Code

Constant#10

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Tess-LaCoil merged 36 commits intomastertraitecoevo/hmde:masterfrom constanttraitecoevo/hmde:constantCopy head branch name to clipboardApr 4, 2024

+1,555-418

Commits

Commits on Oct 17, 2023

• Notation (#5)

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  Tess-LaCoil

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  fontikar

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• Added single ind const model, updated rmot_models, rmot_run, rmot vignette. Need to do test files yet.

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Commits on Oct 19, 2023

• Updated the single individual constant model stan file and the testing code.

  Tess-LaCoil

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• Added some comments to the model testing script.

  Tess-LaCoil

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Commits on Oct 31, 2023

• Expending tests: testing run

  dfalster

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• Reorganise if statements

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• Rename file to linear

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Commits on Mar 20, 2024

• Added unit testing of model output for linear data.

  Tess-LaCoil

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• Fixing conflicts.

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• Re-added testing structure.

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• Found problem with unit testing for const model outputs: object y_single/y_multi in global environment not being seen within rmot_assign_data function.

  Tess-LaCoil

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• Added internal testing data so no data is created within test_that() functions, y_single and y_multi are not evaluated globally #1

  fontikar

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• Added internal testing data so no data is created within test_that() functions, y_single and y_multi are not evaluated globally #1

  fontikar

  committed
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• Merge branch 'constant_single_individual' of https://github.com/traitecoevo/rmot into constant_single_individual

  fontikar

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• Skip snapshots on CI

  fontikar

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• Updated snaps

  fontikar

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• Removed snaps as a testing framework and using expect_equal #1

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• Removed skip_on_ci #1

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Commits on Mar 22, 2024

• Updating roxygen version and package doc

  fontikar

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• Updated code to generate testing data

  fontikar

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• Moved helper code in generating fake data, removed internal testing data

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• Updated rmot_assign and tests passing I think

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Commits on Mar 24, 2024

• Completed testing workflow

  fontikar

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Commits on Mar 25, 2024

• Added filepath to saving rds and updated TO DO in assign_data

  fontikar

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• Set tolerance

  fontikar

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• Updated version for checkout

  fontikar

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Commits on Mar 26, 2024

• Added constant data generation and tests based on model output summary for single and multiple individuals. Tests all complete dynamically and when run in the testing console.

  Tess-LaCoil

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Commits on Mar 27, 2024

• Init comit for constant branch

  fontikar

  committed
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• Tess helper funcs

  fontikar

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• Regenerate test data using stan seed method

  dfalster

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Commits on Mar 28, 2024

• using rstan::extract instead of summary

  fontikar

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• Added constant as trigger

  fontikar

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Commits on Apr 3, 2024

• Moved unique code back to make_constant.R

  fontikar

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• Changed test data generation and single- and multi-individual testing structures for constant model.

  Tess-LaCoil

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• Fixed linear regression model testing.

  Tess-LaCoil

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Commits on Apr 4, 2024

• Resolving issues raised in pull request review: changed the set-up of the constant model and removed reference to the constant branch from R-CMD-checn.yaml.

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