy River); White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted by APC (2022-11-22) taxonomic_resolution: genus +- find: Plectranthus spp. + replace: Plectranthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pleurosorus spp. + replace: Asplenium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Plinthanthesis spp. + replace: Plinthanthesis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pneumatopteris spp. + replace: Pneumatopteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Poa aff. hothamensis replace: Poa sp. [Poa aff. hothamensis; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6581,22 +5895,22 @@ taxonomic_updates: replace: Poa australis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardierei (blue leaved form) replace: Poa labillardierei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardierei subsp. nervosa replace: Poa labillardierei reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Poa labillardierei var. (Volcanic Plains) replace: Poa labillardierei var. Volcanic Plains reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Poa sp. (Ellery) replace: Poa sp. [Poa sp. (Ellery); White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -6622,28 +5936,88 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Podolepis spp. + replace: Podolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Podolobium spp. + replace: Podolobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Podotheca spp. + replace: Podotheca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pogonolepis spp. + replace: Pogonolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Polycalymma spp. + replace: Polycalymma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Polygala spp. + replace: Polygala sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Polygonaceae spp. + replace: Polygonaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Polyscias sambucifolia subsp. decomposita replace: Polyscias sambucifolia subsp. decomposita MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Polyscias sambucifolia subsp. leptophylla replace: Polyscias sambucifolia subsp. leptophylla MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Polyscias sambucifolia subsp. sambucifolia replace: Polyscias sambucifolia subsp. sambucifolia MS reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Polyscias spp. + replace: Polyscias sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Polystichum spp. + replace: Polystichum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pomaderris aspera x cinerea replace: Pomaderris x [Pomaderris aspera x cinerea; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Pomaderris spp. + replace: Pomaderris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pomax spp. + replace: Pomax sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Poranthera spp. + replace: Poranthera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Portulaca spp. + replace: Portulaca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Posidonia spp. + replace: Posidonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Potamogeton perfoliatus s.s. replace: Potamogeton perfoliatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Potamogeton spp. + replace: Potamogeton sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Prasophyllum aff. correctum (Basalt Plain) replace: Prasophyllum sp. [Prasophyllum aff. correctum (Basalt Plain); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6743,12 +6117,12 @@ taxonomic_updates: replace: Prasophyllum alpinum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum patens s.l. replace: Prasophyllum patens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp replace: Prasophyllum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6758,11 +6132,15 @@ taxonomic_updates: replace: Prasophyllum sp. Moama (D.L.Jones 19276) reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prasophyllum sp. Moama (D.L. Jones 19276) replace: Prasophyllum sp. Moama (D.L.Jones 19276) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Prasophyllum spp. + replace: Prasophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pratia spp. replace: Lobelia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6771,27 +6149,27 @@ taxonomic_updates: - find: Prostanthera lasianthos variant 'Girraween/Polblue' replace: Prostanthera lasianthos Girraween/Polblue variant reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Prostanthera lasianthos variant 'New England smooth-leaved' replace: Prostanthera lasianthos New England smooth-leaved variant reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera lasianthos variant 'rheophytic' replace: Prostanthera lasianthos Rheophytic variant reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera lasianthos variant 'subcoriacea' replace: Prostanthera lasianthos var. subcoriacea reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera lasianthos variant 'typical' replace: Prostanthera lasianthos Typical variant reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Prostanthera lasianthos x spinosa replace: Prostanthera x [Prostanthera lasianthos x spinosa; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -6801,16 +6179,64 @@ taxonomic_updates: replace: Prostanthera ovalifolia var. latifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Prostanthera spp. + replace: Prostanthera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Prunella aff. vulgaris (Montane) replace: Prunella sp. [Prunella aff. vulgaris (Montane); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Pseudanthus spp. + replace: Pseudanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pseuderanthemum spp. + replace: Pseuderanthemum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pseudognaphalium spp. + replace: Pseudognaphalium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pseudoraphis spp. + replace: Pseudoraphis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Psilotum nudum var. fallacinum replace: Psilotum nudum var. fallicinum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Psilotum spp. + replace: Psilotum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Psoralea spp. + replace: Psoralea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Psychotria spp. + replace: Psychotria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Psychrophila spp. + replace: Psychrophila sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pteridium spp. + replace: Pteridium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pteris spp. + replace: Pteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pterocaulon spp. + replace: Pterocaulon sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pterostylis aff. aciculiformis (Beechworth) replace: Pterostylis sp. [Pterostylis aff. aciculiformis (Beechworth); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6840,22 +6266,22 @@ taxonomic_updates: replace: Pterostylis x ingens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis longifolia s.l. replace: Pterostylis longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis parviflora s.l. replace: Pterostylis parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis parviflora s.s. replace: Pterostylis parviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pterostylis sp. aff. boormanii (Beechworth) replace: Pterostylis sp. [Pterostylis sp. aff. boormanii (Beechworth); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6866,49 +6292,93 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-22) taxonomic_resolution: genus +- find: Pterostylis spp. + replace: Pterostylis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ptilothrix spp. + replace: Ptilothrix sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ptilotus nobilis var. replace: Ptilotus nobilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus obovatus var. replace: Ptilotus obovatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus spathulatus f. replace: Ptilotus spathulatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ptilotus spp. + replace: Ptilotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Puccinellia spp. + replace: Puccinellia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pultenaea cambellii replace: Pultenaea campbellii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea gunni subsp. gunni replace: Pultenaea gunnii subsp. gunnii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pultenaea paleacea s.l. replace: Pultenaea paleacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenaea species 1 replace: Pultenaea sp. 1 (W. of Wadbilliga trig) reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pultenaea spp. + replace: Pultenaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Pultenaea teretifolia var. replace: Pultenaea teretifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pycnosorus spp + replace: Pycnosorus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pyrorchis spp. + replace: Pyrorchis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Pyrrosia spp. + replace: Pyrrosia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Quinetia spp. + replace: Quinetia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Radyera spp. + replace: Radyera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ranunculus sp replace: Ranunculus sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Ranunculus spp. + replace: Ranunculus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Restio spp. replace: Restio sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -6918,42 +6388,87 @@ taxonomic_updates: replace: Rhagodia preissii subsp. preissii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Rhagodia spp. + replace: Rhagodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Rhodanthe spp. + replace: Rhodanthe sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Rhyncharrhena sp. replace: Vincetoxicum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Rhyncharrhena sp. + replace: Vincetoxicum sp. [White_2020] + reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level + alignment with `APC known` name (2022-11-23) + taxonomic_resolution: genus +- find: Rhynchospora spp. + replace: Rhynchospora sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Rhytidosporum spp. + replace: Rhytidosporum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Richea spp. + replace: Richea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ricinocarpos spp. + replace: Ricinocarpos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Ripogonum spp. + replace: Ripogonum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Rostellularia adscendens subsp. adscendens var. adscendens replace: Rostellularia adscendens subsp. adscendens reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rostellularia adscendens subsp. adscendens var. latifolia replace: Rostellularia adscendens subsp. adscendens reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rostellularia adscendens subsp. adscendens var. pogonanthera replace: Rostellularia adscendens subsp. adscendens reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rulingia spp. replace: Androcalva sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Rumohra spp. + replace: Rumohra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Ruppia maritima s.l. replace: Ruppia maritima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ruppia maritima s.s. replace: Ruppia maritima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Ruppia spp. + replace: Ruppia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Rutidosis spp. + replace: Rutidosis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Rytidosperma aff. caespitosum (Coastal Variant) replace: Rytidosperma sp. [Rytidosperma aff. caespitosum (Coastal Variant); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6962,7 +6477,7 @@ taxonomic_updates: - find: Rytidosperma aff. caespitosum (South-west swamps) replace: Rytidosperma sp. South-west Swamps (A.C.Beauglehole 22255) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma aff. indutum (Lake Omeo) replace: Rytidosperma sp. [Rytidosperma aff. indutum (Lake Omeo); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -6976,97 +6491,97 @@ taxonomic_updates: - find: Rytidosperma auriculata replace: Rytidosperma auriculatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma caespitosa replace: Rytidosperma caespitosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma carphoides var. replace: Rytidosperma carphoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma duttoniana replace: Rytidosperma duttonianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma eriantha replace: Rytidosperma erianthum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma induta replace: Rytidosperma indutum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma laevis replace: Rytidosperma laeve reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma linkii var. fulva replace: Rytidosperma linkii var. fulvum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma linkii var. linkii replace: Rytidosperma linkii reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma longifolia replace: Rytidosperma longifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma nudiflora replace: Rytidosperma nudiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma pallida replace: Rytidosperma pallidum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma penicillata replace: Rytidosperma penicillatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma pilosa var. replace: Rytidosperma pilosum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma pilosa var. paleacea replace: Rytidosperma pilosum var. paleaceum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma pilosa var. pilosa replace: Rytidosperma pilosum var. pilosum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma procera replace: Rytidosperma procerum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma racemosa var. obtusata replace: Rytidosperma racemosum var. obtusatum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma racemosa var. racemosa replace: Rytidosperma racemosum var. racemosum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma racemosum var. obtusata replace: Rytidosperma racemosum var. obtusatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Rytidosperma semiannularis replace: Rytidosperma semiannulare reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma setacea replace: Rytidosperma setaceum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rytidosperma sp replace: Rytidosperma sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -7077,77 +6592,183 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Rytidosperma spp. + replace: Rytidosperma sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sagina spp. + replace: Sagina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Salsola spp. + replace: Salsola sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Salsola tragus 'strobilifera' replace: Salsola australis var. strobilifera reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Salsola tragus subsp. tragus (narrow-leaf variant) replace: Salsola tragus subsp. tragus reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Sambucus spp. + replace: Sambucus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Samolus spp. + replace: Samolus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Santalaceae spp. + replace: Santalaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family +- find: Santalum spp. + replace: Santalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sarcochilus spp. + replace: Sarcochilus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sarcocornia quinqueflora subsp. quinqueflora replace: Salicornia quinqueflora subsp. quinqueflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Sarcocornia spp. + replace: