diff --git a/NAMESPACE b/NAMESPACE index e0602133..4ab6a394 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -4,8 +4,7 @@ export("%>%") export(build_add_version) export(build_combine) export(build_setup_pipeline) -export(check_duplicates) -export(check_pivot_wider) +export(check_pivot_duplicates) export(dataset_build) export(dataset_configure) export(dataset_find_taxon) diff --git a/R/pivot.R b/R/pivot.R index 7ebf0f18..cd742750 100644 --- a/R/pivot.R +++ b/R/pivot.R @@ -5,7 +5,6 @@ #' @param dataset Built dataset with `test_build_dataset` #' #' @return Number of rows with duplicates preventing pivoting wider -#' @export check_pivot_wider <- function(dataset) { @@ -27,7 +26,7 @@ check_pivot_wider <- function(dataset) { if (duplicates == 0) { invisible(TRUE) } else { - invisible(FALSE) + invisible(FALSE) } } diff --git a/R/process.R b/R/process.R index e7b79b0c..5608b120 100644 --- a/R/process.R +++ b/R/process.R @@ -191,6 +191,7 @@ dataset_process <- function(filename_data_raw, # Record methods methods <- process_format_methods(metadata, dataset_id, sources, contributors) + # Retrieve taxonomic details for known species taxonomic_updates <- traits %>% @@ -1902,7 +1903,7 @@ dataset_update_taxonomy <- function(austraits_raw, taxa) { columns_in_taxon_list <- names(taxa) - # incoming table from austraits_raw is a list of all taxa for the study + # Incoming table from `austraits_raw` is a list of all taxa for the study # `original_name` and `aligned_name` will be different if # there were taxonomic_updates specified in metadata file austraits_raw$taxonomic_updates <- @@ -1922,7 +1923,8 @@ dataset_update_taxonomy <- function(austraits_raw, taxa) { taxa %>% dplyr::select(dplyr::all_of(c("aligned_name", "taxon_name"))) ) %>% dplyr::select(dplyr::all_of(c("dataset_id", "taxon_name")), dplyr::everything()) %>% - # for taxa where there is no taxon_name to matched to a "aligned_name", maintain the "aligned_name" as the "taxon_name" + # For taxa where there is no `taxon_name` to matched to a `aligned_name`, + # maintain the `aligned_name` as the `taxon_name` dplyr::mutate( taxon_name = ifelse(is.na(.data$taxon_name), .data$aligned_name, .data$taxon_name)#, ) %>% @@ -1942,13 +1944,13 @@ dataset_update_taxonomy <- function(austraits_raw, taxa) { .data$taxonomic_resolution), taxon_rank = .data$taxonomic_resolution, name_to_match_to = .data$taxon_name, - # Create variable `name_to_match_to` which specifies the part of the taxon name to which matches can be made. - # This step requires taxon_rank. - name_to_match_to = stringr::str_replace(.data$taxon_name, " \\[.+",""), + # Create variable `name_to_match_to` which specifies the part of the taxon name to which matches can be made + # This step requires `taxon_rank` + name_to_match_to = stringr::str_replace(.data$taxon_name, " \\[.+", ""), name_to_match_to = ifelse(!.data$taxon_rank %in% c("species", "subspecies", "series", "variety", "form"), - stringr::word(.data$taxon_name,1), .data$name_to_match_to) + stringr::word(.data$taxon_name, 1), .data$name_to_match_to) ) %>% - # Remove taxon_rank, as it is about to be merged back in, but matches will now be possible to more rows. + # Remove `taxon_rank`, as it is about to be merged back in, but matches will now be possible to more rows select(-dplyr::any_of(c("taxon_rank", "taxonomic_resolution"))) %>% util_df_convert_character() %>% # Merge in all data from taxa. @@ -1967,7 +1969,7 @@ dataset_update_taxonomy <- function(austraits_raw, taxa) { dplyr::distinct(.data$taxon_name, .keep_all = TRUE) %>% dplyr::select(dplyr::any_of(columns_in_taxon_list)) - # Now `taxonomic_resolution` be removed from the traits table. + # Now `taxonomic_resolution` be removed from the traits table austraits_raw$traits <- austraits_raw$traits %>% dplyr::select(-dplyr::all_of(c("taxonomic_resolution"))) @@ -2038,7 +2040,7 @@ write_plaintext <- function(austraits, path) { #' #' @return Tibble with duplicates and pivot columns #' @export -check_duplicates <- function( +check_pivot_duplicates <- function( database_object, dataset_ids = unique(database_object$traits$dataset_id) ) { diff --git a/R/setup.R b/R/setup.R index 1d6accf8..0786365b 100644 --- a/R/setup.R +++ b/R/setup.R @@ -1,10 +1,11 @@ #' Path to the `metadata.yml` file for specified `dataset_id` #' #' @param dataset_id Identifier for a particular study in the database +#' @param path_data Path to folder with data #' #' @return A string -metadata_path_dataset_id <- function(dataset_id) { - file.path("data", dataset_id, "metadata.yml") +metadata_path_dataset_id <- function(dataset_id, path_data = "data") { + file.path(path_data, dataset_id, "metadata.yml") } #' Create a template of file `metadata.yml` for specified `dataset_id` @@ -223,13 +224,13 @@ metadata_user_select_names <- function(title, vars) { #' @inheritParams metadata_path_dataset_id #' #' @export -metadata_check_custom_R_code <- function(dataset_id) { +metadata_check_custom_R_code <- function(dataset_id, path_data = "data") { # Read metadata - metadata <- read_metadata_dataset(dataset_id) + metadata <- read_metadata_dataset(dataset_id, path_data) # Load trait data and run `custom_R_code` - readr::read_csv(file.path("data", dataset_id, "data.csv"), col_types = cols(), guess_max = 100000) %>% + readr::read_csv(file.path(path_data, dataset_id, "data.csv"), col_types = cols(), guess_max = 100000) %>% process_custom_code(metadata[["dataset"]][["custom_R_code"]])() } diff --git a/R/testdata.R b/R/testdata.R index 421ae712..b12ddb1d 100644 --- a/R/testdata.R +++ b/R/testdata.R @@ -68,9 +68,9 @@ dataset_test_worker <- expect( comp$equal, sprintf( - "%s - %s should not contain: %s", + "%s - %s should not contain: '%s'", info, label, - paste(object[!i], collapse = ", ") + paste(object[!i], collapse = "', '") )) invisible(object) @@ -83,7 +83,7 @@ dataset_test_worker <- comp <- compare(all(i), TRUE, ...) expect( comp$equal, - sprintf("%s - does not contain: %s", info, paste(expected[!i], collapse = ", ")) + sprintf("%s - does not contain: '%s'", info, paste(expected[!i], collapse = "', '")) ) invisible(object) @@ -97,9 +97,9 @@ dataset_test_worker <- expect( comp$equal, sprintf( - "%s - %s include(s) invalid terms: %s", + "%s - %s include(s) invalid terms: '%s'", info, label, - paste(object[!i], collapse = ", ") + paste(object[!i], collapse = "', '") )) invisible(object) @@ -167,7 +167,7 @@ dataset_test_worker <- x <- table(unlist(object)) i <- x == 1 comp <- compare(all(i), TRUE) - expect(comp$equal, sprintf("%s - %s not unique: %s", info, label, paste(names(x)[!i], collapse = ", "))) + expect(comp$equal, sprintf("%s - %s not unique: '%s'", info, label, paste(names(x)[!i], collapse = "', '"))) invisible(object) } @@ -279,9 +279,10 @@ dataset_test_worker <- } expect_list_elements_exact_names <- function(object, expected, info) { - for (i in seq_along(object)) + for (i in seq_along(object)) { expect_contains(names(object[[i]]), expected, info = paste(info, i)) expect_allowed(names(object[[i]]), expected, info = paste(info, i), label = "field names") + } invisible(object) } @@ -360,13 +361,13 @@ dataset_test_worker <- context(sprintf("%s", dataset_id)) - # Exists + ## Files exist files <- file.path(s, c("data.csv", "metadata.yml")) for (f in files) { expect_true(file.exists(f), info = sprintf("%s" %+% "\tfile does not exist", red(f))) } - # Check for other files + ## Check for other files vals <- c("data.csv", "metadata.yml", "raw") expect_is_in( dir(s), vals, @@ -374,13 +375,13 @@ dataset_test_worker <- label = "folder" ) - # `data.csv` + ## `data.csv` f <- files[1] expect_silent( data <- read_csv(f, col_types = cols(), guess_max = 1e5, progress = FALSE) # Time columns get reformatted ) - # Check no issues flagged when parsing file + ## Check no issues flagged when parsing file expect_no_error( readr::stop_for_problems(data), info = sprintf(red("`read_csv(%s)`"), f) @@ -388,7 +389,7 @@ dataset_test_worker <- expect_dataframe_valid(data, info = paste0(red(f), "\tdata"), label = "column names") - # Metadata + ## Metadata f <- files[2] expect_allowed_text(readLines(f, encoding = "UTF-8"), info = paste0(red(f), "\tmetadata"), label = "metadata") expect_silent(metadata <- yaml::read_yaml(f)) @@ -397,7 +398,7 @@ dataset_test_worker <- info = red(f), label = "metadata sections" ) - # Custom R code + ## Custom R code txt <- metadata[["dataset"]][["custom_R_code"]] # Check that `custom_R_code` is immediately followed by `collection_date` expect_equal( @@ -408,7 +409,7 @@ dataset_test_worker <- # Apply custom manipulations expect_no_error(data <- process_custom_code(txt)(data), info = paste0(red(f), "\t`custom_R_code`")) - # Source + ## Source expect_list_names_valid(metadata[["source"]], info = sprintf("%s\tsource", red(f)), label = "field names") v <- names(metadata[["source"]]) @@ -443,7 +444,7 @@ dataset_test_worker <- label = "keys" ) - # People + ## People expect_list(metadata[["contributors"]], info = paste0(red(f), "\tcontributors")) expect_list_names_allowed( @@ -452,7 +453,7 @@ dataset_test_worker <- info = paste0(red(f), "\tcontributors"), label = "contributor type fields" ) - # Data collectors + ## Data collectors if (!is.na(metadata[["contributors"]][["data_collectors"]][1])) { expect_list(metadata[["contributors"]][["data_collectors"]], info = paste0(red(f), "\tdata_collectors")) @@ -472,7 +473,7 @@ dataset_test_worker <- } } - # Dataset curators + ## Dataset curators expect_true( !is.null(metadata[["contributors"]][["dataset_curators"]]), info = sprintf("%s\tcontributors - `dataset_curators` is missing", red(f)) @@ -482,14 +483,14 @@ dataset_test_worker <- info = paste0(red(f), "\tcontributors"), label = "`dataset_curators`" ) - # Assistants + ## Assistants if (!is.null(metadata[["contributors"]][["assistants"]][1])) expect_type( metadata[["contributors"]][["assistants"]], "character", info = paste0(red(f), "\tcontributors"), label = "`assistants`" ) - # Dataset + ## Dataset expect_list_names_allowed( metadata[["dataset"]], schema$metadata$elements$dataset$values %>% names(), @@ -506,17 +507,19 @@ dataset_test_worker <- info = paste0(red(f), "\tdataset"), label = "metadata" ) - # Locations - if (length(unlist(metadata[["locations"]])) > 1) { - expect_list(metadata[["locations"]], info = paste0(red(f), "\tlocations")) + ## Locations - expect_silent( - locations <- - metadata$locations %>% - process_format_locations(dataset_id, schema) %>% - process_add_all_columns(names(schema[["austraits"]][["elements"]][["locations"]][["elements"]])) + expect_silent( + locations <- + metadata$locations %>% + process_format_locations(dataset_id, schema) %>% + process_add_all_columns(names(schema[["austraits"]][["elements"]][["locations"]][["elements"]])) ) + if (length(unlist(metadata[["locations"]])) > 1) { + + expect_list(metadata[["locations"]], info = paste0(red(f), "\tlocations")) + expect_dataframe_names_contain( locations, c("dataset_id", "location_name", "location_property", "value"), @@ -524,30 +527,63 @@ dataset_test_worker <- ) for (v in names(metadata$locations)) { + expect_list(metadata[["locations"]][[v]], info = paste0(red(f), "\tlocation ", v)) - expect_contains( - names(metadata[["locations"]][[v]]), - c("latitude (deg)", "longitude (deg)"), - info = paste0(red(f), "\tlocation '", v, "'") - ) + + # If fields do not contain both 'latitude range (deg)' and 'longitude range (deg)' + if (!(all(c("latitude range (deg)", "longitude range (deg)") %in% names(metadata[["locations"]][[v]])))) { + + # Check that it contains 'latitude (deg)' and 'longitude (deg)' + expect_contains( + names(metadata[["locations"]][[v]]), + c("latitude (deg)", "longitude (deg)"), + info = paste0(red(f), "\tlocation '", v, "'") + ) + } } - } - # Contexts - filename_data <- paste0(path_data, "/", dataset_id, "/data.csv") + # Check `location_name`'s from metadata are in dataset and vice versa + expect_true( + !is.null(metadata[["dataset"]][["location_name"]]), + info = paste0(red(files[2]), "\tdataset - `location_name` is missing") + ) + + expect_contains( + names(data), + metadata[["dataset"]][["location_name"]], + info = paste0( + red(files[2]), + "\tdataset - `location_name` column not found in data") + ) + + v <- data[[metadata[["dataset"]][["location_name"]]]] %>% unique %>% na.omit + i <- v %in% names(metadata$locations) + expect_true( + all(i), + info = paste0( + red(f), + "\tlocations - location names from data file not present in metadata: ", + v[!i]) + ) - traits <- - # Read all columns as character type to prevent time data types from being reformatted - readr::read_csv(filename_data, col_types = cols(), guess_max = 100000, progress = FALSE) %>% - process_custom_code(metadata[["dataset"]][["custom_R_code"]])() + i <- names(metadata$locations) %in% v + expect_true( + all(i), + info = paste0( + red(f), + "\tlocations - location names from metadata not present in data file: ", + names(metadata$locations)[!i]) + ) + } + ## Contexts expect_silent( contexts <- metadata$contexts %>% - process_format_contexts(dataset_id, traits) + process_format_contexts(dataset_id, data) ) - ## Check context details load + # Check context details load if (nrow(contexts) > 0) { expect_dataframe_names_contain( @@ -556,6 +592,34 @@ dataset_test_worker <- info = paste0(red(f), "\tcontexts"), label = "field names" ) + # Check that unique context `value`'s only have one unique description + expect_equal( + contexts %>% dplyr::group_by(.data$context_property, .data$value) %>% dplyr::summarise(n = dplyr::n_distinct(.data$description)) %>% + filter(.data$n > 1) %>% nrow(), + 0, info = sprintf( + "%s\tcontexts - `value`'s should only have one unique description each: '%s'", + red(f), + paste( + contexts %>% dplyr::group_by(.data$context_property, .data$value) %>% dplyr::summarise(n = dplyr::n_distinct(.data$description)) %>% + filter(.data$n > 1) %>% dplyr::pull(.data$value) %>% unique(), + collapse = "', '") + ) + ) + + # Check that there are no duplicate `find` fields + expect_equal( + contexts %>% dplyr::group_by(.data$context_property, .data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% + nrow(), + 0, info = sprintf( + "%s\tcontexts - duplicate `find` values detected: '%s'", + red(f), + paste( + contexts %>% dplyr::group_by(.data$context_property, .data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% + dplyr::pull(.data$find) %>% unique(), + collapse = "', '") + ) + ) + for (i in seq_along(metadata$contexts)) { vals <- metadata$contexts[[i]][["values"]] @@ -610,10 +674,10 @@ dataset_test_worker <- } } - # Traits + ## Traits expect_list_elements_contains_names( metadata[["traits"]], - schema$metadata$elements$traits$elements[1:3] %>% names(), # Add `value_type` and `basis_of_value` + c("var_in", "unit_in", "trait_name", "value_type", "basis_of_value"), info = paste0(red(f), "\ttrait") ) @@ -636,7 +700,9 @@ dataset_test_worker <- label = "`trait_name`'s" ) - # Now that traits loaded, check details of context match + # Check no duplicate `var_in`'s + + # Now that traits loaded, check details of contexts match if (nrow(contexts > 0)) { # Check they are in context dataset @@ -646,11 +712,12 @@ dataset_test_worker <- info = paste0(red(files[1]), red(", "), red(files[2]), "\tdata and/or traits metadata") ) + unique2 <- function(x) unique(x[!is.na(x)]) + for (j in unique(contexts[["var_in"]])) { contextsub <- contexts %>% filter(var_in == j) - unique2 <- function(x) unique(x[!is.na(x)]) # Context values align either with a column of data or a column of traits table if (is.null(data[[j]])) { v <- traits[[j]] %>% unique2() @@ -668,11 +735,11 @@ dataset_test_worker <- info = ifelse( "hms" %in% class(v), sprintf( - "%s\tcontexts - context values of '%s' from data file not present in metadata contexts: %s\n\n'%s' has been detected as a time data type and reformatted\n\t-> Please make sure context metadata matches reformatting", - red(f), j, v[!i], j), + "%s\tcontexts - context values of '%s' from data file not present in metadata contexts: '%s'\n\n'%s' has been detected as a time data type and reformatted\n\t-> Please make sure context metadata matches reformatting", + red(f), j, paste(as.character(v)[!i], collapse = "', '"), j), sprintf( - "%s\tcontexts - context values of '%s' from data file not present in metadata: %s", - red(f), j, v[!i])) + "%s\tcontexts - context values of '%s' from data file not present in metadata: '%s'", + red(f), j, paste(v[!i], collapse = "', '"))) ) i <- contextsub[["find"]] %in% v @@ -682,46 +749,70 @@ dataset_test_worker <- info = ifelse( !is.null(data[[j]]), sprintf( - "%s\tcontexts - values of '%s' in metadata not detected in context values from data file: %s", - red(f), j, contextsub[["find"]][!i]), + "%s\tcontexts - values of '%s' in metadata not detected in context values from data file: '%s'", + red(f), j, paste(contextsub[["find"]][!i], collapse = "', '")), sprintf( - "%s\tcontexts - values of '%s' in metadata not detected in context values from traits metadata: %s", - red(f), j, contextsub[["find"]][!i]) + "%s\tcontexts - values of '%s' in metadata not detected in context values from traits metadata: '%s'", + red(f), j, paste(contextsub[["find"]][!i], collapse = "', '")) ) ) } } - # Check value types in metadata and any columns of data + ## Check metadata values are allowed for fields specified in traits metadata + metadata_fields <- c("entity_type", "value_type", "basis_of_value", "basis_of_record") - # XXXX TODO -- also check for entity type, basis of value and any other columns - # Note this only checks for `value_type` at the trait metadata level, which is appropriate for `value_type` - # but may not be appropriate for other fields on the TODO list + for (field in metadata_fields) { - if ("value_type" %in% names(traits)) { + if (field %in% names(traits)) { - i <- traits$value_type %in% names(data) + not_allowed <- schema[[field]][["values"]] %>% names() + i <- traits[[field]] %in% names(data) & !(traits[[field]] %in% not_allowed) + fixed <- traits[[field]][!i] %>% unique() + cols <- traits[[field]][i] %>% unique() - value_type_fixed <- traits$value_type[!i] %>% unique() - value_type_cols <- traits$value_type[i] %>% unique() + # Check fixed values in metadata are allowed + expect_is_in( + fixed, schema[[field]][["values"]] %>% names, + info = paste0(red(f), "\ttraits"), label = sprintf("`%s`", field) + ) - expect_is_in( - value_type_fixed, - schema$value_type$values %>% names, - info = paste0(red(f), "\ttraits"), label = "value types" - ) + # Check column values are allowed + if (length(cols) > 0) { + for (c in cols) { + expect_is_in( + data[[c]] %>% unique(), schema[[field]][["values"]] %>% names, + info = sprintf("%s\t'%s'", red(files[1]), c), + label = sprintf("`%s` column", field) + ) + } + } + } + + ## Check metadata values are allowed for fields specified in dataset metadata + if (field %in% names(metadata[["dataset"]])) { - if (length(value_type_cols) > 0) { - for (v in value_type_cols) + not_allowed <- schema[[field]][["values"]] %>% names() + + # If the metadata field is a column in the data (and not an accepted value of the field) + if (metadata[["dataset"]][[field]] %in% names(data) & !(metadata[["dataset"]][[field]] %in% not_allowed)) { + expect_is_in( + data[[metadata[["dataset"]][[field]]]] %>% unique(), schema[[field]][["values"]] %>% names, + info = sprintf("%s\t'%s'", red(files[1]), metadata[["dataset"]][[field]]), + label = sprintf("`%s` column", field) + ) + # Otherwise check fixed value + } else { expect_is_in( - data[[v]] %>% unique(), - schema$value_type$values %>% names, - info = sprintf("%s\t%s", red(files[1]), v), label = "value type column" + metadata[["dataset"]][[field]], schema[[field]][["values"]] %>% names, + info = paste0(red(f), "\tdataset"), label = sprintf("`%s`", field) ) + } } } - # Substitutions + ## Substitutions + if (!is.na(metadata[["substitutions"]][1])) { expect_list_elements_exact_names( @@ -729,7 +820,6 @@ dataset_test_worker <- schema$metadata$elements$substitutions$values %>% names(), info = paste0(red(f), "\tsubstitution") ) - trait_names <- sapply(metadata[["substitutions"]], "[[", "trait_name") expect_is_in( unique(trait_names), definitions$elements %>% names(), @@ -740,18 +830,33 @@ dataset_test_worker <- info = paste0(red(f), "\tsubstitutions"), label = "`trait_name`'s" ) - # Check for allowable values of categorical variables expect_no_error( x <- metadata[["substitutions"]] %>% util_list_to_df2() %>% split(.$trait_name), info = paste0(red(f), "\tconverting substitutions to a dataframe and splitting by `trait_name`") ) + # Check for allowable values of categorical variables for (trait in names(x)) { - if (!is.null(definitions$elements[[trait]]) && - definitions$elements[[trait]]$type == "categorical") { + # First check no duplicate combinations of `find` + expect_equal( + x[[trait]] %>% dplyr::group_by(.data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% nrow(), + 0, info = sprintf( + "%s\tsubstitutions - duplicate `find` values detected: '%s'", + red(f), + paste( + x[[trait]] %>% dplyr::group_by(.data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% + dplyr::pull(.data$find) %>% unique(), + collapse = "', '") + ) + ) + + # If trait is categorical + if (!is.null(definitions$elements[[trait]]) && definitions$elements[[trait]]$type == "categorical") { + # Check replacement values to_check <- x[[trait]]$replace %>% unique() + # Filter out `flowering_time` values from to-check list to_check <- to_check[!(grepl("^[YyNn]+$", to_check) & stringr::str_length(to_check) == 12)] allowable <- c(definitions$elements[[trait]]$allowed_values_levels %>% names(), NA) failing <- to_check[!( @@ -764,15 +869,34 @@ dataset_test_worker <- info = sprintf( "%s\tsubstitutions - `%s` has invalid replacement values", red(f), trait), - label = failing %>% paste(collapse = ", ") + label = failing %>% paste(collapse = "', '") ) } } } - # Taxonomic updates + ## Taxonomic updates + if (!is.na(metadata[["taxonomic_updates"]][1])) { + expect_no_error( + x <- metadata[["taxonomic_updates"]] %>% util_list_to_df2(), + info = paste0(red(f), "\tconverting `taxonomic_updates` to a dataframe") + ) + + # Check no duplicate `find` values + expect_equal( + x %>% dplyr::group_by(.data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% nrow(), + 0, info = sprintf( + "%s\ttaxonomic_updates - duplicate `find` values detected: '%s'", + red(f), + paste( + x %>% dplyr::group_by(.data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% + dplyr::pull(.data$find) %>% unique(), + collapse = "', '") + ) + ) + expect_list_elements_exact_names( metadata[["taxonomic_updates"]], schema$metadata$elements$taxonomic_updates$values %>% names(), @@ -786,7 +910,7 @@ dataset_test_worker <- } - # Check that special characters do not make it into the data + ## Check that special characters do not make it into the data expect_no_error( parsed_data <- data %>% process_parse_data(dataset_id, metadata, contexts, schema), @@ -797,7 +921,7 @@ dataset_test_worker <- info = sprintf("%s", red(files[1])) ) - # Process data so that you can check excluded observations + ## Process data so that you can check excluded observations parsed_data <- parsed_data$traits %>% process_add_all_columns( @@ -805,7 +929,7 @@ dataset_test_worker <- "parsing_id", "location_name", "taxonomic_resolution", "methods", "unit_in") ) - # Replace original `location_id` with a new `location_id` + ## Replace original `location_id` with a new `location_id` if (nrow(locations) > 0) { parsed_data <- parsed_data %>% @@ -821,7 +945,7 @@ dataset_test_worker <- ) } - # Where missing, fill variables in traits table with values from locations + ## Where missing, fill variables in traits table with values from locations # Trait metadata should probably have precedence -- right now trait metadata # is being read in during `process_parse_data` and getting overwritten here #TODO # If process.R changes, this needs to be updated @@ -847,9 +971,28 @@ dataset_test_worker <- } } - # Excluded observations + ## Excluded observations + if (!is.na(metadata[["exclude_observations"]][1])) { + expect_no_error( + x <- metadata[["exclude_observations"]] %>% util_list_to_df2(), + info = paste0(red(f), "\tconverting `exclude_observations` to a dataframe") + ) + + # Check no duplicate `find` values + expect_equal( + x %>% dplyr::group_by(.data$variable, .data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% nrow(), + 0, info = sprintf( + "%s\texclude_observations - duplicate `find` values detected: '%s'", + red(f), + paste( + x %>% dplyr::group_by(.data$variable, .data$find) %>% dplyr::summarise(n = dplyr::n()) %>% filter(.data$n > 1) %>% + dplyr::pull(.data$find) %>% unique(), + collapse = "', '") + ) + ) + expect_list_elements_exact_names( metadata[["exclude_observations"]], schema$metadata$elements$exclude_observations$values %>% names(), @@ -918,43 +1061,9 @@ dataset_test_worker <- ## For numeric trait data, check it looks reasonable & converts properly - ## Check `location_name`'s are in locations dataset - if (length(unlist(metadata[["locations"]])) > 1) { - - expect_true( - !is.null(metadata[["dataset"]][["location_name"]]), - info = paste0(red(files[2]), "\tdataset - `location_name` is missing") - ) - - expect_contains( - names(data), - metadata[["dataset"]][["location_name"]], - info = paste0( - red(files[2]), - "\tdataset - `location_name` column not found in data") - ) - - v <- data[[metadata[["dataset"]][["location_name"]]]] %>% unique %>% na.omit - i <- v %in% names(metadata$locations) - expect_true( - all(i), - info = paste0( - red(f), - "\tlocations - location names from data file not present in metadata: ", - v[!i]) - ) - - i <- names(metadata$locations) %in% v - expect_true( - all(i), - info = paste0( - red(f), - "\tlocations - location names from metadata not present in data file: ", - names(metadata$locations)[!i]) - ) - } + ## Check traits are not only NAs expect_false( nrow(metadata[["traits"]] %>% util_list_to_df2() %>% dplyr::filter(!is.na(.data$trait_name))) == 0, info = paste0(red(f), "\ttraits - only contain NA `trait_name`'s")) @@ -975,10 +1084,10 @@ dataset_test_worker <- ), info = sprintf("%s\tbuilding dataset", red(dataset_id))) - # Check that traits table is not empty + ## Check that traits table is not empty expect_false(nrow(dataset$traits) == 0, info = sprintf("%s\t`traits` table is empty", red(dataset_id))) - # Check that dataset can pivot wider + ## Check that dataset can pivot wider if (nrow(dataset$traits) > 0) { expect_true( dataset %>% check_pivot_wider(), diff --git a/R/utils.R b/R/utils.R index c953ae43..819b000a 100644 --- a/R/utils.R +++ b/R/utils.R @@ -231,9 +231,9 @@ read_metadata <- function(path) { #' @inheritParams metadata_path_dataset_id #' #' @return A list with contents of metadata for specified `dataset_id` -read_metadata_dataset <- function(dataset_id) { +read_metadata_dataset <- function(dataset_id, path_data = "data") { dataset_id %>% - metadata_path_dataset_id() %>% + metadata_path_dataset_id(path_data = path_data) %>% read_metadata() } diff --git a/inst/support/traits.build_schema.yml b/inst/support/traits.build_schema.yml index 70f70809..74d2cffc 100644 --- a/inst/support/traits.build_schema.yml +++ b/inst/support/traits.build_schema.yml @@ -417,8 +417,8 @@ metadata: values: find: *original_name replace: *taxon_name - reason: Records why the change was implemented, e.g. `typos`, `taxonomic synonyms`, and `standardising spellings`. - taxonomic_resolution: The taxonomic rank of the most specific name that can be aligned. + reason: Records why the change was implemented, e.g. `typos`, `taxonomic synonyms`, and `standardising spellings` + taxonomic_resolution: *taxonomic_resolution exclude_observations: description: A table of observations to remove from the compilation. type: array diff --git a/man/check_duplicates.Rd b/man/check_pivot_duplicates.Rd similarity index 85% rename from man/check_duplicates.Rd rename to man/check_pivot_duplicates.Rd index adbdc869..c26004c9 100644 --- a/man/check_duplicates.Rd +++ b/man/check_pivot_duplicates.Rd @@ -1,10 +1,10 @@ % Generated by roxygen2: do not edit by hand % Please edit documentation in R/process.R -\name{check_duplicates} -\alias{check_duplicates} +\name{check_pivot_duplicates} +\alias{check_pivot_duplicates} \title{Identify duplicates preventing pivoting wider} \usage{ -check_duplicates( +check_pivot_duplicates( database_object, dataset_ids = unique(database_object$traits$dataset_id) ) diff --git a/man/metadata_check_custom_R_code.Rd b/man/metadata_check_custom_R_code.Rd index 9be03c54..f47d6aad 100644 --- a/man/metadata_check_custom_R_code.Rd +++ b/man/metadata_check_custom_R_code.Rd @@ -5,10 +5,12 @@ \title{Check the output of running `custom_R_code` specified in the metadata for specified `dataset_id`} \usage{ -metadata_check_custom_R_code(dataset_id) +metadata_check_custom_R_code(dataset_id, path_data = "data") } \arguments{ \item{dataset_id}{Identifier for a particular study in the database} + +\item{path_data}{Path to folder with data} } \description{ Function to check the output of running `custom_R_code` specified in diff --git a/man/metadata_path_dataset_id.Rd b/man/metadata_path_dataset_id.Rd index d499a39b..c0058d24 100644 --- a/man/metadata_path_dataset_id.Rd +++ b/man/metadata_path_dataset_id.Rd @@ -4,10 +4,12 @@ \alias{metadata_path_dataset_id} \title{Path to the `metadata.yml` file for specified `dataset_id`} \usage{ -metadata_path_dataset_id(dataset_id) +metadata_path_dataset_id(dataset_id, path_data = "data") } \arguments{ \item{dataset_id}{Identifier for a particular study in the database} + +\item{path_data}{Path to folder with data} } \value{ A string diff --git a/man/read_metadata_dataset.Rd b/man/read_metadata_dataset.Rd index 85146463..c28e4101 100644 --- a/man/read_metadata_dataset.Rd +++ b/man/read_metadata_dataset.Rd @@ -4,10 +4,12 @@ \alias{read_metadata_dataset} \title{Read the `metadata.yml` file for specified `dataset_id`} \usage{ -read_metadata_dataset(dataset_id) +read_metadata_dataset(dataset_id, path_data = "data") } \arguments{ \item{dataset_id}{Identifier for a particular study in the database} + +\item{path_data}{Path to folder with data} } \value{ A list with contents of metadata for specified `dataset_id` diff --git a/tests/testthat/config/taxon_list-orig.R b/tests/testthat/config/taxon_list-orig.R index 29876ad3..c870283a 100644 --- a/tests/testthat/config/taxon_list-orig.R +++ b/tests/testthat/config/taxon_list-orig.R @@ -7,5 +7,6 @@ # Then source "build.R" and "R/build_update_taxon_list.R" in "tests/testthat" # Run the function on the built test database with `replace = TRUE` # (Remove the tests from the data folder afterwards) +# Replace config/taxon_list-orig.csv with config/taxon_list.csv build_update_taxon_list(database, read_csv("config/taxon_list.csv"), replace = TRUE) diff --git a/tests/testthat/config/taxon_list-orig.csv b/tests/testthat/config/taxon_list-orig.csv index 764bc6b7..935e7923 100644 --- a/tests/testthat/config/taxon_list-orig.csv +++ b/tests/testthat/config/taxon_list-orig.csv @@ -1,7 +1,9 @@ original_name,aligned_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,aligned_name_taxonomic_status,aligned_name_taxon_id,taxon_id_family,trinomial,binomial,establishment_means Abildgaardia ovata,Abildgaardia ovata,Abildgaardia ovata,NA,Abildgaardia,Cyperaceae,species,APC,accepted,Magnoliidae,"NT, Qld, NSW",Abildgaardia ovata (Burm.f.) Kral,https://id.biodiversity.org.au/node/apni/2919627,https://id.biodiversity.org.au/node/apni/2905759,https://id.biodiversity.org.au/name/apni/150737,Abildgaardia ovata,https://id.biodiversity.org.au/name/apni/150737,accepted,https://id.biodiversity.org.au/node/apni/2919627,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Abildgaardia ovata,native Acacia alpina,Acacia alpina,Acacia alpina,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Acacia alpina F.Muell.,https://id.biodiversity.org.au/node/apni/2907301,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58263,Acacia alpina,https://id.biodiversity.org.au/name/apni/58263,accepted,https://id.biodiversity.org.au/node/apni/2907301,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia alpina,native -Acacia beadleana,Acacia beadleana,Acacia beadleana,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/165277,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/949589,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia beadleana,native +Acacia aneura var. major,Acacia aneura var. major,Acacia aneura var. major,NA,Acacia,Fabaceae,variety,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Acacia aneura var. major Pedley,https://id.biodiversity.org.au/node/apni/2888234,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/169532,Acacia aneura var. major,https://id.biodiversity.org.au/name/apni/230757,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/914729,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia aneura var. major,Acacia aneura,native +Acacia auriculiformis,Acacia auriculiformis,Acacia auriculiformis,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT, Qld",Acacia auriculiformis A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2900508,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58974,Acacia auriculiformis,https://id.biodiversity.org.au/name/apni/58974,accepted,https://id.biodiversity.org.au/node/apni/2900508,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia auriculiformis,native and naturalised +Acacia beadleana,Acacia beadleana,Acacia beadleana,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/244690,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/842202,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia beadleana,native Acacia bulgaensis,Acacia bulgaensis,Acacia bulgaensis,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia bulgaensis Tindale & S.J.Davies,https://id.biodiversity.org.au/node/apni/2889179,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/117995,Acacia bulgaensis,https://id.biodiversity.org.au/name/apni/117995,accepted,https://id.biodiversity.org.au/node/apni/2889179,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia bulgaensis,native Acacia caroleae,Acacia caroleae,Acacia caroleae,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia caroleae Pedley,https://id.biodiversity.org.au/node/apni/2894332,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/60225,Acacia caroleae,https://id.biodiversity.org.au/name/apni/60225,accepted,https://id.biodiversity.org.au/node/apni/2894332,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia caroleae,native Acacia celsa,Acacia celsa,Acacia celsa,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Acacia celsa Tindale,https://id.biodiversity.org.au/taxon/apni/51436506,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/154988,Acacia celsa,https://id.biodiversity.org.au/name/apni/154988,accepted,https://id.biodiversity.org.au/taxon/apni/51436506,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia celsa,native @@ -9,9 +11,14 @@ Acacia crassa,Acacia crassa,Acacia crassa,NA,Acacia,Fabaceae,species,APC,accepte Acacia flexifolia,Acacia flexifolia,Acacia flexifolia,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic",Acacia flexifolia A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2914740,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/63146,Acacia flexifolia,https://id.biodiversity.org.au/name/apni/63146,accepted,https://id.biodiversity.org.au/node/apni/2914740,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia flexifolia,native Acacia gladiiformis,Acacia gladiiformis,Acacia gladiiformis,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia gladiiformis A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2887779,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/63580,Acacia gladiiformis,https://id.biodiversity.org.au/name/apni/63580,accepted,https://id.biodiversity.org.au/node/apni/2887779,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia gladiiformis,native Acacia havilandiorum,Acacia havilandiorum,Acacia havilandiorum,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic",Acacia havilandiorum Maiden,https://id.biodiversity.org.au/node/apni/2897713,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/135274,Acacia havilandiorum,https://id.biodiversity.org.au/name/apni/135274,accepted,https://id.biodiversity.org.au/node/apni/2897713,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia havilandiorum,native +Acacia holosericea,Acacia holosericea,Acacia holosericea , Acacia colei (pro parte misapplied) | Acacia colei (misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia holosericea A.Cunn. ex G.Don,https://id.biodiversity.org.au/node/apni/2908330,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/64393,Acacia holosericea [alternative possible names: Acacia colei (pro parte misapplied) | Acacia colei (misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia holosericea,native +Acacia kempeana,Acacia kempeana,Acacia kempeana , Acacia sibirica (pro parte misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA",Acacia kempeana F.Muell.,https://id.biodiversity.org.au/taxon/apni/51436560,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/65035,Acacia kempeana [alternative possible names: Acacia sibirica (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia kempeana,native Acacia leiocalyx subsp. leiocalyx,Acacia leiocalyx subsp. leiocalyx,Acacia leiocalyx subsp. leiocalyx,NA,Acacia,Fabaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Acacia leiocalyx (Domin) Pedley subsp. leiocalyx,https://id.biodiversity.org.au/node/apni/2894438,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/65375,Acacia leiocalyx subsp. leiocalyx,https://id.biodiversity.org.au/name/apni/65375,accepted,https://id.biodiversity.org.au/node/apni/2894438,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia leiocalyx subsp. leiocalyx,Acacia leiocalyx,native +Acacia lysiphloia,Acacia lysiphloia,Acacia lysiphloia,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia lysiphloia F.Muell.,https://id.biodiversity.org.au/node/apni/2898828,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/66472,Acacia lysiphloia,https://id.biodiversity.org.au/name/apni/66472,accepted,https://id.biodiversity.org.au/node/apni/2898828,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia lysiphloia,native Acacia myrtifolia,Acacia myrtifolia,Acacia myrtifolia,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic, Tas",Acacia myrtifolia (Sm.) Willd.,https://id.biodiversity.org.au/node/apni/2901160,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/162110,Acacia myrtifolia,https://id.biodiversity.org.au/name/apni/162110,accepted,https://id.biodiversity.org.au/node/apni/2901160,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia myrtifolia,native +Acacia neurocarpa,Acacia neurocarpa,Acacia neurocarpa,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT",Acacia neurocarpa A.Cunn. ex Hook.,https://id.biodiversity.org.au/taxon/apni/51286994,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/67333,Acacia neurocarpa,https://id.biodiversity.org.au/name/apni/67333,accepted,https://id.biodiversity.org.au/taxon/apni/51286994,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia neurocarpa,native Acacia ramulosa var. ramulosa,Acacia ramulosa var. ramulosa,Acacia ramulosa var. ramulosa,NA,Acacia,Fabaceae,variety,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Acacia ramulosa W.Fitzg. var. ramulosa,https://id.biodiversity.org.au/node/apni/2915768,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/168882,Acacia ramulosa var. ramulosa,https://id.biodiversity.org.au/name/apni/168882,accepted,https://id.biodiversity.org.au/node/apni/2915768,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia ramulosa var. ramulosa,Acacia ramulosa,native +Acacia shirleyi,Acacia shirleyi,Acacia shirleyi,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Acacia shirleyi Maiden,https://id.biodiversity.org.au/node/apni/2897282,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/70301,Acacia shirleyi,https://id.biodiversity.org.au/name/apni/70301,accepted,https://id.biodiversity.org.au/node/apni/2897282,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia shirleyi,native Acacia spectabilis,Acacia spectabilis,Acacia spectabilis,NA,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW (native and naturalised)",Acacia spectabilis A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2918795,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/70543,Acacia spectabilis,https://id.biodiversity.org.au/name/apni/70543,accepted,https://id.biodiversity.org.au/node/apni/2918795,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Acacia spectabilis,native and naturalised Acacia terminalis subsp. Glabrous form (M.Hancock 94),Acacia terminalis subsp. Glabrous form (M.Hancock 94),Acacia terminalis subsp. Glabrous form (M.Hancock 94),NA,Acacia,Fabaceae,subspecies,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Acacia terminalis subsp. Glabrous form (M.Hancock 94) NSW Herbarium,https://id.biodiversity.org.au/node/apni/2886403,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/199841,Acacia terminalis subsp. Glabrous form (M.Hancock 94),https://id.biodiversity.org.au/name/apni/199841,accepted,https://id.biodiversity.org.au/node/apni/2886403,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia terminalis subsp. Glabrous form (M.Hancock 94),Acacia terminalis,native Acronychia acidula,Acronychia acidula,Acronychia acidula,NA,Acronychia,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Acronychia acidula F.Muell.,https://id.biodiversity.org.au/node/apni/2913200,https://id.biodiversity.org.au/taxon/apni/51446847,https://id.biodiversity.org.au/name/apni/73794,Acronychia acidula,https://id.biodiversity.org.au/name/apni/73794,accepted,https://id.biodiversity.org.au/node/apni/2913200,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Acronychia acidula,native @@ -22,10 +29,12 @@ Alectryon oleifolius,Alectryon oleifolius,Alectryon oleifolius,NA,Alectryon,Sapi Alectryon subdentatus,Alectryon subdentatus,Alectryon subdentatus,NA,Alectryon,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alectryon subdentatus (F.Muell. ex Benth.) Radlk.,https://id.biodiversity.org.au/node/apni/2890534,https://id.biodiversity.org.au/taxon/apni/51299789,https://id.biodiversity.org.au/name/apni/81114,Alectryon subdentatus,https://id.biodiversity.org.au/name/apni/81114,accepted,https://id.biodiversity.org.au/node/apni/2890534,https://id.biodiversity.org.au/taxon/apni/51447212,NA,Alectryon subdentatus,native Aleurites rockinghamensis,Aleurites rockinghamensis,Aleurites rockinghamensis,NA,Aleurites,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Aleurites rockinghamensis (Baill.) P.I.Forst.,https://id.biodiversity.org.au/node/apni/2916622,https://id.biodiversity.org.au/node/apni/2900410,https://id.biodiversity.org.au/name/apni/171057,Aleurites rockinghamensis,https://id.biodiversity.org.au/name/apni/171057,accepted,https://id.biodiversity.org.au/node/apni/2916622,https://id.biodiversity.org.au/taxon/apni/51442249,NA,Aleurites rockinghamensis,native Alphitonia petriei,Alphitonia petriei,Alphitonia petriei,NA,Alphitonia,Rhamnaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alphitonia petriei Braid & C.T.White,https://id.biodiversity.org.au/node/apni/2887911,https://id.biodiversity.org.au/taxon/apni/51446205,https://id.biodiversity.org.au/name/apni/82935,Alphitonia petriei,https://id.biodiversity.org.au/name/apni/82935,accepted,https://id.biodiversity.org.au/node/apni/2887911,https://id.biodiversity.org.au/taxon/apni/51446206,NA,Alphitonia petriei,native -Alstonia scholaris,Alstonia scholaris,Alstonia scholaris,NA,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,accepted,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/taxon/apni/51700686,NA,Alstonia scholaris,native +Alstonia scholaris,Alstonia scholaris,Alstonia scholaris,NA,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,accepted,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/taxon/apni/51736528,NA,Alstonia scholaris,native Amyema preissii,Amyema preissii,Amyema preissii,NA,Amyema,Loranthaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Amyema preissii (Miq.) Tiegh.,https://id.biodiversity.org.au/node/apni/2888430,https://id.biodiversity.org.au/taxon/apni/51438795,https://id.biodiversity.org.au/name/apni/87461,Amyema preissii,https://id.biodiversity.org.au/name/apni/87461,accepted,https://id.biodiversity.org.au/node/apni/2888430,https://id.biodiversity.org.au/taxon/apni/51438796,NA,Amyema preissii,native -Angophora leiocarpa,Angophora leiocarpa,Angophora leiocarpa,NA,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,accepted,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Angophora leiocarpa,native -Arbutus unedo,Arbutus unedo,Arbutus unedo,NA,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,accepted,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/taxon/apni/51436079,NA,Arbutus unedo,naturalised +Angophora leiocarpa,Angophora leiocarpa,Angophora leiocarpa,NA,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,accepted,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Angophora leiocarpa,native +Arbutus unedo,Arbutus unedo,Arbutus unedo,NA,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,accepted,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/taxon/apni/51738121,NA,Arbutus unedo,naturalised +Archidendron kanisii,Archidendron kanisii,Archidendron kanisii,NA,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron kanisii R.S.Cowan,https://id.biodiversity.org.au/node/apni/2910703,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/154409,Archidendron kanisii,https://id.biodiversity.org.au/name/apni/154409,accepted,https://id.biodiversity.org.au/node/apni/2910703,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Archidendron kanisii,native +Archidendron whitei,Archidendron whitei,Archidendron whitei,NA,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron whitei I.C.Nielsen,https://id.biodiversity.org.au/node/apni/2895435,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/116851,Archidendron whitei,https://id.biodiversity.org.au/name/apni/116851,accepted,https://id.biodiversity.org.au/node/apni/2895435,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Archidendron whitei,native Argyrodendron peralatum,Argyrodendron peralatum,Argyrodendron peralatum,NA,Argyrodendron,Malvaceae,species,APC,accepted,Magnoliidae,Qld,Argyrodendron peralatum (F.M.Bailey) Edlin ex I.H.Boas,https://id.biodiversity.org.au/node/apni/2915243,https://id.biodiversity.org.au/taxon/apni/51288410,https://id.biodiversity.org.au/name/apni/100216,Argyrodendron peralatum,https://id.biodiversity.org.au/name/apni/100216,accepted,https://id.biodiversity.org.au/node/apni/2915243,https://id.biodiversity.org.au/taxon/apni/51439248,NA,Argyrodendron peralatum,native Atractocarpus hirtus,Atractocarpus hirtus,Atractocarpus hirtus,NA,Atractocarpus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Atractocarpus hirtus (F.Muell.) Puttock,https://id.biodiversity.org.au/node/apni/2910460,https://id.biodiversity.org.au/taxon/apni/51446611,https://id.biodiversity.org.au/name/apni/146883,Atractocarpus hirtus,https://id.biodiversity.org.au/name/apni/146883,accepted,https://id.biodiversity.org.au/node/apni/2910460,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Atractocarpus hirtus,native Australina pusilla,Australina pusilla,Australina pusilla,NA,Australina,Urticaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas",Australina pusilla (Poir.) Gaudich.,https://id.biodiversity.org.au/node/apni/2913845,https://id.biodiversity.org.au/node/apni/2907879,https://id.biodiversity.org.au/name/apni/113875,Australina pusilla,https://id.biodiversity.org.au/name/apni/113875,accepted,https://id.biodiversity.org.au/node/apni/2913845,https://id.biodiversity.org.au/taxon/apni/51662052,NA,Australina pusilla,native @@ -33,11 +42,11 @@ Brombya platynema,Brombya platynema,Brombya platynema,NA,Brombya,Rutaceae,specie Burmannia disticha,Burmannia disticha,Burmannia disticha,NA,Burmannia,Burmanniaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Burmannia disticha L.,https://id.biodiversity.org.au/node/apni/2900088,https://id.biodiversity.org.au/node/apni/2915743,https://id.biodiversity.org.au/name/apni/70173,Burmannia disticha,https://id.biodiversity.org.au/name/apni/70173,accepted,https://id.biodiversity.org.au/node/apni/2900088,https://id.biodiversity.org.au/node/apni/2887196,NA,Burmannia disticha,native Bursaria spinosa subsp. spinosa,Bursaria spinosa subsp. spinosa,Bursaria spinosa subsp. spinosa,NA,Bursaria,Pittosporaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, Vic, Tas",Bursaria spinosa Cav. subsp. spinosa,https://id.biodiversity.org.au/taxon/apni/51442337,https://id.biodiversity.org.au/taxon/apni/51442339,https://id.biodiversity.org.au/name/apni/142036,Bursaria spinosa subsp. spinosa,https://id.biodiversity.org.au/name/apni/142036,accepted,https://id.biodiversity.org.au/taxon/apni/51442337,https://id.biodiversity.org.au/taxon/apni/51442315,Bursaria spinosa subsp. spinosa,Bursaria spinosa,native Calendula arvensis,Calendula arvensis,Calendula arvensis,NA,Calendula,Asteraceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Calendula arvensis L.,https://id.biodiversity.org.au/node/apni/2891878,https://id.biodiversity.org.au/node/apni/2893748,https://id.biodiversity.org.au/name/apni/95042,Calendula arvensis,https://id.biodiversity.org.au/name/apni/95042,accepted,https://id.biodiversity.org.au/node/apni/2891878,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Calendula arvensis,naturalised -Callistemon purpurascens,Callistemon purpurascens,Callistemon purpurascens,NA,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,accepted,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Callistemon purpurascens,native +Callistemon purpurascens,Callistemon purpurascens,Callistemon purpurascens,NA,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,accepted,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Callistemon purpurascens,native Apophyllum anomalum,Apophyllum anomalum,Capparis anomala,NA,Capparis,Capparaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Capparis anomala (F.Muell.) Byng & Christenh.,https://id.biodiversity.org.au/taxon/apni/51432888,https://id.biodiversity.org.au/taxon/apni/51432886,https://id.biodiversity.org.au/name/apni/50561973,Capparis anomala,https://id.biodiversity.org.au/name/apni/97697,basionym,https://id.biodiversity.org.au/instance/apni/50562214,https://id.biodiversity.org.au/taxon/apni/51433682,NA,Capparis anomala,native -Cardwellia sublimis,Cardwellia sublimis,Cardwellia sublimis,NA,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,accepted,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/taxon/apni/51614274,NA,Cardwellia sublimis,native +Cardwellia sublimis,Cardwellia sublimis,Cardwellia sublimis,NA,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,accepted,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Cardwellia sublimis,native Carex leporina,Carex leporina,Carex leporina,NA,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Carex leporina L.,https://id.biodiversity.org.au/node/apni/2902492,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/135236,Carex leporina,https://id.biodiversity.org.au/name/apni/135236,accepted,https://id.biodiversity.org.au/node/apni/2902492,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Carex leporina,naturalised -Carex cephalotes,Carex cephalotes,Carex pyrenaica var. cephalotes,NA,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/110600,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/946222,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native +Carex cephalotes,Carex cephalotes,Carex pyrenaica var. cephalotes,NA,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/235569,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/946223,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native Carex raleighii,Carex raleighii,Carex raleighii,NA,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Carex raleighii Nelmes,https://id.biodiversity.org.au/node/apni/2910405,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111690,Carex raleighii,https://id.biodiversity.org.au/name/apni/111690,accepted,https://id.biodiversity.org.au/node/apni/2910405,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Carex raleighii,native Carmichaelia exsul,Carmichaelia exsul,Carmichaelia exsul,NA,Carmichaelia,Fabaceae,species,APC,accepted,Magnoliidae,LHI,Carmichaelia exsul F.Muell.,https://id.biodiversity.org.au/node/apni/2915240,https://id.biodiversity.org.au/node/apni/8138105,https://id.biodiversity.org.au/name/apni/112335,Carmichaelia exsul,https://id.biodiversity.org.au/name/apni/112335,accepted,https://id.biodiversity.org.au/node/apni/2915240,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Carmichaelia exsul,native Cassinia compacta,Cassinia compacta,Cassinia compacta , Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied),Cassinia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cassinia compacta F.Muell.,https://id.biodiversity.org.au/node/apni/2909860,https://id.biodiversity.org.au/taxon/apni/51431788,https://id.biodiversity.org.au/name/apni/54723,Cassinia compacta [alternative possible names: Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Cassinia compacta,native @@ -53,8 +62,11 @@ Convolvulus farinosus,Convolvulus farinosus,Convolvulus farinosus,NA,Convolvulus Coprosma niphophila,Coprosma niphophila,Coprosma niphophila,NA,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,NSW,Coprosma niphophila Orchard,https://id.biodiversity.org.au/node/apni/2910618,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78856,Coprosma niphophila,https://id.biodiversity.org.au/name/apni/78856,accepted,https://id.biodiversity.org.au/node/apni/2910618,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Coprosma niphophila,native Coprosma nivalis,Coprosma nivalis,Coprosma nivalis,NA,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Coprosma nivalis W.R.B.Oliv.,https://id.biodiversity.org.au/node/apni/2915002,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78866,Coprosma nivalis,https://id.biodiversity.org.au/name/apni/78866,accepted,https://id.biodiversity.org.au/node/apni/2915002,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Coprosma nivalis,native Correa alba,Correa alba,Correa alba,NA,Correa,Rutaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Correa alba Andrews,https://id.biodiversity.org.au/node/apni/2906721,https://id.biodiversity.org.au/taxon/apni/51447015,https://id.biodiversity.org.au/name/apni/80283,Correa alba,https://id.biodiversity.org.au/name/apni/80283,accepted,https://id.biodiversity.org.au/node/apni/2906721,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Correa alba,native -Corymbia citriodora,Corymbia citriodora,Corymbia citriodora,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,accepted,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Corymbia citriodora,native and naturalised -Corymbia eximia,Corymbia eximia,Corymbia eximia,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,accepted,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Corymbia eximia,native +Corymbia citriodora,Corymbia citriodora,Corymbia citriodora,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,accepted,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Corymbia citriodora,native and naturalised +Corymbia dichromophloia,Corymbia dichromophloia,Corymbia dichromophloia,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Corymbia dichromophloia (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2902117,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119396,Corymbia dichromophloia,https://id.biodiversity.org.au/name/apni/119396,accepted,https://id.biodiversity.org.au/node/apni/2902117,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Corymbia dichromophloia,native +Corymbia eximia,Corymbia eximia,Corymbia eximia,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,accepted,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Corymbia eximia,native +Corymbia foelscheana,Corymbia foelscheana,Corymbia foelscheana,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT",Corymbia foelscheana (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2892950,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119404,Corymbia foelscheana,https://id.biodiversity.org.au/name/apni/119404,accepted,https://id.biodiversity.org.au/node/apni/2892950,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Corymbia foelscheana,native +Corymbia terminalis,Corymbia terminalis,Corymbia terminalis,NA,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Corymbia terminalis (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/7549846,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119435,Corymbia terminalis,https://id.biodiversity.org.au/name/apni/119435,accepted,https://id.biodiversity.org.au/node/apni/7549846,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Corymbia terminalis,native Crassula decumbens,Crassula decumbens,Crassula decumbens,NA,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, ACT, Vic, Tas",Crassula decumbens Thunb.,https://id.biodiversity.org.au/node/apni/2889646,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/83855,Crassula decumbens,https://id.biodiversity.org.au/name/apni/83855,accepted,https://id.biodiversity.org.au/node/apni/2889646,https://id.biodiversity.org.au/taxon/apni/51270792,NA,Crassula decumbens,native Crassula peduncularis,Crassula peduncularis,Crassula peduncularis,NA,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, ACT, Vic, Tas",Crassula peduncularis (Sm.) F.Meigen,https://id.biodiversity.org.au/node/apni/2895654,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/84005,Crassula peduncularis,https://id.biodiversity.org.au/name/apni/84005,accepted,https://id.biodiversity.org.au/node/apni/2895654,https://id.biodiversity.org.au/taxon/apni/51270792,NA,Crassula peduncularis,native Crotalaria brevis,Crotalaria brevis,Crotalaria brevis,NA,Crotalaria,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Crotalaria brevis Domin,https://id.biodiversity.org.au/node/apni/2906180,https://id.biodiversity.org.au/taxon/apni/51300011,https://id.biodiversity.org.au/name/apni/85578,Crotalaria brevis,https://id.biodiversity.org.au/name/apni/85578,accepted,https://id.biodiversity.org.au/node/apni/2906180,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Crotalaria brevis,native @@ -79,7 +91,8 @@ Dillwynia floribunda,Dillwynia floribunda,Dillwynia floribunda,NA,Dillwynia,Faba Dinosperma erythrococcum,Dinosperma erythrococcum,Dinosperma erythrococcum,NA,Dinosperma,Rutaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Dinosperma erythrococcum (F.Muell.) T.G.Hartley,https://id.biodiversity.org.au/node/apni/2897246,https://id.biodiversity.org.au/node/apni/2900591,https://id.biodiversity.org.au/name/apni/157718,Dinosperma erythrococcum,https://id.biodiversity.org.au/name/apni/157718,accepted,https://id.biodiversity.org.au/node/apni/2897246,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Dinosperma erythrococcum,native Dodonaea petiolaris,Dodonaea petiolaris,Dodonaea petiolaris , Dodonaea viscosa subsp. mucronata (pro parte misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Dodonaea petiolaris F.Muell.,https://id.biodiversity.org.au/node/apni/2921131,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72184,Dodonaea petiolaris [alternative possible names: Dodonaea viscosa subsp. mucronata (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51447212,NA,Dodonaea petiolaris,native Dodonaea truncatiales,Dodonaea truncatiales,Dodonaea truncatiales , Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Dodonaea truncatiales F.Muell.,https://id.biodiversity.org.au/node/apni/7870563,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72648,Dodonaea truncatiales [alternative possible names: Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51447212,NA,Dodonaea truncatiales,native -Dovyalis caffra,Dovyalis caffra,Dovyalis caffra,NA,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/86110,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/841664,https://id.biodiversity.org.au/taxon/apni/51436847,NA,Dovyalis caffra,naturalised +Dovyalis caffra,Dovyalis caffra,Dovyalis caffra,NA,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/199157,accepted,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/taxon/apni/51436847,NA,Dovyalis caffra,naturalised +Elaeocarpus angustifolius,Elaeocarpus angustifolius,Elaeocarpus angustifolius , Elaeocarpus grandis (pro parte misapplied),Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,NT,Elaeocarpus angustifolius Blume,https://id.biodiversity.org.au/node/apni/2909850,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115318,Elaeocarpus angustifolius [alternative possible names: Elaeocarpus grandis (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51632282,NA,Elaeocarpus angustifolius,native Elaeocarpus grandis,Elaeocarpus grandis,Elaeocarpus grandis,NA,Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Elaeocarpus grandis F.Muell.,https://id.biodiversity.org.au/node/apni/2895259,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115772,Elaeocarpus grandis,https://id.biodiversity.org.au/name/apni/115772,accepted,https://id.biodiversity.org.au/node/apni/2895259,https://id.biodiversity.org.au/taxon/apni/51632282,NA,Elaeocarpus grandis,native Eleocharis pallens,Eleocharis pallens,Eleocharis pallens,NA,Eleocharis,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Eleocharis pallens S.T.Blake,https://id.biodiversity.org.au/node/apni/2899827,https://id.biodiversity.org.au/taxon/apni/51434435,https://id.biodiversity.org.au/name/apni/67140,Eleocharis pallens,https://id.biodiversity.org.au/name/apni/67140,accepted,https://id.biodiversity.org.au/node/apni/2899827,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Eleocharis pallens,native Endiandra globosa,Endiandra globosa,Endiandra globosa,NA,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra globosa Maiden & Betche,https://id.biodiversity.org.au/node/apni/2901094,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111780,Endiandra globosa,https://id.biodiversity.org.au/name/apni/111780,accepted,https://id.biodiversity.org.au/node/apni/2901094,https://id.biodiversity.org.au/taxon/apni/51438397,NA,Endiandra globosa,native @@ -87,34 +100,39 @@ Endiandra leptodendron,Endiandra leptodendron,Endiandra leptodendron,NA,Endiandr Endiandra microneura,Endiandra microneura,Endiandra microneura,NA,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,Qld,Endiandra microneura C.T.White,https://id.biodiversity.org.au/node/apni/2899314,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111949,Endiandra microneura,https://id.biodiversity.org.au/name/apni/111949,accepted,https://id.biodiversity.org.au/node/apni/2899314,https://id.biodiversity.org.au/taxon/apni/51438397,NA,Endiandra microneura,native Endiandra muelleri,Endiandra muelleri,Endiandra muelleri,NA,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra muelleri Meisn.,https://id.biodiversity.org.au/node/apni/2903619,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111996,Endiandra muelleri,https://id.biodiversity.org.au/name/apni/111996,accepted,https://id.biodiversity.org.au/node/apni/2903619,https://id.biodiversity.org.au/taxon/apni/51438397,NA,Endiandra muelleri,native Epilobium gunnianum,Epilobium gunnianum,Epilobium gunnianum,NA,Epilobium,Onagraceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Epilobium gunnianum Hausskn.,https://id.biodiversity.org.au/node/apni/2903068,https://id.biodiversity.org.au/taxon/apni/51440863,https://id.biodiversity.org.au/name/apni/105579,Epilobium gunnianum,https://id.biodiversity.org.au/name/apni/105579,accepted,https://id.biodiversity.org.au/node/apni/2903068,https://id.biodiversity.org.au/taxon/apni/51440864,NA,Epilobium gunnianum,native -Eremophila deserti,Eremophila deserti,Eremophila deserti,NA,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,accepted,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461527,NA,Eremophila deserti,native -Eremophila oppositifolia,Eremophila oppositifolia,Eremophila oppositifolia,NA,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,accepted,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461527,NA,Eremophila oppositifolia,native +Eremophila deserti,Eremophila deserti,Eremophila deserti,NA,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,accepted,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51734003,NA,Eremophila deserti,native +Eremophila oppositifolia,Eremophila oppositifolia,Eremophila oppositifolia,NA,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,accepted,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51734003,NA,Eremophila oppositifolia,native Erigeron conyzoides,Erigeron conyzoides,Erigeron conyzoides,NA,Erigeron,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Erigeron conyzoides F.Muell.,https://id.biodiversity.org.au/node/apni/2913579,https://id.biodiversity.org.au/taxon/apni/51432118,https://id.biodiversity.org.au/name/apni/73195,Erigeron conyzoides,https://id.biodiversity.org.au/name/apni/239637,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/6407754,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Erigeron conyzoides,native Erythroxylum australe,Erythroxylum australe,Erythroxylum australe , Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied),Erythroxylum,Erythroxylaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Erythroxylum australe F.Muell.,https://id.biodiversity.org.au/node/apni/2912212,https://id.biodiversity.org.au/node/apni/2919669,https://id.biodiversity.org.au/name/apni/75959,Erythroxylum australe [alternative possible names: Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/node/apni/2893375,NA,Erythroxylum australe,native Escallonia bifida,Escallonia bifida,Escallonia bifida,NA,Escallonia,Escalloniaceae,species,APC,accepted,Magnoliidae,NSW (naturalised),Escallonia bifida Link & Otto,https://id.biodiversity.org.au/taxon/apni/51435441,https://id.biodiversity.org.au/taxon/apni/51435442,https://id.biodiversity.org.au/name/apni/116602,Escallonia bifida,https://id.biodiversity.org.au/name/apni/116602,accepted,https://id.biodiversity.org.au/taxon/apni/51435441,https://id.biodiversity.org.au/taxon/apni/51435443,NA,Escallonia bifida,naturalised -Eucalyptus badjensis,Eucalyptus badjensis,Eucalyptus badjensis,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,accepted,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus badjensis,native -Eucalyptus camphora,Eucalyptus camphora,Eucalyptus camphora,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/node/apni/2891665,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,accepted,https://id.biodiversity.org.au/node/apni/2891665,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus camphora,native -Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,accepted,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus dorrigoensis,native -Eucalyptus yangoura,Eucalyptus yangoura,Eucalyptus globoidea,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/853397,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus globoidea,native -Eucalyptus oblonga,Eucalyptus oblonga,Eucalyptus globoidea , Eucalyptus sparsifolia (pro parte taxonomic synonym),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea [alternative possible names: Eucalyptus sparsifolia (pro parte taxonomic synonym)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus globoidea,native -Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,NA,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,accepted,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51702983,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native -Eucalyptus miniata,Eucalyptus miniata,Eucalyptus miniata,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,accepted,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus miniata,native -Eucalyptus muelleriana,Eucalyptus muelleriana,Eucalyptus muelleriana,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,accepted,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus muelleriana,native -Eucalyptus nandewarica,Eucalyptus nandewarica,Eucalyptus nandewarica,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,accepted,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus nandewarica,native -Eucalyptus olida,Eucalyptus olida,Eucalyptus olida,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,accepted,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus olida,native -Eucalyptus pulverulenta,Eucalyptus pulverulenta,Eucalyptus pulverulenta,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,accepted,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus pulverulenta,native -Eucalyptus recurva,Eucalyptus recurva,Eucalyptus recurva,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,accepted,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus recurva,native -Eucalyptus rossii,Eucalyptus rossii,Eucalyptus rossii,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,accepted,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus rossii,native -Eucalyptus scias,Eucalyptus scias,Eucalyptus scias,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,accepted,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus scias,native -Eucalyptus tetrodonta,Eucalyptus tetrodonta,Eucalyptus tetrodonta,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,accepted,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus tetrodonta,native -Eucalyptus viminalis,Eucalyptus viminalis,Eucalyptus viminalis , Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus viminalis,native -Eucalyptus youmanii,Eucalyptus youmanii,Eucalyptus youmanii,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,accepted,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Eucalyptus youmanii,native +Eucalyptus badjensis,Eucalyptus badjensis,Eucalyptus badjensis,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,accepted,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus badjensis,native +Eucalyptus camphora,Eucalyptus camphora,Eucalyptus camphora,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/taxon/apni/51738742,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,accepted,https://id.biodiversity.org.au/taxon/apni/51738742,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus camphora,native +Eucalyptus chlorophylla,Eucalyptus chlorophylla,Eucalyptus chlorophylla,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus chlorophylla Brooker & Done,https://id.biodiversity.org.au/node/apni/2893400,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/112391,Eucalyptus