Salicornia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sarcopetalum spp. + replace: Sarcopetalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sarcostemma spp. replace: Cynanchum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Sarcozona spp. + replace: Sarcozona sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sarga spp. replace: Sorghum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Sauropus spp. + replace: Sauropus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Scaevola spp. + replace: Scaevola sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Schelhammera spp. + replace: Schelhammera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Schenkia spp. + replace: Schenkia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Schizacme spp. + replace: Schizacme sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Schizaea aspera replace: Schizaea asperula reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Schizaea spp. + replace: Schizaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Schizeilema spp. replace: Azorella sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Schoenia spp. + replace: Schoenia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Schoenoplectus spp. + replace: Schoenoplectus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Schoenus spp. + replace: Schoenus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Scirpus spp. + replace: Scirpus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Scirpus spp. (s.l.) replace: Scirpus sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Scleranthus spp. + replace: Scleranthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Scleria spp. + replace: Scleria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Scleroblitum spp. + replace: Scleroblitum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sclerochlamys spp. replace: Sclerochlamys sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APNI` name (2022-11-10) taxonomic_resolution: genus +- find: Sclerolaena X lanata + replace: Sclerolaena x [Sclerolaena X lanata; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus +- find: Sclerolaena X ramsayae + replace: Sclerolaena x [Sclerolaena X ramsayae; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Sclerolaena bicornis var. bifidum replace: Sclerolaena bicornis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena calcarata f. A replace: Sclerolaena calcarata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena calcarata f. B replace: Sclerolaena calcarata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha (erect shrubby form) replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha (prostrate herbaceous form) replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha var. deminuta replace: Sclerolaena diacantha reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena diacantha/uniflora replace: Sclerolaena sp. [Sclerolaena diacantha/uniflora; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -7158,41 +6779,56 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus -- find: Sclerolaena X lanata - replace: Sclerolaena x [Sclerolaena X lanata; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) +- find: Sclerolaena spp. + replace: Sclerolaena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) taxonomic_resolution: genus -- find: Sclerolaena X ramsayae - replace: Sclerolaena x [Sclerolaena X ramsayae; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) +- find: Sclerostegia sp. [White_2020] + replace: Tecticornia sp. [Sclerostegia sp. ; White_2020] + reason: match_20. Rewording name to be recognised as genus rank, with genus known + by APC (2022-11-23) taxonomic_resolution: genus - find: Sclerostegia spp. replace: Sclerostegia sp. [White_2020] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: Scutellaria spp. + replace: Scutellaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sebaea spp. + replace: Sebaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Selaginella spp. + replace: Selaginella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Selliera spp. + replace: Selliera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Senecio anethifolius var. anethifolius replace: Senecio anethifolius subsp. anethifolius reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senecio lautus spp. agg. replace: Senecio lautus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio linearifolius var. glaucus ms. replace: Senecio linearifolius reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio pinnatifolius var. lanceolatus (swamp form) replace: Senecio pinnatifolius var. lanceolatus reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Senecio sp. aff. apargiifolius replace: Senecio sp. [Senecio sp. aff. apargiifolius; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -7212,49 +6848,57 @@ taxonomic_updates: replace: Senecio tenuiflorus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio vagus subsp. elgandulosus replace: Senecio vagus subsp. eglandulosus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisiodes subsp. circinnata replace: Senna artemisioides subsp. circinnata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides nothosubsp. coriaceae replace: Senna artemisioides subsp. x coriacea reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides nothosubsp. sturtii replace: Senna artemisioides subsp. x sturtii reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides spp. agg. replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides subsp. coriacea replace: Senna artemisioides subsp. x coriacea reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. petiolaris replace: Senna artemisioides subsp. x petiolaris reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senna artemisioides subsp. sturtii replace: Senna artemisioides subsp. symonii reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Sesbania spp. + replace: Sesbania sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Setaria distans replace: Scleria distans reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sicyos spp. + replace: Sicyos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sida aff. corrugata (grey-leaf Boort form) replace: Sida sp. [Sida aff. corrugata (grey-leaf Boort form); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -7264,21 +6908,33 @@ taxonomic_updates: replace: Sida corrugata var. A reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sida corrugata var. angustifolia (peltate-hairy form) replace: Sida corrugata var. angustifolia reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sida corrugata var. corrugata (= broad leaf form) replace: Sida corrugata var. corrugata reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Sida sp. (Charters Towers E.J.THompson+ CHA456) replace: Sida sp. Charters Towers E.J.THompson+ CHA456) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sigesbeckia spp. + replace: Sigesbeckia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Siloxerus spp. + replace: Siloxerus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Smilax spp. + replace: Smilax sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Solanum (Indet replace: Solanum sp. [Solanum (Indet; White_2020] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -7292,41 +6948,89 @@ taxonomic_updates: - find: Solanum jacundum replace: Solanum jucundum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Solenogyne spp. + replace: Solenogyne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sorghum sp replace: Sorghum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Sowerbaea spp. + replace: Sowerbaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sparganium spp. + replace: Sparganium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Speculantha sp. aff. parviflora replace: Pterostylis sp. [Speculantha sp. aff. parviflora; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC known` genus (2022-11-10) taxonomic_resolution: genus +- find: Sphaerolobium spp. + replace: Sphaerolobium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sphaerolobium vimineum s.l. replace: Sphaerolobium vimineum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sphaerolobium vimineum s.s. replace: Sphaerolobium vimineum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Sprengelia incarnata f. B - replace: Sprengelia incarnata - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Sphaeromorphaea spp. + replace: Sphaeromorphaea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Spinifex spp. + replace: Spinifex sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Spiranthes spp. + replace: Spiranthes sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Spirodela spp. + replace: Spirodela sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sporadanthus spp. + replace: Sporadanthus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sprengelia incarnata f. 'incarnata' replace: Sprengelia incarnata var. incarnata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Sprengelia incarnata f. B + replace: Sprengelia incarnata + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) + taxonomic_resolution: species +- find: Sprengelia spp. + replace: Sprengelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Spyridium spp. + replace: Spyridium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Stackhousia spp. + replace: Stackhousia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Stellaria palustris var. replace: Stellaria palustris reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stelligera spp. replace: Stelligera sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -7337,125 +7041,235 @@ taxonomic_updates: reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Stemodia spp. + replace: Stemodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Stenanthemum spp. + replace: Stenanthemum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Stenopetalum spp. + replace: Stenopetalum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Stephania spp. + replace: Stephania sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Sticherus spp. + replace: Sticherus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Sticherus tener s.l. replace: Sticherus tener reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sticherus tener s.s. replace: Sticherus tener reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stipa 0anulla replace: Stipa nullanulla reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stipa nitida group replace: Stipa nitida reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stipa scabra subsp. scabra replace: Stipa scabra var. scabra reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Stipa spp. replace: Stipa sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APNI` name (2022-11-10) taxonomic_resolution: genus +- find: Stuartina spp. + replace: Stuartina sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Stylidium calcaratum spp. agg. replace: Stylidium calcaratum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium graminifolium s.l. replace: Stylidium graminifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium graminifolium s.s. replace: Stylidium graminifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Stylidium spp. + replace: Stylidium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Stypandra spp. + replace: Stypandra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Styphelia spp. + replace: Styphelia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Swainsona galegifolia subsp. galegifolia replace: Swainsona galegifolia f. galegifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Swainsona greyana subsp. bracteata replace: Swainsona greyana var. bracteata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona greyana subsp. greyana replace: Swainsona greyana var. greyana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Swainsona oroboides subsp. oroboides replace: Swainsona oroboides var. oroboides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Swainsona spp. + replace: Swainsona sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Symphionema spp. + replace: Symphionema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Symplocos spp. + replace: Symplocos sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Synaptantha spp. + replace: Synaptantha sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Syzygium sp replace: Syzygium sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Syzygium spp. + replace: Syzygium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Taraxacum spp. + replace: Taraxacum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tasmannia spp. + replace: Tasmannia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tecticornia halocnemoides subsp. replace: Tecticornia halocnemoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia indica subsp. replace: Tecticornia indica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia pergranulata subsp. replace: Tecticornia pergranulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tecticornia sp replace: Tecticornia sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Tecticornia spp. + replace: Tecticornia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Telopea spp. + replace: Telopea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Templetonia spp. + replace: Templetonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tetragonia eremaea/tetragonoides replace: Tetragonia sp. [Tetragonia eremaea/tetragonoides; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Tetragonia spp. + replace: Tetragonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tetraria spp. + replace: Tetraria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tetrarrhena spp. + replace: Tetrarrhena sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tetratheca spp. + replace: Tetratheca sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Teucrium racemosum s.l. replace: Teucrium racemosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium racemosum s.s. replace: Teucrium racemosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Teucrium sp. (Pittsworth A.R.Bean 18338) replace: Teucrium sp. Pittsworth (A.R.Bean 18338) reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Teucrium spp. + replace: Teucrium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Thelionema caespitosum var. caeruleum replace: Thelionema caespitosum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelionema spp. + replace: Thelionema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Thelychiton spp. replace: Dendrobium sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Thelymitra X truncata complex + replace: Thelymitra x [Thelymitra X truncata complex; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus +- find: Thelymitra X truncata s.s. + replace: Thelymitra x truncata + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species - find: Thelymitra aff. ixioides (Western Victoria) replace: Thelymitra sp. [Thelymitra aff. ixioides (Western Victoria); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -7464,15 +7278,15 @@ taxonomic_updates: - find: Thelymitra alcockiae ms. replace: Thelymitra alcockiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra alpicola ms. replace: Thelymitra alpicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra alpina ms. replace: Thelymitra alpina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra antennifera x gregaria replace: Thelymitra x [Thelymitra antennifera x gregaria; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -7496,27 +7310,27 @@ taxonomic_updates: - find: Thelymitra incurva ms. replace: Thelymitra incurva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra irregularis replace: Thelymitra x irregularis reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelymitra media X juncifolia + replace: Thelymitra x [Thelymitra media X juncifolia; White_2020] + reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a + genus-level alignment with APC accepted genus (2022-11-10) + taxonomic_resolution: genus - find: Thelymitra media s.l. replace: Thelymitra media reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thelymitra media s.s. replace: Thelymitra media reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Thelymitra media X juncifolia - replace: Thelymitra x [Thelymitra media X juncifolia; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) - taxonomic_resolution: genus + taxonomic_resolution: species - find: Thelymitra nuda X ixioides replace: Thelymitra x [Thelymitra nuda X ixioides; White_2020] reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a @@ -7527,106 +7341,192 @@ taxonomic_updates: reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a genus-level alignment with APC accepted genus (2022-11-10) taxonomic_resolution: genus +- find: Thelymitra nuda-pauciflora complex + replace: Thelymitra sp. [Thelymitra nuda - Thelymitra pauciflora complex; White_2020] + reason: Manual match to genus for taxon that can't be match to species (Elizabeth + Wenk, 2022-11-12) + taxonomic_resolution: genus - find: Thelymitra nuda/pauciflora replace: Thelymitra sp. [Thelymitra nuda/pauciflora; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification to align with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus -- find: Thelymitra nuda-pauciflora complex - replace: Thelymitra sp. [Thelymitra nuda - Thelymitra pauciflora complex; White_2020] - reason: Manual match to genus for taxon that can't be match to species (Elizabeth - Wenk, 2022-11-12) - taxonomic_resolution: Genus -- find: Thelymitra pauciflora s.l. - replace: Thelymitra pauciflora - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Thelymitra pauciflora s.s. - replace: Thelymitra pauciflora - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Thelymitra X truncata complex - replace: Thelymitra x [Thelymitra X truncata complex; White_2020] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-10) +- find: Thelymitra pauciflora s.l. + replace: Thelymitra pauciflora + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: Thelymitra pauciflora s.s. + replace: Thelymitra pauciflora + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-10) + taxonomic_resolution: species +- find: Thelymitra spp. + replace: Thelymitra sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thelypteris spp. + replace: Thelypteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Themeda spp. + replace: Themeda sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thesium spp. + replace: Thesium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thismia spp. + replace: Thismia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thomasia spp. + replace: Thomasia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Threlkeldia spp. + replace: Threlkeldia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thryptomene spp. + replace: Thryptomene sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thynninorchis spp. + replace: Thynninorchis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thyridolepis spp. + replace: Thyridolepis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Thysanotus spp. + replace: Thysanotus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tmesipteris spp. + replace: Tmesipteris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Todea spp. + replace: Todea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) taxonomic_resolution: genus -- find: Thelymitra X truncata s.s. - replace: Thelymitra x truncata - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-10) - taxonomic_resolution: Species - find: Trachymene cf. anisocarpa replace: Trachymene anisocarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trachymene spp. + replace: Trachymene sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tragus spp. + replace: Tragus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trema spp. + replace: Trema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trianthema spp. + replace: Trianthema sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Trianthema triquetra var. triquetra replace: Trianthema triquetrum var. triquetrum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas +- find: Tribulus spp. + replace: Tribulus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trichanthodium spp. + replace: Trichanthodium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tricoryne spp. + replace: Tricoryne sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tricostularia spp. + replace: Tricostularia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Triglochin calcitrapa s.l. replace: Triglochin calcitrapa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species -- find: Triglochin procera (broad erect leaf variant) + taxonomic_resolution: species +- find: Triglochin procera (East Gippsland variant) replace: Triglochin procera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species -- find: Triglochin procera (East Gippsland variant) + taxonomic_resolution: species +- find: Triglochin procera (broad erect leaf variant) replace: Triglochin procera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procera (narrow floating leaf variant) replace: Triglochin procera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procera (small tuber variant) replace: Triglochin procera reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procera s.l. replace: Triglochin procera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procera s.s. replace: Triglochin procera reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin procerum var. procerum replace: Triglochin procera var. procera reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Triglochin sp. aff. procera replace: Triglochin sp. [Triglochin sp. aff. procera; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Triglochin spp. + replace: Triglochin sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Triglochin striata (flat leaf variant) replace: Triglochin striata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin striata (robust terete leaf variant) replace: Triglochin striata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Triglochin striata (small terete leaf variant) replace: Triglochin striata reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Trigonella spp. + replace: Trigonella sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Triodia spp. + replace: Triodia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tripogon spp. replace: Tripogonella sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -7640,37 +7540,89 @@ taxonomic_updates: - find: Triptilodicus pygmaeus replace: Triptilodiscus pygmaeus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Triptilodiscus spp. + replace: Triptilodiscus sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Triraphis spp. + replace: Triraphis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trisetum spp. + replace: Trisetum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Tristaniopsis spp. + replace: Tristaniopsis sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trithuria spp. + replace: Trithuria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trochocarpa spp. + replace: Trochocarpa sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Trymalium spp. + replace: Trymalium sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Tylophora sp. replace: Vincetoxicum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Tylophora spp. + replace: Vincetoxicum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Uncinia spp. replace: Carex sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC known` name (2022-11-10) taxonomic_resolution: genus +- find: Urtica spp. + replace: Urtica sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Utricularia spp. + replace: Utricularia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Vallisneria spp. + replace: Vallisneria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Velleia spp. + replace: Velleia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Verbena officinalis s.l. replace: Verbena officinalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Verbena officinalis subsp. (Yuleba R.Melville+ 3460) replace: Verbena officinalis subsp. Yuleba (R.Melville+ 3460) reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Vernonia cinerea var. cinerea replace: Vernonia cinerea subsp. cinerea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Vernonia spp. + replace: Vernonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Veronica serpyllifolia subsp. serpyllifolia replace: Veronica serpyllifolia reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica sp replace: Veronica sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -7691,6 +7643,14 @@ taxonomic_updates: reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Villarsia spp. + replace: Villarsia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Viminaria spp. + replace: Viminaria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Viola cleistogamoides/sieberana replace: Viola sp. [Viola cleistogamoides/sieberana; White_2020] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -7700,47 +7660,51 @@ taxonomic_updates: replace: Viola hederacea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola hederacea sensu Thiele & Prober replace: Viola hederacea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola hederacea sensu Willis (1972) replace: Viola hederacea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Viola hederacea subsp. nov. (Baw Baws) replace: Viola hederacea subsp. Baw Baws reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Viola hederacea subsp. sieberiana replace: Viola hederacea var. sieberiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Viola seppeltiana replace: Viola hederacea subsp. seppeltiana reason: Manual alignment with canonical name with rank `subspecies` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Viola sieberiana spp. agg. replace: Viola sieberiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia cuneata var. cuneata f. cuneata replace: Vittadinia cuneata f. cuneata reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Vittadinia cuneata var. cuneata f. minor replace: Vittadinia cuneata f. minor reason: Manual alignment with canonical name with rank forma` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Forma + taxonomic_resolution: forma +- find: Vittadinia spp. + replace: Vittadinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Wahlenbergia aff. gracilis (Grampians) replace: Wahlenbergia sp. [Wahlenbergia aff. gracilis (Grampians); White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -7749,76 +7713,153 @@ taxonomic_updates: - find: Wahlenbergia planiflora subsp. longipilis replace: Wahlenbergia planiflora subsp. longipila reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies +- find: Wahlenbergia spp. + replace: Wahlenbergia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Waitzia spp. + replace: Waitzia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Walwhalleya spp. + replace: Walwhalleya sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Westringia spp. + replace: Westringia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Wilsonia spp. + replace: Wilsonia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Wittsteinia spp. + replace: Wittsteinia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Wolffia spp. + replace: Wolffia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Wurmbea spp. + replace: Wurmbea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: X Calassodia sp. nov. (Cyanicula caerulea hybrid) replace: x Calassodia [X Calassodia sp. nov. (Cyanicula caerulea hybrid); White_2020] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus +- find: X Glossadenia tutelata + replace: x Glossadenia tutelata + reason: match_06. Automatic alignment with synonymous term among known canonical + names APC (2022-11-23) + taxonomic_resolution: species - find: Xanthorrhoea australis var. acaulis replace: Xanthorrhoea australis subsp. acaulis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthorrhoea semiplana subsp. replace: Xanthorrhoea semiplana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Xanthorrhoea spp. + replace: Xanthorrhoea sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Xanthosia pusilla spp. agg. replace: Xanthosia pusilla reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Xanthosia spp. + replace: Xanthosia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Xerochrysum bracteatum subsp. barringtonense replace: Xerochrysum bracteatum subsp. barringtonense MS reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xerochrysum bracteatum subsp. bracteatum replace: Xerochrysum bracteatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum bracteatum subsp. interiore replace: Xerochrysum bracteatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum bracteatum subsp. lanatum replace: Xerochrysum bracteatum reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum leucopsideum replace: Helichrysum leucopsideum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xerochrysum sp replace: Xerochrysum sp. [White_2020] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level alignment with `APC accepted` name (2022-11-10) taxonomic_resolution: genus +- find: Xerochrysum spp. + replace: Xerochrysum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Xyris spp. + replace: Xyris sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Zaleya spp. + replace: Zaleya sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus - find: Zieria arborescens subsp. 