chlorophylla,https://id.biodiversity.org.au/name/apni/112391,accepted,https://id.biodiversity.org.au/node/apni/2893400,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus chlorophylla,native +Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,accepted,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus dorrigoensis,native +Eucalyptus yangoura,Eucalyptus yangoura,Eucalyptus globoidea,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/853397,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus globoidea,native +Eucalyptus oblonga,Eucalyptus oblonga,Eucalyptus globoidea , Eucalyptus sparsifolia (pro parte taxonomic synonym),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea [alternative possible names: Eucalyptus sparsifolia (pro parte taxonomic synonym)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus globoidea,native +Eucalyptus grandis,Eucalyptus grandis,Eucalyptus grandis,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), Qld, NSW",Eucalyptus grandis W.Hill,https://id.biodiversity.org.au/taxon/apni/51439812,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/75405,Eucalyptus grandis,https://id.biodiversity.org.au/name/apni/75405,accepted,https://id.biodiversity.org.au/taxon/apni/51439812,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus grandis,native and naturalised +Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,NA,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,accepted,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51738744,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native +Eucalyptus miniata,Eucalyptus miniata,Eucalyptus miniata,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,accepted,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus miniata,native +Eucalyptus muelleriana,Eucalyptus muelleriana,Eucalyptus muelleriana,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,accepted,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus muelleriana,native +Eucalyptus nandewarica,Eucalyptus nandewarica,Eucalyptus nandewarica,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,accepted,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus nandewarica,native +Eucalyptus olida,Eucalyptus olida,Eucalyptus olida,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,accepted,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus olida,native +Eucalyptus patellaris,Eucalyptus patellaris,Eucalyptus patellaris,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NT,Eucalyptus patellaris F.Muell.,https://id.biodiversity.org.au/node/apni/2906207,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/87496,Eucalyptus patellaris,https://id.biodiversity.org.au/name/apni/87496,accepted,https://id.biodiversity.org.au/node/apni/2906207,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus patellaris,native +Eucalyptus pulverulenta,Eucalyptus pulverulenta,Eucalyptus pulverulenta,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,accepted,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus pulverulenta,native +Eucalyptus recurva,Eucalyptus recurva,Eucalyptus recurva,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,accepted,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus recurva,native +Eucalyptus rossii,Eucalyptus rossii,Eucalyptus rossii,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,accepted,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus rossii,native +Eucalyptus scias,Eucalyptus scias,Eucalyptus scias,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,accepted,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus scias,native +Eucalyptus tetrodonta,Eucalyptus tetrodonta,Eucalyptus tetrodonta,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,accepted,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus tetrodonta,native +Eucalyptus viminalis,Eucalyptus viminalis,Eucalyptus viminalis , Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus viminalis,native +Eucalyptus youmanii,Eucalyptus youmanii,Eucalyptus youmanii,NA,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,accepted,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Eucalyptus youmanii,native Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata var. queenslandica,NA,Euphorbia,Euphorbiaceae,variety,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Euphorbia inappendiculata var. queenslandica Domin,https://id.biodiversity.org.au/node/apni/7200245,https://id.biodiversity.org.au/taxon/apni/51435529,https://id.biodiversity.org.au/name/apni/92612,Euphorbia inappendiculata var. queenslandica,https://id.biodiversity.org.au/name/apni/92612,accepted,https://id.biodiversity.org.au/node/apni/7200245,https://id.biodiversity.org.au/taxon/apni/51442249,Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata,native Exocarpos homalocladus,Exocarpos homalocladus,Exocarpos homalocladus,NA,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,LHI,Exocarpos homalocladus C.Moore & F.Muell.,https://id.biodiversity.org.au/node/apni/2898548,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58158,Exocarpos homalocladus,https://id.biodiversity.org.au/name/apni/58158,accepted,https://id.biodiversity.org.au/node/apni/2898548,https://id.biodiversity.org.au/taxon/apni/51447154,NA,Exocarpos homalocladus,native Exocarpos sparteus,Exocarpos sparteus,Exocarpos sparteus,NA,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Exocarpos sparteus R.Br.,https://id.biodiversity.org.au/node/apni/2898676,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58330,Exocarpos sparteus,https://id.biodiversity.org.au/name/apni/58330,accepted,https://id.biodiversity.org.au/node/apni/2898676,https://id.biodiversity.org.au/taxon/apni/51447154,NA,Exocarpos sparteus,native Ficus henneana,Ficus henneana,Ficus henneana,NA,Ficus,Moraceae,species,APC,accepted,Magnoliidae,"NT, Qld, NSW",Ficus henneana Miq.,https://id.biodiversity.org.au/node/apni/2903067,https://id.biodiversity.org.au/taxon/apni/51439476,https://id.biodiversity.org.au/name/apni/91212,Ficus henneana,https://id.biodiversity.org.au/name/apni/91212,accepted,https://id.biodiversity.org.au/node/apni/2903067,https://id.biodiversity.org.au/taxon/apni/51439463,NA,Ficus henneana,native Freesia laxa,Freesia laxa,Freesia laxa,NA,Freesia,Iridaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), Qld (naturalised), NSW (naturalised), NI (naturalised), Vic (naturalised)",Freesia laxa (Thunb.) Goldblatt & J.C.Manning,https://id.biodiversity.org.au/node/apni/2886987,https://id.biodiversity.org.au/node/apni/2913899,https://id.biodiversity.org.au/name/apni/200132,Freesia laxa,https://id.biodiversity.org.au/name/apni/200132,accepted,https://id.biodiversity.org.au/node/apni/2886987,https://id.biodiversity.org.au/taxon/apni/51438006,NA,Freesia laxa,naturalised Freesia hybrid,Freesia hybrid,Freesia leichtlinii subsp. leichtlinii x Freesia leichtlinii subsp. alba,NA,Freesia,Iridaceae,subspecies,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Freesia leichtlinii Klatt subsp. leichtlinii x Freesia leichtlinii subsp. alba (G.L.Mey.) J.C.Manning & Goldblatt,https://id.biodiversity.org.au/node/apni/2908401,https://id.biodiversity.org.au/node/apni/2913899,https://id.biodiversity.org.au/name/apni/241787,Freesia leichtlinii subsp. leichtlinii x Freesia leichtlinii subsp. alba,https://id.biodiversity.org.au/name/apni/171901,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/953836,https://id.biodiversity.org.au/taxon/apni/51438006,Freesia leichtlinii subsp. leichtlinii x Freesia leichtlinii subsp. alba,Freesia leichtlinii,naturalised +Gardenia actinocarpa,Gardenia actinocarpa,Gardenia actinocarpa,NA,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia actinocarpa Puttock,https://id.biodiversity.org.au/taxon/apni/51293926,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/74954,Gardenia actinocarpa,https://id.biodiversity.org.au/name/apni/74954,accepted,https://id.biodiversity.org.au/taxon/apni/51293926,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Gardenia actinocarpa,native +Gardenia ovularis,Gardenia ovularis,Gardenia ovularis,NA,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia ovularis F.M.Bailey,https://id.biodiversity.org.au/node/apni/2895410,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/75259,Gardenia ovularis,https://id.biodiversity.org.au/name/apni/75259,accepted,https://id.biodiversity.org.au/node/apni/2895410,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Gardenia ovularis,native Geijera salicifolia,Geijera salicifolia,Geijera salicifolia,NA,Geijera,Rutaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Geijera salicifolia Schott,https://id.biodiversity.org.au/node/apni/2901807,https://id.biodiversity.org.au/node/apni/2905474,https://id.biodiversity.org.au/name/apni/101381,Geijera salicifolia,https://id.biodiversity.org.au/name/apni/101381,accepted,https://id.biodiversity.org.au/node/apni/2901807,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Geijera salicifolia,native Gentiana wingecarribiensis,Gentiana wingecarribiensis,Gentiana wingecarribiensis,NA,Gentiana,Gentianaceae,species,APC,accepted,Magnoliidae,NSW,Gentiana wingecarribiensis L.G.Adams,https://id.biodiversity.org.au/node/apni/2915610,https://id.biodiversity.org.au/taxon/apni/51436928,https://id.biodiversity.org.au/name/apni/80378,Gentiana wingecarribiensis,https://id.biodiversity.org.au/name/apni/80378,accepted,https://id.biodiversity.org.au/node/apni/2915610,https://id.biodiversity.org.au/taxon/apni/51436871,NA,Gentiana wingecarribiensis,native Gentianella barringtonensis,Gentianella barringtonensis,Gentianella barringtonensis,NA,Gentianella,Gentianaceae,species,APC,accepted,Magnoliidae,NSW,Gentianella barringtonensis (L.G.Adams) Glenny,https://id.biodiversity.org.au/taxon/apni/51301045,https://id.biodiversity.org.au/taxon/apni/51301038,https://id.biodiversity.org.au/name/apni/192277,Gentianella barringtonensis,https://id.biodiversity.org.au/name/apni/192277,accepted,https://id.biodiversity.org.au/taxon/apni/51301045,https://id.biodiversity.org.au/taxon/apni/51436871,NA,Gentianella barringtonensis,native @@ -122,11 +140,16 @@ Geranium obtusisepalum,Geranium obtusisepalum,Geranium obtusisepalum,NA,Geranium Geranium purpureum subsp. purpureum,Geranium purpureum subsp. purpureum,Geranium purpureum,NA,Geranium,Geraniaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised)",Geranium purpureum Vill.,https://id.biodiversity.org.au/node/apni/2919721,https://id.biodiversity.org.au/taxon/apni/51436946,https://id.biodiversity.org.au/name/apni/82353,Geranium purpureum,https://id.biodiversity.org.au/name/apni/82382,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/895632,https://id.biodiversity.org.au/taxon/apni/51436947,NA,Geranium purpureum,naturalised Gillbeea adenopetala,Gillbeea adenopetala,Gillbeea adenopetala,NA,Gillbeea,Cunoniaceae,species,APC,accepted,Magnoliidae,Qld,Gillbeea adenopetala F.Muell.,https://id.biodiversity.org.au/node/apni/2913815,https://id.biodiversity.org.au/node/apni/2918249,https://id.biodiversity.org.au/name/apni/98098,Gillbeea adenopetala,https://id.biodiversity.org.au/name/apni/98098,accepted,https://id.biodiversity.org.au/node/apni/2913815,https://id.biodiversity.org.au/taxon/apni/51434138,NA,Gillbeea adenopetala,native Glochidion hylandii,Glochidion hylandii,Glochidion hylandii,NA,Glochidion,Phyllanthaceae,species,APC,accepted,Magnoliidae,Qld,Glochidion hylandii Airy Shaw,https://id.biodiversity.org.au/node/apni/2889113,https://id.biodiversity.org.au/node/apni/8387508,https://id.biodiversity.org.au/name/apni/78303,Glochidion hylandii,https://id.biodiversity.org.au/name/apni/78303,accepted,https://id.biodiversity.org.au/node/apni/2889113,https://id.biodiversity.org.au/taxon/apni/51442162,NA,Glochidion hylandii,native -Gompholobium grandiflorum,Gompholobium grandiflorum,Gompholobium grandiflorum,NA,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65291,accepted,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Gompholobium grandiflorum,native +Gompholobium grandiflorum,Gompholobium grandiflorum,Gompholobium grandiflorum,NA,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65305,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/934224,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Gompholobium grandiflorum,native Goodenia varia,Goodenia varia,Goodenia varia,NA,Goodenia,Goodeniaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Goodenia varia R.Br.,https://id.biodiversity.org.au/node/apni/2910439,https://id.biodiversity.org.au/taxon/apni/51437012,https://id.biodiversity.org.au/name/apni/92079,Goodenia varia,https://id.biodiversity.org.au/name/apni/92079,accepted,https://id.biodiversity.org.au/node/apni/2910439,https://id.biodiversity.org.au/taxon/apni/51462931,NA,Goodenia varia,native -Gossia bidwillii,Gossia bidwillii,Gossia bidwillii,NA,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,accepted,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Gossia bidwillii,native -Grevillea scortechinii,Grevillea scortechinii,Grevillea scortechinii,NA,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51445337,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,accepted,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51614274,NA,Grevillea scortechinii,native -Hakea macraeana,Hakea macraeana,Hakea macraeana , Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51614274,NA,Hakea macraeana,native +Gossia bidwillii,Gossia bidwillii,Gossia bidwillii,NA,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,accepted,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Gossia bidwillii,native +Grevillea dimidiata,Grevillea dimidiata,Grevillea dimidiata,NA,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT",Grevillea dimidiata F.Muell.,https://id.biodiversity.org.au/node/apni/2901789,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/61434,Grevillea dimidiata,https://id.biodiversity.org.au/name/apni/61434,accepted,https://id.biodiversity.org.au/node/apni/2901789,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Grevillea dimidiata,native +Grevillea pteridifolia,Grevillea pteridifolia,Grevillea pteridifolia,NA,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Grevillea pteridifolia Knight,https://id.biodiversity.org.au/node/apni/2910744,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/111324,Grevillea pteridifolia,https://id.biodiversity.org.au/name/apni/111324,accepted,https://id.biodiversity.org.au/node/apni/2910744,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Grevillea pteridifolia,native +Grevillea robusta,Grevillea robusta,Grevillea robusta,NA,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW (native and naturalised), LHI (naturalised), NI (naturalised)",Grevillea robusta A.Cunn. ex R.Br.,https://id.biodiversity.org.au/node/apni/2918082,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/55137,Grevillea robusta,https://id.biodiversity.org.au/name/apni/55137,accepted,https://id.biodiversity.org.au/node/apni/2918082,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Grevillea robusta,native and naturalised +Grevillea scortechinii,Grevillea scortechinii,Grevillea scortechinii,NA,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,accepted,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Grevillea scortechinii,native +Hakea arborescens,Hakea arborescens,Hakea arborescens,NA,Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Hakea arborescens R.Br.,https://id.biodiversity.org.au/node/apni/2897149,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/76681,Hakea arborescens,https://id.biodiversity.org.au/name/apni/76681,accepted,https://id.biodiversity.org.au/node/apni/2897149,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Hakea arborescens,native +Hakea suberea,Hakea suberea,Hakea lorea subsp. lorea,NA,Hakea,Proteaceae,subspecies,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Hakea lorea (R.Br.) R.Br. subsp. lorea,https://id.biodiversity.org.au/node/apni/2918427,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/162920,Hakea lorea subsp. lorea,https://id.biodiversity.org.au/name/apni/99787,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/838725,https://id.biodiversity.org.au/taxon/apni/51732901,Hakea lorea subsp. lorea,Hakea lorea,native +Hakea macraeana,Hakea macraeana,Hakea macraeana , Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Hakea macraeana,native Harpullia rhyticarpa,Harpullia rhyticarpa,Harpullia rhyticarpa,NA,Harpullia,Sapindaceae,species,APC,accepted,Magnoliidae,Qld,Harpullia rhyticarpa C.T.White & W.D.Francis,https://id.biodiversity.org.au/node/apni/2910766,https://id.biodiversity.org.au/taxon/apni/51447330,https://id.biodiversity.org.au/name/apni/108928,Harpullia rhyticarpa,https://id.biodiversity.org.au/name/apni/108928,accepted,https://id.biodiversity.org.au/node/apni/2910766,https://id.biodiversity.org.au/taxon/apni/51447212,NA,Harpullia rhyticarpa,native Hemisteptia lyrata,Hemisteptia lyrata,Hemisteptia lyrata,NA,Hemisteptia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Hemisteptia lyrata (Bunge) Fisch. & C.A.Mey.,https://id.biodiversity.org.au/taxon/apni/51268530,https://id.biodiversity.org.au/taxon/apni/51268531,https://id.biodiversity.org.au/name/apni/230066,Hemisteptia lyrata,https://id.biodiversity.org.au/name/apni/230066,accepted,https://id.biodiversity.org.au/taxon/apni/51268530,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Hemisteptia lyrata,native Hernandia albiflora,Hernandia albiflora,Hernandia albiflora,NA,Hernandia,Hernandiaceae,species,APC,accepted,Magnoliidae,Qld,Hernandia albiflora (C.T.White) Kubitzki,https://id.biodiversity.org.au/node/apni/2911354,https://id.biodiversity.org.au/taxon/apni/51437691,https://id.biodiversity.org.au/name/apni/92773,Hernandia albiflora,https://id.biodiversity.org.au/name/apni/92773,accepted,https://id.biodiversity.org.au/node/apni/2911354,https://id.biodiversity.org.au/taxon/apni/51437692,NA,Hernandia albiflora,native @@ -145,15 +168,15 @@ Ixora biflora,Ixora biflora,Ixora biflora,NA,Ixora,Rubiaceae,species,APC,accepte Juncus acutus subsp. acutus,Juncus acutus subsp. acutus,Juncus acutus subsp. acutus,NA,Juncus,Juncaceae,subspecies,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised)",Juncus acutus L. subsp. acutus,https://id.biodiversity.org.au/node/apni/2887983,https://id.biodiversity.org.au/taxon/apni/51438170,https://id.biodiversity.org.au/name/apni/182490,Juncus acutus subsp. acutus,https://id.biodiversity.org.au/name/apni/182490,accepted,https://id.biodiversity.org.au/node/apni/2887983,https://id.biodiversity.org.au/taxon/apni/51438171,Juncus acutus subsp. acutus,Juncus acutus,naturalised Juncus kraussii,Juncus kraussii,Juncus kraussii,NA,Juncus,Juncaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic, Tas",Juncus kraussii Hochst.,https://id.biodiversity.org.au/node/apni/2900900,https://id.biodiversity.org.au/taxon/apni/51438170,https://id.biodiversity.org.au/name/apni/55859,Juncus kraussii,https://id.biodiversity.org.au/name/apni/55859,accepted,https://id.biodiversity.org.au/node/apni/2900900,https://id.biodiversity.org.au/taxon/apni/51438171,NA,Juncus kraussii,native Lantana montevidensis,Lantana montevidensis,Lantana montevidensis,NA,Lantana,Verbenaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), Qld (naturalised), NSW (naturalised), NI (doubtfully naturalised)",Lantana montevidensis (Spreng.) Briq.,https://id.biodiversity.org.au/node/apni/2894994,https://id.biodiversity.org.au/taxon/apni/51448661,https://id.biodiversity.org.au/name/apni/70044,Lantana montevidensis,https://id.biodiversity.org.au/name/apni/70044,accepted,https://id.biodiversity.org.au/node/apni/2894994,https://id.biodiversity.org.au/taxon/apni/51448662,NA,Lantana montevidensis,naturalised -Lasianthus strigosus,Lasianthus strigosus,Lasianthus chlorocarpus,NA,Lasianthus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Lasianthus chlorocarpus K.Schum.,https://id.biodiversity.org.au/node/apni/7839740,https://id.biodiversity.org.au/node/apni/8136656,https://id.biodiversity.org.au/name/apni/219373,Lasianthus chlorocarpus,https://id.biodiversity.org.au/name/apni/71294,misapplied,https://id.biodiversity.org.au/instance/apni/7839725,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Lasianthus chlorocarpus,native +Lasianthus strigosus,Lasianthus strigosus,Lasianthus chlorocarpus,NA,Lasianthus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Lasianthus chlorocarpus K.Schum.,https://id.biodiversity.org.au/node/apni/7839740,https://id.biodiversity.org.au/node/apni/8136656,https://id.biodiversity.org.au/name/apni/219373,Lasianthus chlorocarpus,https://id.biodiversity.org.au/name/apni/71294,misapplied,https://id.biodiversity.org.au/instance/apni/7839722,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Lasianthus chlorocarpus,native Lepidium africanum,Lepidium africanum,Lepidium africanum,NA,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), LHI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Lepidium africanum (Burm.f.) DC.,https://id.biodiversity.org.au/node/apni/2887818,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/68961,Lepidium africanum,https://id.biodiversity.org.au/name/apni/68961,accepted,https://id.biodiversity.org.au/node/apni/2887818,https://id.biodiversity.org.au/taxon/apni/51612687,NA,Lepidium africanum,naturalised Lepidium foliosum,Lepidium foliosum,Lepidium foliosum,NA,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Lepidium foliosum Desv.,https://id.biodiversity.org.au/node/apni/2908453,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/69389,Lepidium foliosum,https://id.biodiversity.org.au/name/apni/69389,accepted,https://id.biodiversity.org.au/node/apni/2908453,https://id.biodiversity.org.au/taxon/apni/51612687,NA,Lepidium foliosum,native Lepidium oxytrichum,Lepidium oxytrichum,Lepidium oxytrichum,NA,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Lepidium oxytrichum Sprague,https://id.biodiversity.org.au/node/apni/2915883,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/84027,Lepidium oxytrichum,https://id.biodiversity.org.au/name/apni/84027,accepted,https://id.biodiversity.org.au/node/apni/2915883,https://id.biodiversity.org.au/taxon/apni/51612687,NA,Lepidium oxytrichum,native Lepidosperma gladiatum,Lepidosperma gladiatum,Lepidosperma gladiatum,NA,Lepidosperma,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Lepidosperma gladiatum Labill.,https://id.biodiversity.org.au/node/apni/2896726,https://id.biodiversity.org.au/taxon/apni/51434499,https://id.biodiversity.org.au/name/apni/85937,Lepidosperma gladiatum,https://id.biodiversity.org.au/name/apni/85937,accepted,https://id.biodiversity.org.au/node/apni/2896726,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Lepidosperma gladiatum,native Leptomeria drupacea,Leptomeria drupacea,Leptomeria drupacea,NA,Leptomeria,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Leptomeria drupacea (Labill.) Druce,https://id.biodiversity.org.au/node/apni/2892780,https://id.biodiversity.org.au/node/apni/2897704,https://id.biodiversity.org.au/name/apni/61625,Leptomeria drupacea,https://id.biodiversity.org.au/name/apni/61625,accepted,https://id.biodiversity.org.au/node/apni/2892780,https://id.biodiversity.org.au/taxon/apni/51447154,NA,Leptomeria drupacea,native -Leptospermum continentale,Leptospermum continentale,Leptospermum continentale,NA,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,accepted,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Leptospermum continentale,native -Leptospermum obovatum,Leptospermum obovatum,Leptospermum obovatum,NA,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,accepted,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Leptospermum obovatum,native -Leucopogon amplexicaulis,Leucopogon amplexicaulis,Leucopogon amplexicaulis,NA,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,accepted,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51436079,NA,Leucopogon amplexicaulis,native +Leptospermum continentale,Leptospermum continentale,Leptospermum continentale,NA,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,accepted,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Leptospermum continentale,native +Leptospermum obovatum,Leptospermum obovatum,Leptospermum obovatum,NA,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,accepted,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Leptospermum obovatum,native +Leucopogon amplexicaulis,Leucopogon amplexicaulis,Leucopogon amplexicaulis,NA,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,accepted,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51738121,NA,Leucopogon amplexicaulis,native Litsea leefeana,Litsea leefeana,Litsea leefeana,NA,Litsea,Lauraceae,species,APC,accepted,Magnoliidae,Qld,Litsea leefeana (F.Muell.) Merr.,https://id.biodiversity.org.au/node/apni/2921063,https://id.biodiversity.org.au/taxon/apni/51438430,https://id.biodiversity.org.au/name/apni/81094,Litsea leefeana,https://id.biodiversity.org.au/name/apni/81094,accepted,https://id.biodiversity.org.au/node/apni/2921063,https://id.biodiversity.org.au/taxon/apni/51438397,NA,Litsea leefeana,native Lobelia pedunculata,Lobelia pedunculata,Lobelia pedunculata,NA,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Lobelia pedunculata R.Br.,https://id.biodiversity.org.au/node/apni/2901444,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/106999,Lobelia pedunculata,https://id.biodiversity.org.au/name/apni/106999,accepted,https://id.biodiversity.org.au/node/apni/2901444,https://id.biodiversity.org.au/taxon/apni/51432853,NA,Lobelia pedunculata,native Lobelia trigonocaulis,Lobelia trigonocaulis,Lobelia trigonocaulis,NA,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Lobelia trigonocaulis F.Muell.,https://id.biodiversity.org.au/node/apni/2901863,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/107808,Lobelia trigonocaulis,https://id.biodiversity.org.au/name/apni/107808,accepted,https://id.biodiversity.org.au/node/apni/2901863,https://id.biodiversity.org.au/taxon/apni/51432853,NA,Lobelia trigonocaulis,native @@ -165,11 +188,11 @@ Mallotus mollissimus,Mallotus mollissimus,Mallotus mollissimus,NA,Mallotus,Eupho Medicago orbicularis,Medicago orbicularis,Medicago orbicularis,NA,Medicago,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (formerly naturalised)",Medicago orbicularis (L.) Bartal.,https://id.biodiversity.org.au/node/apni/2901771,https://id.biodiversity.org.au/taxon/apni/51285690,https://id.biodiversity.org.au/name/apni/59568,Medicago orbicularis,https://id.biodiversity.org.au/name/apni/59568,accepted,https://id.biodiversity.org.au/node/apni/2901771,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Medicago orbicularis,naturalised Medicosma sessiliflora,Medicosma sessiliflora,Medicosma sessiliflora,NA,Medicosma,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Medicosma sessiliflora (C.T.White) T.G.Hartley,https://id.biodiversity.org.au/node/apni/2914896,https://id.biodiversity.org.au/taxon/apni/51446918,https://id.biodiversity.org.au/name/apni/73658,Medicosma sessiliflora,https://id.biodiversity.org.au/name/apni/73658,accepted,https://id.biodiversity.org.au/node/apni/2914896,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Medicosma sessiliflora,native Melastoma cyanoides,Melastoma cyanoides,Melastoma cyanoides,NA,Melastoma,Melastomataceae,species,APC,accepted,Magnoliidae,Qld,Melastoma cyanoides Sm.,https://id.biodiversity.org.au/node/apni/2895184,https://id.biodiversity.org.au/taxon/apni/51439399,https://id.biodiversity.org.au/name/apni/172752,Melastoma cyanoides,https://id.biodiversity.org.au/name/apni/172752,accepted,https://id.biodiversity.org.au/node/apni/2895184,https://id.biodiversity.org.au/taxon/apni/51439392,NA,Melastoma cyanoides,native -Melichrus procumbens,Melichrus procumbens,Melichrus procumbens,NA,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,accepted,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/taxon/apni/51436079,NA,Melichrus procumbens,native +Melichrus procumbens,Melichrus procumbens,Melichrus procumbens,NA,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,accepted,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/taxon/apni/51738121,NA,Melichrus procumbens,native Melicope elleryana,Melicope elleryana,Melicope elleryana,NA,Melicope,Rutaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Melicope elleryana (F.Muell.) T.G.Hartley,https://id.biodiversity.org.au/node/apni/2913641,https://id.biodiversity.org.au/node/apni/2918609,https://id.biodiversity.org.au/name/apni/118560,Melicope elleryana,https://id.biodiversity.org.au/name/apni/118560,accepted,https://id.biodiversity.org.au/node/apni/2913641,https://id.biodiversity.org.au/taxon/apni/51461748,NA,Melicope elleryana,native Mischocarpus australis,Mischocarpus australis,Mischocarpus australis,NA,Mischocarpus,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Mischocarpus australis S.T.Reynolds,https://id.biodiversity.org.au/node/apni/2893744,https://id.biodiversity.org.au/taxon/apni/51389373,https://id.biodiversity.org.au/name/apni/115917,Mischocarpus australis,https://id.biodiversity.org.au/name/apni/115917,accepted,https://id.biodiversity.org.au/node/apni/2893744,https://id.biodiversity.org.au/taxon/apni/51447212,NA,Mischocarpus australis,native Muehlenbeckia adpressa,Muehlenbeckia adpressa,Muehlenbeckia adpressa,NA,Muehlenbeckia,Polygonaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Muehlenbeckia adpressa (Labill.) Meisn.,https://id.biodiversity.org.au/node/apni/4750977,https://id.biodiversity.org.au/taxon/apni/51291654,https://id.biodiversity.org.au/name/apni/107852,Muehlenbeckia adpressa,https://id.biodiversity.org.au/name/apni/107852,accepted,https://id.biodiversity.org.au/node/apni/4750977,https://id.biodiversity.org.au/taxon/apni/51444856,NA,Muehlenbeckia adpressa,native -Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,NA,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,accepted,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51461527,Myoporum boninense subsp. australe,Myoporum boninense,native +Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,NA,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,accepted,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51734003,Myoporum boninense subsp. australe,Myoporum boninense,native Myristica insipida,Myristica insipida,Myristica insipida,NA,Myristica,Myristicaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Myristica insipida R.Br.,https://id.biodiversity.org.au/node/apni/2902429,https://id.biodiversity.org.au/node/apni/2895962,https://id.biodiversity.org.au/name/apni/86064,Myristica insipida,https://id.biodiversity.org.au/name/apni/86064,accepted,https://id.biodiversity.org.au/node/apni/2902429,https://id.biodiversity.org.au/node/apni/2903136,NA,Myristica insipida,native Neolitsea dealbata,Neolitsea dealbata,Neolitsea dealbata,NA,Neolitsea,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Neolitsea dealbata (R.Br.) Merr.,https://id.biodiversity.org.au/node/apni/2910025,https://id.biodiversity.org.au/node/apni/2914447,https://id.biodiversity.org.au/name/apni/79589,Neolitsea dealbata,https://id.biodiversity.org.au/name/apni/79589,accepted,https://id.biodiversity.org.au/node/apni/2910025,https://id.biodiversity.org.au/taxon/apni/51438397,NA,Neolitsea dealbata,native Nicotiana glauca,Nicotiana glauca,Nicotiana glauca,NA,Nicotiana,Solanaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised)",Nicotiana glauca Graham,https://id.biodiversity.org.au/node/apni/2887606,https://id.biodiversity.org.au/taxon/apni/51447689,https://id.biodiversity.org.au/name/apni/77368,Nicotiana glauca,https://id.biodiversity.org.au/name/apni/77368,accepted,https://id.biodiversity.org.au/node/apni/2887606,https://id.biodiversity.org.au/taxon/apni/51447684,NA,Nicotiana glauca,naturalised @@ -177,8 +200,9 @@ Nicotiana goodspeedii,Nicotiana goodspeedii,Nicotiana goodspeedii,NA,Nicotiana,S Oxalis corniculata,Oxalis corniculata,Oxalis corniculata,NA,Oxalis,Oxalidaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), ChI (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Oxalis corniculata L.,https://id.biodiversity.org.au/node/apni/2909588,https://id.biodiversity.org.au/taxon/apni/51442068,https://id.biodiversity.org.au/name/apni/89460,Oxalis corniculata,https://id.biodiversity.org.au/name/apni/89460,accepted,https://id.biodiversity.org.au/node/apni/2909588,https://id.biodiversity.org.au/taxon/apni/51442069,NA,Oxalis corniculata,naturalised Pandorea pandorana subsp. austrocaledonica,Pandorea pandorana subsp. austrocaledonica,Pandorea pandorana,NA,Pandorea,Bignoniaceae,species,APC,accepted,Magnoliidae,"WA, SA (native and naturalised), Qld, NSW, LHI, NI (presumed extinct), Vic (native and naturalised), Tas",Pandorea pandorana (Andrews) Steenis,https://id.biodiversity.org.au/taxon/apni/51269199,https://id.biodiversity.org.au/taxon/apni/51269200,https://id.biodiversity.org.au/name/apni/91117,Pandorea pandorana,https://id.biodiversity.org.au/name/apni/141640,misapplied,https://id.biodiversity.org.au/instance/apni/51269194,https://id.biodiversity.org.au/taxon/apni/51439229,NA,Pandorea pandorana,native and naturalised Paraserianthes lophantha,Paraserianthes lophantha,Paraserianthes lophantha,NA,Paraserianthes,Fabaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), SA (naturalised), NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Paraserianthes lophantha (Willd.) I.C.Nielsen,https://id.biodiversity.org.au/taxon/apni/51286820,https://id.biodiversity.org.au/taxon/apni/51286819,https://id.biodiversity.org.au/name/apni/116755,Paraserianthes lophantha,https://id.biodiversity.org.au/name/apni/116755,accepted,https://id.biodiversity.org.au/taxon/apni/51286820,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Paraserianthes lophantha,native and naturalised -Parentucellia latifolia,Parentucellia latifolia,Parentucellia latifolia,NA,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,accepted,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291037,NA,Parentucellia latifolia,naturalised +Parentucellia latifolia,Parentucellia latifolia,Parentucellia latifolia,NA,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,accepted,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51734010,NA,Parentucellia latifolia,naturalised Hypoxis glabella var. glabella,Hypoxis glabella var. glabella,Pauridia glabella var. glabella,NA,Pauridia,Hypoxidaceae,variety,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Pauridia glabella (R.Br.) Snijman & Kocyan var. glabella,https://id.biodiversity.org.au/node/apni/7455351,https://id.biodiversity.org.au/taxon/apni/51437983,https://id.biodiversity.org.au/name/apni/244102,Pauridia glabella var. glabella,https://id.biodiversity.org.au/name/apni/81442,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/7455341,https://id.biodiversity.org.au/taxon/apni/51437984,Pauridia glabella var. glabella,Pauridia glabella,native +Persoonia falcata,Persoonia falcata,Persoonia falcata,NA,Persoonia,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Persoonia falcata R.Br.,https://id.biodiversity.org.au/node/apni/2904820,https://id.biodiversity.org.au/taxon/apni/51429033,https://id.biodiversity.org.au/name/apni/112478,Persoonia falcata,https://id.biodiversity.org.au/name/apni/112478,accepted,https://id.biodiversity.org.au/node/apni/2904820,https://id.biodiversity.org.au/taxon/apni/51732901,NA,Persoonia falcata,native Phlegmatospermum