'europhylla' replace: Zieria arborescens reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria cytisoides subsp. cytisoides replace: Zieria cytisoides var. cytisoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Zieria smithii subsp. tomentosa replace: Zieria smithii var. tomentosa reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Zieria sp. aff. smithii replace: Zieria sp. [Zieria sp. aff. smithii; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet to indicate a genus-level alignment with `APC accepted` genus (2022-11-10) taxonomic_resolution: genus +- find: Zieria spp. + replace: Zieria sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Zornia spp. + replace: Zornia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Zostera spp. + replace: Zostera sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Zoysia spp. + replace: Zoysia sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: genus +- find: Zygophyllaceae spp. + replace: Zygophyllaceae sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) + taxonomic_resolution: family - find: Zygophyllum aff. ammophilum replace: Zygophyllum sp. [Zygophyllum aff. ammophilum; White_2020] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -7832,52 +7873,11 @@ taxonomic_updates: - find: Zygophyllum sp. aff. ammophilum replace: Zygophyllum sp. A (aff. ammophilum) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species -- find: Acmena +C9:D16smithii Rheophytic race - replace: Acmena smithii Rheophytic race - reason: manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: genus -- find: Austrocynoglossum sp. - replace: Hackelia sp. [White_2020] - reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level - alignment with `APC known` name (2022-11-23) - taxonomic_resolution: genus -- find: Correa reflexa 'Anglesea' - replace: Correa reflexa - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-23) - taxonomic_resolution: Species -- find: Gramineae sp. - replace: Poaceae sp. [Gramineae sp.; White_2020] - reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: family -- find: Myoporaceae sp. - replace: Myoporaceae sp. - reason: manual alignment to family (Elizabeth Wenk, 2022-11-23) - taxonomic_resolution: family -- find: Rhyncharrhena sp. - replace: Vincetoxicum sp. [White_2020] - reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level - alignment with `APC known` name (2022-11-23) - taxonomic_resolution: genus -- find: Sclerostegia sp. [White_2020] - replace: Tecticornia sp. [Sclerostegia sp. ; White_2020] - reason: match_20. Rewording name to be recognised as genus rank, with genus known - by APC (2022-11-23) + taxonomic_resolution: species +- find: Zygophyllum spp. + replace: Zygophyllum sp. [White_2020] + reason: Adding dataset_id to genus-level taxon names. (E. Wenk, 2023-06-16) taxonomic_resolution: genus -- find: X Glossadenia tutelata - replace: x Glossadenia tutelata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-23) - taxonomic_resolution: Species -- find: Persoonia spp. - replace: Persoonia sp. [White_2020] - reason: Manual alignment to correct genus syntax (Elizabeth Wenk, 2022-11-30) - taxonomic_resolution: Genus -- find: Callitris spp. - replace: Callitris sp. [White_2020] - reason: Manual alignment to correct genus syntax (Elizabeth Wenk, 2022-11-30) - taxonomic_resolution: Genus exclude_observations: - variable: taxon_name find: Dead tree, 'dead Acacia' stenophylla, 'dead Eucalyptus' camaldulensis var. diff --git a/data/Williams_2005/metadata.yml b/data/Williams_2005/metadata.yml index be9528eb1..1f78fb5f8 100644 --- a/data/Williams_2005/metadata.yml +++ b/data/Williams_2005/metadata.yml @@ -50,7 +50,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(site_name = "western Victoria") ' @@ -333,7 +333,7 @@ taxonomic_updates: replace: Arthropodium strictum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asperula conferta / scoparia replace: Asperula sp. [Asperula conferta / scoparia; Williams_2005] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -348,125 +348,125 @@ taxonomic_updates: replace: Bursaria spinosa subsp. spinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centrolepis strigosa ssp. strigosa replace: Centrolepis strigosa subsp. strigosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chrysocephalum apiculatum s.l. replace: Chrysocephalum apiculatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia glauca spp. agg. (variablis) replace: Craspedia glauca reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia sp. 2 (Derrinallum) replace: Craspedia sp. 2 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptandra amara s.l. replace: Cryptandra amara reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dianella revoluta s.l. replace: Dianella revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera peltata ssp. peltata replace: Drosera peltata subsp. peltata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Drosera whittakeri ssp. aberrans replace: Drosera whittakeri subsp. aberrans reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans ssp. nutans replace: Einadia nutans subsp. nutans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Euchiton involucratus s.s. replace: Euchiton involucratus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium retrorsum s.l. replace: Geranium retrorsum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium solanderi s.l. replace: Geranium solanderi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glycine tabacina s.l. replace: Glycine tabacina reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helichrysum rutidolepis s.l. replace: Helichrysum rutidolepis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hymenanthera dentata s.l. replace: Hymenanthera dentata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Isotoma fluviatilis ssp. australis replace: Isotoma fluviatilis subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Ixiolaena sp. 1 Leptorrynchos panetiodes replace: Leiocarpa panaetioides reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptorhynchos squamatus s.l. replace: Leptorhynchos squamatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lissanthe strigosa ssp. subulata replace: Lissanthe strigosa subsp. subulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra micrantha s.l. replace: Lomandra micrantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxalis perrennans replace: Oxalis perennans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea curviflora s.l. replace: Pimelea curviflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea spinescens ssp. spinescens replace: Pimelea spinescens subsp. spinescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Podolepis jaceoides s.l. replace: Podolepis jaceoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultanea laxiflora / mollis replace: Pultenaea sp. [Pultanea laxiflora / mollis; Williams_2005] reason: match_04_fuzzy. Rewording taxon where `/` indicates uncertain species identification @@ -475,22 +475,22 @@ taxonomic_updates: - find: Stackhousia subterannean replace: Stackhousia subterranea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium graminifolium s.l. replace: Stylidium graminifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Vittadinia dissecta s.l. replace: Vittadinia dissecta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia communis s.l./ luteola replace: Wahlenbergia communis reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia spp.(gracilenta, gracilis, mualticaulis, stricta) replace: Wahlenbergia sp. [Wahlenbergia spp.(gracilenta, gracilis, mualticaulis, stricta); Williams_2005] diff --git a/data/Williams_2011/metadata.yml b/data/Williams_2011/metadata.yml index 4460bd1ad..cbf4ae17b 100644 --- a/data/Williams_2011/metadata.yml +++ b/data/Williams_2011/metadata.yml @@ -63,7 +63,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Clonality = paste0(Clonality,Clonality_b), @@ -492,566 +492,566 @@ taxonomic_updates: replace: Acacia mucronata subsp. longifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia verticillata ssp cephalantha replace: Acacia verticillata subsp. cephalantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia verticillata ssp ovoidea replace: Acacia verticillata subsp. ovoidea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acacia verticillata ssp verticillata replace: Acacia verticillata subsp. verticillata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Acaena ovina replace: Acaena x ovina reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alternanthera sp 1 (Plains) replace: Alternanthera sp. (Plains) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema pendula ssp pendula replace: Amyema pendula subsp. pendula reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Apium prostratum ssp prostratum replace: Apium prostratum subsp. prostratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Arthropodium sp 3 sensu Fl. Victoria 2:660 (1994) replace: Arthropodium sp. 3 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asplenium bulbiferum ssp gracillimum replace: Asplenium bulbiferum subsp. gracillimum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Asterolasia asteriscophora ssp albiflora replace: Asterolasia asteriscophora subsp. albiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Atriplex paludosa ssp paludosa replace: Atriplex paludosa subsp. paludosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Australina pusilla ssp muelleri replace: Australina pusilla subsp. muelleri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa rudis ssp australis replace: Austrostipa rudis subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa rudis ssp nervosa replace: Austrostipa rudis subsp. nervosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa rudis ssp rudis replace: Austrostipa rudis subsp. rudis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa scabra ssp falcata replace: Austrostipa scabra subsp. falcata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Austrostipa scabra ssp scabra replace: Austrostipa scabra subsp. scabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Avicennia marina ssp australasica replace: Avicennia marina subsp. australasica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Baloskion tetraphyllum ssp tetraphyllum replace: Baloskion tetraphyllum subsp. tetraphyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia integrifolia ssp integrifolia replace: Banksia integrifolia subsp. integrifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Banksia spinulosa var cunninghamii replace: Banksia spinulosa var. cunninghamii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Bursaria spinosa ssp spinosa replace: Bursaria spinosa subsp. spinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Calystegia sepium ssp roseata replace: Calystegia sepium subsp. roseata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centipeda minima ssp minima replace: Centipeda minima subsp. minima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Centrolepis strigosa ssp strigosa replace: Centrolepis strigosa subsp. strigosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Cheilanthes sieberi ssp sieberi replace: Cheilanthes sieberi subsp. sieberi reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chenopodium desertorum ssp microphyllum replace: Chenopodium desertorum subsp. microphyllum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Chrysocephalum sp 1 replace: Chrysocephalum sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Convolvulus angustissimus ssp angustissimus replace: Convolvulus angustissimus subsp. angustissimus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Convolvulus angustissimus ssp omnigracilis replace: Convolvulus angustissimus subsp. omnigracilis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Correa glabra var glabra replace: Correa glabra var. glabra reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Correa reflexa s.l. replace: Correa reflexa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Craspedia sp 2 sensu Fl. Victoria 4:763 (1999) replace: Craspedia sp. 2 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cyperus gunnii ssp gunnii replace: Cyperus gunnii subsp. gunnii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Daviesia ulicifolia s.l. replace: Daviesia ulicifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Derwentia derwentiana ssp derwentiana replace: Derwentia derwentiana subsp. derwentiana reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dianella revoluta s.l. replace: Dianella revoluta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dichanthium sericeum ssp sericeum replace: Dichanthium sericeum subsp. sericeum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Disphyma crassifolium ssp clavellatum replace: Disphyma crassifolium subsp. clavellatum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Drosera peltata ssp auriculata replace: Drosera peltata var. auriculata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Drosera peltata ssp peltata replace: Drosera peltata subsp. peltata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Drosera whittakeri ssp aberrans replace: Drosera whittakeri subsp. aberrans reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia nutans ssp nutans replace: Einadia nutans subsp. nutans reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Einadia trigonos ssp trigonos replace: Einadia trigonos subsp. trigonos reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Enchylaena tomentosa var tomentosa replace: Enchylaena tomentosa var. tomentosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Epilobium billardierianum ssp billardierianum replace: Epilobium billardierianum subsp. billardierianum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Epilobium billardierianum ssp cinereum replace: Epilobium billardierianum subsp. cinereum reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Epilobium billardierianum ssp intermedium replace: Epilobium billardierianum subsp. intermedium reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus globulus ssp globulus replace: Eucalyptus globulus subsp. globulus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus leucoxylon ssp connata replace: Eucalyptus leucoxylon subsp. connata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus leucoxylon ssp pruinosa replace: Eucalyptus leucoxylon subsp. pruinosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus pauciflora ssp pauciflora replace: Eucalyptus pauciflora subsp. pauciflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus polyanthemos ssp vestita replace: Eucalyptus polyanthemos subsp. vestita reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus radiata ssp radiata replace: Eucalyptus radiata subsp. radiata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus viminalis ssp pryoriana replace: Eucalyptus viminalis subsp. pryoriana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus viminalis ssp viminalis replace: Eucalyptus viminalis subsp. viminalis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Euphrasia collina ssp muelleri replace: Euphrasia collina subsp. muelleri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Geranium sp 1 sensu Fl. Victoria 4:223 (1999) replace: Geranium sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium sp 2 sensu Fl. Victoria 4:224 (1999) replace: Geranium sp. 2 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium sp 3 sensu Fl. Victoria 4:225 (1999) replace: Geranium sp. 3 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geranium sp 5 sensu Fl. Victoria 4:229 (1999) replace: Geranium sp. 5 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gonocarpus micranthus ssp micranthus replace: Gonocarpus micranthus subsp. micranthus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea decurrens ssp physocarpa replace: Hakea decurrens subsp. physocarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Hakea teretifolia ssp hirsuta replace: Hakea teretifolia subsp. hirsuta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia halocnemoides ssp halocnemoides replace: Halosarcia halocnemoides subsp. halocnemoides reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Halosarcia pergranulata ssp pergranulata replace: Halosarcia pergranulata subsp. pergranulata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Isotoma fluviatilis ssp australis replace: Isotoma fluviatilis subsp. australis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Juncus kraussii ssp australiensis replace: Juncus kraussii subsp. australiensis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lachnagrostis billardierei ssp billardierei replace: Lachnagrostis billardierei subsp. billardierei reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lachnagrostis punicea ssp filifolia replace: Lachnagrostis punicea subsp. filifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lachnagrostis punicea ssp punicea replace: Lachnagrostis punicea subsp. punicea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leptorhynchos squamatus ssp squamatus replace: Leptorhynchos squamatus subsp. squamatus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Leucochrysum albicans ssp albicans var albicans replace: Leucochrysum albicans var. albicans reason: match_12. Automatic alignment with infraspecific canonical name in APC known names when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lissanthe strigosa ssp subulata replace: Lissanthe strigosa subsp. subulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra filiformis ssp coriacea replace: Lomandra filiformis subsp. coriacea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra filiformis ssp filiformis replace: Lomandra filiformis subsp. filiformis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra longifolia ssp exilis replace: Lomandra longifolia subsp. exilis reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra longifolia ssp longifolia replace: Lomandra longifolia subsp. longifolia reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra micrantha ssp micrantha replace: Lomandra micrantha subsp. micrantha reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Lomandra multiflora ssp multiflora replace: Lomandra multiflora subsp. multiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melaleuca lanceolata ssp lanceolata replace: Melaleuca lanceolata subsp. lanceolata reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Melicytus sp. aff. dentatus (Volcanic Plain variant replace: Melicytus sp. aff. dentatus (Volcanic Plain variant) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mentha satureoides replace: Mentha satureioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microseris sp 1 sensu Fl. Victoria 4:701 (1999) replace: Microseris sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Microseris sp 3 sensu Fl. Victoria 4:702 (1999) replace: Microseris sp. 3 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Myoporum sp. (syn. M. viscosum) replace: Myoporum viscosum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ottelia ovalifolia ssp ovalifolia replace: Ottelia ovalifolia subsp. ovalifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Philotheca myoporoides ssp myoporoides replace: Philotheca myoporoides subsp. myoporoides reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea axiflora ssp axiflora replace: Pimelea axiflora subsp. axiflora reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea flava ssp flava replace: Pimelea flava subsp. flava reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea linifolia ssp linifolia replace: Pimelea linifolia subsp. linifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea serpyllifolia ssp serpyllifolia replace: Pimelea serpyllifolia subsp. serpyllifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Pimelea spinescens ssp spinescens replace: Pimelea spinescens subsp. spinescens reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Podolepis sp 1 sensu Fl.Vict. 4:781(1999) replace: Podolepis sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pomaderris paniculosa ssp paralia replace: Pomaderris paniculosa subsp. paralia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Prasophyllum odoratum s.l. replace: Prasophyllum odoratum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus spathulatus forma spathulatus replace: Ptilotus spathulatus f. spathulatus reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Forma + taxonomic_resolution: forma - find: Pultenaea gunnii ssp gunnii replace: Pultenaea gunnii subsp. gunnii reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Rhagodia candolleana ssp candolleana replace: Rhagodia candolleana subsp. candolleana reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Sarcocornia quinqueflora ssp quinqueflora replace: Sarcocornia quinqueflora subsp. quinqueflora reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-12) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Schoenus lepidosperma ssp lepidosperma replace: Schoenus lepidosperma subsp. lepidosperma reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senecio glomeratus ssp glomeratus replace: Senecio glomeratus subsp. glomeratus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senecio glomeratus ssp longifructus replace: Senecio glomeratus subsp. longifructus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Senecio linearifolius s.l. replace: Senecio linearifolius reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stackhousia sp 1 sensu Fl. Victoria 4:51 (1999) replace: Stackhousia sp. 1 reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus tuberosus ssp tuberosus replace: Thysanotus tuberosus subsp. tuberosus reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Viola betonicifolia ssp betonicifolia replace: Viola betonicifolia subsp. betonicifolia reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wahlenbergia stricta ssp stricta replace: Wahlenbergia stricta subsp. stricta reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wurmbea biglandulosa ssp biglandulosa replace: Wurmbea biglandulosa subsp. biglandulosa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Wurmbea dioica ssp dioica replace: Wurmbea dioica subsp. dioica reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Xanthorrhoea minor ssp lutea replace: Xanthorrhoea minor subsp. lutea reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies exclude_observations: .na questions: .na diff --git a/data/Williams_2012/metadata.yml b/data/Williams_2012/metadata.yml index b62f1ed29..27d803eb6 100644 --- a/data/Williams_2012/metadata.yml +++ b/data/Williams_2012/metadata.yml @@ -18,7 +18,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( fire_time_from_fire_to_fruiting = `Reproductive maturity`, @@ -305,11 +305,11 @@ taxonomic_updates: - find: Alphitonia petrei replace: Alphitonia petriei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Clematocissus opaca replace: Clematicissus opaca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra sp. replace: Endiandra sp. [Williams_2012] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -318,7 +318,7 @@ taxonomic_updates: - find: Homalanthus novoguineensis replace: Homalanthus novo-guineensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lauraceae sp. replace: Lauraceae sp. [Williams_2012] reason: match_02. Rewording taxon with ending with `sp.` to indicate a family-level diff --git a/data/Wills_2018/metadata.yml b/data/Wills_2018/metadata.yml index c6c39b65b..4afa6b949 100644 --- a/data/Wills_2018/metadata.yml +++ b/data/Wills_2018/metadata.yml @@ -342,6 +342,6 @@ taxonomic_updates: - find: Syzygium unipunctata replace: Syzygium unipunctatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wilson_2004/metadata.yml b/data/Wilson_2004/metadata.yml index 944db4e47..8423eafd6 100644 --- a/data/Wilson_2004/metadata.yml +++ b/data/Wilson_2004/metadata.yml @@ -38,7 +38,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(resprouting_capacity), replace_duplicates_with_NA)) %>% @@ -176,10 +176,10 @@ taxonomic_updates: - find: Calectasia sp. Pinjar (C. Tauss 557) replace: Calectasia elegans reason: Align to APC accepted synonym (E. Wenk, 2023-06-15) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Stylidium bicolour replace: Stylidium bicolor reason: Align to APC accepted spelling (E. Wenk, 2023-06-15) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wilson_2008/metadata.yml b/data/Wilson_2008/metadata.yml index 47996bfee..4be75a74e 100644 --- a/data/Wilson_2008/metadata.yml +++ b/data/Wilson_2008/metadata.yml @@ -20,7 +20,7 @@ contributors: dataset_curators: Rachael Gallagher dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( leaf_lamina_division = ifelse(stringr::str_detect(`leaf type`,"trifoliate"),"trifoliate",NA), diff --git a/data/Witkowski_1991/metadata.yml b/data/Witkowski_1991/metadata.yml index 5dd272360..b354bec81 100644 --- a/data/Witkowski_1991/metadata.yml +++ b/data/Witkowski_1991/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( location = "Hopetoun" diff --git a/data/Wooller_2002/metadata.yml b/data/Wooller_2002/metadata.yml index d331a79df..f93bb0071 100644 --- a/data/Wooller_2002/metadata.yml +++ b/data/Wooller_2002/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(location = "Fitzgerald River National Park") ' diff --git a/data/Wright_2000/metadata.yml b/data/Wright_2000/metadata.yml index 2b381f730..40da2cfc5 100644 --- a/data/Wright_2000/metadata.yml +++ b/data/Wright_2000/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(row_number = row_number()) %>% filter(!row_number %in% c(849, 1204, 1292, 1355)) %>% @@ -524,81 +524,81 @@ taxonomic_updates: - find: Acacia amblyogona replace: Acacia amblygona reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia aulocarpa replace: Acacia aulacocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia burkitii replace: Acacia burkittii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia chisholmi replace: Acacia chisholmii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia cyclopsis replace: Acacia cyclops reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia maideni replace: Acacia maidenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia podalyriafolia replace: Acacia podalyriifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia reflexa replace: Acacia pulchella var. reflexa reason: Manual alignment with canonical name of rank `varietas` in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Acacia suaevolens replace: Acacia suaveolens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acacia vernicaflua replace: Acacia verniciflua reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena montanum replace: Acaena montana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acaena sanguisorba replace: Acaena sanguisorbae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aceratium concinnnum replace: Aceratium concinnum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aceratium ferruginium replace: Aceratium ferrugineum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmena mackinoniana replace: Acmena mackinnoniana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acmenaspora claviflorus replace: Acmenosperma claviflorum reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia aberans replace: Acronychia aberrans reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Acronychia achronychioides replace: Acronychia acronychioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actinotus helianthii replace: Actinotus helianthi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Actites sp. replace: Actites sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -607,49 +607,49 @@ taxonomic_updates: - find: Adenanthera pasonina replace: Adenanthera pavonina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aegiceras corniculatus replace: Aegiceras corniculatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aegilitis annulata replace: Aegialitis annulata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ailanthus triphora replace: Ailanthus triphysa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Albizia lebbek replace: Albizia lebbeck reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon cornatus replace: Alectryon connatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alectryon repando. replace: Alectryon repandodentatus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aleurites molucanna replace: Aleurites moluccanus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina leuhmannii replace: Allocasuarina luehmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Allocasuarina thallasoscop replace: Allocasuarina thalassoscopica reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia philippensis replace: Alphitonia philippinensis reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ampelocissus R replace: Ampelocissus sp. [Ampelocissus R; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -658,7 +658,7 @@ taxonomic_updates: - find: Amperaea xiphoclada replace: Amperea xiphoclada reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Amyema sp replace: Amyema sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -672,23 +672,23 @@ taxonomic_updates: - find: Angophora cordifolium replace: Angophora cordifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Antidesma erostra replace: Antidesma erostre reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aphananthe philippensis replace: Aphananthe philippinensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Argyrodendron trifoliolata replace: Argyrodendron trifoliolatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Asteromyrtus symphio. replace: Asteromyrtus symphyocarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Atkinsonia sp replace: Atkinsonia sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -698,19 +698,19 @@ taxonomic_updates: replace: Atriplex spongiosa var. holocarpa reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Austromrytus dulcis replace: Austromyrtus dulcis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Austromyrtus angustifolia replace: Asteromyrtus angustifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Baccharis halmifolia replace: Baccharis halimifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Balaustion R replace: Balaustion sp. [Balaustion R; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -719,35 +719,35 @@ taxonomic_updates: - find: Banksia asbyi replace: Banksia ashbyi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia elderana replace: Banksia elderiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banksia hookerana replace: Banksia hookeriana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beilschmedia recurva replace: Beilschmiedia recurva reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Beilschmiedia volksii replace: Beilschmiedia volckii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera largiflora replace: Billardiera longiflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Billardiera longifolia replace: Billardiera longiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Blepharocarya involcrigera replace: Blepharocarya involucrigera reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia falcata replace: Boronia sp. [Boronia falcata; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -756,41 +756,41 @@ taxonomic_updates: - find: Calophyllum calabra replace: Calophyllum calaba reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum inophloium replace: Calophyllum inophyllum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calophyllum soulatri replace: Calophyllum soulattri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Calothamnus lomatophyllus replace: Calothamnus homalophyllus reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Capsella bursapastoris replace: Capsella bursa-pastoris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia circinata replace: Cassia circinnata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cassia marksii replace: Cassia marksiana reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Castanospora aphalandri replace: Castanospora alphandii reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casuarina leuhmannii replace: Casuarina luehmannii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Casuarina rapuana replace: Casuarina sp. [Casuarina rapuana; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -799,44 +799,44 @@ taxonomic_updates: - find: Cayratia eurynemum replace: Cayratia eurynema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centipeda thespedioides replace: Centipeda thespidioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Centrantherum muticum replace: Centratherum muticum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cephalotis follicularis replace: Cephalotus follicularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ceratophyllum macrophyllym replace: Ceratopetalum macrophyllum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cerbera mangas replace: Cerbera manghas reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium melano. replace: Chenopodium melanocarpum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chenopodium rhadin. replace: Dysphania rhadinostachya reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chisocheton longistipitata replace: Chisocheton longistipitatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Chrysophyllum pruiniferum replace: Chrysophyllum pruniferum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cinnamomum cunningham. replace: Cinnamomum sp. [Cinnamomum cunningham.; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -850,65 +850,65 @@ taxonomic_updates: - find: Cissus hastat? replace: Cissus hastata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citriobatus pauciflor. replace: Citriobatus pauciflora reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Citronella smithii replace: Citronella smythii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cochlospermum gullivraei replace: Cochlospermum gillivraei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Codonocarpus cotonif. replace: Codonocarpus cotonifolius reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia bleesii replace: Corymbia bleeseri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Corymbia tesselaris replace: Corymbia tessellaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cossinia australina replace: Cossinia australiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton arhenemicus replace: Croton arnhemicus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Croton verruaxii replace: Croton verreauxii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya bellendenker replace: Cryptocarya bellendenkerana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya bowei replace: Cryptocarya bowiei reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cryptocarya smargadina replace: Cryptocarya smaragdina reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cupaniopsis anarcardioides replace: Cupaniopsis anacardioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Cuphanotus andreanus replace: Cuphonotus andraeanus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darlingia lyrata replace: Darlingia sp. [Darlingia lyrata; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -917,7 +917,7 @@ taxonomic_updates: - find: Daviesia suaevolens replace: Daviesia suaveolens reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Decaisnina sp replace: Decaisnina sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -926,7 +926,7 @@ taxonomic_updates: - find: Delarbrea micheana replace: Delarbrea michieana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diplatia sp replace: Diplatia sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -935,7 +935,7 @@ taxonomic_updates: - find: Diplocyclos palmata replace: Diplocyclos palmatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Diploglottis subglabra replace: Diploglottis sp. [Diploglottis subglabra; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -944,24 +944,24 @@ taxonomic_updates: - find: Dissilaria laxinervis replace: Dissiliaria laxinervis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Doryphora sassafrass replace: Doryphora sassafras reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera burmanii replace: Drosera burmanni reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera eryrthrorhiza replace: Drosera erythrorhiza reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Drosera thysanoptera replace: Drosera thysanosepala reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dryadodaphne sp replace: Dryadodaphne sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -970,20 +970,20 @@ taxonomic_updates: - find: Ehrhetia acuminata replace: Ehretia acuminata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ehrhetia membranifolia replace: Ehretia membranifolia reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus carnea replace: Elaeocarpus sp [Elaeocarpus carnea; Wright_2000] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Elaeocarpus seriopetalus replace: Elaeocarpus sericopetalus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elaeocarpus sp [Elaeocarpus carnea; Wright_2000] replace: Elaeocarpus sp. [Elaeocarpus carnea; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -992,7 +992,7 @@ taxonomic_updates: - find: Elatine gratiolioides replace: Elatine gratioloides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Elatostema NA replace: Elatostema sp. [Elatostema NA; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1001,131 +1001,131 @@ taxonomic_updates: - find: Endiandra anthropophagoru replace: Endiandra anthropophagorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Endiandra longipedicellat replace: Endiandra longipedicellata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epacris obtusifolius replace: Epacris obtusifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Epilobium billardieranum replace: Epilobium billardiereanum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon australasicum replace: Eriostemon australasius reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eriostemon queenslandicum replace: Eriostemon queenslandicus reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Erythrophleum chlorostachus replace: Erythrophleum chlorostachys reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus x vitrea replace: Eucalyptus x vitrea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus balladeniensis replace: Eucalyptus balladoniensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus bauerlenii replace: Eucalyptus baeuerlenii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus dumae replace: Eucalyptus dura reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus georgii replace: Eucalyptus georgei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus gunnii ssp. archeri replace: Eucalyptus archeri reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus lateritica replace: Eucalyptus x lateritica reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus leucophloea replace: Eucalyptus leucophloia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus marsdeni replace: Eucalyptus maideni reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus molucanna replace: Eucalyptus moluccana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus st-johnii replace: Eucalyptus st-johni reason: match_13_fuzzy. Fuzzy match alignment with infraspecific canonical name in APC known when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tenuiramus replace: Eucalyptus tenuiramis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus tetradonta replace: Eucalyptus tetrodonta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus transcontinenta replace: Eucalyptus transcontinentalis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus vernicosa ssp. johnstonii replace: Eucalyptus vernicosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus vernicosa ssp. subcrenulata replace: Eucalyptus vernicosa reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus vitrea replace: Eucalyptus x vitrea reason: match_14. Automatic alignment with species-level name known by APC when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus woollsiana ssp. microcarpa replace: Eucalyptus woollsiana reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalypyus porosa replace: Eucalyptus porosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucryphia milligani replace: Eucryphia milliganii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euodia hoplophila replace: Euodia haplophylla reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Euonymus australasiana replace: Euonymus australiana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Excocaria agallochia replace: Excoecaria agallocha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Faradaya NA replace: Faradaya sp. [Faradaya NA; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1134,11 +1134,11 @@ taxonomic_updates: - find: Ficus melanocarpa replace: Ficus melinocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ficus watkinsoniana replace: Ficus watkinsiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Flacourtia sp. replace: Flacourtia sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1147,19 +1147,19 @@ taxonomic_updates: - find: Flindersia bennetiae replace: Flindersia bennettii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia dulcii replace: Garcinia dulcis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garcinia hunsteinii replace: Garcinia sp. aff. G. hunsteinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Garginia gibbsiae replace: Garcinia gibbsiae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gastonia sp replace: Polyscias sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1168,65 +1168,65 @@ taxonomic_updates: - find: Geisosis benthamiana replace: Geissois benthamiana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Geisosis biagiana replace: Geissois biagiana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion fernandi replace: Glochidion ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion fernandii replace: Glochidion ferdinandi reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glochidion phillippicum replace: Glochidion philippicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Gnaphalium lut-alb replace: Pseudognaphalium luteoalbum reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grevillea tridentata replace: Grevillea triternata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia brevifolia replace: Grewia breviflora reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Grewia latifolius replace: Grewia latifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Guioa subglauca replace: Guioa semiglauca reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Halfordia selenoxylon replace: Halfordia scleroxyla reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Haloragis micranthum replace: Haloragis micrantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hedyotis trachymenioides replace: Hedyotis trachymenoides reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Helichrysum ramossisimum replace: Helichrysum ramosissimum var. curvifolium reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Helicia mortoniana replace: Helicia nortoniana reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hippocratea australis replace: Hippocratea sp. [Hippocratea australis; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1235,144 +1235,144 @@ taxonomic_updates: - find: Hippocratea barbarta replace: Hippocratea barbata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Holosarcia indica replace: Halosarcia indica reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Homalium circumpinnata replace: Homalium circumpinnatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypericum graminifolium replace: Hypericum grandifolium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypocharis radicata replace: Hypochaeris radicata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hypsophila holleyana replace: Hypsophila halleyana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Idiospermum australe replace: Idiospermum australiense reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea calabra replace: Ipomoea calobra reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea eriocarpa replace: Ipomoea eriocarpa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea lonchophylla replace: Ipomoea lonchophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea muelleri replace: Ipomoea muelleri reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea pescaprae replace: Ipomoea pes-caprae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ipomaea plebia replace: Ipomoea plebeia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ixodia achilloides replace: Ixodia achillaeoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jaegera dasyantha replace: Jagera dasyantha reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jaegera javanica replace: Jagera javanica reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Jaegera pseudorhus replace: Jagera pseudorhus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Kleinhovea hospita replace: Kleinhovia hospita reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lamarchea hakeafolia replace: Lamarchea hakeifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leichardtia leptophylla replace: Leichhardtia leptophylla reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum petersenii replace: Leptospermum petersonii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Leptospermum woonoorooran replace: Leptospermum wooroonooran reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lethodon setosa replace: Lethedon setosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Limonium australis replace: Limonium australe reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Litsea connersii replace: Litsea connorsii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Litsea leefiana replace: Litsea leefeana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Logania scrabrella replace: Logania scabrella reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lophostemon conferta replace: Lophostemon confertus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Macadamia hilledbrandei replace: Macadamia hildebrandii reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Maireana georgii replace: Maireana georgei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Malacocera tricorne replace: Malacocera tricornis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mammea tauriga replace: Mammea touriga reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Medicosma farcana replace: Medicosma fareana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melaleuca quinque. replace: Melaleuca quinquenervia reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melicope stripitata replace: Melicope stipitata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Melodinus sp replace: Melodinus sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1386,7 +1386,7 @@ taxonomic_updates: - find: Memecylon parviflorum replace: Memecylon pauciflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Mesua sp replace: Mesua sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1395,15 +1395,15 @@ taxonomic_updates: - find: Milletia megasperma replace: Millettia megasperma reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nematolepis squamosa replace: Nematolepis squamea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Neorites kerediana replace: Neorites kevedianus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Nepenthes sp. replace: Nepenthes sp. [Wright_2000] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -1417,28 +1417,28 @@ taxonomic_updates: - find: Omalanthus novoguiniensis replace: Omalanthus novo-guineensis reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ondinea ?purpurea replace: Ondinea purpurea reason: match_06. Automatic alignment with synonymous term among known canonical names APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ostrearia australina replace: Ostrearia australiana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Oxalis corniculatus replace: Oxalis corniculata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pandorea pandorina replace: Pandorea pandorana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Peripentadenia measii replace: Peripentadenia mearsii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Philotheca deserti/brevifolia replace: Philotheca sp. [Philotheca deserti/brevifolia; Wright_2000] reason: match_04. Rewording taxon where `/` indicates uncertain species identification @@ -1457,39 +1457,39 @@ taxonomic_updates: - find: Pilidiostigma rhytidispermum replace: Pilidiostigma rhytispermum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Piper novaehollandiae replace: Piper novae-hollandiae reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pithecolobium muellerana replace: Pithecolobium muelleriana reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pittosporum phyllyraeoides replace: Pittosporum phillyreoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella australe replace: Planchonella australis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella ribicola replace: Planchonella ripicola reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Planchonella