cochlearinum,Phlegmatospermum cochlearinum,Phlegmatospermum cochlearinum,NA,Phlegmatospermum,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Phlegmatospermum cochlearinum (F.Muell.) O.E.Schulz,https://id.biodiversity.org.au/node/apni/2915554,https://id.biodiversity.org.au/node/apni/2897988,https://id.biodiversity.org.au/name/apni/81861,Phlegmatospermum cochlearinum,https://id.biodiversity.org.au/name/apni/81861,accepted,https://id.biodiversity.org.au/node/apni/2915554,https://id.biodiversity.org.au/taxon/apni/51612687,NA,Phlegmatospermum cochlearinum,native Phyla nodiflora,Phyla nodiflora,Phyla nodiflora,NA,Phyla,Verbenaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), CoI (naturalised), NT, Qld, NSW (naturalised)",Phyla nodiflora (L.) Greene,https://id.biodiversity.org.au/node/apni/2907374,https://id.biodiversity.org.au/node/apni/2892182,https://id.biodiversity.org.au/name/apni/74617,Phyla nodiflora,https://id.biodiversity.org.au/name/apni/74617,accepted,https://id.biodiversity.org.au/node/apni/2907374,https://id.biodiversity.org.au/taxon/apni/51448662,NA,Phyla nodiflora,native and naturalised Picris barbarorum,Picris barbarorum,Picris barbarorum,NA,Picris,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic (presumed extinct)",Picris barbarorum Lindl.,https://id.biodiversity.org.au/node/apni/2916052,https://id.biodiversity.org.au/node/apni/7890078,https://id.biodiversity.org.au/name/apni/110349,Picris barbarorum,https://id.biodiversity.org.au/name/apni/110349,accepted,https://id.biodiversity.org.au/node/apni/2916052,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Picris barbarorum,native @@ -188,25 +212,25 @@ Pisum sativum var. arvense,Pisum sativum var. arvense,Pisum sativum var. arvense Pittosporum erioloma,Pittosporum erioloma,Pittosporum erioloma,NA,Pittosporum,Pittosporaceae,species,APC,accepted,Magnoliidae,LHI,Pittosporum erioloma C.Moore & F.Muell.,https://id.biodiversity.org.au/node/apni/2891204,https://id.biodiversity.org.au/taxon/apni/51442349,https://id.biodiversity.org.au/name/apni/99523,Pittosporum erioloma,https://id.biodiversity.org.au/name/apni/99523,accepted,https://id.biodiversity.org.au/node/apni/2891204,https://id.biodiversity.org.au/taxon/apni/51442315,NA,Pittosporum erioloma,native Pittosporum rubiginosum,Pittosporum rubiginosum,Pittosporum rubiginosum,NA,Pittosporum,Pittosporaceae,species,APC,accepted,Magnoliidae,Qld,Pittosporum rubiginosum A.Cunn.,https://id.biodiversity.org.au/node/apni/2887772,https://id.biodiversity.org.au/taxon/apni/51442349,https://id.biodiversity.org.au/name/apni/100119,Pittosporum rubiginosum,https://id.biodiversity.org.au/name/apni/100119,accepted,https://id.biodiversity.org.au/node/apni/2887772,https://id.biodiversity.org.au/taxon/apni/51442315,NA,Pittosporum rubiginosum,native Plantago turrifera,Plantago turrifera,Plantago turrifera,NA,Plantago,Plantaginaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW (native and naturalised), Vic","Plantago turrifera B.G.Briggs, Carolin & Pulley",https://id.biodiversity.org.au/node/apni/2895983,https://id.biodiversity.org.au/node/apni/7745425,https://id.biodiversity.org.au/name/apni/79077,Plantago turrifera,https://id.biodiversity.org.au/name/apni/79077,accepted,https://id.biodiversity.org.au/node/apni/2895983,https://id.biodiversity.org.au/taxon/apni/51699383,NA,Plantago turrifera,native and naturalised -Haplostichanthus sp Coop. Ck,Haplostichanthus submontanus,Polyalthia submontana,NA,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51613975,https://id.biodiversity.org.au/taxon/apni/51613976,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/51430810,https://id.biodiversity.org.au/taxon/apni/51613977,NA,Polyalthia submontana,native +Haplostichanthus sp Coop. Ck,Haplostichanthus submontanus,Polyalthia submontana,NA,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51735993,https://id.biodiversity.org.au/taxon/apni/51735989,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/51430810,https://id.biodiversity.org.au/taxon/apni/51735960,NA,Polyalthia submontana,native Polycarpon tetraphyllum,Polycarpon tetraphyllum,Polycarpon tetraphyllum,NA,Polycarpon,Caryophyllaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), LHI (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Polycarpon tetraphyllum (L.) L.,https://id.biodiversity.org.au/taxon/apni/51270276,https://id.biodiversity.org.au/taxon/apni/51270277,https://id.biodiversity.org.au/name/apni/107982,Polycarpon tetraphyllum,https://id.biodiversity.org.au/name/apni/107982,accepted,https://id.biodiversity.org.au/taxon/apni/51270276,https://id.biodiversity.org.au/taxon/apni/51432987,NA,Polycarpon tetraphyllum,naturalised -Polyscias australiana,Polyscias australiana,Polyscias australiana,NA,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51292784,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/941828,https://id.biodiversity.org.au/taxon/apni/51632289,NA,Polyscias australiana,native +Polyscias australiana,Polyscias australiana,Polyscias australiana,NA,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51737050,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,taxonomic synonym,https://id.biodiversity.org.au/instance/apni/941828,https://id.biodiversity.org.au/taxon/apni/51736765,NA,Polyscias australiana,native Potamogeton australiensis,Potamogeton australiensis,Potamogeton australiensis,NA,Potamogeton,Potamogetonaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Potamogeton australiensis A.Benn.,https://id.biodiversity.org.au/node/apni/7808489,https://id.biodiversity.org.au/node/apni/8770682,https://id.biodiversity.org.au/name/apni/65827,Potamogeton australiensis,https://id.biodiversity.org.au/name/apni/65827,accepted,https://id.biodiversity.org.au/node/apni/7808489,https://id.biodiversity.org.au/taxon/apni/51353530,NA,Potamogeton australiensis,native Psoralea pinnata,Psoralea pinnata,Psoralea pinnata,NA,Psoralea,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Psoralea pinnata L.,https://id.biodiversity.org.au/node/apni/2887023,https://id.biodiversity.org.au/node/apni/8771698,https://id.biodiversity.org.au/name/apni/88820,Psoralea pinnata,https://id.biodiversity.org.au/name/apni/88820,accepted,https://id.biodiversity.org.au/node/apni/2887023,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Psoralea pinnata,naturalised Psychotria dallachiana,Psychotria dallachiana,Psychotria dallachiana,NA,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria dallachiana Benth.,https://id.biodiversity.org.au/node/apni/2890013,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/89074,Psychotria dallachiana,https://id.biodiversity.org.au/name/apni/89074,accepted,https://id.biodiversity.org.au/node/apni/2890013,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Psychotria dallachiana,native Psychotria sp Utchee Creek,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),Psychotria sp. Utchee Creek (H.Flecker NQNC5313),NA,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria sp. Utchee Creek (H.Flecker NQNC5313) Qld Herbarium,https://id.biodiversity.org.au/taxon/apni/51446727,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/218829,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),https://id.biodiversity.org.au/name/apni/218829,accepted,https://id.biodiversity.org.au/taxon/apni/51446727,https://id.biodiversity.org.au/taxon/apni/51446612,NA,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),native Pultenaea ferruginea,Pultenaea ferruginea,Pultenaea ferruginea,NA,Pultenaea,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Pultenaea ferruginea Rudge,https://id.biodiversity.org.au/node/apni/2906803,https://id.biodiversity.org.au/taxon/apni/51436286,https://id.biodiversity.org.au/name/apni/59158,Pultenaea ferruginea,https://id.biodiversity.org.au/name/apni/59158,accepted,https://id.biodiversity.org.au/node/apni/2906803,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Pultenaea ferruginea,native -Rhodamnia argentea,Rhodamnia argentea,Rhodamnia argentea,NA,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,accepted,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Rhodamnia argentea,native -Rhodomyrtus trineura,Rhodomyrtus trineura,Rhodomyrtus trineura,NA,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,accepted,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Rhodomyrtus trineura,native +Rhodamnia argentea,Rhodamnia argentea,Rhodamnia argentea,NA,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,accepted,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Rhodamnia argentea,native +Rhodomyrtus trineura,Rhodomyrtus trineura,Rhodomyrtus trineura,NA,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,accepted,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Rhodomyrtus trineura,native Rockinghamia angustifolia,Rockinghamia angustifolia,Rockinghamia angustifolia,NA,Rockinghamia,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Rockinghamia angustifolia (Benth.) Airy Shaw,https://id.biodiversity.org.au/node/apni/2921179,https://id.biodiversity.org.au/node/apni/2892697,https://id.biodiversity.org.au/name/apni/61487,Rockinghamia angustifolia,https://id.biodiversity.org.au/name/apni/61487,accepted,https://id.biodiversity.org.au/node/apni/2921179,https://id.biodiversity.org.au/taxon/apni/51442249,NA,Rockinghamia angustifolia,native Rorippa gigantea,Rorippa gigantea,Rorippa gigantea,NA,Rorippa,Brassicaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rorippa gigantea (Hook.) Garn.-Jones,https://id.biodiversity.org.au/node/apni/2920330,https://id.biodiversity.org.au/node/apni/8442201,https://id.biodiversity.org.au/name/apni/75950,Rorippa gigantea,https://id.biodiversity.org.au/name/apni/75950,accepted,https://id.biodiversity.org.au/node/apni/2920330,https://id.biodiversity.org.au/taxon/apni/51612687,NA,Rorippa gigantea,native -Rubus parvifolius,Rubus parvifolius,Rubus parvifolius,NA,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,accepted,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446278,NA,Rubus parvifolius,native -Salix alba,Salix alba,Salix alba , NA,Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: NA],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51436847,NA,Salix alba,naturalised +Rubus parvifolius,Rubus parvifolius,Rubus parvifolius,NA,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,accepted,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51737985,NA,Rubus parvifolius,native +Salix alba,Salix alba,Salix alba , Salix x fragilis nothovar. fragilis (pro parte misapplied),Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: Salix x fragilis nothovar. fragilis (pro parte misapplied)],NA,NA,NA,https://id.biodiversity.org.au/taxon/apni/51436847,NA,Salix alba,naturalised Quassia baileyana,Quassia baileyana,Samadera baileyana,NA,Samadera,Simaroubaceae,species,APC,accepted,Magnoliidae,Qld,Samadera baileyana Oliv.,https://id.biodiversity.org.au/node/apni/2891526,https://id.biodiversity.org.au/node/apni/2900441,https://id.biodiversity.org.au/name/apni/60763,Samadera baileyana,https://id.biodiversity.org.au/name/apni/70084,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/897542,https://id.biodiversity.org.au/taxon/apni/51316490,NA,Samadera baileyana,native Schenkia australis,Schenkia australis,Schenkia australis,NA,Schenkia,Gentianaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic, Tas",Schenkia australis (R.Br.) G.Mans.,https://id.biodiversity.org.au/taxon/apni/51436897,https://id.biodiversity.org.au/taxon/apni/51436898,https://id.biodiversity.org.au/name/apni/200895,Schenkia australis,https://id.biodiversity.org.au/name/apni/200895,accepted,https://id.biodiversity.org.au/taxon/apni/51436897,https://id.biodiversity.org.au/taxon/apni/51436871,NA,Schenkia australis,native Schoenus apogon,Schoenus apogon,Schoenus apogon,NA,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Schoenus apogon Roem. & Schult.,https://id.biodiversity.org.au/node/apni/2908439,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109452,Schoenus apogon,https://id.biodiversity.org.au/name/apni/109452,accepted,https://id.biodiversity.org.au/node/apni/2908439,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Schoenus apogon,native Schoenus brevifolius,Schoenus brevifolius,Schoenus brevifolius,NA,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Schoenus brevifolius R.Br.,https://id.biodiversity.org.au/node/apni/2904000,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109778,Schoenus brevifolius,https://id.biodiversity.org.au/name/apni/109778,accepted,https://id.biodiversity.org.au/node/apni/2904000,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Schoenus brevifolius,native -Schoenus lepidosperma,Schoenus lepidosperma,Schoenus lepidosperma,NA,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/243667,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/947513,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Schoenus lepidosperma,native +Schoenus lepidosperma,Schoenus lepidosperma,Schoenus lepidosperma,NA,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/141376,accepted,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Schoenus lepidosperma,native Schoenus vaginatus,Schoenus vaginatus,Schoenus vaginatus,NA,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Schoenus vaginatus F.Muell. ex Benth.,https://id.biodiversity.org.au/node/apni/2896591,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/113246,Schoenus vaginatus,https://id.biodiversity.org.au/name/apni/113246,accepted,https://id.biodiversity.org.au/node/apni/2896591,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Schoenus vaginatus,native Scleria rugosa,Scleria rugosa,Scleria rugosa,NA,Scleria,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Scleria rugosa R.Br.,https://id.biodiversity.org.au/node/apni/2892143,https://id.biodiversity.org.au/taxon/apni/51434752,https://id.biodiversity.org.au/name/apni/64346,Scleria rugosa,https://id.biodiversity.org.au/name/apni/64346,accepted,https://id.biodiversity.org.au/node/apni/2892143,https://id.biodiversity.org.au/taxon/apni/51460154,NA,Scleria rugosa,native Senecio longipilus,Senecio longipilus,Senecio longipilus,NA,Senecio,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Tas",Senecio longipilus I.Thomps.,https://id.biodiversity.org.au/node/apni/2907653,https://id.biodiversity.org.au/taxon/apni/51614245,https://id.biodiversity.org.au/name/apni/189666,Senecio longipilus,https://id.biodiversity.org.au/name/apni/189666,accepted,https://id.biodiversity.org.au/node/apni/2907653,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Senecio longipilus,native @@ -218,16 +242,18 @@ Sparaxis bulbifera,Sparaxis bulbifera,Sparaxis bulbifera,NA,Sparaxis,Iridaceae,s Spergularia diandra,Spergularia diandra,Spergularia diandra,NA,Spergularia,Caryophyllaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised)",Spergularia diandra (Guss.) Heldr.,https://id.biodiversity.org.au/node/apni/2886696,https://id.biodiversity.org.au/taxon/apni/51295406,https://id.biodiversity.org.au/name/apni/83464,Spergularia diandra,https://id.biodiversity.org.au/name/apni/83464,accepted,https://id.biodiversity.org.au/node/apni/2886696,https://id.biodiversity.org.au/taxon/apni/51432987,NA,Spergularia diandra,naturalised Sphaeromorphaea littoralis,Sphaeromorphaea littoralis,Sphaeromorphaea littoralis,NA,Sphaeromorphaea,Asteraceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Sphaeromorphaea littoralis (Retz.) A.R.Bean,https://id.biodiversity.org.au/node/apni/7069871,https://id.biodiversity.org.au/node/apni/7071683,https://id.biodiversity.org.au/name/apni/246779,Sphaeromorphaea littoralis,https://id.biodiversity.org.au/name/apni/246779,accepted,https://id.biodiversity.org.au/node/apni/7069871,https://id.biodiversity.org.au/taxon/apni/51695393,NA,Sphaeromorphaea littoralis,native Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia subsp. angustifolia,NA,Stellaria,Caryophyllaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Stellaria angustifolia Hook. subsp. angustifolia,https://id.biodiversity.org.au/node/apni/2890520,https://id.biodiversity.org.au/taxon/apni/51433015,https://id.biodiversity.org.au/name/apni/240421,Stellaria angustifolia subsp. angustifolia,https://id.biodiversity.org.au/name/apni/240421,accepted,https://id.biodiversity.org.au/node/apni/2890520,https://id.biodiversity.org.au/taxon/apni/51432987,Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia,native -Styphelia viridis,Styphelia viridis,Styphelia viridis,NA,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,accepted,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51436079,NA,Styphelia viridis,native +Styphelia viridis,Styphelia viridis,Styphelia viridis,NA,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,accepted,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51738121,NA,Styphelia viridis,native Swainsona cadellii,Swainsona cadellii,Swainsona cadellii,NA,Swainsona,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Swainsona cadellii F.Muell. ex C.Moore,https://id.biodiversity.org.au/node/apni/2904099,https://id.biodiversity.org.au/taxon/apni/51436313,https://id.biodiversity.org.au/name/apni/76870,Swainsona cadellii,https://id.biodiversity.org.au/name/apni/76870,accepted,https://id.biodiversity.org.au/node/apni/2904099,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Swainsona cadellii,native -Acmena graveolens,Acmena graveolens,Syzygium graveolens,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/891710,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Syzygium graveolens,native -Syzygium gustavioides,Syzygium gustavioides,Syzygium gustavioides,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,accepted,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Syzygium gustavioides,native -Syzygium sayeri,Syzygium sayeri,Syzygium sayeri,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,accepted,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51702983,NA,Syzygium sayeri,native +Acmena graveolens,Acmena graveolens,Syzygium graveolens,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/891710,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Syzygium graveolens,native +Syzygium gustavioides,Syzygium gustavioides,Syzygium gustavioides,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,accepted,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Syzygium gustavioides,native +Syzygium sayeri,Syzygium sayeri,Syzygium sayeri,NA,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,accepted,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Syzygium sayeri,native Teucrium puberulum,Teucrium puberulum,Teucrium puberulum,NA,Teucrium,Lamiaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Teucrium puberulum (F.Muell.) Kattari & Bräuchler,https://id.biodiversity.org.au/taxon/apni/51288087,https://id.biodiversity.org.au/taxon/apni/51438311,https://id.biodiversity.org.au/name/apni/7660439,Teucrium puberulum,https://id.biodiversity.org.au/name/apni/7660439,accepted,https://id.biodiversity.org.au/taxon/apni/51288087,https://id.biodiversity.org.au/taxon/apni/51696573,NA,Teucrium puberulum,native -Thelymitra kangaloonica,Thelymitra kangaloonica,Thelymitra kangaloonica,NA,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,accepted,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51697009,NA,Thelymitra kangaloonica,native +Thelymitra kangaloonica,Thelymitra kangaloonica,Thelymitra kangaloonica,NA,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,accepted,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51727417,NA,Thelymitra kangaloonica,native Thesium australe,Thesium australe,Thesium australe,NA,Thesium,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas (presumed extinct)",Thesium australe R.Br.,https://id.biodiversity.org.au/node/apni/2891975,https://id.biodiversity.org.au/node/apni/2913858,https://id.biodiversity.org.au/name/apni/56224,Thesium australe,https://id.biodiversity.org.au/name/apni/56224,accepted,https://id.biodiversity.org.au/node/apni/2891975,https://id.biodiversity.org.au/taxon/apni/51447154,NA,Thesium australe,native Trema aspera,Trema aspera,Trema tomentosa var. aspera,NA,Trema,Cannabaceae,variety,APC,accepted,Magnoliidae,"WA, Qld, NSW, Vic (presumed extinct)",Trema tomentosa var. aspera (Brongn.) Hewson,https://id.biodiversity.org.au/node/apni/2917190,https://id.biodiversity.org.au/node/apni/2913617,https://id.biodiversity.org.au/name/apni/206199,Trema tomentosa var. aspera,https://id.biodiversity.org.au/name/apni/101838,nomenclatural synonym,https://id.biodiversity.org.au/instance/apni/856997,https://id.biodiversity.org.au/taxon/apni/51269919,Trema tomentosa var. aspera,Trema tomentosa,native Trifolium dubium,Trifolium dubium,Trifolium dubium,NA,Trifolium,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), LHI (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Trifolium dubium Sibth.,https://id.biodiversity.org.au/taxon/apni/51436351,https://id.biodiversity.org.au/taxon/apni/51436341,https://id.biodiversity.org.au/name/apni/115704,Trifolium dubium,https://id.biodiversity.org.au/name/apni/115704,accepted,https://id.biodiversity.org.au/taxon/apni/51436351,https://id.biodiversity.org.au/taxon/apni/51702961,NA,Trifolium dubium,naturalised Veronica catenata,Veronica catenata,Veronica catenata,NA,Veronica,Plantaginaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), Vic (naturalised)",Veronica catenata Pennell,https://id.biodiversity.org.au/node/apni/2897164,https://id.biodiversity.org.au/taxon/apni/51632390,https://id.biodiversity.org.au/name/apni/67965,Veronica catenata,https://id.biodiversity.org.au/name/apni/67965,accepted,https://id.biodiversity.org.au/node/apni/2897164,https://id.biodiversity.org.au/taxon/apni/51699383,NA,Veronica catenata,naturalised Veronica derwentiana,Veronica derwentiana,Veronica derwentiana,NA,Veronica,Plantaginaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Veronica derwentiana Andrews,https://id.biodiversity.org.au/node/apni/2917078,https://id.biodiversity.org.au/taxon/apni/51632390,https://id.biodiversity.org.au/name/apni/68107,Veronica derwentiana,https://id.biodiversity.org.au/name/apni/68107,accepted,https://id.biodiversity.org.au/node/apni/2917078,https://id.biodiversity.org.au/taxon/apni/51699383,NA,Veronica derwentiana,native Wahlenbergia luteola,Wahlenbergia luteola,Wahlenbergia luteola,NA,Wahlenbergia,Campanulaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Wahlenbergia luteola P.J.Sm.,https://id.biodiversity.org.au/node/apni/2916523,https://id.biodiversity.org.au/taxon/apni/51432869,https://id.biodiversity.org.au/name/apni/73194,Wahlenbergia luteola,https://id.biodiversity.org.au/name/apni/73194,accepted,https://id.biodiversity.org.au/node/apni/2916523,https://id.biodiversity.org.au/taxon/apni/51432853,NA,Wahlenbergia luteola,native +Xanthostemon chrysanthus,Xanthostemon chrysanthus,Xanthostemon chrysanthus,NA,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon chrysanthus (F.Muell.) Benth.,https://id.biodiversity.org.au/node/apni/2920567,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/55063,Xanthostemon chrysanthus,https://id.biodiversity.org.au/name/apni/55063,accepted,https://id.biodiversity.org.au/node/apni/2920567,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Xanthostemon chrysanthus,native +Xanthostemon formosus,Xanthostemon formosus,Xanthostemon formosus,NA,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon formosus Peter G.Wilson,https://id.biodiversity.org.au/taxon/apni/51440419,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/117195,Xanthostemon formosus,https://id.biodiversity.org.au/name/apni/117195,accepted,https://id.biodiversity.org.au/taxon/apni/51440419,https://id.biodiversity.org.au/taxon/apni/51738744,NA,Xanthostemon formosus,native diff --git a/tests/testthat/config/traits.yml b/tests/testthat/config/traits.yml index c9167825..66fa3932 100644 --- a/tests/testthat/config/traits.yml +++ b/tests/testthat/config/traits.yml @@ -277,6 +277,22 @@ traits: tussock: A subcategory of graminoid, which is a plant where many shoots from the basal meristem form prominent tufts. entity_URI: https://w3id.org/APD/traits/trait_0030010 + leaf_lifespan: + label: Leaf lifespan + description: The duration [PATO:0001309] that an individual leaf [PO:0025034] + is attached to the stem [PO:0009047] and is physiologically functional [PATO:0001510].;Duration + of time that an individual leaf is attached to the stem and physiologically + functional; leaf longevity. + comments: Leaf lifespan is the inverse of the rate of leaf turnover. For some + species, leaflets or other portions of a leaf may be censused rather than + the entire leaf lamina. Leaf lifespan can be censused as either the rate of + shedding leaves (leaf death) or the rate of formation of new leaves (leaf + birth). + type: numeric + units: mo + allowed_values_min: 1.0 + allowed_values_max: 1000.0 + entity_URI: https://w3id.org/APD/traits/trait_0030025 flowering_time: label: Flowering time, by month description: The months [UO:0000035] during which a plant [PO:0000003] has open diff --git a/tests/testthat/config/unit_conversions.csv b/tests/testthat/config/unit_conversions.csv index 58822eae..9f706fcb 100644 --- a/tests/testthat/config/unit_conversions.csv +++ b/tests/testthat/config/unit_conversions.csv @@ -10,6 +10,8 @@ mo,a,x*1/12 wk,mo,x*1/4.3 wk,a,x*1/52 wk,d,x*7 +d,mo,x*1/30.4167 +mo,d,x*30.4167 {count}/m2,{count}/mm2,x*1/1000000 {count}/cm2,{count}/mm2,x*1/100 cm,m,x*0.01 diff --git a/tests/testthat/examples/Test_2023_1/output/taxa.csv b/tests/testthat/examples/Test_2023_1/output/taxa.csv index f7e063c1..fc4b7652 100644 --- a/tests/testthat/examples/Test_2023_1/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_1/output/taxa.csv @@ -3,11 +3,11 @@ Acacia celsa,Acacia celsa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,Qld, Acronychia acidula,Acronychia acidula,,Acronychia,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Acronychia acidula F.Muell.,https://id.biodiversity.org.au/node/apni/2913200,https://id.biodiversity.org.au/taxon/apni/51446847,https://id.biodiversity.org.au/name/apni/73794,Acronychia acidula,https://id.biodiversity.org.au/name/apni/73794,https://id.biodiversity.org.au/taxon/apni/51461748,,Acronychia acidula,native Aleurites rockinghamensis,Aleurites rockinghamensis,,Aleurites,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Aleurites rockinghamensis (Baill.) P.I.Forst.,https://id.biodiversity.org.au/node/apni/2916622,https://id.biodiversity.org.au/node/apni/2900410,https://id.biodiversity.org.au/name/apni/171057,Aleurites rockinghamensis,https://id.biodiversity.org.au/name/apni/171057,https://id.biodiversity.org.au/taxon/apni/51442249,,Aleurites rockinghamensis,native Alphitonia petriei,Alphitonia petriei,,Alphitonia,Rhamnaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alphitonia petriei Braid & C.T.White,https://id.biodiversity.org.au/node/apni/2887911,https://id.biodiversity.org.au/taxon/apni/51446205,https://id.biodiversity.org.au/name/apni/82935,Alphitonia petriei,https://id.biodiversity.org.au/name/apni/82935,https://id.biodiversity.org.au/taxon/apni/51446206,,Alphitonia petriei,native -Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51700686,,Alstonia scholaris,native +Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51736528,,Alstonia scholaris,native Argyrodendron peralatum,Argyrodendron peralatum,,Argyrodendron,Malvaceae,species,APC,accepted,Magnoliidae,Qld,Argyrodendron peralatum (F.M.Bailey) Edlin ex I.H.Boas,https://id.biodiversity.org.au/node/apni/2915243,https://id.biodiversity.org.au/taxon/apni/51288410,https://id.biodiversity.org.au/name/apni/100216,Argyrodendron peralatum,https://id.biodiversity.org.au/name/apni/100216,https://id.biodiversity.org.au/taxon/apni/51439248,,Argyrodendron peralatum,native Atractocarpus hirtus,Atractocarpus hirtus,,Atractocarpus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Atractocarpus hirtus (F.Muell.) Puttock,https://id.biodiversity.org.au/node/apni/2910460,https://id.biodiversity.org.au/taxon/apni/51446611,https://id.biodiversity.org.au/name/apni/146883,Atractocarpus hirtus,https://id.biodiversity.org.au/name/apni/146883,https://id.biodiversity.org.au/taxon/apni/51446612,,Atractocarpus hirtus,native Brombya platynema,Brombya platynema,,Brombya,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Brombya platynema F.Muell.,https://id.biodiversity.org.au/node/apni/2890280,https://id.biodiversity.org.au/node/apni/7937668,https://id.biodiversity.org.au/name/apni/67607,Brombya platynema,https://id.biodiversity.org.au/name/apni/67607,https://id.biodiversity.org.au/taxon/apni/51461748,,Brombya platynema,native -Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51614274,,Cardwellia sublimis,native +Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51732901,,Cardwellia sublimis,native Castanospermum australe,Castanospermum australe,,Castanospermum,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, NI (doubtfully naturalised)",Castanospermum australe A.Cunn. ex Mudie,https://id.biodiversity.org.au/node/apni/2894943,https://id.biodiversity.org.au/node/apni/7226268,https://id.biodiversity.org.au/name/apni/196675,Castanospermum australe,https://id.biodiversity.org.au/name/apni/196675,https://id.biodiversity.org.au/taxon/apni/51702961,,Castanospermum australe,native and naturalised Cleistanthus myrianthus,Cleistanthus myrianthus,,Cleistanthus,Phyllanthaceae,species,APC,accepted,Magnoliidae,Qld,Cleistanthus myrianthus (Hassk.) Kurz,https://id.biodiversity.org.au/node/apni/2897700,https://id.biodiversity.org.au/node/apni/2914326,https://id.biodiversity.org.au/name/apni/71354,Cleistanthus myrianthus,https://id.biodiversity.org.au/name/apni/71354,https://id.biodiversity.org.au/taxon/apni/51442162,,Cleistanthus myrianthus,native Cryptocarya laevigata,Cryptocarya laevigata,,Cryptocarya,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cryptocarya laevigata Blume,https://id.biodiversity.org.au/node/apni/2903400,https://id.biodiversity.org.au/taxon/apni/51438401,https://id.biodiversity.org.au/name/apni/88410,Cryptocarya laevigata,https://id.biodiversity.org.au/name/apni/88410,https://id.biodiversity.org.au/taxon/apni/51438397,,Cryptocarya laevigata,native @@ -32,13 +32,13 @@ Melicope elleryana,Melicope elleryana,,Melicope,Rutaceae,species,APC,accepted,Ma Myristica insipida,Myristica insipida,,Myristica,Myristicaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Myristica insipida R.Br.,https://id.biodiversity.org.au/node/apni/2902429,https://id.biodiversity.org.au/node/apni/2895962,https://id.biodiversity.org.au/name/apni/86064,Myristica insipida,https://id.biodiversity.org.au/name/apni/86064,https://id.biodiversity.org.au/node/apni/2903136,,Myristica insipida,native Neolitsea dealbata,Neolitsea dealbata,,Neolitsea,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Neolitsea dealbata (R.Br.) Merr.,https://id.biodiversity.org.au/node/apni/2910025,https://id.biodiversity.org.au/node/apni/2914447,https://id.biodiversity.org.au/name/apni/79589,Neolitsea dealbata,https://id.biodiversity.org.au/name/apni/79589,https://id.biodiversity.org.au/taxon/apni/51438397,,Neolitsea dealbata,native Pittosporum rubiginosum,Pittosporum rubiginosum,,Pittosporum,Pittosporaceae,species,APC,accepted,Magnoliidae,Qld,Pittosporum rubiginosum A.Cunn.,https://id.biodiversity.org.au/node/apni/2887772,https://id.biodiversity.org.au/taxon/apni/51442349,https://id.biodiversity.org.au/name/apni/100119,Pittosporum rubiginosum,https://id.biodiversity.org.au/name/apni/100119,https://id.biodiversity.org.au/taxon/apni/51442315,,Pittosporum rubiginosum,native -Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51613975,https://id.biodiversity.org.au/taxon/apni/51613976,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51613977,,Polyalthia submontana,native -Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51292784,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51632289,,Polyscias australiana,native +Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51735993,https://id.biodiversity.org.au/taxon/apni/51735989,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51735960,,Polyalthia submontana,native +Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51737050,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51736765,,Polyscias australiana,native Psychotria dallachiana,Psychotria dallachiana,,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria dallachiana Benth.,https://id.biodiversity.org.au/node/apni/2890013,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/89074,Psychotria dallachiana,https://id.biodiversity.org.au/name/apni/89074,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria dallachiana,native Psychotria sp Utchee Creek,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria sp. Utchee Creek (H.Flecker NQNC5313) Qld Herbarium,https://id.biodiversity.org.au/taxon/apni/51446727,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/218829,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),https://id.biodiversity.org.au/name/apni/218829,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),native -Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51702983,,Rhodomyrtus trineura,native +Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51738744,,Rhodomyrtus trineura,native Rockinghamia angustifolia,Rockinghamia angustifolia,,Rockinghamia,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Rockinghamia angustifolia (Benth.) Airy Shaw,https://id.biodiversity.org.au/node/apni/2921179,https://id.biodiversity.org.au/node/apni/2892697,https://id.biodiversity.org.au/name/apni/61487,Rockinghamia angustifolia,https://id.biodiversity.org.au/name/apni/61487,https://id.biodiversity.org.au/taxon/apni/51442249,,Rockinghamia angustifolia,native Quassia baileyana,Samadera baileyana,,Samadera,Simaroubaceae,species,APC,accepted,Magnoliidae,Qld,Samadera baileyana Oliv.,https://id.biodiversity.org.au/node/apni/2891526,https://id.biodiversity.org.au/node/apni/2900441,https://id.biodiversity.org.au/name/apni/60763,Samadera baileyana,https://id.biodiversity.org.au/name/apni/70084,https://id.biodiversity.org.au/taxon/apni/51316490,,Samadera baileyana,native -Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium graveolens,native -Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium sayeri,native +Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium graveolens,native +Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium sayeri,native Trema aspera,Trema tomentosa var. aspera,,Trema,Cannabaceae,variety,APC,accepted,Magnoliidae,"WA, Qld, NSW, Vic (presumed extinct)",Trema tomentosa var. aspera (Brongn.) Hewson,https://id.biodiversity.org.au/node/apni/2917190,https://id.biodiversity.org.au/node/apni/2913617,https://id.biodiversity.org.au/name/apni/206199,Trema tomentosa var. aspera,https://id.biodiversity.org.au/name/apni/101838,https://id.biodiversity.org.au/taxon/apni/51269919,Trema tomentosa var. aspera,Trema tomentosa,native diff --git a/tests/testthat/examples/Test_2023_2/output/taxa.csv b/tests/testthat/examples/Test_2023_2/output/taxa.csv index 19bec5a5..f431ec7f 100644 --- a/tests/testthat/examples/Test_2023_2/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_2/output/taxa.csv @@ -3,11 +3,11 @@ Acacia celsa,Acacia celsa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,Qld, Acronychia acidula,Acronychia acidula,,Acronychia,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Acronychia acidula F.Muell.,https://id.biodiversity.org.au/node/apni/2913200,https://id.biodiversity.org.au/taxon/apni/51446847,https://id.biodiversity.org.au/name/apni/73794,Acronychia acidula,https://id.biodiversity.org.au/name/apni/73794,https://id.biodiversity.org.au/taxon/apni/51461748,,Acronychia acidula,native Aleurites rockinghamensis,Aleurites rockinghamensis,,Aleurites,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Aleurites rockinghamensis (Baill.) P.I.Forst.,https://id.biodiversity.org.au/node/apni/2916622,https://id.biodiversity.org.au/node/apni/2900410,https://id.biodiversity.org.au/name/apni/171057,Aleurites rockinghamensis,https://id.biodiversity.org.au/name/apni/171057,https://id.biodiversity.org.au/taxon/apni/51442249,,Aleurites rockinghamensis,native Alphitonia petriei,Alphitonia petriei,,Alphitonia,Rhamnaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alphitonia petriei Braid & C.T.White,https://id.biodiversity.org.au/node/apni/2887911,https://id.biodiversity.org.au/taxon/apni/51446205,https://id.biodiversity.org.au/name/apni/82935,Alphitonia petriei,https://id.biodiversity.org.au/name/apni/82935,https://id.biodiversity.org.au/taxon/apni/51446206,,Alphitonia petriei,native -Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51700686,,Alstonia scholaris,native +Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51736528,,Alstonia scholaris,native Argyrodendron peralatum,Argyrodendron peralatum,,Argyrodendron,Malvaceae,species,APC,accepted,Magnoliidae,Qld,Argyrodendron peralatum (F.M.Bailey) Edlin ex I.H.Boas,https://id.biodiversity.org.au/node/apni/2915243,https://id.biodiversity.org.au/taxon/apni/51288410,https://id.biodiversity.org.au/name/apni/100216,Argyrodendron peralatum,https://id.biodiversity.org.au/name/apni/100216,https://id.biodiversity.org.au/taxon/apni/51439248,,Argyrodendron peralatum,native Atractocarpus hirtus,Atractocarpus hirtus,,Atractocarpus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Atractocarpus hirtus (F.Muell.) Puttock,https://id.biodiversity.org.au/node/apni/2910460,https://id.biodiversity.org.au/taxon/apni/51446611,https://id.biodiversity.org.au/name/apni/146883,Atractocarpus hirtus,https://id.biodiversity.org.au/name/apni/146883,https://id.biodiversity.org.au/taxon/apni/51446612,,Atractocarpus hirtus,native Brombya platynema,Brombya platynema,,Brombya,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Brombya platynema F.Muell.,https://id.biodiversity.org.au/node/apni/2890280,https://id.biodiversity.org.au/node/apni/7937668,https://id.biodiversity.org.au/name/apni/67607,Brombya platynema,https://id.biodiversity.org.au/name/apni/67607,https://id.biodiversity.org.au/taxon/apni/51461748,,Brombya platynema,native -Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51614274,,Cardwellia sublimis,native +Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51732901,,Cardwellia sublimis,native Castanospermum australe,Castanospermum australe,,Castanospermum,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, NI (doubtfully naturalised)",Castanospermum australe A.Cunn. ex Mudie,https://id.biodiversity.org.au/node/apni/2894943,https://id.biodiversity.org.au/node/apni/7226268,https://id.biodiversity.org.au/name/apni/196675,Castanospermum australe,https://id.biodiversity.org.au/name/apni/196675,https://id.biodiversity.org.au/taxon/apni/51702961,,Castanospermum australe,native and naturalised Cleistanthus myrianthus,Cleistanthus myrianthus,,Cleistanthus,Phyllanthaceae,species,APC,accepted,Magnoliidae,Qld,Cleistanthus myrianthus (Hassk.) Kurz,https://id.biodiversity.org.au/node/apni/2897700,https://id.biodiversity.org.au/node/apni/2914326,https://id.biodiversity.org.au/name/apni/71354,Cleistanthus myrianthus,https://id.biodiversity.org.au/name/apni/71354,https://id.biodiversity.org.au/taxon/apni/51442162,,Cleistanthus myrianthus,native Cryptocarya laevigata,Cryptocarya laevigata,,Cryptocarya,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cryptocarya laevigata Blume,https://id.biodiversity.org.au/node/apni/2903400,https://id.biodiversity.org.au/taxon/apni/51438401,https://id.biodiversity.org.au/name/apni/88410,Cryptocarya laevigata,https://id.biodiversity.org.au/name/apni/88410,https://id.biodiversity.org.au/taxon/apni/51438397,,Cryptocarya laevigata,native @@ -33,14 +33,14 @@ Melicope elleryana,Melicope elleryana,,Melicope,Rutaceae,species,APC,accepted,Ma Myristica insipida,Myristica insipida,,Myristica,Myristicaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Myristica insipida R.Br.,https://id.biodiversity.org.au/node/apni/2902429,https://id.biodiversity.org.au/node/apni/2895962,https://id.biodiversity.org.au/name/apni/86064,Myristica insipida,https://id.biodiversity.org.au/name/apni/86064,https://id.biodiversity.org.au/node/apni/2903136,,Myristica insipida,native Neolitsea dealbata,Neolitsea dealbata,,Neolitsea,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Neolitsea dealbata (R.Br.) Merr.,https://id.biodiversity.org.au/node/apni/2910025,https://id.biodiversity.org.au/node/apni/2914447,https://id.biodiversity.org.au/name/apni/79589,Neolitsea dealbata,https://id.biodiversity.org.au/name/apni/79589,https://id.biodiversity.org.au/taxon/apni/51438397,,Neolitsea dealbata,native Pittosporum rubiginosum,Pittosporum rubiginosum,,Pittosporum,Pittosporaceae,species,APC,accepted,Magnoliidae,Qld,Pittosporum rubiginosum A.Cunn.,https://id.biodiversity.org.au/node/apni/2887772,https://id.biodiversity.org.au/taxon/apni/51442349,https://id.biodiversity.org.au/name/apni/100119,Pittosporum rubiginosum,https://id.biodiversity.org.au/name/apni/100119,https://id.biodiversity.org.au/taxon/apni/51442315,,Pittosporum rubiginosum,native -Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51613975,https://id.biodiversity.org.au/taxon/apni/51613976,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51613977,,Polyalthia submontana,native -Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51292784,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51632289,,Polyscias australiana,native +Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51735993,https://id.biodiversity.org.au/taxon/apni/51735989,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51735960,,Polyalthia submontana,native +Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51737050,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51736765,,Polyscias australiana,native Psychotria dallachiana,Psychotria dallachiana,,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria dallachiana Benth.,https://id.biodiversity.org.au/node/apni/2890013,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/89074,Psychotria dallachiana,https://id.biodiversity.org.au/name/apni/89074,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria dallachiana,native Psychotria sp Utchee Creek,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria sp. Utchee Creek (H.Flecker NQNC5313) Qld Herbarium,https://id.biodiversity.org.au/taxon/apni/51446727,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/218829,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),https://id.biodiversity.org.au/name/apni/218829,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),native -Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51702983,,Rhodomyrtus trineura,native +Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51738744,,Rhodomyrtus trineura,native Rockinghamia angustifolia,Rockinghamia angustifolia,,Rockinghamia,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Rockinghamia angustifolia (Benth.) Airy Shaw,https://id.biodiversity.org.au/node/apni/2921179,https://id.biodiversity.org.au/node/apni/2892697,https://id.biodiversity.org.au/name/apni/61487,Rockinghamia angustifolia,https://id.biodiversity.org.au/name/apni/61487,https://id.biodiversity.org.au/taxon/apni/51442249,,Rockinghamia angustifolia,native Quassia baileyana,Samadera baileyana,,Samadera,Simaroubaceae,species,APC,accepted,Magnoliidae,Qld,Samadera baileyana Oliv.,https://id.biodiversity.org.au/node/apni/2891526,https://id.biodiversity.org.au/node/apni/2900441,https://id.biodiversity.org.au/name/apni/60763,Samadera baileyana,https://id.biodiversity.org.au/name/apni/70084,https://id.biodiversity.org.au/taxon/apni/51316490,,Samadera baileyana,native -Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium graveolens,native -Syzygium gustavioides,Syzygium gustavioides,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium gustavioides,native -Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium sayeri,native +Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium graveolens,native +Syzygium gustavioides,Syzygium gustavioides,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium gustavioides,native +Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium sayeri,native Trema aspera,Trema tomentosa var. aspera,,Trema,Cannabaceae,variety,APC,accepted,Magnoliidae,"WA, Qld, NSW, Vic (presumed extinct)",Trema tomentosa var. aspera (Brongn.) Hewson,https://id.biodiversity.org.au/node/apni/2917190,https://id.biodiversity.org.au/node/apni/2913617,https://id.biodiversity.org.au/name/apni/206199,Trema tomentosa var. aspera,https://id.biodiversity.org.au/name/apni/101838,https://id.biodiversity.org.au/taxon/apni/51269919,Trema tomentosa var. aspera,Trema tomentosa,native diff --git a/tests/testthat/examples/Test_2023_3/metadata.yml b/tests/testthat/examples/Test_2023_3/metadata.yml index 15313841..6211a1ff 100644 --- a/tests/testthat/examples/Test_2023_3/metadata.yml +++ b/tests/testthat/examples/Test_2023_3/metadata.yml @@ -227,393 +227,6 @@ substitutions: - trait_name: flowering_time find: not observed replace: .na -taxonomic_updates: -- find: Acaena anserovina - replace: Acaena x anserovina - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Acaena ovina - replace: Acaena x ovina - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Acaena sp. Thredbo River Gorge (L.A.S.Johnson ;amp; E.F.Constable s.n., 19 - Jan 1951) - replace: Acaena sp. Thredbo River Gorge (L.A.S.Johnson & E.F.Constable s.n., 19 - Jan 1951) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: species -- find: Alstonia constricta f. Pubescent form - replace: Alstonia constricta Pubescent form - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: species -- find: Arthropteris beckleri x tenella - replace: Arthropteris x [Arthropteris beckleri x tenella; NHNSW_2022] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-22) - taxonomic_resolution: genus -- find: Atriplex sp. B sensu Jacobs (1990) - replace: Atriplex sp. B - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Banksia spinulosa var. collina-spinulosa intergrade - replace: Banksia spinulosa var. collina - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: variety -- find: Bertya tasmanica variant ;qu;Glabrous ovary;qu; - replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: variety -- find: Blechnum fullagarii - replace: Blechnum fullagari - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Caladenia sp. A sensu Harden (1993) - replace: Caladenia sp. A - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Centaurea sp. A sensu Murray (1992) - replace: Centaurea sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Cephalomanes atrovirens subsp. atrovirens - replace: Cephalomanes atrovirens - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 ;amp; T.R.Lally) - replace: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 & T.R.Lally) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: species -- find: Cipadessa baccifera - replace: Cipadessa baccifera - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Crocosmia crocosmiiflora - replace: Crocosmia x crocosmiiflora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Cyperus bowmannii - replace: Cyperus bowmanni - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Cyperus sp. Stockton (K.L.Wilson 10541) - replace: Cyperus sp. [Cyperus sp. Stockton (K.L.Wilson 10541); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Dillwynia sp. Ebor (P.C.Jobson 5318 ;amp; S.A.Mills) - replace: Dillwynia sp. Ebor (P.C.Jobson 5318 & S.A.Mills) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: species -- find: Epidendrum radicans x secundum hybrid complex - replace: Epidendrum radicans x Epidendrum secundum - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Eriochilus cucullatus complex - replace: Eriochilus cucullatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Eucalyptus conjuncta - replace: Eucalyptus x conjuncta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Eucalyptus dealbata subsp. dealbata - replace: Eucalyptus dealbata var. dealbata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Flacourtia sp. shiptons flat l w jessup gj.d3200 - replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Genoplesium cuspidatum - replace: Genoplesium sp. Cuspidata (L.M.Copeland 3858) - reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name - in `APC known` when everything except first 2 words ignored (2022-11-22) - taxonomic_resolution: species -- find: Genoplesium sp. Charmhaven (NSW896673) - replace: Genoplesium sp. Charmhaven (NSW 896673) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Glycine pacifica - replace: Glycine pacifica (Grace 946) - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Hibbertia sp. B sensu Harden (1990) - replace: Hibbertia sp. B - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Hibbertia stricta subsp. stricta - replace: Hibbertia stricta var. stricta - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Hoffmannseggia glauca - replace: Hoffmannseggia glauca - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Houttuynia cordata - replace: Houttuynia cordata - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Impatiens balfouri - replace: Impatiens balfourii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Kunzea capitata subsp. capitata - replace: Kunzea capitata var. capitata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Lenwebbia sp. Main Range (P.R.Sharpe 4877) - replace: Lenwebbia sp. Main Range (P.R.Sharpe+ 4877) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Lepidium sp. Cooma (J.H.Maiden NSW642748) - replace: Lepidium sp. [Lepidium sp. Cooma (J.H.Maiden NSW642748); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Leucopogon lanceolatus var. lanceolatus - replace: Leucopogon lanceolatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Luzula densiflora subsp. densiflora - replace: Luzula densiflora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Luzula flaccida subsp. flaccida - replace: Leucas flaccida var. flaccida - reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC - (2022-11-21) - taxonomic_resolution: variety -- find: Margyricarpus pinnatus - replace: Margyricarpus pinnatus - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) Makinson - replace: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) - reason: match_05. Automatic alignment with scientific name in APC accepted list - (2022-11-21) - taxonomic_resolution: subspecies -- find: Muehlenbeckia diclina subsp. Pooncarie (W.E. Mulham W811) - replace: Muehlenbeckia diclina subsp. Pooncarie (W.E.Mulham W811) - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: subspecies -- find: Myosotis laxa subsp. caespitosa - replace: Myosotis laxa subsp. cespitosa - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: subspecies -- find: Netrostylis sp. East Coast (D.E. Albrecht 597) - replace: Netrostylis sp. [Netrostylis sp. East Coast (D.E. Albrecht 597); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI - (2022-11-22) - taxonomic_resolution: genus -- find: Notelaea sp. A sensu Harden (1992) - replace: Notelaea sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Opuntia sp. sensu I.Telford (1984) - replace: Opuntia sp. [Opuntia sp. sensu I.Telford (1984); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Owenia reliqua - replace: Owenia x reliqua - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Pelargonium asperum - replace: Pelargonium x asperum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Pimelea neo-anglica - replace: Pimelea neoanglica - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: species -- find: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) Vic. Herbarium - replace: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) - reason: match_05. Automatic alignment with scientific name in APC accepted list - (2022-11-21) - taxonomic_resolution: subspecies -- find: Pomaderris andromedifolia f. ;qu;andromedifolia;qu; - replace: Pomaderris andromedifolia subsp. andromedifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: subspecies -- find: Pomaderris andromedifolia f. ;qu;narrow-leaved;qu; - replace: Pomaderris andromedifolia f. 'narrow-leaved' - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: form -- find: Pomaderris andromedifolia f. ;qu;small-leaved;qu; - replace: Pomaderris andromedifolia subsp. andromedifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: subspecies -- find: Potamogeton tricarinatus auct. non F.Muell. ;amp; A.Benn. ex A.Benn. - replace: Potamogeton tricarinatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Prasophyllum sp. A sensu Harden (1993) - replace: Prasophyllum sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 ;amp; J.M.Cohen) - replace: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 & J.M.Cohen) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Narrabri (R.G.Coveny 8811 ;amp; S.K.Roy) - replace: Pultenaea sp. (Narrabri R.G.Coveny+ 8811) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Newnes (I.R.Telford 5072 ;amp; M.D.Crisp) - replace: Pultenaea sp. Newnes (I.R.Telford 5072 & M.D.Crisp) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Shadowgraph Bluff (T. ;amp; J.Whaite 3455) - replace: Pultenaea sp. Shadowgraph Bluff (T. & J.Whaite 3455) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Quassia sp. Moonee Creek (King s.n., Nov 1949) - replace: Quassia sp. 'Moonee Creek' (King s.n., Nov 1949) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Radermachera sinica - replace: Radermachera sinica - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Rotheca myricoides subsp. myricoides - replace: Rotheca myricoides - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Rubus loganobaccus - replace: Rubus loganubaccus - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Salix matsudana x alba - replace: Salix matsudana x Salix alba - reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, - 2022-11-21) - taxonomic_resolution: species -- find: Salix x fragilis var. fragilis - replace: Salix x fragilis - reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, - 2022-11-21) - taxonomic_resolution: species -- find: Salix x sepulcralis var. chrysocoma - replace: Salix x sepulcralis - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Salix x sepulcralis var. sepulcralis - replace: Salix x sepulcralis - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: variety -- find: Salvinia molesta - replace: Salvinia x molesta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Sarcocornia quinqueflora subsp. quinqueflora - replace: Salicornia quinqueflora subsp. quinqueflora - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: subspecies -- find: Scleranthus sp. Fitz;qu;s Hill (J.G.West 5342) - replace: Scleranthus sp. Fitz's Hill (J.G.West 5342) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Sebaea zeyheri subsp. cleistantha - replace: Sebaea zeyheri - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sida sp. B sensu Harden (1990) - replace: Sida sp. B - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sida sp. C sensu Harden (1990) - replace: Sida sp. C - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sorghum almum - replace: Sorghum x almum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Sorghum bicolor subsp. almum - replace: Sorghum bicolor subsp. x almum - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: subspecies -- find: Sorghum bicolor subsp. drummondii - replace: Sorghum bicolor subsp. x drummondii - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: subspecies -- find: Spiraea x billiardii - replace: Spiraea x billardii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Suaeda sp. A sensu Harden (1990) - replace: Suaeda sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Teucrium sp. D sensu Conn (1992) - replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Thelymitra irregularis - replace: Thelymitra x irregularis - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Thelymitra merraniae - replace: Thelymitra merranae - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Thelymitra truncata - replace: Thelymitra x truncata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: X Triticosecale - replace: x Triticosecale - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Acacia melvillei-homalophylla - replace: Acacia sp. [Acacia melvillei-homalophylla; NHNSW_2023] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2023-05-24) - taxonomic_resolution: genus -exclude_observations: -- variable: taxon_name - find: Salix humboldtiana cv. ;qu;Pyramidalis;qu;, Salix matsudana cv. ;qu;Tortuosa;qu;, - Cyrtomium falcatum ;qu;Rochfordii;qu; - reason: excluding cultivars -- variable: taxon_name - find: Cipadessa baccifera, Hoffmannseggia glauca, Houttuynia cordata, Margyricarpus - pinnatus, Radermachera sinica, x Triticosecale, Euryops virgineus, Fraxinus chinensis, - Ipomoea fimbriosepala, Persicaria chinensis, Pteris nipponica, Passiflora miniata - reason: non-native, non-naturalised species +taxonomic_updates: .na +exclude_observations: .na questions: .na diff --git a/tests/testthat/examples/Test_2023_3/output/taxa.csv b/tests/testthat/examples/Test_2023_3/output/taxa.csv index fbbc4378..7a90d716 100644 --- a/tests/testthat/examples/Test_2023_3/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_3/output/taxa.csv @@ -1,7 +1,7 @@ original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means Abildgaardia ovata,Abildgaardia ovata,,Abildgaardia,Cyperaceae,species,APC,accepted,Magnoliidae,"NT, Qld, NSW",Abildgaardia ovata (Burm.f.) Kral,https://id.biodiversity.org.au/node/apni/2919627,https://id.biodiversity.org.au/node/apni/2905759,https://id.biodiversity.org.au/name/apni/150737,Abildgaardia ovata,https://id.biodiversity.org.au/name/apni/150737,https://id.biodiversity.org.au/taxon/apni/51460154,,Abildgaardia ovata,native Acacia alpina,Acacia alpina,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Acacia alpina F.Muell.,https://id.biodiversity.org.au/node/apni/2907301,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58263,Acacia alpina,https://id.biodiversity.org.au/name/apni/58263,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia alpina,native -Acacia beadleana,Acacia beadleana,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/165277,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia beadleana,native +Acacia beadleana,Acacia beadleana,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/244690,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia beadleana,native Acacia bulgaensis,Acacia bulgaensis,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia bulgaensis Tindale & S.J.Davies,https://id.biodiversity.org.au/node/apni/2889179,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/117995,Acacia bulgaensis,https://id.biodiversity.org.au/name/apni/117995,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia bulgaensis,native Acacia caroleae,Acacia caroleae,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia caroleae Pedley,https://id.biodiversity.org.au/node/apni/2894332,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/60225,Acacia caroleae,https://id.biodiversity.org.au/name/apni/60225,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia caroleae,native Acacia crassa,Acacia crassa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia crassa Pedley,https://id.biodiversity.org.au/node/apni/2919707,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/60887,Acacia crassa,https://id.biodiversity.org.au/name/apni/60887,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia crassa,native @@ -19,16 +19,16 @@ Alectryon coriaceus,Alectryon coriaceus,,Alectryon,Sapindaceae,species,APC,accep Alectryon oleifolius,Alectryon oleifolius,,Alectryon,Sapindaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Alectryon oleifolius (Desf.) S.T.Reynolds,https://id.biodiversity.org.au/node/apni/2900874,https://id.biodiversity.org.au/taxon/apni/51299789,https://id.biodiversity.org.au/name/apni/81066,Alectryon oleifolius,https://id.biodiversity.org.au/name/apni/81066,https://id.biodiversity.org.au/taxon/apni/51447212,,Alectryon oleifolius,native Alectryon subdentatus,Alectryon subdentatus,,Alectryon,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alectryon subdentatus (F.Muell. ex Benth.) Radlk.,https://id.biodiversity.org.au/node/apni/2890534,https://id.biodiversity.org.au/taxon/apni/51299789,https://id.biodiversity.org.au/name/apni/81114,Alectryon subdentatus,https://id.biodiversity.org.au/name/apni/81114,https://id.biodiversity.org.au/taxon/apni/51447212,,Alectryon subdentatus,native Amyema preissii,Amyema preissii,,Amyema,Loranthaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Amyema preissii (Miq.) Tiegh.,https://id.biodiversity.org.au/node/apni/2888430,https://id.biodiversity.org.au/taxon/apni/51438795,https://id.biodiversity.org.au/name/apni/87461,Amyema preissii,https://id.biodiversity.org.au/name/apni/87461,https://id.biodiversity.org.au/taxon/apni/51438796,,Amyema preissii,native -Angophora leiocarpa,Angophora leiocarpa,,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,https://id.biodiversity.org.au/taxon/apni/51702983,,Angophora leiocarpa,native -Arbutus unedo,Arbutus unedo,,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,https://id.biodiversity.org.au/taxon/apni/51436079,,Arbutus unedo,naturalised +Angophora leiocarpa,Angophora leiocarpa,,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,https://id.biodiversity.org.au/taxon/apni/51738744,,Angophora leiocarpa,native +Arbutus unedo,Arbutus unedo,,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,https://id.biodiversity.org.au/taxon/apni/51738121,,Arbutus unedo,naturalised Australina pusilla,Australina pusilla,,Australina,Urticaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas",Australina pusilla (Poir.) Gaudich.,https://id.biodiversity.org.au/node/apni/2913845,https://id.biodiversity.org.au/node/apni/2907879,https://id.biodiversity.org.au/name/apni/113875,Australina pusilla,https://id.biodiversity.org.au/name/apni/113875,https://id.biodiversity.org.au/taxon/apni/51662052,,Australina pusilla,native Burmannia disticha,Burmannia disticha,,Burmannia,Burmanniaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Burmannia disticha L.,https://id.biodiversity.org.au/node/apni/2900088,https://id.biodiversity.org.au/node/apni/2915743,https://id.biodiversity.org.au/name/apni/70173,Burmannia disticha,https://id.biodiversity.org.au/name/apni/70173,https://id.biodiversity.org.au/node/apni/2887196,,Burmannia disticha,native Bursaria spinosa subsp. spinosa,Bursaria spinosa subsp. spinosa,,Bursaria,Pittosporaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, Vic, Tas",Bursaria spinosa Cav. subsp. spinosa,https://id.biodiversity.org.au/taxon/apni/51442337,https://id.biodiversity.org.au/taxon/apni/51442339,https://id.biodiversity.org.au/name/apni/142036,Bursaria spinosa subsp. spinosa,https://id.biodiversity.org.au/name/apni/142036,https://id.biodiversity.org.au/taxon/apni/51442315,Bursaria spinosa subsp. spinosa,Bursaria spinosa,native Calendula arvensis,Calendula arvensis,,Calendula,Asteraceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Calendula arvensis L.,https://id.biodiversity.org.au/node/apni/2891878,https://id.biodiversity.org.au/node/apni/2893748,https://id.biodiversity.org.au/name/apni/95042,Calendula arvensis,https://id.biodiversity.org.au/name/apni/95042,https://id.biodiversity.org.au/taxon/apni/51695393,,Calendula arvensis,naturalised -Callistemon purpurascens,Callistemon purpurascens,,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,https://id.biodiversity.org.au/taxon/apni/51702983,,Callistemon purpurascens,native +Callistemon purpurascens,Callistemon purpurascens,,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,https://id.biodiversity.org.au/taxon/apni/51738744,,Callistemon purpurascens,native Apophyllum anomalum,Capparis anomala,,Capparis,Capparaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Capparis anomala (F.Muell.) Byng & Christenh.,https://id.biodiversity.org.au/taxon/apni/51432888,https://id.biodiversity.org.au/taxon/apni/51432886,https://id.biodiversity.org.au/name/apni/50561973,Capparis anomala,https://id.biodiversity.org.au/name/apni/97697,https://id.biodiversity.org.au/taxon/apni/51433682,,Capparis anomala,native Carex leporina,Carex leporina,,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Carex leporina L.,https://id.biodiversity.org.au/node/apni/2902492,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/135236,Carex leporina,https://id.biodiversity.org.au/name/apni/135236,https://id.biodiversity.org.au/taxon/apni/51460154,,Carex leporina,naturalised -Carex cephalotes,Carex pyrenaica var. cephalotes,,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/110600,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native +Carex cephalotes,Carex pyrenaica var. cephalotes,,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/235569,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native Carex raleighii,Carex raleighii,,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Carex raleighii Nelmes,https://id.biodiversity.org.au/node/apni/2910405,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111690,Carex raleighii,https://id.biodiversity.org.au/name/apni/111690,https://id.biodiversity.org.au/taxon/apni/51460154,,Carex raleighii,native Carmichaelia exsul,Carmichaelia exsul,,Carmichaelia,Fabaceae,species,APC,accepted,Magnoliidae,LHI,Carmichaelia exsul F.Muell.,https://id.biodiversity.org.au/node/apni/2915240,https://id.biodiversity.org.au/node/apni/8138105,https://id.biodiversity.org.au/name/apni/112335,Carmichaelia exsul,https://id.biodiversity.org.au/name/apni/112335,https://id.biodiversity.org.au/taxon/apni/51702961,,Carmichaelia exsul,native Cassinia compacta,Cassinia compacta,Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied),Cassinia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cassinia compacta F.Muell.,https://id.biodiversity.org.au/node/apni/2909860,https://id.biodiversity.org.au/taxon/apni/51431788,https://id.biodiversity.org.au/name/apni/54723,Cassinia compacta [alternative possible names: Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51695393,,Cassinia compacta,native @@ -43,8 +43,8 @@ Convolvulus farinosus,Convolvulus farinosus,,Convolvulus,Convolvulaceae,species, Coprosma niphophila,Coprosma niphophila,,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,NSW,Coprosma niphophila Orchard,https://id.biodiversity.org.au/node/apni/2910618,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78856,Coprosma niphophila,https://id.biodiversity.org.au/name/apni/78856,https://id.biodiversity.org.au/taxon/apni/51446612,,Coprosma niphophila,native Coprosma nivalis,Coprosma nivalis,,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Coprosma nivalis W.R.B.Oliv.,https://id.biodiversity.org.au/node/apni/2915002,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78866,Coprosma nivalis,https://id.biodiversity.org.au/name/apni/78866,https://id.biodiversity.org.au/taxon/apni/51446612,,Coprosma nivalis,native Correa alba,Correa alba,,Correa,Rutaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Correa alba Andrews,https://id.biodiversity.org.au/node/apni/2906721,https://id.biodiversity.org.au/taxon/apni/51447015,https://id.biodiversity.org.au/name/apni/80283,Correa alba,https://id.biodiversity.org.au/name/apni/80283,https://id.biodiversity.org.au/taxon/apni/51461748,,Correa alba,native -Corymbia citriodora,Corymbia citriodora,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,https://id.biodiversity.org.au/taxon/apni/51702983,,Corymbia citriodora,native and naturalised -Corymbia eximia,Corymbia eximia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,https://id.biodiversity.org.au/taxon/apni/51702983,,Corymbia eximia,native +Corymbia citriodora,Corymbia citriodora,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia citriodora,native and naturalised +Corymbia eximia,Corymbia eximia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia eximia,native Crassula decumbens,Crassula decumbens,,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, ACT, Vic, Tas",Crassula decumbens Thunb.,https://id.biodiversity.org.au/node/apni/2889646,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/83855,Crassula decumbens,https://id.biodiversity.org.au/name/apni/83855,https://id.biodiversity.org.au/taxon/apni/51270792,,Crassula decumbens,native Crassula peduncularis,Crassula peduncularis,,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, ACT, Vic, Tas",Crassula peduncularis (Sm.) F.Meigen,https://id.biodiversity.org.au/node/apni/2895654,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/84005,Crassula peduncularis,https://id.biodiversity.org.au/name/apni/84005,https://id.biodiversity.org.au/taxon/apni/51270792,,Crassula peduncularis,native Crotalaria brevis,Crotalaria brevis,,Crotalaria,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Crotalaria brevis Domin,https://id.biodiversity.org.au/node/apni/2906180,https://id.biodiversity.org.au/taxon/apni/51300011,https://id.biodiversity.org.au/name/apni/85578,Crotalaria brevis,https://id.biodiversity.org.au/name/apni/85578,https://id.biodiversity.org.au/taxon/apni/51702961,,Crotalaria brevis,native @@ -65,31 +65,31 @@ Dillwynia floribunda,Dillwynia floribunda,,Dillwynia,Fabaceae,species,APC,accept Dinosperma erythrococcum,Dinosperma erythrococcum,,Dinosperma,Rutaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Dinosperma erythrococcum (F.Muell.) T.G.Hartley,https://id.biodiversity.org.au/node/apni/2897246,https://id.biodiversity.org.au/node/apni/2900591,https://id.biodiversity.org.au/name/apni/157718,Dinosperma erythrococcum,https://id.biodiversity.org.au/name/apni/157718,https://id.biodiversity.org.au/taxon/apni/51461748,,Dinosperma erythrococcum,native Dodonaea petiolaris,Dodonaea petiolaris,Dodonaea viscosa subsp. mucronata (pro parte misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Dodonaea petiolaris F.Muell.,https://id.biodiversity.org.au/node/apni/2921131,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72184,Dodonaea petiolaris [alternative possible names: Dodonaea viscosa subsp. mucronata (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51447212,,Dodonaea petiolaris,native Dodonaea truncatiales,Dodonaea truncatiales,Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Dodonaea truncatiales F.Muell.,https://id.biodiversity.org.au/node/apni/7870563,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72648,Dodonaea truncatiales [alternative possible names: Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51447212,,Dodonaea truncatiales,native -Dovyalis caffra,Dovyalis