sp.3240 replace: Planchonella sp. (=RFK/3240) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Plectranthus argenteus replace: Plectranthus argentatus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias bellendenkerens replace: Polyscias bellendenkerensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Polyscias mulgraveana replace: Polyscias sp. [Polyscias mulgraveana; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1499,19 +1499,19 @@ taxonomic_updates: replace: Prunus grisea var. grisea reason: match_19. Automatic alignment with species-level canonical name in APNI when notes are ignored (2022-11-10) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Pseudoweinmanni lachno replace: Pseudoweinmannia lachnocarpa reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ptilotus polystachys replace: Ptilotus polystachyus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Randia sessiliflorus replace: Randia sessilis reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rauwenhoffia sp. [Rauwenhoffia tetraphyllus] replace: Uvaria sp. [Rauwenhoffia sp. [Rauwenhoffia tetraphyllus]; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus known @@ -1525,79 +1525,79 @@ taxonomic_updates: - find: Rhodamnia rhodanthema replace: Rhodosphaera rhodanthema reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Rhodomyrtus perragata replace: Rhodomyrtus pervagata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Robinia pseudacacia replace: Robinia pseudoacacia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcomelicope simplicifol. replace: Sarcomelicope simplicifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sarcotoechia sp 2183 replace: Sarcotoechia sp. (=RFK/2183) reason: Manual alignment to canonical name in APNI (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Saurauia andrena replace: Saurauia andreana reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schefflera versteigii replace: Schefflera versteegii reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Schleffera actinophylla replace: Schefflera actinophylla reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sclerolaena tricuspsis replace: Sclerolaena tricuspis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sebastiana chamelaea replace: Sebastiania chamelaea reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Semecarpus australiansis replace: Semecarpus australiensis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloanea langei replace: Sloanea langii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sloanea woolsii replace: Sloanea woollsii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Spermacoce brachystemma replace: Spermacoce brachystema reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Sterculia holtei replace: Sterculia holtzei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syncarpia verucunda replace: Syncarpia verecunda reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium alliilignium replace: Syzygium alliiligneum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium aquium replace: Syzygium aqueum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium argyropdium replace: Syzygium argyropedicum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium bleerseri replace: Syzygium sp. [Syzygium bleerseri; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1606,111 +1606,111 @@ taxonomic_updates: - find: Syzygium booje replace: Syzygium boonjee reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium boonjei replace: Syzygium boonjee reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium buettneranum replace: Syzygium buettnerianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium canicortis replace: Syzygium canicortex reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium corniflorum replace: Syzygium cormiflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium danesiei replace: Syzygium dansiei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium danesii replace: Syzygium dansie reason: match_16_fuzzy. Fuzzy alignment with canonical name in APNI (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium leuhmanii replace: Syzygium luehmannii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium macilwraith. replace: Syzygium macilwraithianum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium macilwraithianu replace: Syzygium macilwraithianum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium minutiflorum replace: Syzygium minutuliflorum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium mootei replace: Syzygium moorei reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium pseudofastifiat replace: Syzygium pseudofastigiatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium pseudofastig. replace: Syzygium pseudofastigiatum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium sharmae replace: Syzygium sharoniae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium trachyphloia replace: Syzygium trachyphloium reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium wex replace: Syzygium wesa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium xerampilum replace: Syzygium xerampelinum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tapeinospermum pseudojambosa replace: Tapeinosperma pseudojambosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tarrietia trifoliata replace: Tarrietia trifoliolata reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tasmannia membranacea replace: Tasmannia membranea reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Templetonia culeata replace: Templetonia aculeata reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Templetonia insipida replace: Templetonia sp. [Templetonia insipida; Wright_2000] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Terminalia arenosa replace: Terminalia arenicola reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Terminalia seriocarpa replace: Terminalia sericocarpa reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetrastigma thorbornianum replace: Tetrastigma thorsborneorum reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Tetrasynandra sp aff replace: Tetrasynandra sp. [Tetrasynandra sp. aff.; Wright_2000] reason: match_09. Rewording taxon with term `affinis` preceding species epithet @@ -1719,15 +1719,15 @@ taxonomic_updates: - find: Tristaniopsis canarioides replace: Tristiropsis canarioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ulex europeus replace: Ulex europaeus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronia gracilis replace: Veronica gracilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Veronica NA replace: Veronica sp. [Veronica NA; Wright_2000] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -1736,41 +1736,41 @@ taxonomic_updates: - find: Vittadenia dissecta replace: Vittadinia dissecta reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wahlenbergia tumidif. replace: Wahlenbergia tumidifructa reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Waterhousea hedraiaphylla replace: Waterhousea hedraiophylla reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Whyanbeelia terraereginae replace: Whyanbeelia terrae-reginae reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Wilkiea sp. 1944 replace: Wilkiea sp. (=RFK/1944) reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon chrysanthos replace: Xanthostemon chrysanthus reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zanthoxylum venificum replace: Zanthoxylum veneficum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Zieria microflora replace: Zieria minutiflora reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Ziziphus quarilocularis replace: Ziziphus quadrilocularis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Acacia tortilis, Batis maritima, Byblis linifolia, Calophyllum calabra, Cissus diff --git a/data/Wright_2001/metadata.yml b/data/Wright_2001/metadata.yml index fdfebdaf2..93eede93a 100644 --- a/data/Wright_2001/metadata.yml +++ b/data/Wright_2001/metadata.yml @@ -26,7 +26,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( rainfall = Site, @@ -196,36 +196,36 @@ taxonomic_updates: replace: Corymbia gummifera reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Dodonaea viscosa angustissima replace: Dodonaea viscosa subsp. angustissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Gompholobium latifolium replace: Gompholobium latifolium reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Lasiopetalum ferrugineum replace: Lasiopetalum ferrugineum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia sp replace: Olearia sp. [Wright_2001] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -235,29 +235,29 @@ taxonomic_updates: replace: Persoonia levis reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Phyllota phyllicoides replace: Phyllota phylicoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pimelea microcephela replace: Pimelea microcephala reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var 1lft. pair replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var. 3lft replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synoum glandulosum replace: Synoum glandulosum reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wright_2002/metadata.yml b/data/Wright_2002/metadata.yml index 58ce273b0..98cf8d1ba 100644 --- a/data/Wright_2002/metadata.yml +++ b/data/Wright_2002/metadata.yml @@ -71,7 +71,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( Kl = Kl*10000, @@ -714,8 +714,8 @@ traits: value_type: mean basis_of_value: measurement replicates: 6.2 - methods: Wright 2001; leaf_stomatal_conductance_per_area_at_Asat; Standard methods were - followed for measuring leaf traits (Bassow & Bazzaz 1997; Eamus et al . 1999; + methods: Wright 2001; leaf_stomatal_conductance_per_area_at_Asat; Standard methods + were followed for measuring leaf traits (Bassow & Bazzaz 1997; Eamus et al . 1999; Reich et al . 1998; Reich et al . 1999). All leaf traits were measured on young to medium-aged, fully expanded, outer-canopy leaves. Measurements of photosynthetic capacity ( A mass and A area ), dark respiration rate ( R d ) and stomatal conductance @@ -1106,62 +1106,62 @@ taxonomic_updates: replace: Dodonaea viscosa subsp. angustissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp.angustissima replace: Dodonaea viscosa subsp. angustissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp.cuneata replace: Dodonaea viscosa subsp. cuneata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Dodonaea viscosa ssp.spatulata replace: Dodonaea viscosa subsp. spatulata reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea daphnoides replace: Pultenaea daphnoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea flexilis replace: Pultenaea flexilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var 1lft replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var 3lft replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Solanum ferocissium replace: Solanum ferocissimum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Thysanotus sp replace: Thysanotus sp. [Wright_2002] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Wright_2006/metadata.yml b/data/Wright_2006/metadata.yml index 45c6b0b90..9ca5968af 100644 --- a/data/Wright_2006/metadata.yml +++ b/data/Wright_2006/metadata.yml @@ -96,7 +96,11 @@ traits: basis_of_value: measurement replicates: unknown method_context: 250mm long branch segment - methods: WD was measured at 250-mm distance by Falster and Westoby. Pickup et al. measured WD at 10 mm2 sapwood crosssectional area for all species, but WD could also be interpolated to 250 mm distance for species at the GLP site. WD was measured on stem segments 40-70 mm in length, following standard methods (Pickup et al. 2005).] Wood density was measured following standard methods. + methods: WD was measured at 250-mm distance by Falster and Westoby. Pickup et al. + measured WD at 10 mm2 sapwood crosssectional area for all species, but WD could + also be interpolated to 250 mm distance for species at the GLP site. WD was measured + on stem segments 40-70 mm in length, following standard methods (Pickup et al. + 2005).] Wood density was measured following standard methods. - var_in: wd_1000 unit_in: mg/mm3 trait_name: wood_density @@ -105,7 +109,7 @@ traits: basis_of_value: measurement replicates: unknown method_context: 1000mm long branch segment - methods: Wood density was measured following standard methods. + methods: Wood density was measured following standard methods. - var_in: leaf size unit_in: mm2 trait_name: leaf_area @@ -217,7 +221,7 @@ taxonomic_updates: - find: Atherosperma moshatum replace: Atherosperma moschatum reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senecio sp. replace: Senecio sp. [Wright_2006] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level diff --git a/data/Wright_2008/metadata.yml b/data/Wright_2008/metadata.yml index 5d762f864..ffeed9b66 100644 --- a/data/Wright_2008/metadata.yml +++ b/data/Wright_2008/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(Species) %>% mutate(across(c(Nfixer), replace_duplicates_with_NA)) %>% @@ -215,11 +215,11 @@ taxonomic_updates: - find: Acacia sublenata replace: Acacia sublanata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Alphitonia excelsia replace: Alphitonia excelsa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Boronia sp replace: Boronia sp. [Wright_2008] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -244,11 +244,11 @@ taxonomic_updates: replace: Grevillea dryandri subsp. dasycarpa reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Grewia retsifolia replace: Grewia retusifolia reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Hibbertia sp replace: Hibbertia sp. [Wright_2008] reason: match_01. Rewording taxon with ending with `sp.