caffra,,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/86110,https://id.biodiversity.org.au/taxon/apni/51436847,,Dovyalis caffra,naturalised +Dovyalis caffra,Dovyalis caffra,,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/199157,https://id.biodiversity.org.au/taxon/apni/51436847,,Dovyalis caffra,naturalised Elaeocarpus grandis,Elaeocarpus grandis,,Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Elaeocarpus grandis F.Muell.,https://id.biodiversity.org.au/node/apni/2895259,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115772,Elaeocarpus grandis,https://id.biodiversity.org.au/name/apni/115772,https://id.biodiversity.org.au/taxon/apni/51632282,,Elaeocarpus grandis,native Eleocharis pallens,Eleocharis pallens,,Eleocharis,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Eleocharis pallens S.T.Blake,https://id.biodiversity.org.au/node/apni/2899827,https://id.biodiversity.org.au/taxon/apni/51434435,https://id.biodiversity.org.au/name/apni/67140,Eleocharis pallens,https://id.biodiversity.org.au/name/apni/67140,https://id.biodiversity.org.au/taxon/apni/51460154,,Eleocharis pallens,native Endiandra globosa,Endiandra globosa,,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra globosa Maiden & Betche,https://id.biodiversity.org.au/node/apni/2901094,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111780,Endiandra globosa,https://id.biodiversity.org.au/name/apni/111780,https://id.biodiversity.org.au/taxon/apni/51438397,,Endiandra globosa,native Endiandra muelleri,Endiandra muelleri,,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra muelleri Meisn.,https://id.biodiversity.org.au/node/apni/2903619,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111996,Endiandra muelleri,https://id.biodiversity.org.au/name/apni/111996,https://id.biodiversity.org.au/taxon/apni/51438397,,Endiandra muelleri,native Epilobium gunnianum,Epilobium gunnianum,,Epilobium,Onagraceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Epilobium gunnianum Hausskn.,https://id.biodiversity.org.au/node/apni/2903068,https://id.biodiversity.org.au/taxon/apni/51440863,https://id.biodiversity.org.au/name/apni/105579,Epilobium gunnianum,https://id.biodiversity.org.au/name/apni/105579,https://id.biodiversity.org.au/taxon/apni/51440864,,Epilobium gunnianum,native -Eremophila deserti,Eremophila deserti,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,https://id.biodiversity.org.au/taxon/apni/51461527,,Eremophila deserti,native -Eremophila oppositifolia,Eremophila oppositifolia,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,https://id.biodiversity.org.au/taxon/apni/51461527,,Eremophila oppositifolia,native +Eremophila deserti,Eremophila deserti,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,https://id.biodiversity.org.au/taxon/apni/51734003,,Eremophila deserti,native +Eremophila oppositifolia,Eremophila oppositifolia,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,https://id.biodiversity.org.au/taxon/apni/51734003,,Eremophila oppositifolia,native Erigeron conyzoides,Erigeron conyzoides,,Erigeron,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Erigeron conyzoides F.Muell.,https://id.biodiversity.org.au/node/apni/2913579,https://id.biodiversity.org.au/taxon/apni/51432118,https://id.biodiversity.org.au/name/apni/73195,Erigeron conyzoides,https://id.biodiversity.org.au/name/apni/239637,https://id.biodiversity.org.au/taxon/apni/51695393,,Erigeron conyzoides,native Erythroxylum australe,Erythroxylum australe,Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied),Erythroxylum,Erythroxylaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Erythroxylum australe F.Muell.,https://id.biodiversity.org.au/node/apni/2912212,https://id.biodiversity.org.au/node/apni/2919669,https://id.biodiversity.org.au/name/apni/75959,Erythroxylum australe [alternative possible names: Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied)],,https://id.biodiversity.org.au/node/apni/2893375,,Erythroxylum australe,native Escallonia bifida,Escallonia bifida,,Escallonia,Escalloniaceae,species,APC,accepted,Magnoliidae,NSW (naturalised),Escallonia bifida Link & Otto,https://id.biodiversity.org.au/taxon/apni/51435441,https://id.biodiversity.org.au/taxon/apni/51435442,https://id.biodiversity.org.au/name/apni/116602,Escallonia bifida,https://id.biodiversity.org.au/name/apni/116602,https://id.biodiversity.org.au/taxon/apni/51435443,,Escallonia bifida,naturalised -Eucalyptus badjensis,Eucalyptus badjensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus badjensis,native -Eucalyptus camphora,Eucalyptus camphora,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/node/apni/2891665,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus camphora,native -Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus dorrigoensis,native -Eucalyptus yangoura,Eucalyptus globoidea,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus globoidea,native -Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,https://id.biodiversity.org.au/taxon/apni/51702983,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native -Eucalyptus muelleriana,Eucalyptus muelleriana,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus muelleriana,native -Eucalyptus nandewarica,Eucalyptus nandewarica,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus nandewarica,native -Eucalyptus olida,Eucalyptus olida,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus olida,native -Eucalyptus pulverulenta,Eucalyptus pulverulenta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus pulverulenta,native -Eucalyptus recurva,Eucalyptus recurva,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus recurva,native -Eucalyptus rossii,Eucalyptus rossii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus rossii,native -Eucalyptus scias,Eucalyptus scias,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus scias,native -Eucalyptus viminalis,Eucalyptus viminalis,Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus viminalis,native -Eucalyptus youmanii,Eucalyptus youmanii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus youmanii,native +Eucalyptus badjensis,Eucalyptus badjensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus badjensis,native +Eucalyptus camphora,Eucalyptus camphora,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/taxon/apni/51738742,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus camphora,native +Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus dorrigoensis,native +Eucalyptus yangoura,Eucalyptus globoidea,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus globoidea,native +Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,https://id.biodiversity.org.au/taxon/apni/51738744,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native +Eucalyptus muelleriana,Eucalyptus muelleriana,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus muelleriana,native +Eucalyptus nandewarica,Eucalyptus nandewarica,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus nandewarica,native +Eucalyptus olida,Eucalyptus olida,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus olida,native +Eucalyptus pulverulenta,Eucalyptus pulverulenta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus pulverulenta,native +Eucalyptus recurva,Eucalyptus recurva,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus recurva,native +Eucalyptus rossii,Eucalyptus rossii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus rossii,native +Eucalyptus scias,Eucalyptus scias,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus scias,native +Eucalyptus viminalis,Eucalyptus viminalis,Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus viminalis,native +Eucalyptus youmanii,Eucalyptus youmanii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus youmanii,native Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata var. queenslandica,,Euphorbia,Euphorbiaceae,variety,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Euphorbia inappendiculata var. queenslandica Domin,https://id.biodiversity.org.au/node/apni/7200245,https://id.biodiversity.org.au/taxon/apni/51435529,https://id.biodiversity.org.au/name/apni/92612,Euphorbia inappendiculata var. queenslandica,https://id.biodiversity.org.au/name/apni/92612,https://id.biodiversity.org.au/taxon/apni/51442249,Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata,native Exocarpos homalocladus,Exocarpos homalocladus,,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,LHI,Exocarpos homalocladus C.Moore & F.Muell.,https://id.biodiversity.org.au/node/apni/2898548,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58158,Exocarpos homalocladus,https://id.biodiversity.org.au/name/apni/58158,https://id.biodiversity.org.au/taxon/apni/51447154,,Exocarpos homalocladus,native Exocarpos sparteus,Exocarpos sparteus,,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Exocarpos sparteus R.Br.,https://id.biodiversity.org.au/node/apni/2898676,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58330,Exocarpos sparteus,https://id.biodiversity.org.au/name/apni/58330,https://id.biodiversity.org.au/taxon/apni/51447154,,Exocarpos sparteus,native @@ -100,11 +100,11 @@ Geijera salicifolia,Geijera salicifolia,,Geijera,Rutaceae,species,APC,accepted,M Gentiana wingecarribiensis,Gentiana wingecarribiensis,,Gentiana,Gentianaceae,species,APC,accepted,Magnoliidae,NSW,Gentiana wingecarribiensis L.G.Adams,https://id.biodiversity.org.au/node/apni/2915610,https://id.biodiversity.org.au/taxon/apni/51436928,https://id.biodiversity.org.au/name/apni/80378,Gentiana wingecarribiensis,https://id.biodiversity.org.au/name/apni/80378,https://id.biodiversity.org.au/taxon/apni/51436871,,Gentiana wingecarribiensis,native Geranium obtusisepalum,Geranium obtusisepalum,,Geranium,Geraniaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Geranium obtusisepalum Carolin,https://id.biodiversity.org.au/node/apni/2910251,https://id.biodiversity.org.au/taxon/apni/51436946,https://id.biodiversity.org.au/name/apni/82004,Geranium obtusisepalum,https://id.biodiversity.org.au/name/apni/82004,https://id.biodiversity.org.au/taxon/apni/51436947,,Geranium obtusisepalum,native Geranium purpureum subsp. purpureum,Geranium purpureum,,Geranium,Geraniaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised)",Geranium purpureum Vill.,https://id.biodiversity.org.au/node/apni/2919721,https://id.biodiversity.org.au/taxon/apni/51436946,https://id.biodiversity.org.au/name/apni/82353,Geranium purpureum,https://id.biodiversity.org.au/name/apni/82382,https://id.biodiversity.org.au/taxon/apni/51436947,,Geranium purpureum,naturalised -Gompholobium grandiflorum,Gompholobium grandiflorum,,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65291,https://id.biodiversity.org.au/taxon/apni/51702961,,Gompholobium grandiflorum,native +Gompholobium grandiflorum,Gompholobium grandiflorum,,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65305,https://id.biodiversity.org.au/taxon/apni/51702961,,Gompholobium grandiflorum,native Goodenia varia,Goodenia varia,,Goodenia,Goodeniaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Goodenia varia R.Br.,https://id.biodiversity.org.au/node/apni/2910439,https://id.biodiversity.org.au/taxon/apni/51437012,https://id.biodiversity.org.au/name/apni/92079,Goodenia varia,https://id.biodiversity.org.au/name/apni/92079,https://id.biodiversity.org.au/taxon/apni/51462931,,Goodenia varia,native -Gossia bidwillii,Gossia bidwillii,,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,https://id.biodiversity.org.au/taxon/apni/51702983,,Gossia bidwillii,native -Grevillea scortechinii,Grevillea scortechinii,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51445337,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,https://id.biodiversity.org.au/taxon/apni/51614274,,Grevillea scortechinii,native -Hakea macraeana,Hakea macraeana,Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51614274,,Hakea macraeana,native +Gossia bidwillii,Gossia bidwillii,,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,https://id.biodiversity.org.au/taxon/apni/51738744,,Gossia bidwillii,native +Grevillea scortechinii,Grevillea scortechinii,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea scortechinii,native +Hakea macraeana,Hakea macraeana,Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51732901,,Hakea macraeana,native Hemisteptia lyrata,Hemisteptia lyrata,,Hemisteptia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Hemisteptia lyrata (Bunge) Fisch. & C.A.Mey.,https://id.biodiversity.org.au/taxon/apni/51268530,https://id.biodiversity.org.au/taxon/apni/51268531,https://id.biodiversity.org.au/name/apni/230066,Hemisteptia lyrata,https://id.biodiversity.org.au/name/apni/230066,https://id.biodiversity.org.au/taxon/apni/51695393,,Hemisteptia lyrata,native Hibbertia crinita,Hibbertia crinita,,Hibbertia,Dilleniaceae,species,APC,accepted,Magnoliidae,"SA, Vic",Hibbertia crinita Toelken,https://id.biodiversity.org.au/node/apni/2899370,https://id.biodiversity.org.au/taxon/apni/51434912,https://id.biodiversity.org.au/name/apni/170069,Hibbertia crinita,https://id.biodiversity.org.au/name/apni/170069,https://id.biodiversity.org.au/taxon/apni/51434913,,Hibbertia crinita,native Hibiscus brachysiphonius,Hibiscus brachysiphonius,,Hibiscus,Malvaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Hibiscus brachysiphonius F.Muell.,https://id.biodiversity.org.au/node/apni/2891329,https://id.biodiversity.org.au/taxon/apni/51439316,https://id.biodiversity.org.au/name/apni/91736,Hibiscus brachysiphonius,https://id.biodiversity.org.au/name/apni/91736,https://id.biodiversity.org.au/taxon/apni/51439248,,Hibiscus brachysiphonius,native @@ -123,25 +123,25 @@ Lepidium africanum,Lepidium africanum,,Lepidium,Brassicaceae,species,APC,accepte Lepidium foliosum,Lepidium foliosum,,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Lepidium foliosum Desv.,https://id.biodiversity.org.au/node/apni/2908453,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/69389,Lepidium foliosum,https://id.biodiversity.org.au/name/apni/69389,https://id.biodiversity.org.au/taxon/apni/51612687,,Lepidium foliosum,native Lepidium oxytrichum,Lepidium oxytrichum,,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Lepidium oxytrichum Sprague,https://id.biodiversity.org.au/node/apni/2915883,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/84027,Lepidium oxytrichum,https://id.biodiversity.org.au/name/apni/84027,https://id.biodiversity.org.au/taxon/apni/51612687,,Lepidium oxytrichum,native Leptomeria drupacea,Leptomeria drupacea,,Leptomeria,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Leptomeria drupacea (Labill.) Druce,https://id.biodiversity.org.au/node/apni/2892780,https://id.biodiversity.org.au/node/apni/2897704,https://id.biodiversity.org.au/name/apni/61625,Leptomeria drupacea,https://id.biodiversity.org.au/name/apni/61625,https://id.biodiversity.org.au/taxon/apni/51447154,,Leptomeria drupacea,native -Leptospermum continentale,Leptospermum continentale,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,https://id.biodiversity.org.au/taxon/apni/51702983,,Leptospermum continentale,native -Leptospermum obovatum,Leptospermum obovatum,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,https://id.biodiversity.org.au/taxon/apni/51702983,,Leptospermum obovatum,native -Leucopogon amplexicaulis,Leucopogon amplexicaulis,,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,https://id.biodiversity.org.au/taxon/apni/51436079,,Leucopogon amplexicaulis,native +Leptospermum continentale,Leptospermum continentale,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,https://id.biodiversity.org.au/taxon/apni/51738744,,Leptospermum continentale,native +Leptospermum obovatum,Leptospermum obovatum,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,https://id.biodiversity.org.au/taxon/apni/51738744,,Leptospermum obovatum,native +Leucopogon amplexicaulis,Leucopogon amplexicaulis,,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,https://id.biodiversity.org.au/taxon/apni/51738121,,Leucopogon amplexicaulis,native Lobelia pedunculata,Lobelia pedunculata,,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Lobelia pedunculata R.Br.,https://id.biodiversity.org.au/node/apni/2901444,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/106999,Lobelia pedunculata,https://id.biodiversity.org.au/name/apni/106999,https://id.biodiversity.org.au/taxon/apni/51432853,,Lobelia pedunculata,native Lobelia trigonocaulis,Lobelia trigonocaulis,,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Lobelia trigonocaulis F.Muell.,https://id.biodiversity.org.au/node/apni/2901863,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/107808,Lobelia trigonocaulis,https://id.biodiversity.org.au/name/apni/107808,https://id.biodiversity.org.au/taxon/apni/51432853,,Lobelia trigonocaulis,native Lotononis bainesii,Lotononis bainesii,,Lotononis,Fabaceae,species,APC,accepted,Magnoliidae,"Qld (naturalised), NSW (naturalised)",Lotononis bainesii Baker,https://id.biodiversity.org.au/node/apni/2904277,https://id.biodiversity.org.au/node/apni/2898035,https://id.biodiversity.org.au/name/apni/109834,Lotononis bainesii,https://id.biodiversity.org.au/name/apni/109834,https://id.biodiversity.org.au/taxon/apni/51702961,,Lotononis bainesii,naturalised Lotus corniculatus,Lotus corniculatus,Lotus preslii (pro parte misapplied) | Lotus uliginosus (pro parte misapplied),Lotus,Fabaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (formerly naturalised), NSW (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Lotus corniculatus L.,https://id.biodiversity.org.au/node/apni/2921302,https://id.biodiversity.org.au/taxon/apni/51436215,https://id.biodiversity.org.au/name/apni/110319,Lotus corniculatus [alternative possible names: Lotus preslii (pro parte misapplied) | Lotus uliginosus (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Lotus corniculatus,naturalised Lupinus polyphyllus,Lupinus polyphyllus,,Lupinus,Fabaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), Vic (naturalised)",Lupinus polyphyllus Lindl.,https://id.biodiversity.org.au/node/apni/2917429,https://id.biodiversity.org.au/node/apni/2918316,https://id.biodiversity.org.au/name/apni/100609,Lupinus polyphyllus,https://id.biodiversity.org.au/name/apni/100609,https://id.biodiversity.org.au/taxon/apni/51702961,,Lupinus polyphyllus,naturalised Medicago orbicularis,Medicago orbicularis,,Medicago,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (formerly naturalised)",Medicago orbicularis (L.) Bartal.,https://id.biodiversity.org.au/node/apni/2901771,https://id.biodiversity.org.au/taxon/apni/51285690,https://id.biodiversity.org.au/name/apni/59568,Medicago orbicularis,https://id.biodiversity.org.au/name/apni/59568,https://id.biodiversity.org.au/taxon/apni/51702961,,Medicago orbicularis,naturalised -Melichrus procumbens,Melichrus procumbens,,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,https://id.biodiversity.org.au/taxon/apni/51436079,,Melichrus procumbens,native +Melichrus procumbens,Melichrus procumbens,,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,https://id.biodiversity.org.au/taxon/apni/51738121,,Melichrus procumbens,native Mischocarpus australis,Mischocarpus australis,,Mischocarpus,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Mischocarpus australis S.T.Reynolds,https://id.biodiversity.org.au/node/apni/2893744,https://id.biodiversity.org.au/taxon/apni/51389373,https://id.biodiversity.org.au/name/apni/115917,Mischocarpus australis,https://id.biodiversity.org.au/name/apni/115917,https://id.biodiversity.org.au/taxon/apni/51447212,,Mischocarpus australis,native Muehlenbeckia adpressa,Muehlenbeckia adpressa,,Muehlenbeckia,Polygonaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Muehlenbeckia adpressa (Labill.) Meisn.,https://id.biodiversity.org.au/node/apni/4750977,https://id.biodiversity.org.au/taxon/apni/51291654,https://id.biodiversity.org.au/name/apni/107852,Muehlenbeckia adpressa,https://id.biodiversity.org.au/name/apni/107852,https://id.biodiversity.org.au/taxon/apni/51444856,,Muehlenbeckia adpressa,native -Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,https://id.biodiversity.org.au/taxon/apni/51461527,Myoporum boninense subsp. australe,Myoporum boninense,native +Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,https://id.biodiversity.org.au/taxon/apni/51734003,Myoporum boninense subsp. australe,Myoporum boninense,native Nicotiana glauca,Nicotiana glauca,,Nicotiana,Solanaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised)",Nicotiana glauca Graham,https://id.biodiversity.org.au/node/apni/2887606,https://id.biodiversity.org.au/taxon/apni/51447689,https://id.biodiversity.org.au/name/apni/77368,Nicotiana glauca,https://id.biodiversity.org.au/name/apni/77368,https://id.biodiversity.org.au/taxon/apni/51447684,,Nicotiana glauca,naturalised Nicotiana goodspeedii,Nicotiana goodspeedii,,Nicotiana,Solanaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Nicotiana goodspeedii H.-M.Wheeler,https://id.biodiversity.org.au/node/apni/2908652,https://id.biodiversity.org.au/taxon/apni/51447689,https://id.biodiversity.org.au/name/apni/77381,Nicotiana goodspeedii,https://id.biodiversity.org.au/name/apni/77381,https://id.biodiversity.org.au/taxon/apni/51447684,,Nicotiana goodspeedii,native Oxalis corniculata,Oxalis corniculata,,Oxalis,Oxalidaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), ChI (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Oxalis corniculata L.,https://id.biodiversity.org.au/node/apni/2909588,https://id.biodiversity.org.au/taxon/apni/51442068,https://id.biodiversity.org.au/name/apni/89460,Oxalis corniculata,https://id.biodiversity.org.au/name/apni/89460,https://id.biodiversity.org.au/taxon/apni/51442069,,Oxalis corniculata,naturalised Pandorea pandorana subsp. austrocaledonica,Pandorea pandorana,,Pandorea,Bignoniaceae,species,APC,accepted,Magnoliidae,"WA, SA (native and naturalised), Qld, NSW, LHI, NI (presumed extinct), Vic (native and naturalised), Tas",Pandorea pandorana (Andrews) Steenis,https://id.biodiversity.org.au/taxon/apni/51269199,https://id.biodiversity.org.au/taxon/apni/51269200,https://id.biodiversity.org.au/name/apni/91117,Pandorea pandorana,https://id.biodiversity.org.au/name/apni/141640,https://id.biodiversity.org.au/taxon/apni/51439229,,Pandorea pandorana,native and naturalised Paraserianthes lophantha,Paraserianthes lophantha,,Paraserianthes,Fabaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), SA (naturalised), NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Paraserianthes lophantha (Willd.) I.C.Nielsen,https://id.biodiversity.org.au/taxon/apni/51286820,https://id.biodiversity.org.au/taxon/apni/51286819,https://id.biodiversity.org.au/name/apni/116755,Paraserianthes lophantha,https://id.biodiversity.org.au/name/apni/116755,https://id.biodiversity.org.au/taxon/apni/51702961,,Paraserianthes lophantha,native and naturalised -Parentucellia latifolia,Parentucellia latifolia,,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,https://id.biodiversity.org.au/taxon/apni/51291037,,Parentucellia latifolia,naturalised +Parentucellia latifolia,Parentucellia latifolia,,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,https://id.biodiversity.org.au/taxon/apni/51734010,,Parentucellia latifolia,naturalised Hypoxis glabella var. glabella,Pauridia glabella var. glabella,,Pauridia,Hypoxidaceae,variety,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Pauridia glabella (R.Br.) Snijman & Kocyan var. glabella,https://id.biodiversity.org.au/node/apni/7455351,https://id.biodiversity.org.au/taxon/apni/51437983,https://id.biodiversity.org.au/name/apni/244102,Pauridia glabella var. glabella,https://id.biodiversity.org.au/name/apni/81442,https://id.biodiversity.org.au/taxon/apni/51437984,Pauridia glabella var. glabella,Pauridia glabella,native Phlegmatospermum cochlearinum,Phlegmatospermum cochlearinum,,Phlegmatospermum,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Phlegmatospermum cochlearinum (F.Muell.) O.E.Schulz,https://id.biodiversity.org.au/node/apni/2915554,https://id.biodiversity.org.au/node/apni/2897988,https://id.biodiversity.org.au/name/apni/81861,Phlegmatospermum cochlearinum,https://id.biodiversity.org.au/name/apni/81861,https://id.biodiversity.org.au/taxon/apni/51612687,,Phlegmatospermum cochlearinum,native Phyla nodiflora,Phyla nodiflora,,Phyla,Verbenaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), CoI (naturalised), NT, Qld, NSW (naturalised)",Phyla nodiflora (L.) Greene,https://id.biodiversity.org.au/node/apni/2907374,https://id.biodiversity.org.au/node/apni/2892182,https://id.biodiversity.org.au/name/apni/74617,Phyla nodiflora,https://id.biodiversity.org.au/name/apni/74617,https://id.biodiversity.org.au/taxon/apni/51448662,,Phyla nodiflora,native and naturalised @@ -155,14 +155,14 @@ Polycarpon tetraphyllum,Polycarpon tetraphyllum,,Polycarpon,Caryophyllaceae,spec Potamogeton australiensis,Potamogeton australiensis,,Potamogeton,Potamogetonaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Potamogeton australiensis A.Benn.,https://id.biodiversity.org.au/node/apni/7808489,https://id.biodiversity.org.au/node/apni/8770682,https://id.biodiversity.org.au/name/apni/65827,Potamogeton australiensis,https://id.biodiversity.org.au/name/apni/65827,https://id.biodiversity.org.au/taxon/apni/51353530,,Potamogeton australiensis,native Psoralea pinnata,Psoralea pinnata,,Psoralea,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Psoralea pinnata L.,https://id.biodiversity.org.au/node/apni/2887023,https://id.biodiversity.org.au/node/apni/8771698,https://id.biodiversity.org.au/name/apni/88820,Psoralea pinnata,https://id.biodiversity.org.au/name/apni/88820,https://id.biodiversity.org.au/taxon/apni/51702961,,Psoralea pinnata,naturalised Pultenaea ferruginea,Pultenaea ferruginea,,Pultenaea,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Pultenaea ferruginea Rudge,https://id.biodiversity.org.au/node/apni/2906803,https://id.biodiversity.org.au/taxon/apni/51436286,https://id.biodiversity.org.au/name/apni/59158,Pultenaea ferruginea,https://id.biodiversity.org.au/name/apni/59158,https://id.biodiversity.org.au/taxon/apni/51702961,,Pultenaea ferruginea,native -Rhodamnia argentea,Rhodamnia argentea,,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,https://id.biodiversity.org.au/taxon/apni/51702983,,Rhodamnia argentea,native +Rhodamnia argentea,Rhodamnia argentea,,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,https://id.biodiversity.org.au/taxon/apni/51738744,,Rhodamnia argentea,native Rorippa gigantea,Rorippa gigantea,,Rorippa,Brassicaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rorippa gigantea (Hook.) Garn.-Jones,https://id.biodiversity.org.au/node/apni/2920330,https://id.biodiversity.org.au/node/apni/8442201,https://id.biodiversity.org.au/name/apni/75950,Rorippa gigantea,https://id.biodiversity.org.au/name/apni/75950,https://id.biodiversity.org.au/taxon/apni/51612687,,Rorippa gigantea,native -Rubus parvifolius,Rubus parvifolius,,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,https://id.biodiversity.org.au/taxon/apni/51446278,,Rubus parvifolius,native -Salix alba,Salix alba,,Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: NA],,https://id.biodiversity.org.au/taxon/apni/51436847,,Salix alba,naturalised +Rubus parvifolius,Rubus parvifolius,,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,https://id.biodiversity.org.au/taxon/apni/51737985,,Rubus parvifolius,native +Salix alba,Salix alba,Salix x fragilis nothovar. fragilis (pro parte misapplied),Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: Salix x fragilis nothovar. fragilis (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51436847,,Salix alba,naturalised Schenkia australis,Schenkia australis,,Schenkia,Gentianaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic, Tas",Schenkia australis (R.Br.) G.Mans.,https://id.biodiversity.org.au/taxon/apni/51436897,https://id.biodiversity.org.au/taxon/apni/51436898,https://id.biodiversity.org.au/name/apni/200895,Schenkia australis,https://id.biodiversity.org.au/name/apni/200895,https://id.biodiversity.org.au/taxon/apni/51436871,,Schenkia australis,native Schoenus apogon,Schoenus apogon,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Schoenus apogon Roem. & Schult.,https://id.biodiversity.org.au/node/apni/2908439,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109452,Schoenus apogon,https://id.biodiversity.org.au/name/apni/109452,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus apogon,native Schoenus brevifolius,Schoenus brevifolius,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Schoenus brevifolius R.Br.,https://id.biodiversity.org.au/node/apni/2904000,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109778,Schoenus brevifolius,https://id.biodiversity.org.au/name/apni/109778,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus brevifolius,native -Schoenus lepidosperma,Schoenus lepidosperma,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/243667,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus lepidosperma,native +Schoenus lepidosperma,Schoenus lepidosperma,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/141376,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus lepidosperma,native Schoenus vaginatus,Schoenus vaginatus,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Schoenus vaginatus F.Muell. ex Benth.,https://id.biodiversity.org.au/node/apni/2896591,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/113246,Schoenus vaginatus,https://id.biodiversity.org.au/name/apni/113246,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus vaginatus,native Scleria rugosa,Scleria rugosa,,Scleria,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Scleria rugosa R.Br.,https://id.biodiversity.org.au/node/apni/2892143,https://id.biodiversity.org.au/taxon/apni/51434752,https://id.biodiversity.org.au/name/apni/64346,Scleria rugosa,https://id.biodiversity.org.au/name/apni/64346,https://id.biodiversity.org.au/taxon/apni/51460154,,Scleria rugosa,native Senecio longipilus,Senecio longipilus,,Senecio,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Tas",Senecio longipilus I.Thomps.,https://id.biodiversity.org.au/node/apni/2907653,https://id.biodiversity.org.au/taxon/apni/51614245,https://id.biodiversity.org.au/name/apni/189666,Senecio longipilus,https://id.biodiversity.org.au/name/apni/189666,https://id.biodiversity.org.au/taxon/apni/51695393,,Senecio longipilus,native @@ -174,10 +174,10 @@ Sparaxis bulbifera,Sparaxis bulbifera,,Sparaxis,Iridaceae,species,APC,accepted,M Spergularia diandra,Spergularia diandra,,Spergularia,Caryophyllaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised)",Spergularia diandra (Guss.) Heldr.,https://id.biodiversity.org.au/node/apni/2886696,https://id.biodiversity.org.au/taxon/apni/51295406,https://id.biodiversity.org.au/name/apni/83464,Spergularia diandra,https://id.biodiversity.org.au/name/apni/83464,https://id.biodiversity.org.au/taxon/apni/51432987,,Spergularia diandra,naturalised Sphaeromorphaea littoralis,Sphaeromorphaea littoralis,,Sphaeromorphaea,Asteraceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Sphaeromorphaea littoralis (Retz.) A.R.Bean,https://id.biodiversity.org.au/node/apni/7069871,https://id.biodiversity.org.au/node/apni/7071683,https://id.biodiversity.org.au/name/apni/246779,Sphaeromorphaea littoralis,https://id.biodiversity.org.au/name/apni/246779,https://id.biodiversity.org.au/taxon/apni/51695393,,Sphaeromorphaea littoralis,native Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia subsp. angustifolia,,Stellaria,Caryophyllaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Stellaria angustifolia Hook. subsp. angustifolia,https://id.biodiversity.org.au/node/apni/2890520,https://id.biodiversity.org.au/taxon/apni/51433015,https://id.biodiversity.org.au/name/apni/240421,Stellaria angustifolia subsp. angustifolia,https://id.biodiversity.org.au/name/apni/240421,https://id.biodiversity.org.au/taxon/apni/51432987,Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia,native -Styphelia viridis,Styphelia viridis,,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,https://id.biodiversity.org.au/taxon/apni/51436079,,Styphelia viridis,native +Styphelia viridis,Styphelia viridis,,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,https://id.biodiversity.org.au/taxon/apni/51738121,,Styphelia viridis,native Swainsona cadellii,Swainsona cadellii,,Swainsona,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Swainsona cadellii F.Muell. ex C.Moore,https://id.biodiversity.org.au/node/apni/2904099,https://id.biodiversity.org.au/taxon/apni/51436313,https://id.biodiversity.org.au/name/apni/76870,Swainsona cadellii,https://id.biodiversity.org.au/name/apni/76870,https://id.biodiversity.org.au/taxon/apni/51702961,,Swainsona cadellii,native Teucrium puberulum,Teucrium puberulum,,Teucrium,Lamiaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Teucrium puberulum (F.Muell.) Kattari & Bräuchler,https://id.biodiversity.org.au/taxon/apni/51288087,https://id.biodiversity.org.au/taxon/apni/51438311,https://id.biodiversity.org.au/name/apni/7660439,Teucrium puberulum,https://id.biodiversity.org.au/name/apni/7660439,https://id.biodiversity.org.au/taxon/apni/51696573,,Teucrium puberulum,native -Thelymitra kangaloonica,Thelymitra kangaloonica,,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,https://id.biodiversity.org.au/taxon/apni/51697009,,Thelymitra kangaloonica,native +Thelymitra kangaloonica,Thelymitra kangaloonica,,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,https://id.biodiversity.org.au/taxon/apni/51727417,,Thelymitra kangaloonica,native Thesium australe,Thesium australe,,Thesium,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas (presumed extinct)",Thesium australe R.Br.,https://id.biodiversity.org.au/node/apni/2891975,https://id.biodiversity.org.au/node/apni/2913858,https://id.biodiversity.org.au/name/apni/56224,Thesium australe,https://id.biodiversity.org.au/name/apni/56224,https://id.biodiversity.org.au/taxon/apni/51447154,,Thesium australe,native Trifolium dubium,Trifolium dubium,,Trifolium,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), LHI (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Trifolium dubium Sibth.,https://id.biodiversity.org.au/taxon/apni/51436351,https://id.biodiversity.org.au/taxon/apni/51436341,https://id.biodiversity.org.au/name/apni/115704,Trifolium dubium,https://id.biodiversity.org.au/name/apni/115704,https://id.biodiversity.org.au/taxon/apni/51702961,,Trifolium dubium,naturalised Veronica catenata,Veronica catenata,,Veronica,Plantaginaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), Vic (naturalised)",Veronica catenata Pennell,https://id.biodiversity.org.au/node/apni/2897164,https://id.biodiversity.org.au/taxon/apni/51632390,https://id.biodiversity.org.au/name/apni/67965,Veronica catenata,https://id.biodiversity.org.au/name/apni/67965,https://id.biodiversity.org.au/taxon/apni/51699383,,Veronica catenata,naturalised diff --git a/tests/testthat/examples/Test_2023_4/metadata.yml b/tests/testthat/examples/Test_2023_4/metadata.yml index a3d9f303..ab1c1486 100644 --- a/tests/testthat/examples/Test_2023_4/metadata.yml +++ b/tests/testthat/examples/Test_2023_4/metadata.yml @@ -144,42 +144,12 @@ contexts: description: Trait value inferred from genus-level taxon description. - value: inferred_from_family description: Trait value inferred from family-level taxon description. - - value: inferred_from_trait - description: Trait value inferred from the value of a different trait. - - value: inferred_from_taxonomy - description: Trait value inferred from a higher level taxon description. - context_property: entity measured category: entity_context var_in: entity_measured values: - value: unknown - - value: leaflet - - value: pinnae - - value: all - value: fruit - - value: infructescence - - value: valve - - value: female_cones - - value: disc_achenes - - value: ray_achenes - - value: leaf - - value: fertile_leaf - - value: sterile_leaf - - value: cauline_leaf - - value: basal_leaf - - value: upper_leaf - - value: stem_leaf - - value: basal_pinnae - - value: phyllode - - value: cladode - - value: fertile_pinnule - - value: sterile_pinnule - - value: lower_leaf - - value: lateral_leaf - - value: emergent_leaf - - value: submerged_leaf - - value: upper_pinnae - - value: scale_leaf traits: - var_in: fruit_colour trait_name: fruit_colour @@ -190,6 +160,7 @@ traits: at maturity or the dominant colours of the fruit exterior were scored. If neither were specified, all colours associated with the fruit were scored. basis_of_record: test_basis_of_record + basis_of_value: test_basis_of_value - var_in: fruit_dehiscence unit_in: .na trait_name: fruit_dehiscence @@ -198,6 +169,7 @@ traits: methods: Taxa were scored as dehiscent from a variety of terms in the text including the kind of dehiscence e.g. scepticidal, loculicidal or possessing valves. basis_of_record: test_basis_of_record + basis_of_value: test_basis_of_value life_stage: adult measurement_remarks: measurement_remarks_fruit_dehiscence - var_in: fruit_length @@ -217,6 +189,7 @@ traits: methods: The term used to describe the fruit width was stored as a measurement remark for greater clarity e.g. fruit, achene, capsule. Fruits which were spherical or round in shape were inferred as possessing the same dimensions in other planes. + basis_of_value: test_basis_of_value - var_in: fruit_width_2 trait_name: fruit_width value_type: value_type @@ -224,6 +197,7 @@ traits: methods: The term used to describe the fruit width was stored as a measurement remark for greater clarity e.g. fruit, achene, capsule. Fruits which were spherical or round in shape were inferred as possessing the same dimensions in other planes. + basis_of_value: test_basis_of_value - var_in: leaf_photosynthesis unit_in: umol/m2/s trait_name: leaf_photosynthesis @@ -251,393 +225,6 @@ traits: column. replicates: 5 substitutions: .na -taxonomic_updates: -- find: Acaena anserovina - replace: Acaena x anserovina - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Acaena ovina - replace: Acaena x ovina - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Acaena sp. Thredbo River Gorge (L.A.S.Johnson ;amp; E.F.Constable s.n., 19 - Jan 1951) - replace: Acaena sp. Thredbo River Gorge (L.A.S.Johnson & E.F.Constable s.n., 19 - Jan 1951) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: species -- find: Alstonia constricta f. Pubescent form - replace: Alstonia constricta Pubescent form - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: species -- find: Arthropteris beckleri x tenella - replace: Arthropteris x [Arthropteris beckleri x tenella; NHNSW_2022] - reason: match_11. Rewording hybrid species name not in APC or APNI to indicate a - genus-level alignment with APC accepted genus (2022-11-22) - taxonomic_resolution: genus -- find: Atriplex sp. B sensu Jacobs (1990) - replace: Atriplex sp. B - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Banksia spinulosa var. collina-spinulosa intergrade - replace: Banksia spinulosa var. collina - reason: match_12. Automatic alignment with infraspecific canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: variety -- find: Bertya tasmanica variant ;qu;Glabrous ovary;qu; - replace: Bertya tasmanica var. Glabrous ovary (T.A.James 527 & M.J.Taylor) - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: variety -- find: Blechnum fullagarii - replace: Blechnum fullagari - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Caladenia sp. A sensu Harden (1993) - replace: Caladenia sp. A - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Centaurea sp. A sensu Murray (1992) - replace: Centaurea sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Cephalomanes atrovirens subsp. atrovirens - replace: Cephalomanes atrovirens - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 ;amp; T.R.Lally) - replace: Choretrum sp. Coxs Gap (B.J.Lepschi 4218 & T.R.Lally) - reason: match_10_fuzzy. Imprecise fuzzy alignment with accepted canonical name in - APC (2022-11-21) - taxonomic_resolution: species -- find: Cipadessa baccifera - replace: Cipadessa baccifera - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Crocosmia crocosmiiflora - replace: Crocosmia x crocosmiiflora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Cyperus bowmannii - replace: Cyperus bowmanni - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Cyperus sp. Stockton (K.L.Wilson 10541) - replace: Cyperus sp. [Cyperus sp. Stockton (K.L.Wilson 10541); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Dillwynia sp. Ebor (P.C.Jobson 5318 ;amp; S.A.Mills) - replace: Dillwynia sp. Ebor (P.C.Jobson 5318 & S.A.Mills) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-21) - taxonomic_resolution: species -- find: Epidendrum radicans x secundum hybrid complex - replace: Epidendrum radicans x Epidendrum secundum - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Eriochilus cucullatus complex - replace: Eriochilus cucullatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Eucalyptus conjuncta - replace: Eucalyptus x conjuncta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Eucalyptus dealbata subsp. dealbata - replace: Eucalyptus dealbata var. dealbata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Flacourtia sp. shiptons flat l w jessup gj.d3200 - replace: Flacourtia sp. Shiptons Flat (L.W.Jessup+ GJD3200) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Genoplesium cuspidatum - replace: Genoplesium sp. Cuspidata (L.M.Copeland 3858) - reason: match_15_fuzzy. Fuzzy match alignment with species-level canonical name - in `APC known` when everything except first 2 words ignored (2022-11-22) - taxonomic_resolution: species -- find: Genoplesium sp. Charmhaven (NSW896673) - replace: Genoplesium sp. Charmhaven (NSW 896673) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Glycine pacifica - replace: Glycine pacifica (Grace 946) - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Hibbertia sp. B sensu Harden (1990) - replace: Hibbertia sp. B - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Hibbertia stricta subsp. stricta - replace: Hibbertia stricta var. stricta - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Hoffmannseggia glauca - replace: Hoffmannseggia glauca - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Houttuynia cordata - replace: Houttuynia cordata - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Impatiens balfouri - replace: Impatiens balfourii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Kunzea capitata subsp. capitata - replace: Kunzea capitata var. capitata - reason: match_06. Automatic alignment with synonymous term among known canonical - names APC (2022-11-21) - taxonomic_resolution: variety -- find: Lenwebbia sp. Main Range (P.R.Sharpe 4877) - replace: Lenwebbia sp. Main Range (P.R.Sharpe+ 4877) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Lepidium sp. Cooma (J.H.Maiden NSW642748) - replace: Lepidium sp. [Lepidium sp. Cooma (J.H.Maiden NSW642748); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Leucopogon lanceolatus var. lanceolatus - replace: Leucopogon lanceolatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Luzula densiflora subsp. densiflora - replace: Luzula densiflora - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Luzula flaccida subsp. flaccida - replace: Leucas flaccida var. flaccida - reason: match_10_fuzzy. Imprecise fuzzy alignment with known canonical name in APC - (2022-11-21) - taxonomic_resolution: variety -- find: Margyricarpus pinnatus - replace: Margyricarpus pinnatus - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) Makinson - replace: Muehlenbeckia diclina subsp. Gippsland (R.O.Makinson 1007) - reason: match_05. Automatic alignment with scientific name in APC accepted list - (2022-11-21) - taxonomic_resolution: subspecies -- find: Muehlenbeckia diclina subsp. Pooncarie (W.E. Mulham W811) - replace: Muehlenbeckia diclina subsp. Pooncarie (W.E.Mulham W811) - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-21) - taxonomic_resolution: subspecies -- find: Myosotis laxa subsp. caespitosa - replace: Myosotis laxa subsp. cespitosa - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: subspecies -- find: Netrostylis sp. East Coast (D.E. Albrecht 597) - replace: Netrostylis sp. [Netrostylis sp. East Coast (D.E. Albrecht 597); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus in APNI - (2022-11-22) - taxonomic_resolution: genus -- find: Notelaea sp. A sensu Harden (1992) - replace: Notelaea sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Opuntia sp. sensu I.Telford (1984) - replace: Opuntia sp. [Opuntia sp. sensu I.Telford (1984); NHNSW_2022] - reason: match_20. Rewording name to be recognised as genus rank, with genus accepted - by APC (2022-11-22) - taxonomic_resolution: genus -- find: Owenia reliqua - replace: Owenia x reliqua - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Pelargonium asperum - replace: Pelargonium x asperum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Pimelea neo-anglica - replace: Pimelea neoanglica - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-22) - taxonomic_resolution: species -- find: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) Vic. Herbarium - replace: Polyscias sambucifolia subsp. Long leaflets (P.G.Neish 208) - reason: match_05. Automatic alignment with scientific name in APC accepted list - (2022-11-21) - taxonomic_resolution: subspecies -- find: Pomaderris andromedifolia f. ;qu;andromedifolia;qu; - replace: Pomaderris andromedifolia subsp. andromedifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: subspecies -- find: Pomaderris andromedifolia f. ;qu;narrow-leaved;qu; - replace: Pomaderris andromedifolia f. 'narrow-leaved' - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: form -- find: Pomaderris andromedifolia f. ;qu;small-leaved;qu; - replace: Pomaderris andromedifolia subsp. andromedifolia - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-21) - taxonomic_resolution: subspecies -- find: Potamogeton tricarinatus auct. non F.Muell. ;amp; A.Benn. ex A.Benn. - replace: Potamogeton tricarinatus - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Prasophyllum sp. A sensu Harden (1993) - replace: Prasophyllum sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 ;amp; J.M.Cohen) - replace: Pultenaea sp. Dingo Creek (M.A.M.Renner 9176 & J.M.Cohen) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Narrabri (R.G.Coveny 8811 ;amp; S.K.Roy) - replace: Pultenaea sp. (Narrabri R.G.Coveny+ 8811) - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Newnes (I.R.Telford 5072 ;amp; M.D.Crisp) - replace: Pultenaea sp. Newnes (I.R.Telford 5072 & M.D.Crisp) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Pultenaea sp. Shadowgraph Bluff (T. ;amp; J.Whaite 3455) - replace: Pultenaea sp. Shadowgraph Bluff (T. & J.Whaite 3455) - reason: match_17_fuzzy. Imprecise fuzzy alignment with canonical name in APNI (2022-11-22) - taxonomic_resolution: species -- find: Quassia sp. Moonee Creek (King s.n., Nov 1949) - replace: Quassia sp. 'Moonee Creek' (King s.n., Nov 1949) - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Radermachera sinica - replace: Radermachera sinica - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Rotheca myricoides subsp. myricoides - replace: Rotheca myricoides - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Rubus loganobaccus - replace: Rubus loganubaccus - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Salix matsudana x alba - replace: Salix matsudana x Salix alba - reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, - 2022-11-21) - taxonomic_resolution: species -- find: Salix x fragilis var. fragilis - replace: Salix x fragilis - reason: Manual alignment with canonical hybrid species name in APC (Elizabeth Wenk, - 2022-11-21) - taxonomic_resolution: species -- find: Salix x sepulcralis var. chrysocoma - replace: Salix x sepulcralis - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: species -- find: Salix x sepulcralis var. sepulcralis - replace: Salix x sepulcralis - reason: Manual alignment with canonical species name in APC (Elizabeth Wenk, 2022-11-22) - taxonomic_resolution: variety -- find: Salvinia molesta - replace: Salvinia x molesta - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Sarcocornia quinqueflora subsp. quinqueflora - replace: Salicornia quinqueflora subsp. quinqueflora - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: subspecies -- find: Scleranthus sp. Fitz;qu;s Hill (J.G.West 5342) - replace: Scleranthus sp. Fitz's Hill (J.G.West 5342) - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Sebaea zeyheri subsp. cleistantha - replace: Sebaea zeyheri - reason: match_19. Automatic alignment with species-level canonical name in APNI - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sida sp. B sensu Harden (1990) - replace: Sida sp. B - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sida sp. C sensu Harden (1990) - replace: Sida sp. C - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Sorghum almum - replace: Sorghum x almum - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Sorghum bicolor subsp. almum - replace: Sorghum bicolor subsp. x almum - reason: match_08. Automatic alignment with synonymous name in APNI (2022-11-22) - taxonomic_resolution: subspecies -- find: Sorghum bicolor subsp. drummondii - replace: Sorghum bicolor subsp. x drummondii - reason: match_12. Automatic alignment with infraspecific canonical name in APC known - names when notes are ignored (2022-11-22) - taxonomic_resolution: subspecies -- find: Spiraea x billiardii - replace: Spiraea x billardii - reason: match_07_fuzzy. Fuzzy alignment with accepted canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Suaeda sp. A sensu Harden (1990) - replace: Suaeda sp. A - reason: match_14. Automatic alignment with species-level name known by APC when - notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Teucrium sp. D sensu Conn (1992) - replace: Teucrium sp. D Flora of New South Wales (S.A.Horton 4114) - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-22) - taxonomic_resolution: species -- find: Thelymitra irregularis - replace: Thelymitra x irregularis - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: Thelymitra merraniae - replace: Thelymitra merranae - reason: match_07_fuzzy. Fuzzy alignment with known canonical name in APC (2022-11-21) - taxonomic_resolution: species -- find: Thelymitra truncata - replace: Thelymitra x truncata - reason: match_14. Automatic alignment with species-level canonical name in APC accepted - when notes are ignored (2022-11-21) - taxonomic_resolution: species -- find: X Triticosecale - replace: x Triticosecale - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2022-11-22) - taxonomic_resolution: genus -- find: Acacia melvillei-homalophylla - replace: Acacia sp. [Acacia melvillei-homalophylla; NHNSW_2023] - reason: Manual matched to genus for taxon that can't be matched to species (Elizabeth - Wenk, 2023-05-24) - taxonomic_resolution: genus -exclude_observations: -- variable: taxon_name - find: Salix humboldtiana cv. ;qu;Pyramidalis;qu;, Salix matsudana cv. ;qu;Tortuosa;qu;, - Cyrtomium falcatum ;qu;Rochfordii;qu; - reason: excluding cultivars -- variable: taxon_name - find: Cipadessa baccifera, Hoffmannseggia glauca, Houttuynia cordata, Margyricarpus - pinnatus, Radermachera sinica, x Triticosecale, Euryops virgineus, Fraxinus chinensis, - Ipomoea fimbriosepala, Persicaria chinensis, Pteris nipponica, Passiflora miniata - reason: non-native, non-naturalised species +taxonomic_updates: .na +exclude_observations: .na questions: .na diff --git a/tests/testthat/examples/Test_2023_4/output/contexts.csv b/tests/testthat/examples/Test_2023_4/output/contexts.csv index 9385c35d..11a524f7 100644 --- a/tests/testthat/examples/Test_2023_4/output/contexts.csv +++ b/tests/testthat/examples/Test_2023_4/output/contexts.csv @@ -3,33 +3,5 @@ Test_2023_4,trait scoring method,method_context,scored from text,Trait value sco Test_2023_4,trait scoring method,method_context,inferred_from_species,Trait value inferred from species-level taxon description.,method_context_id,03 Test_2023_4,trait scoring method,method_context,inferred_from_genus,Trait value inferred from genus-level taxon description.,method_context_id,02 Test_2023_4,trait scoring method,method_context,inferred_from_family,Trait value inferred from family-level taxon description.,method_context_id,01 -Test_2023_4,trait scoring method,method_context,inferred_from_trait,Trait value inferred from the value of a different trait.,, -Test_2023_4,trait scoring method,method_context,inferred_from_taxonomy,Trait value inferred from a higher level taxon description.,, Test_2023_4,entity measured,entity_context,unknown,,entity_context_id,02 -Test_2023_4,entity measured,entity_context,leaflet,,, -Test_2023_4,entity measured,entity_context,pinnae,,, -Test_2023_4,entity measured,entity_context,all,,, Test_2023_4,entity measured,entity_context,fruit,,entity_context_id,01 -Test_2023_4,entity measured,entity_context,infructescence,,, -Test_2023_4,entity measured,entity_context,valve,,, -Test_2023_4,entity measured,entity_context,female_cones,,, -Test_2023_4,entity measured,entity_context,disc_achenes,,, -Test_2023_4,entity measured,entity_context,ray_achenes,,, -Test_2023_4,entity measured,entity_context,leaf,,, -Test_2023_4,entity measured,entity_context,fertile_leaf,,, -Test_2023_4,entity measured,entity_context,sterile_leaf,,, -Test_2023_4,entity measured,entity_context,cauline_leaf,,, -Test_2023_4,entity measured,entity_context,basal_leaf,,, -Test_2023_4,entity measured,entity_context,upper_leaf,,, -Test_2023_4,entity measured,entity_context,stem_leaf,,, -Test_2023_4,entity measured,entity_context,basal_pinnae,,, -Test_2023_4,entity measured,entity_context,phyllode,,, -Test_2023_4,entity measured,entity_context,cladode,,, -Test_2023_4,entity measured,entity_context,fertile_pinnule,,, -Test_2023_4,entity measured,entity_context,sterile_pinnule,,, -Test_2023_4,entity measured,entity_context,lower_leaf,,, -Test_2023_4,entity measured,entity_context,lateral_leaf,,, -Test_2023_4,entity measured,entity_context,emergent_leaf,,, -Test_2023_4,entity measured,entity_context,submerged_leaf,,, -Test_2023_4,entity measured,entity_context,upper_pinnae,,, -Test_2023_4,entity measured,entity_context,scale_leaf,,, diff --git a/tests/testthat/examples/Test_2023_4/output/taxa.csv b/tests/testthat/examples/Test_2023_4/output/taxa.csv index 7e850333..ebc83dea 100644 --- a/tests/testthat/examples/Test_2023_4/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_4/output/taxa.csv @@ -1,7 +1,7 @@ original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means Abildgaardia ovata,Abildgaardia ovata,,Abildgaardia,Cyperaceae,species,APC,accepted,Magnoliidae,"NT, Qld, NSW",Abildgaardia ovata (Burm.f.) Kral,https://id.biodiversity.org.au/node/apni/2919627,https://id.biodiversity.org.au/node/apni/2905759,https://id.biodiversity.org.au/name/apni/150737,Abildgaardia ovata,https://id.biodiversity.org.au/name/apni/150737,https://id.biodiversity.org.au/taxon/apni/51460154,,Abildgaardia ovata,native Acacia alpina,Acacia alpina,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Acacia alpina F.Muell.,https://id.biodiversity.org.au/node/apni/2907301,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58263,Acacia alpina,https://id.biodiversity.org.au/name/apni/58263,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia alpina,native -Acacia beadleana,Acacia beadleana,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/165277,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia beadleana,native +Acacia beadleana,Acacia beadleana,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia beadleana R.H.Jones & J.J.Bruhl,https://id.biodiversity.org.au/node/apni/2902581,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/198624,Acacia beadleana,https://id.biodiversity.org.au/name/apni/244690,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia beadleana,native Acacia bulgaensis,Acacia bulgaensis,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Acacia bulgaensis Tindale & S.J.Davies,https://id.biodiversity.org.au/node/apni/2889179,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/117995,Acacia bulgaensis,https://id.biodiversity.org.au/name/apni/117995,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia bulgaensis,native Acacia caroleae,Acacia caroleae,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia caroleae Pedley,https://id.biodiversity.org.au/node/apni/2894332,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/60225,Acacia caroleae,https://id.biodiversity.org.au/name/apni/60225,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia caroleae,native Acacia crassa,Acacia crassa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Acacia crassa Pedley,https://id.biodiversity.org.au/node/apni/2919707,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/60887,Acacia crassa,https://id.biodiversity.org.au/name/apni/60887,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia crassa,native @@ -19,16 +19,16 @@ Alectryon coriaceus,Alectryon coriaceus,,Alectryon,Sapindaceae,species,APC,accep Alectryon oleifolius,Alectryon oleifolius,,Alectryon,Sapindaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Alectryon oleifolius (Desf.) S.T.Reynolds,https://id.biodiversity.org.au/node/apni/2900874,https://id.biodiversity.org.au/taxon/apni/51299789,https://id.biodiversity.org.au/name/apni/81066,Alectryon oleifolius,https://id.biodiversity.org.au/name/apni/81066,https://id.biodiversity.org.au/taxon/apni/51447212,,Alectryon oleifolius,native Alectryon subdentatus,Alectryon subdentatus,,Alectryon,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alectryon subdentatus (F.Muell. ex Benth.) Radlk.,https://id.biodiversity.org.au/node/apni/2890534,https://id.biodiversity.org.au/taxon/apni/51299789,https://id.biodiversity.org.au/name/apni/81114,Alectryon subdentatus,https://id.biodiversity.org.au/name/apni/81114,https://id.biodiversity.org.au/taxon/apni/51447212,,Alectryon subdentatus,native Amyema preissii,Amyema preissii,,Amyema,Loranthaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Amyema preissii (Miq.) Tiegh.,https://id.biodiversity.org.au/node/apni/2888430,https://id.biodiversity.org.au/taxon/apni/51438795,https://id.biodiversity.org.au/name/apni/87461,Amyema preissii,https://id.biodiversity.org.au/name/apni/87461,https://id.biodiversity.org.au/taxon/apni/51438796,,Amyema preissii,native -Angophora leiocarpa,Angophora leiocarpa,,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,https://id.biodiversity.org.au/taxon/apni/51702983,,Angophora leiocarpa,native -Arbutus unedo,Arbutus unedo,,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,https://id.biodiversity.org.au/taxon/apni/51436079,,Arbutus unedo,naturalised +Angophora leiocarpa,Angophora leiocarpa,,Angophora,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Angophora leiocarpa (L.A.S.Johnson ex G.J.Leach) K.R.Thiele & Ladiges,https://id.biodiversity.org.au/node/apni/2894339,https://id.biodiversity.org.au/taxon/apni/51439560,https://id.biodiversity.org.au/name/apni/123435,Angophora leiocarpa,https://id.biodiversity.org.au/name/apni/123435,https://id.biodiversity.org.au/taxon/apni/51738744,,Angophora leiocarpa,native +Arbutus unedo,Arbutus unedo,,Arbutus,Ericaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (doubtfully naturalised), NSW (doubtfully naturalised), ACT (doubtfully naturalised), Vic (naturalised), Tas (doubtfully naturalised)",Arbutus unedo L.,https://id.biodiversity.org.au/node/apni/2904939,https://id.biodiversity.org.au/node/apni/2892910,https://id.biodiversity.org.au/name/apni/98540,Arbutus unedo,https://id.biodiversity.org.au/name/apni/98540,https://id.biodiversity.org.au/taxon/apni/51738121,,Arbutus unedo,naturalised Australina pusilla,Australina pusilla,,Australina,Urticaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas",Australina pusilla (Poir.) Gaudich.,https://id.biodiversity.org.au/node/apni/2913845,https://id.biodiversity.org.au/node/apni/2907879,https://id.biodiversity.org.au/name/apni/113875,Australina pusilla,https://id.biodiversity.org.au/name/apni/113875,https://id.biodiversity.org.au/taxon/apni/51662052,,Australina pusilla,native Burmannia disticha,Burmannia disticha,,Burmannia,Burmanniaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Burmannia disticha L.,https://id.biodiversity.org.au/node/apni/2900088,https://id.biodiversity.org.au/node/apni/2915743,https://id.biodiversity.org.au/name/apni/70173,Burmannia disticha,https://id.biodiversity.org.au/name/apni/70173,https://id.biodiversity.org.au/node/apni/2887196,,Burmannia disticha,native Bursaria spinosa subsp. spinosa,Bursaria spinosa subsp. spinosa,,Bursaria,Pittosporaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, Vic, Tas",Bursaria spinosa Cav. subsp. spinosa,https://id.biodiversity.org.au/taxon/apni/51442337,https://id.biodiversity.org.au/taxon/apni/51442339,https://id.biodiversity.org.au/name/apni/142036,Bursaria spinosa subsp. spinosa,https://id.biodiversity.org.au/name/apni/142036,https://id.biodiversity.org.au/taxon/apni/51442315,Bursaria spinosa subsp. spinosa,Bursaria spinosa,native Calendula arvensis,Calendula arvensis,,Calendula,Asteraceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Calendula arvensis L.,https://id.biodiversity.org.au/node/apni/2891878,https://id.biodiversity.org.au/node/apni/2893748,https://id.biodiversity.org.au/name/apni/95042,Calendula arvensis,https://id.biodiversity.org.au/name/apni/95042,https://id.biodiversity.org.au/taxon/apni/51695393,,Calendula arvensis,naturalised -Callistemon purpurascens,Callistemon purpurascens,,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,https://id.biodiversity.org.au/taxon/apni/51702983,,Callistemon purpurascens,native +Callistemon purpurascens,Callistemon purpurascens,,Callistemon,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Callistemon purpurascens S.M.Douglas & S.David,https://id.biodiversity.org.au/taxon/apni/51288952,https://id.biodiversity.org.au/taxon/apni/51439657,https://id.biodiversity.org.au/name/apni/4630985,Callistemon purpurascens,https://id.biodiversity.org.au/name/apni/4630985,https://id.biodiversity.org.au/taxon/apni/51738744,,Callistemon purpurascens,native Apophyllum anomalum,Capparis anomala,,Capparis,Capparaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Capparis anomala (F.Muell.) Byng & Christenh.,https://id.biodiversity.org.au/taxon/apni/51432888,https://id.biodiversity.org.au/taxon/apni/51432886,https://id.biodiversity.org.au/name/apni/50561973,Capparis anomala,https://id.biodiversity.org.au/name/apni/97697,https://id.biodiversity.org.au/taxon/apni/51433682,,Capparis anomala,native Carex leporina,Carex leporina,,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Carex leporina L.,https://id.biodiversity.org.au/node/apni/2902492,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/135236,Carex leporina,https://id.biodiversity.org.au/name/apni/135236,https://id.biodiversity.org.au/taxon/apni/51460154,,Carex leporina,naturalised -Carex cephalotes,Carex pyrenaica var. cephalotes,,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/110600,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native +Carex cephalotes,Carex pyrenaica var. cephalotes,,Carex,Cyperaceae,variety,APC,accepted,Magnoliidae,"NSW, Vic, Tas",Carex pyrenaica var. cephalotes (F.Muell.) Kük.,https://id.biodiversity.org.au/node/apni/2892693,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111655,Carex pyrenaica var. cephalotes,https://id.biodiversity.org.au/name/apni/235569,https://id.biodiversity.org.au/taxon/apni/51460154,Carex pyrenaica var. cephalotes,Carex pyrenaica,native Carex raleighii,Carex raleighii,,Carex,Cyperaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Carex raleighii Nelmes,https://id.biodiversity.org.au/node/apni/2910405,https://id.biodiversity.org.au/taxon/apni/51460185,https://id.biodiversity.org.au/name/apni/111690,Carex raleighii,https://id.biodiversity.org.au/name/apni/111690,https://id.biodiversity.org.au/taxon/apni/51460154,,Carex raleighii,native Carmichaelia exsul,Carmichaelia exsul,,Carmichaelia,Fabaceae,species,APC,accepted,Magnoliidae,LHI,Carmichaelia exsul F.Muell.,https://id.biodiversity.org.au/node/apni/2915240,https://id.biodiversity.org.au/node/apni/8138105,https://id.biodiversity.org.au/name/apni/112335,Carmichaelia exsul,https://id.biodiversity.org.au/name/apni/112335,https://id.biodiversity.org.au/taxon/apni/51702961,,Carmichaelia exsul,native Cassinia compacta,Cassinia compacta,Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied),Cassinia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cassinia compacta F.Muell.,https://id.biodiversity.org.au/node/apni/2909860,https://id.biodiversity.org.au/taxon/apni/51431788,https://id.biodiversity.org.au/name/apni/54723,Cassinia compacta [alternative possible names: Cassinia accipitrum (pro parte misapplied) | Cassinia straminea (pro parte misapplied) | Cassinia telfordii (pro parte misapplied) | Cassinia accipitrum (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51695393,,Cassinia compacta,native @@ -43,8 +43,8 @@ Convolvulus farinosus,Convolvulus farinosus,,Convolvulus,Convolvulaceae,species, Coprosma niphophila,Coprosma niphophila,,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,NSW,Coprosma niphophila Orchard,https://id.biodiversity.org.au/node/apni/2910618,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78856,Coprosma niphophila,https://id.biodiversity.org.au/name/apni/78856,https://id.biodiversity.org.au/taxon/apni/51446612,,Coprosma niphophila,native Coprosma nivalis,Coprosma nivalis,,Coprosma,Rubiaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Coprosma nivalis W.R.B.Oliv.,https://id.biodiversity.org.au/node/apni/2915002,https://id.biodiversity.org.au/node/apni/8135850,https://id.biodiversity.org.au/name/apni/78866,Coprosma nivalis,https://id.biodiversity.org.au/name/apni/78866,https://id.biodiversity.org.au/taxon/apni/51446612,,Coprosma nivalis,native Correa alba,Correa alba,,Correa,Rutaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Correa alba Andrews,https://id.biodiversity.org.au/node/apni/2906721,https://id.biodiversity.org.au/taxon/apni/51447015,https://id.biodiversity.org.au/name/apni/80283,Correa alba,https://id.biodiversity.org.au/name/apni/80283,https://id.biodiversity.org.au/taxon/apni/51461748,,Correa alba,native -Corymbia citriodora,Corymbia citriodora,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,https://id.biodiversity.org.au/taxon/apni/51702983,,Corymbia citriodora,native and naturalised -Corymbia eximia,Corymbia eximia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,https://id.biodiversity.org.au/taxon/apni/51702983,,Corymbia eximia,native +Corymbia citriodora,Corymbia citriodora,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (doubtfully naturalised), Qld, NSW (native and naturalised), Vic (naturalised)",Corymbia citriodora (Hook.