` to indicate a genus-level @@ -263,23 +263,23 @@ taxonomic_updates: replace: Pachynema junceum reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Petalostigma bank replace: Petalostigma banksii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Syzygium eucalyptoides ssp. bleeseri replace: Syzygium eucalyptoides subsp. bleeseri reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Triodia microstachys replace: Triodia microstachya reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Xanthostemon psidiodies replace: Xanthostemon psidioides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Wright_2009/metadata.yml b/data/Wright_2009/metadata.yml index df244dc3c..68f8efa7c 100644 --- a/data/Wright_2009/metadata.yml +++ b/data/Wright_2009/metadata.yml @@ -454,19 +454,19 @@ taxonomic_updates: - find: Araucaria bidwilii replace: Araucaria bidwillii reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Astrotrichia floccosa replace: Astrotricha floccosa reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Banskia aemula replace: Banksia aemula reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Eucalyptus haemostoma replace: Eucalyptus haemastoma reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Agathis moorei, Cephalotaxus fortunei, Ginkgo biloba diff --git a/data/Wright_2019/metadata.yml b/data/Wright_2019/metadata.yml index 5e5c5e891..e62867467 100644 --- a/data/Wright_2019/metadata.yml +++ b/data/Wright_2019/metadata.yml @@ -23,7 +23,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% rename(season = date) %>% mutate( @@ -117,7 +117,9 @@ contexts: var_in: method_context values: - value: leaf morphology sample - description: Measurements made on leaf samples collected for leaf morphology measurements. Five recently-matured, fully-expanded and undamaged leaves (including petioles) were collected from each individual + description: Measurements made on leaf samples collected for leaf morphology measurements. + Five recently-matured, fully-expanded and undamaged leaves (including petioles) + were collected from each individual - value: gas exchange sample description: Measurements made on leaf samples collected for gas exchange measurements. traits: @@ -145,9 +147,8 @@ traits: basis_of_value: measurement replicates: 1 method_context: leaf morphology sample - methods: One-sided projected leaf area was determined (flatbed scanner), - oven-dried mass (70 deg C for at least 48 h) and thus SLA (area per dry mass; - cm2 g-1). + methods: One-sided projected leaf area was determined (flatbed scanner), oven-dried + mass (70 deg C for at least 48 h) and thus SLA (area per dry mass; cm2 g-1). - var_in: C% unit_in: '%' trait_name: leaf_C_per_dry_mass @@ -167,7 +168,11 @@ traits: value_type: raw basis_of_value: measurement replicates: 1 - methods: Area-based leaf N calculated from mass-based concentrations. Total N concentration of leaf and soil samples was measured with a LECO TruSpec CHN analyser; total P by ICP-OES, on nitric acid digests (analyses run at Appleton Lab, University of Queensland). Area-based leaf N and P concentrations were calculated from mass-based concentrations and the mean SLA value for each species/age class. + methods: Area-based leaf N calculated from mass-based concentrations. Total N concentration + of leaf and soil samples was measured with a LECO TruSpec CHN analyser; total + P by ICP-OES, on nitric acid digests (analyses run at Appleton Lab, University + of Queensland). Area-based leaf N and P concentrations were calculated from mass-based + concentrations and the mean SLA value for each species/age class. - var_in: P% unit_in: '%' trait_name: leaf_P_per_dry_mass @@ -410,9 +415,8 @@ traits: basis_of_value: measurement replicates: 1 method_context: gas exchange sample - methods: One-sided projected leaf area was determined (flatbed scanner), - oven-dried mass (70 deg C for at least 48 h) and thus SLA (area per dry mass; - cm2 g-1). + methods: One-sided projected leaf area was determined (flatbed scanner), oven-dried + mass (70 deg C for at least 48 h) and thus SLA (area per dry mass; cm2 g-1). - var_in: Al unit_in: mg/kg trait_name: leaf_Al_per_dry_mass @@ -546,7 +550,10 @@ traits: value_type: raw basis_of_value: measurement replicates: 1 - methods: Area-based leaf N calculated from mass-based concentrations. Leaf lamina material used in photosynthetic measurements was oven-dried and pooled per species/age class, then analysed for 13C/12C and 15N/14N stable isotope composition at the Stable Isotopes Laboratory, Australian National University, Canberra. + methods: Area-based leaf N calculated from mass-based concentrations. Leaf lamina + material used in photosynthetic measurements was oven-dried and pooled per species/age + class, then analysed for 13C/12C and 15N/14N stable isotope composition at the + Stable Isotopes Laboratory, Australian National University, Canberra. - var_in: d15N_bark unit_in: '{delta}[ppth]' trait_name: bark_delta15N diff --git a/data/Yang_2023/metadata.yml b/data/Yang_2023/metadata.yml index 583a1854e..d30cfec59 100644 --- a/data/Yang_2023/metadata.yml +++ b/data/Yang_2023/metadata.yml @@ -81,7 +81,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( seedbank_longevity = seed_longevity_categorical, @@ -206,7 +206,7 @@ contexts: description: Time from fire to flowering measured on resprouting shoots. - find: fire_killed value: from seed - description: Time from fire to flowering measured on plants that germinated post-fire. + description: Time from fire to flowering measured on plants that germinated post-fire. traits: - var_in: fire_response unit_in: .na @@ -370,7 +370,8 @@ traits: basis_of_value: expert_score replicates: .na methods: The trait value is manually scored from the textual taxon description in - the source (Flora of Australia, a state flora, or the taxonomic literature). (unmapping, because identical scoring to the trait serotinous) + the source (Flora of Australia, a state flora, or the taxonomic literature). (unmapping, + because identical scoring to the trait serotinous) - var_in: seed_storage_location unit_in: .na trait_name: seedbank_location @@ -409,10 +410,10 @@ substitutions: replace: canopy_seedbank - trait_name: seedbank_location find: soil - replace: soil_seedbank + replace: soil_seedbank - trait_name: seedbank_longevity find: short_persistent - replace: 2--3 + replace: 2--3 - trait_name: seedbank_longevity find: persistent replace: .na @@ -468,86 +469,86 @@ substitutions: find: fire_avoidance_in_water replace: aquatic_taxon taxonomic_updates: -- find: Dryandra lindleyana subsp. lindleyana var. lindleyana - replace: Dryandra lindleyana subsp. lindleyana - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies -- find: Dryandra lindleyana subsp. lindleyana var. mellicula - replace: Dryandra lindleyana subsp. lindleyana - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: Subspecies -- find: Paraprasophyllum paulineae - replace: Prasophyllum paulinae - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-22) - taxonomic_resolution: Species -- find: Pterostylis xaenigma - replace: Pterostylis x aenigma - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: Species -- find: Thelychiton speciosus subsp. speciosus - replace: Thelychiton speciosus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Tricostularia sp. Porongurup (I. Abbott 18) - replace: Tricostularia sp. Porongurup (I.Abbott 18) - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: Species - find: Banksia spinulosa var. collina-spinulosa intergrade replace: Banksia spinulosa var. collina reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted when notes are ignored (2022-11-22) - taxonomic_resolution: Varietas -- find: Sida sp. pindan - replace: Sida sp. Pindan (B.G.Thomson 3398) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: varietas - find: Crocosmia xcrocosmiiflora replace: Crocosmia x crocosmiiflora reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Darwinia sp. Ravensthorpe (G.J. Keighery 8030) replace: Darwinia sp. Ravensthorpe (G.J.Keighery 8030) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Dryandra lindleyana subsp. lindleyana var. lindleyana + replace: Dryandra lindleyana subsp. lindleyana + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-22) + taxonomic_resolution: subspecies +- find: Dryandra lindleyana subsp. lindleyana var. mellicula + replace: Dryandra lindleyana subsp. lindleyana + reason: match_12. Automatic alignment with infraspecific canonical name in APC known + names when notes are ignored (2022-11-22) + taxonomic_resolution: subspecies +- find: Dryopoa dives subsp. dives + replace: Dryopoa dives + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Echinochloa crusgalli replace: Echinochloa crus-galli reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Freesia alba x leichtlinii replace: Freesia alba x Freesia leichtlinii reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Muehlenbeckia diclina subsp. diclina + replace: Muehlenbeckia diclina + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-22) + taxonomic_resolution: species +- find: Paraprasophyllum paulineae + replace: Prasophyllum paulinae + reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in + APC (2022-11-22) + taxonomic_resolution: species +- find: Pimelea curviflora subsp. sericea + replace: Pimelea curviflora var. sericea + reason: match_06. Automatic alignment with synonymous term among accepted canonical + names in APC (2022-11-21) + taxonomic_resolution: varietas - find: Pterostylis sp. broad petals (S.D. Hopper 4429) replace: Pterostylis sp. broad petals (S.D.Hopper 4429) reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Pterostylis xaenigma + replace: Pterostylis x aenigma + reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) + taxonomic_resolution: species +- find: Sida sp. pindan + replace: Sida sp. Pindan (B.G.Thomson 3398) + reason: match_14. Automatic alignment with species-level canonical name in APC accepted + when notes are ignored (2022-11-21) + taxonomic_resolution: species - find: Stemodia sp. Onslow (A.A. Mitchell 76/148) replace: Stemodia sp. Onslow (A.A.Mitchell 76/148) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species + taxonomic_resolution: species +- find: Thelychiton speciosus subsp. speciosus + replace: Thelychiton speciosus + reason: match_14. Automatic alignment with species-level name known by APC when + notes are ignored (2022-11-22) + taxonomic_resolution: species - find: Thysanotus sp. Great Victoria Desert (A.S. George 8406) replace: Thysanotus sp. Great Victoria Desert (A.S.George 8406) reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: Species -- find: Dryopoa dives subsp. dives - replace: Dryopoa dives - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Muehlenbeckia diclina subsp. diclina - replace: Muehlenbeckia diclina - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: Species -- find: Pimelea curviflora subsp. sericea - replace: Pimelea curviflora var. sericea - reason: match_06. Automatic alignment with synonymous term among accepted canonical - names in APC (2022-11-21) - taxonomic_resolution: Varietas + taxonomic_resolution: species +- find: Tricostularia sp. Porongurup (I. Abbott 18) + replace: Tricostularia sp. Porongurup (I.Abbott 18) + reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Yunusa_2010/metadata.yml b/data/Yunusa_2010/metadata.yml index b5def5712..49e121750 100644 --- a/data/Yunusa_2010/metadata.yml +++ b/data/Yunusa_2010/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Gillian Kowalick dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate(bark_thickness_index = (2*bark_thickness)/(1000*mean_trunk_diameter)) ' diff --git a/data/Zanne_2007/metadata.yml b/data/Zanne_2007/metadata.yml index 03ca3e57f..10ca6170e 100644 --- a/data/Zanne_2007/metadata.yml +++ b/data/Zanne_2007/metadata.yml @@ -21,7 +21,7 @@ contributors: dataset_curators: Ian Wright dataset: data_is_long_format: no - custom_R_code: data %>% mutate(Kl = Kl*10000) + custom_R_code: data %>% mutate(Kl = Kl*10000) collection_date: 2007/2007 taxon_name: species location_name: site ID @@ -179,19 +179,19 @@ taxonomic_updates: replace: Dodonaea viscosa subsp. angustissima reason: match_06. Automatic alignment with synonymous term among accepted canonical names in APC (2022-11-10) - taxonomic_resolution: Subspecies + taxonomic_resolution: subspecies - find: Olearia pimelioides replace: Olearia pimeleoides reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Pultenea flexilis replace: Pultenaea flexilis reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Senna artemisioides var 3lft replace: Senna artemisioides reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na diff --git a/data/Zanne_2009/metadata.yml b/data/Zanne_2009/metadata.yml index a67ad8b60..b067e602f 100644 --- a/data/Zanne_2009/metadata.yml +++ b/data/Zanne_2009/metadata.yml @@ -124,7 +124,7 @@ contributors: dataset_curators: Amy Zanne dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% group_by(name_original, primary_source_id) %>% mutate(observation_num = row_number()) %>% @@ -159,7 +159,7 @@ taxonomic_updates: replace: Acacia leucophylla reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name in `APC known` when everything except first 2 words ignored (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Aglaia indet replace: Aglaia sp. [Aglaia indet; Zanne_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -208,7 +208,7 @@ taxonomic_updates: - find: Litsea domarensis replace: Litsea domariensis reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-10) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Psychotria indet replace: Psychotria sp. [Psychotria indet; Zanne_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted @@ -218,7 +218,7 @@ taxonomic_updates: replace: Tristiropsis sp. [Tristiropsis subangula; Zanne_2009] reason: Manual match to genus for taxon that can't be match to species (Elizabeth Wenk, 2022-11-12) - taxonomic_resolution: Genus + taxonomic_resolution: genus - find: Wilkiea indet replace: Wilkiea sp. [Wilkiea indet; Zanne_2009] reason: match_20. Rewording name to be recognised as genus rank, with genus accepted diff --git a/data/Zieminska_2013/metadata.yml b/data/Zieminska_2013/metadata.yml index b63f48a93..c510b5e94 100644 --- a/data/Zieminska_2013/metadata.yml +++ b/data/Zieminska_2013/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: data %>% mutate(vessel_diameter = 2*(sqrt(`vessel area (micron^2)`/3.14159))) %>% mutate(`sampling date` = `sampling date` %>% ym() %>% format.Date("%Y-%m")) + custom_R_code: data %>% mutate(vessel_diameter = 2*(sqrt(`vessel area (micron^2)`/3.14159))) %>% mutate(`sampling date` = `sampling date` %>% ym() %>% format.Date("%Y-%m")) collection_date: sampling date taxon_name: species location_name: site diff --git a/data/Zieminska_2015/metadata.yml b/data/Zieminska_2015/metadata.yml index 42e6b3411..254ed6d69 100644 --- a/data/Zieminska_2015/metadata.yml +++ b/data/Zieminska_2015/metadata.yml @@ -32,7 +32,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( vessel_diameter = 2*(sqrt(`vessel area (micron^2)`/3.14159)), diff --git a/data/eFLOWER_2021/metadata.yml b/data/eFLOWER_2021/metadata.yml index e0c1cc16b..d7b8fba2a 100644 --- a/data/eFLOWER_2021/metadata.yml +++ b/data/eFLOWER_2021/metadata.yml @@ -61,7 +61,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% mutate( Date = Date %>% dmy(), @@ -1592,7 +1592,7 @@ taxonomic_updates: replace: Brassica x napus reason: match_14. Automatic alignment with species-level canonical name in APC accepted when notes are ignored (2022-11-12) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: - variable: taxon_name find: Antirrhinum majus, Atropa belladonna, Averrhoa carambola, Byrsonima crassifolia, diff --git a/data/eFLOWER_Dun_2022/metadata.yml b/data/eFLOWER_Dun_2022/metadata.yml index aa191362f..c26b1d3cd 100644 --- a/data/eFLOWER_Dun_2022/metadata.yml +++ b/data/eFLOWER_Dun_2022/metadata.yml @@ -25,7 +25,7 @@ contributors: dataset_curators: Elizabeth Wenk dataset: data_is_long_format: yes - custom_R_code: ' + custom_R_code: ' data %>% group_by(Taxon, Character) %>% mutate(replicate_observation = row_number()) %>% diff --git a/data/vanderMoezel_1987/metadata.yml b/data/vanderMoezel_1987/metadata.yml index c5d5b9477..1505f8b90 100644 --- a/data/vanderMoezel_1987/metadata.yml +++ b/data/vanderMoezel_1987/metadata.yml @@ -19,7 +19,7 @@ contributors: dataset_curators: Sophie Yang dataset: data_is_long_format: no - custom_R_code: ' + custom_R_code: ' data %>% mutate( juvenile_period = case_when( @@ -217,26 +217,26 @@ taxonomic_updates: - find: Alexgeorgia arenicola replace: Alexgeorgea arenicola reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-03-30) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Anigozanthus humilis replace: Anigozanthos humilis reason: Manual alignment with known name - somehow wasn't matching (E. Wenk, 2023-03-30) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Glisschrocaryon aureum var. aureum replace: Glischrocaryon aureum var. aureum reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2023-03-30) - taxonomic_resolution: Varietas + taxonomic_resolution: varietas - find: Lyginea barbata replace: Lyginia barbata reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-03-30) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphaea petiolaris replace: Synaphea petiolaris reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-03-30) - taxonomic_resolution: Species + taxonomic_resolution: species - find: Synaphaea polymorpha replace: Synaphea polymorpha reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2023-03-30) - taxonomic_resolution: Species + taxonomic_resolution: species exclude_observations: .na questions: .na