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2912509,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119387,Corymbia citriodora,https://id.biodiversity.org.au/name/apni/119387,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia citriodora,native and naturalised +Corymbia eximia,Corymbia eximia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Corymbia eximia (Schauer) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2909833,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119402,Corymbia eximia,https://id.biodiversity.org.au/name/apni/119402,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia eximia,native Crassula decumbens,Crassula decumbens,,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, ACT, Vic, Tas",Crassula decumbens Thunb.,https://id.biodiversity.org.au/node/apni/2889646,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/83855,Crassula decumbens,https://id.biodiversity.org.au/name/apni/83855,https://id.biodiversity.org.au/taxon/apni/51270792,,Crassula decumbens,native Crassula peduncularis,Crassula peduncularis,,Crassula,Crassulaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, ACT, Vic, Tas",Crassula peduncularis (Sm.) F.Meigen,https://id.biodiversity.org.au/node/apni/2895654,https://id.biodiversity.org.au/node/apni/2903354,https://id.biodiversity.org.au/name/apni/84005,Crassula peduncularis,https://id.biodiversity.org.au/name/apni/84005,https://id.biodiversity.org.au/taxon/apni/51270792,,Crassula peduncularis,native Crotalaria brevis,Crotalaria brevis,,Crotalaria,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Crotalaria brevis Domin,https://id.biodiversity.org.au/node/apni/2906180,https://id.biodiversity.org.au/taxon/apni/51300011,https://id.biodiversity.org.au/name/apni/85578,Crotalaria brevis,https://id.biodiversity.org.au/name/apni/85578,https://id.biodiversity.org.au/taxon/apni/51702961,,Crotalaria brevis,native @@ -65,31 +65,31 @@ Dillwynia floribunda,Dillwynia floribunda,,Dillwynia,Fabaceae,species,APC,accept Dinosperma erythrococcum,Dinosperma erythrococcum,,Dinosperma,Rutaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Dinosperma erythrococcum (F.Muell.) T.G.Hartley,https://id.biodiversity.org.au/node/apni/2897246,https://id.biodiversity.org.au/node/apni/2900591,https://id.biodiversity.org.au/name/apni/157718,Dinosperma erythrococcum,https://id.biodiversity.org.au/name/apni/157718,https://id.biodiversity.org.au/taxon/apni/51461748,,Dinosperma erythrococcum,native Dodonaea petiolaris,Dodonaea petiolaris,Dodonaea viscosa subsp. mucronata (pro parte misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Dodonaea petiolaris F.Muell.,https://id.biodiversity.org.au/node/apni/2921131,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72184,Dodonaea petiolaris [alternative possible names: Dodonaea viscosa subsp. mucronata (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51447212,,Dodonaea petiolaris,native Dodonaea truncatiales,Dodonaea truncatiales,Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied),Dodonaea,Sapindaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Dodonaea truncatiales F.Muell.,https://id.biodiversity.org.au/node/apni/7870563,https://id.biodiversity.org.au/taxon/apni/51447268,https://id.biodiversity.org.au/name/apni/72648,Dodonaea truncatiales [alternative possible names: Dodonaea heteromorpha (pro parte misapplied) | Dodonaea heteromorpha (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51447212,,Dodonaea truncatiales,native -Dovyalis caffra,Dovyalis caffra,,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/86110,https://id.biodiversity.org.au/taxon/apni/51436847,,Dovyalis caffra,naturalised +Dovyalis caffra,Dovyalis caffra,,Dovyalis,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (naturalised), NSW (naturalised)",Dovyalis caffra (Hook.f. & Harv.) Hook.f.,https://id.biodiversity.org.au/node/apni/2888866,https://id.biodiversity.org.au/node/apni/2897632,https://id.biodiversity.org.au/name/apni/199157,Dovyalis caffra,https://id.biodiversity.org.au/name/apni/199157,https://id.biodiversity.org.au/taxon/apni/51436847,,Dovyalis caffra,naturalised Elaeocarpus grandis,Elaeocarpus grandis,,Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Elaeocarpus grandis F.Muell.,https://id.biodiversity.org.au/node/apni/2895259,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115772,Elaeocarpus grandis,https://id.biodiversity.org.au/name/apni/115772,https://id.biodiversity.org.au/taxon/apni/51632282,,Elaeocarpus grandis,native Eleocharis pallens,Eleocharis pallens,,Eleocharis,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Eleocharis pallens S.T.Blake,https://id.biodiversity.org.au/node/apni/2899827,https://id.biodiversity.org.au/taxon/apni/51434435,https://id.biodiversity.org.au/name/apni/67140,Eleocharis pallens,https://id.biodiversity.org.au/name/apni/67140,https://id.biodiversity.org.au/taxon/apni/51460154,,Eleocharis pallens,native Endiandra globosa,Endiandra globosa,,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra globosa Maiden & Betche,https://id.biodiversity.org.au/node/apni/2901094,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111780,Endiandra globosa,https://id.biodiversity.org.au/name/apni/111780,https://id.biodiversity.org.au/taxon/apni/51438397,,Endiandra globosa,native Endiandra muelleri,Endiandra muelleri,,Endiandra,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Endiandra muelleri Meisn.,https://id.biodiversity.org.au/node/apni/2903619,https://id.biodiversity.org.au/taxon/apni/51438414,https://id.biodiversity.org.au/name/apni/111996,Endiandra muelleri,https://id.biodiversity.org.au/name/apni/111996,https://id.biodiversity.org.au/taxon/apni/51438397,,Endiandra muelleri,native Epilobium gunnianum,Epilobium gunnianum,,Epilobium,Onagraceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic, Tas",Epilobium gunnianum Hausskn.,https://id.biodiversity.org.au/node/apni/2903068,https://id.biodiversity.org.au/taxon/apni/51440863,https://id.biodiversity.org.au/name/apni/105579,Epilobium gunnianum,https://id.biodiversity.org.au/name/apni/105579,https://id.biodiversity.org.au/taxon/apni/51440864,,Epilobium gunnianum,native -Eremophila deserti,Eremophila deserti,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,https://id.biodiversity.org.au/taxon/apni/51461527,,Eremophila deserti,native -Eremophila oppositifolia,Eremophila oppositifolia,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,https://id.biodiversity.org.au/taxon/apni/51461527,,Eremophila oppositifolia,native +Eremophila deserti,Eremophila deserti,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila deserti (A.Cunn. ex Benth.) Chinnock,https://id.biodiversity.org.au/node/apni/2897363,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/123426,Eremophila deserti,https://id.biodiversity.org.au/name/apni/123426,https://id.biodiversity.org.au/taxon/apni/51734003,,Eremophila deserti,native +Eremophila oppositifolia,Eremophila oppositifolia,,Eremophila,Scrophulariaceae,species,APC,accepted,Magnoliidae,"WA, SA, Qld, NSW, Vic",Eremophila oppositifolia R.Br.,https://id.biodiversity.org.au/node/apni/7951462,https://id.biodiversity.org.au/taxon/apni/51461526,https://id.biodiversity.org.au/name/apni/114575,Eremophila oppositifolia,https://id.biodiversity.org.au/name/apni/114575,https://id.biodiversity.org.au/taxon/apni/51734003,,Eremophila oppositifolia,native Erigeron conyzoides,Erigeron conyzoides,,Erigeron,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Erigeron conyzoides F.Muell.,https://id.biodiversity.org.au/node/apni/2913579,https://id.biodiversity.org.au/taxon/apni/51432118,https://id.biodiversity.org.au/name/apni/73195,Erigeron conyzoides,https://id.biodiversity.org.au/name/apni/239637,https://id.biodiversity.org.au/taxon/apni/51695393,,Erigeron conyzoides,native Erythroxylum australe,Erythroxylum australe,Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied),Erythroxylum,Erythroxylaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Erythroxylum australe F.Muell.,https://id.biodiversity.org.au/node/apni/2912212,https://id.biodiversity.org.au/node/apni/2919669,https://id.biodiversity.org.au/name/apni/75959,Erythroxylum australe [alternative possible names: Erythroxylum sp. Splityard Creek (L.Pedley 5360) (pro parte misapplied)],,https://id.biodiversity.org.au/node/apni/2893375,,Erythroxylum australe,native Escallonia bifida,Escallonia bifida,,Escallonia,Escalloniaceae,species,APC,accepted,Magnoliidae,NSW (naturalised),Escallonia bifida Link & Otto,https://id.biodiversity.org.au/taxon/apni/51435441,https://id.biodiversity.org.au/taxon/apni/51435442,https://id.biodiversity.org.au/name/apni/116602,Escallonia bifida,https://id.biodiversity.org.au/name/apni/116602,https://id.biodiversity.org.au/taxon/apni/51435443,,Escallonia bifida,naturalised -Eucalyptus badjensis,Eucalyptus badjensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus badjensis,native -Eucalyptus camphora,Eucalyptus camphora,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/node/apni/2891665,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus camphora,native -Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus dorrigoensis,native -Eucalyptus yangoura,Eucalyptus globoidea,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus globoidea,native -Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,https://id.biodiversity.org.au/taxon/apni/51702983,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native -Eucalyptus muelleriana,Eucalyptus muelleriana,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus muelleriana,native -Eucalyptus nandewarica,Eucalyptus nandewarica,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus nandewarica,native -Eucalyptus olida,Eucalyptus olida,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus olida,native -Eucalyptus pulverulenta,Eucalyptus pulverulenta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus pulverulenta,native -Eucalyptus recurva,Eucalyptus recurva,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus recurva,native -Eucalyptus rossii,Eucalyptus rossii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus rossii,native -Eucalyptus scias,Eucalyptus scias,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus scias,native -Eucalyptus viminalis,Eucalyptus viminalis,Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus viminalis,native -Eucalyptus youmanii,Eucalyptus youmanii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus youmanii,native +Eucalyptus badjensis,Eucalyptus badjensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus badjensis Beuzev. & M.B.Welch,https://id.biodiversity.org.au/node/apni/2912724,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/57323,Eucalyptus badjensis,https://id.biodiversity.org.au/name/apni/57323,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus badjensis,native +Eucalyptus camphora,Eucalyptus camphora,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic",Eucalyptus camphora R.T.Baker,https://id.biodiversity.org.au/taxon/apni/51738742,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/94439,Eucalyptus camphora,https://id.biodiversity.org.au/name/apni/94439,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus camphora,native +Eucalyptus dorrigoensis,Eucalyptus dorrigoensis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus dorrigoensis (Blakely) L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2903351,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118668,Eucalyptus dorrigoensis,https://id.biodiversity.org.au/name/apni/118668,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus dorrigoensis,native +Eucalyptus yangoura,Eucalyptus globoidea,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus globoidea Blakely,https://id.biodiversity.org.au/node/apni/5270850,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/61141,Eucalyptus globoidea,https://id.biodiversity.org.au/name/apni/92470,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus globoidea,native +Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon subsp. pruinosa,,Eucalyptus,Myrtaceae,subspecies,APC,accepted,Magnoliidae,"SA, NSW, Vic",Eucalyptus leucoxylon subsp. pruinosa (F.Muell. ex Miq.) Boland,https://id.biodiversity.org.au/node/apni/2908258,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/77407,Eucalyptus leucoxylon subsp. pruinosa,https://id.biodiversity.org.au/name/apni/77407,https://id.biodiversity.org.au/taxon/apni/51738744,Eucalyptus leucoxylon subsp. pruinosa,Eucalyptus leucoxylon,native +Eucalyptus muelleriana,Eucalyptus muelleriana,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Eucalyptus muelleriana A.W.Howitt,https://id.biodiversity.org.au/node/apni/2888508,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56840,Eucalyptus muelleriana,https://id.biodiversity.org.au/name/apni/56840,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus muelleriana,native +Eucalyptus nandewarica,Eucalyptus nandewarica,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus nandewarica L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2897688,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118852,Eucalyptus nandewarica,https://id.biodiversity.org.au/name/apni/118852,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus nandewarica,native +Eucalyptus olida,Eucalyptus olida,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus olida L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2914019,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118797,Eucalyptus olida,https://id.biodiversity.org.au/name/apni/118797,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus olida,native +Eucalyptus pulverulenta,Eucalyptus pulverulenta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus pulverulenta Sims,https://id.biodiversity.org.au/taxon/apni/51440675,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/106609,Eucalyptus pulverulenta,https://id.biodiversity.org.au/name/apni/106609,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus pulverulenta,native +Eucalyptus recurva,Eucalyptus recurva,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus recurva Crisp,https://id.biodiversity.org.au/node/apni/2892273,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/101532,Eucalyptus recurva,https://id.biodiversity.org.au/name/apni/101532,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus recurva,native +Eucalyptus rossii,Eucalyptus rossii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Eucalyptus rossii R.T.Baker & H.G.Sm.,https://id.biodiversity.org.au/node/apni/2900822,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/58182,Eucalyptus rossii,https://id.biodiversity.org.au/name/apni/58182,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus rossii,native +Eucalyptus scias,Eucalyptus scias,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NSW,Eucalyptus scias L.A.S.Johnson & K.D.Hill,https://id.biodiversity.org.au/node/apni/2893839,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/118833,Eucalyptus scias,https://id.biodiversity.org.au/name/apni/118833,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus scias,native +Eucalyptus viminalis,Eucalyptus viminalis,Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied),Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Eucalyptus viminalis Labill.,https://id.biodiversity.org.au/taxon/apni/51290421,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/65838,Eucalyptus viminalis [alternative possible names: Corymbia tessellaris (taxonomic synonym) | Eucalyptus dalrympleana subsp. dalrympleana (pro parte misapplied) | Eucalyptus diversifolia subsp. diversifolia (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus viminalis,native +Eucalyptus youmanii,Eucalyptus youmanii,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Eucalyptus youmanii Blakely & McKie,https://id.biodiversity.org.au/node/apni/2916227,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/92496,Eucalyptus youmanii,https://id.biodiversity.org.au/name/apni/92496,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus youmanii,native Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata var. queenslandica,,Euphorbia,Euphorbiaceae,variety,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Euphorbia inappendiculata var. queenslandica Domin,https://id.biodiversity.org.au/node/apni/7200245,https://id.biodiversity.org.au/taxon/apni/51435529,https://id.biodiversity.org.au/name/apni/92612,Euphorbia inappendiculata var. queenslandica,https://id.biodiversity.org.au/name/apni/92612,https://id.biodiversity.org.au/taxon/apni/51442249,Euphorbia inappendiculata var. queenslandica,Euphorbia inappendiculata,native Exocarpos homalocladus,Exocarpos homalocladus,,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,LHI,Exocarpos homalocladus C.Moore & F.Muell.,https://id.biodiversity.org.au/node/apni/2898548,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58158,Exocarpos homalocladus,https://id.biodiversity.org.au/name/apni/58158,https://id.biodiversity.org.au/taxon/apni/51447154,,Exocarpos homalocladus,native Exocarpos sparteus,Exocarpos sparteus,,Exocarpos,Santalaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Exocarpos sparteus R.Br.,https://id.biodiversity.org.au/node/apni/2898676,https://id.biodiversity.org.au/taxon/apni/51447153,https://id.biodiversity.org.au/name/apni/58330,Exocarpos sparteus,https://id.biodiversity.org.au/name/apni/58330,https://id.biodiversity.org.au/taxon/apni/51447154,,Exocarpos sparteus,native @@ -101,11 +101,11 @@ Gentiana wingecarribiensis,Gentiana wingecarribiensis,,Gentiana,Gentianaceae,spe Gentianella barringtonensis,Gentianella barringtonensis,,Gentianella,Gentianaceae,species,APC,accepted,Magnoliidae,NSW,Gentianella barringtonensis (L.G.Adams) Glenny,https://id.biodiversity.org.au/taxon/apni/51301045,https://id.biodiversity.org.au/taxon/apni/51301038,https://id.biodiversity.org.au/name/apni/192277,Gentianella barringtonensis,https://id.biodiversity.org.au/name/apni/192277,https://id.biodiversity.org.au/taxon/apni/51436871,,Gentianella barringtonensis,native Geranium obtusisepalum,Geranium obtusisepalum,,Geranium,Geraniaceae,species,APC,accepted,Magnoliidae,"NSW, ACT",Geranium obtusisepalum Carolin,https://id.biodiversity.org.au/node/apni/2910251,https://id.biodiversity.org.au/taxon/apni/51436946,https://id.biodiversity.org.au/name/apni/82004,Geranium obtusisepalum,https://id.biodiversity.org.au/name/apni/82004,https://id.biodiversity.org.au/taxon/apni/51436947,,Geranium obtusisepalum,native Geranium purpureum subsp. purpureum,Geranium purpureum,,Geranium,Geraniaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised)",Geranium purpureum Vill.,https://id.biodiversity.org.au/node/apni/2919721,https://id.biodiversity.org.au/taxon/apni/51436946,https://id.biodiversity.org.au/name/apni/82353,Geranium purpureum,https://id.biodiversity.org.au/name/apni/82382,https://id.biodiversity.org.au/taxon/apni/51436947,,Geranium purpureum,naturalised -Gompholobium grandiflorum,Gompholobium grandiflorum,,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65291,https://id.biodiversity.org.au/taxon/apni/51702961,,Gompholobium grandiflorum,native +Gompholobium grandiflorum,Gompholobium grandiflorum,,Gompholobium,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Gompholobium grandiflorum Sm.,https://id.biodiversity.org.au/node/apni/2909013,https://id.biodiversity.org.au/taxon/apni/51436123,https://id.biodiversity.org.au/name/apni/65291,Gompholobium grandiflorum,https://id.biodiversity.org.au/name/apni/65305,https://id.biodiversity.org.au/taxon/apni/51702961,,Gompholobium grandiflorum,native Goodenia varia,Goodenia varia,,Goodenia,Goodeniaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Goodenia varia R.Br.,https://id.biodiversity.org.au/node/apni/2910439,https://id.biodiversity.org.au/taxon/apni/51437012,https://id.biodiversity.org.au/name/apni/92079,Goodenia varia,https://id.biodiversity.org.au/name/apni/92079,https://id.biodiversity.org.au/taxon/apni/51462931,,Goodenia varia,native -Gossia bidwillii,Gossia bidwillii,,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,https://id.biodiversity.org.au/taxon/apni/51702983,,Gossia bidwillii,native -Grevillea scortechinii,Grevillea scortechinii,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51445337,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,https://id.biodiversity.org.au/taxon/apni/51614274,,Grevillea scortechinii,native -Hakea macraeana,Hakea macraeana,Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51614274,,Hakea macraeana,native +Gossia bidwillii,Gossia bidwillii,,Gossia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Gossia bidwillii (Benth.) N.Snow & Guymer,https://id.biodiversity.org.au/taxon/apni/51439972,https://id.biodiversity.org.au/taxon/apni/51439958,https://id.biodiversity.org.au/name/apni/180918,Gossia bidwillii,https://id.biodiversity.org.au/name/apni/180918,https://id.biodiversity.org.au/taxon/apni/51738744,,Gossia bidwillii,native +Grevillea scortechinii,Grevillea scortechinii,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Grevillea scortechinii (F.Muell. ex Scort.) F.Muell.,https://id.biodiversity.org.au/node/apni/2918803,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/63322,Grevillea scortechinii,https://id.biodiversity.org.au/name/apni/63322,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea scortechinii,native +Hakea macraeana,Hakea macraeana,Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied),Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"NSW, Vic",Hakea macraeana F.Muell.,https://id.biodiversity.org.au/node/apni/2895080,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/94862,Hakea macraeana [alternative possible names: Hakea ochroptera (pro parte taxonomic synonym) | Hakea lissosperma (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51732901,,Hakea macraeana,native Hemisteptia lyrata,Hemisteptia lyrata,,Hemisteptia,Asteraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Hemisteptia lyrata (Bunge) Fisch. & C.A.Mey.,https://id.biodiversity.org.au/taxon/apni/51268530,https://id.biodiversity.org.au/taxon/apni/51268531,https://id.biodiversity.org.au/name/apni/230066,Hemisteptia lyrata,https://id.biodiversity.org.au/name/apni/230066,https://id.biodiversity.org.au/taxon/apni/51695393,,Hemisteptia lyrata,native Hibbertia crinita,Hibbertia crinita,,Hibbertia,Dilleniaceae,species,APC,accepted,Magnoliidae,"SA, Vic",Hibbertia crinita Toelken,https://id.biodiversity.org.au/node/apni/2899370,https://id.biodiversity.org.au/taxon/apni/51434912,https://id.biodiversity.org.au/name/apni/170069,Hibbertia crinita,https://id.biodiversity.org.au/name/apni/170069,https://id.biodiversity.org.au/taxon/apni/51434913,,Hibbertia crinita,native Hibiscus brachysiphonius,Hibiscus brachysiphonius,,Hibiscus,Malvaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Hibiscus brachysiphonius F.Muell.,https://id.biodiversity.org.au/node/apni/2891329,https://id.biodiversity.org.au/taxon/apni/51439316,https://id.biodiversity.org.au/name/apni/91736,Hibiscus brachysiphonius,https://id.biodiversity.org.au/name/apni/91736,https://id.biodiversity.org.au/taxon/apni/51439248,,Hibiscus brachysiphonius,native @@ -125,25 +125,25 @@ Lepidium foliosum,Lepidium foliosum,,Lepidium,Brassicaceae,species,APC,accepted, Lepidium oxytrichum,Lepidium oxytrichum,,Lepidium,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Lepidium oxytrichum Sprague,https://id.biodiversity.org.au/node/apni/2915883,https://id.biodiversity.org.au/taxon/apni/51612686,https://id.biodiversity.org.au/name/apni/84027,Lepidium oxytrichum,https://id.biodiversity.org.au/name/apni/84027,https://id.biodiversity.org.au/taxon/apni/51612687,,Lepidium oxytrichum,native Lepidosperma gladiatum,Lepidosperma gladiatum,,Lepidosperma,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Lepidosperma gladiatum Labill.,https://id.biodiversity.org.au/node/apni/2896726,https://id.biodiversity.org.au/taxon/apni/51434499,https://id.biodiversity.org.au/name/apni/85937,Lepidosperma gladiatum,https://id.biodiversity.org.au/name/apni/85937,https://id.biodiversity.org.au/taxon/apni/51460154,,Lepidosperma gladiatum,native Leptomeria drupacea,Leptomeria drupacea,,Leptomeria,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Leptomeria drupacea (Labill.) Druce,https://id.biodiversity.org.au/node/apni/2892780,https://id.biodiversity.org.au/node/apni/2897704,https://id.biodiversity.org.au/name/apni/61625,Leptomeria drupacea,https://id.biodiversity.org.au/name/apni/61625,https://id.biodiversity.org.au/taxon/apni/51447154,,Leptomeria drupacea,native -Leptospermum continentale,Leptospermum continentale,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,https://id.biodiversity.org.au/taxon/apni/51702983,,Leptospermum continentale,native -Leptospermum obovatum,Leptospermum obovatum,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,https://id.biodiversity.org.au/taxon/apni/51702983,,Leptospermum obovatum,native -Leucopogon amplexicaulis,Leucopogon amplexicaulis,,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,https://id.biodiversity.org.au/taxon/apni/51436079,,Leucopogon amplexicaulis,native +Leptospermum continentale,Leptospermum continentale,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic",Leptospermum continentale Joy Thomps.,https://id.biodiversity.org.au/node/apni/2917147,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/81291,Leptospermum continentale,https://id.biodiversity.org.au/name/apni/81291,https://id.biodiversity.org.au/taxon/apni/51738744,,Leptospermum continentale,native +Leptospermum obovatum,Leptospermum obovatum,,Leptospermum,Myrtaceae,species,APC,accepted,Magnoliidae,"NSW, ACT, Vic",Leptospermum obovatum Sweet,https://id.biodiversity.org.au/node/apni/2891711,https://id.biodiversity.org.au/taxon/apni/51440260,https://id.biodiversity.org.au/name/apni/99608,Leptospermum obovatum,https://id.biodiversity.org.au/name/apni/99608,https://id.biodiversity.org.au/taxon/apni/51738744,,Leptospermum obovatum,native +Leucopogon amplexicaulis,Leucopogon amplexicaulis,,Leucopogon,Ericaceae,species,APC,accepted,Magnoliidae,NSW,Leucopogon amplexicaulis (Rudge) R.Br.,https://id.biodiversity.org.au/node/apni/2896081,https://id.biodiversity.org.au/taxon/apni/51435325,https://id.biodiversity.org.au/name/apni/106715,Leucopogon amplexicaulis,https://id.biodiversity.org.au/name/apni/106715,https://id.biodiversity.org.au/taxon/apni/51738121,,Leucopogon amplexicaulis,native Lobelia pedunculata,Lobelia pedunculata,,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"SA, NSW, ACT, Vic, Tas",Lobelia pedunculata R.Br.,https://id.biodiversity.org.au/node/apni/2901444,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/106999,Lobelia pedunculata,https://id.biodiversity.org.au/name/apni/106999,https://id.biodiversity.org.au/taxon/apni/51432853,,Lobelia pedunculata,native Lobelia trigonocaulis,Lobelia trigonocaulis,,Lobelia,Campanulaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Lobelia trigonocaulis F.Muell.,https://id.biodiversity.org.au/node/apni/2901863,https://id.biodiversity.org.au/taxon/apni/51432852,https://id.biodiversity.org.au/name/apni/107808,Lobelia trigonocaulis,https://id.biodiversity.org.au/name/apni/107808,https://id.biodiversity.org.au/taxon/apni/51432853,,Lobelia trigonocaulis,native Lotononis bainesii,Lotononis bainesii,,Lotononis,Fabaceae,species,APC,accepted,Magnoliidae,"Qld (naturalised), NSW (naturalised)",Lotononis bainesii Baker,https://id.biodiversity.org.au/node/apni/2904277,https://id.biodiversity.org.au/node/apni/2898035,https://id.biodiversity.org.au/name/apni/109834,Lotononis bainesii,https://id.biodiversity.org.au/name/apni/109834,https://id.biodiversity.org.au/taxon/apni/51702961,,Lotononis bainesii,naturalised Lotus corniculatus,Lotus corniculatus,Lotus preslii (pro parte misapplied) | Lotus uliginosus (pro parte misapplied),Lotus,Fabaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), Qld (formerly naturalised), NSW (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Lotus corniculatus L.,https://id.biodiversity.org.au/node/apni/2921302,https://id.biodiversity.org.au/taxon/apni/51436215,https://id.biodiversity.org.au/name/apni/110319,Lotus corniculatus [alternative possible names: Lotus preslii (pro parte misapplied) | Lotus uliginosus (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Lotus corniculatus,naturalised Lupinus polyphyllus,Lupinus polyphyllus,,Lupinus,Fabaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), Vic (naturalised)",Lupinus polyphyllus Lindl.,https://id.biodiversity.org.au/node/apni/2917429,https://id.biodiversity.org.au/node/apni/2918316,https://id.biodiversity.org.au/name/apni/100609,Lupinus polyphyllus,https://id.biodiversity.org.au/name/apni/100609,https://id.biodiversity.org.au/taxon/apni/51702961,,Lupinus polyphyllus,naturalised Medicago orbicularis,Medicago orbicularis,,Medicago,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (formerly naturalised)",Medicago orbicularis (L.) Bartal.,https://id.biodiversity.org.au/node/apni/2901771,https://id.biodiversity.org.au/taxon/apni/51285690,https://id.biodiversity.org.au/name/apni/59568,Medicago orbicularis,https://id.biodiversity.org.au/name/apni/59568,https://id.biodiversity.org.au/taxon/apni/51702961,,Medicago orbicularis,naturalised -Melichrus procumbens,Melichrus procumbens,,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,https://id.biodiversity.org.au/taxon/apni/51436079,,Melichrus procumbens,native +Melichrus procumbens,Melichrus procumbens,,Melichrus,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Melichrus procumbens (Cav.) Druce,https://id.biodiversity.org.au/node/apni/2905836,https://id.biodiversity.org.au/node/apni/2914566,https://id.biodiversity.org.au/name/apni/114051,Melichrus procumbens,https://id.biodiversity.org.au/name/apni/114051,https://id.biodiversity.org.au/taxon/apni/51738121,,Melichrus procumbens,native Mischocarpus australis,Mischocarpus australis,,Mischocarpus,Sapindaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Mischocarpus australis S.T.Reynolds,https://id.biodiversity.org.au/node/apni/2893744,https://id.biodiversity.org.au/taxon/apni/51389373,https://id.biodiversity.org.au/name/apni/115917,Mischocarpus australis,https://id.biodiversity.org.au/name/apni/115917,https://id.biodiversity.org.au/taxon/apni/51447212,,Mischocarpus australis,native Muehlenbeckia adpressa,Muehlenbeckia adpressa,,Muehlenbeckia,Polygonaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Muehlenbeckia adpressa (Labill.) Meisn.,https://id.biodiversity.org.au/node/apni/4750977,https://id.biodiversity.org.au/taxon/apni/51291654,https://id.biodiversity.org.au/name/apni/107852,Muehlenbeckia adpressa,https://id.biodiversity.org.au/name/apni/107852,https://id.biodiversity.org.au/taxon/apni/51444856,,Muehlenbeckia adpressa,native -Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,https://id.biodiversity.org.au/taxon/apni/51461527,Myoporum boninense subsp. australe,Myoporum boninense,native +Myoporum boninense subsp. australe,Myoporum boninense subsp. australe,,Myoporum,Scrophulariaceae,subspecies,APC,accepted,Magnoliidae,"Qld, NSW",Myoporum boninense subsp. australe Chinnock,https://id.biodiversity.org.au/node/apni/7957248,https://id.biodiversity.org.au/taxon/apni/51447443,https://id.biodiversity.org.au/name/apni/117892,Myoporum boninense subsp. australe,https://id.biodiversity.org.au/name/apni/117892,https://id.biodiversity.org.au/taxon/apni/51734003,Myoporum boninense subsp. australe,Myoporum boninense,native Nicotiana glauca,Nicotiana glauca,,Nicotiana,Solanaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), Vic (naturalised)",Nicotiana glauca Graham,https://id.biodiversity.org.au/node/apni/2887606,https://id.biodiversity.org.au/taxon/apni/51447689,https://id.biodiversity.org.au/name/apni/77368,Nicotiana glauca,https://id.biodiversity.org.au/name/apni/77368,https://id.biodiversity.org.au/taxon/apni/51447684,,Nicotiana glauca,naturalised Nicotiana goodspeedii,Nicotiana goodspeedii,,Nicotiana,Solanaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Nicotiana goodspeedii H.-M.Wheeler,https://id.biodiversity.org.au/node/apni/2908652,https://id.biodiversity.org.au/taxon/apni/51447689,https://id.biodiversity.org.au/name/apni/77381,Nicotiana goodspeedii,https://id.biodiversity.org.au/name/apni/77381,https://id.biodiversity.org.au/taxon/apni/51447684,,Nicotiana goodspeedii,native Oxalis corniculata,Oxalis corniculata,,Oxalis,Oxalidaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), ChI (naturalised), NT (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Oxalis corniculata L.,https://id.biodiversity.org.au/node/apni/2909588,https://id.biodiversity.org.au/taxon/apni/51442068,https://id.biodiversity.org.au/name/apni/89460,Oxalis corniculata,https://id.biodiversity.org.au/name/apni/89460,https://id.biodiversity.org.au/taxon/apni/51442069,,Oxalis corniculata,naturalised Pandorea pandorana subsp. austrocaledonica,Pandorea pandorana,,Pandorea,Bignoniaceae,species,APC,accepted,Magnoliidae,"WA, SA (native and naturalised), Qld, NSW, LHI, NI (presumed extinct), Vic (native and naturalised), Tas",Pandorea pandorana (Andrews) Steenis,https://id.biodiversity.org.au/taxon/apni/51269199,https://id.biodiversity.org.au/taxon/apni/51269200,https://id.biodiversity.org.au/name/apni/91117,Pandorea pandorana,https://id.biodiversity.org.au/name/apni/141640,https://id.biodiversity.org.au/taxon/apni/51439229,,Pandorea pandorana,native and naturalised Paraserianthes lophantha,Paraserianthes lophantha,,Paraserianthes,Fabaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), SA (naturalised), NSW (naturalised), NI (naturalised), Vic (naturalised), Tas (naturalised)",Paraserianthes lophantha (Willd.) I.C.Nielsen,https://id.biodiversity.org.au/taxon/apni/51286820,https://id.biodiversity.org.au/taxon/apni/51286819,https://id.biodiversity.org.au/name/apni/116755,Paraserianthes lophantha,https://id.biodiversity.org.au/name/apni/116755,https://id.biodiversity.org.au/taxon/apni/51702961,,Paraserianthes lophantha,native and naturalised -Parentucellia latifolia,Parentucellia latifolia,,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,https://id.biodiversity.org.au/taxon/apni/51291037,,Parentucellia latifolia,naturalised +Parentucellia latifolia,Parentucellia latifolia,,Parentucellia,Orobanchaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Parentucellia latifolia (L.) Caruel,https://id.biodiversity.org.au/taxon/apni/51291069,https://id.biodiversity.org.au/taxon/apni/51291062,https://id.biodiversity.org.au/name/apni/96753,Parentucellia latifolia,https://id.biodiversity.org.au/name/apni/96753,https://id.biodiversity.org.au/taxon/apni/51734010,,Parentucellia latifolia,naturalised Hypoxis glabella var. glabella,Pauridia glabella var. glabella,,Pauridia,Hypoxidaceae,variety,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic, Tas",Pauridia glabella (R.Br.) Snijman & Kocyan var. glabella,https://id.biodiversity.org.au/node/apni/7455351,https://id.biodiversity.org.au/taxon/apni/51437983,https://id.biodiversity.org.au/name/apni/244102,Pauridia glabella var. glabella,https://id.biodiversity.org.au/name/apni/81442,https://id.biodiversity.org.au/taxon/apni/51437984,Pauridia glabella var. glabella,Pauridia glabella,native Phlegmatospermum cochlearinum,Phlegmatospermum cochlearinum,,Phlegmatospermum,Brassicaceae,species,APC,accepted,Magnoliidae,"WA, SA, NSW, Vic",Phlegmatospermum cochlearinum (F.Muell.) O.E.Schulz,https://id.biodiversity.org.au/node/apni/2915554,https://id.biodiversity.org.au/node/apni/2897988,https://id.biodiversity.org.au/name/apni/81861,Phlegmatospermum cochlearinum,https://id.biodiversity.org.au/name/apni/81861,https://id.biodiversity.org.au/taxon/apni/51612687,,Phlegmatospermum cochlearinum,native Phyla nodiflora,Phyla nodiflora,,Phyla,Verbenaceae,species,APC,accepted,Magnoliidae,"WA (native and naturalised), CoI (naturalised), NT, Qld, NSW (naturalised)",Phyla nodiflora (L.) Greene,https://id.biodiversity.org.au/node/apni/2907374,https://id.biodiversity.org.au/node/apni/2892182,https://id.biodiversity.org.au/name/apni/74617,Phyla nodiflora,https://id.biodiversity.org.au/name/apni/74617,https://id.biodiversity.org.au/taxon/apni/51448662,,Phyla nodiflora,native and naturalised @@ -157,14 +157,14 @@ Polycarpon tetraphyllum,Polycarpon tetraphyllum,,Polycarpon,Caryophyllaceae,spec Potamogeton australiensis,Potamogeton australiensis,,Potamogeton,Potamogetonaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Potamogeton australiensis A.Benn.,https://id.biodiversity.org.au/node/apni/7808489,https://id.biodiversity.org.au/node/apni/8770682,https://id.biodiversity.org.au/name/apni/65827,Potamogeton australiensis,https://id.biodiversity.org.au/name/apni/65827,https://id.biodiversity.org.au/taxon/apni/51353530,,Potamogeton australiensis,native Psoralea pinnata,Psoralea pinnata,,Psoralea,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised), Tas (naturalised)",Psoralea pinnata L.,https://id.biodiversity.org.au/node/apni/2887023,https://id.biodiversity.org.au/node/apni/8771698,https://id.biodiversity.org.au/name/apni/88820,Psoralea pinnata,https://id.biodiversity.org.au/name/apni/88820,https://id.biodiversity.org.au/taxon/apni/51702961,,Psoralea pinnata,naturalised Pultenaea ferruginea,Pultenaea ferruginea,,Pultenaea,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Pultenaea ferruginea Rudge,https://id.biodiversity.org.au/node/apni/2906803,https://id.biodiversity.org.au/taxon/apni/51436286,https://id.biodiversity.org.au/name/apni/59158,Pultenaea ferruginea,https://id.biodiversity.org.au/name/apni/59158,https://id.biodiversity.org.au/taxon/apni/51702961,,Pultenaea ferruginea,native -Rhodamnia argentea,Rhodamnia argentea,,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,https://id.biodiversity.org.au/taxon/apni/51702983,,Rhodamnia argentea,native +Rhodamnia argentea,Rhodamnia argentea,,Rhodamnia,Myrtaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Rhodamnia argentea Benth.,https://id.biodiversity.org.au/node/apni/2919069,https://id.biodiversity.org.au/taxon/apni/51440311,https://id.biodiversity.org.au/name/apni/68532,Rhodamnia argentea,https://id.biodiversity.org.au/name/apni/68532,https://id.biodiversity.org.au/taxon/apni/51738744,,Rhodamnia argentea,native Rorippa gigantea,Rorippa gigantea,,Rorippa,Brassicaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rorippa gigantea (Hook.) Garn.-Jones,https://id.biodiversity.org.au/node/apni/2920330,https://id.biodiversity.org.au/node/apni/8442201,https://id.biodiversity.org.au/name/apni/75950,Rorippa gigantea,https://id.biodiversity.org.au/name/apni/75950,https://id.biodiversity.org.au/taxon/apni/51612687,,Rorippa gigantea,native -Rubus parvifolius,Rubus parvifolius,,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,https://id.biodiversity.org.au/taxon/apni/51446278,,Rubus parvifolius,native -Salix alba,Salix alba,,Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: NA],,https://id.biodiversity.org.au/taxon/apni/51436847,,Salix alba,naturalised +Rubus parvifolius,Rubus parvifolius,,Rubus,Rosaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Rubus parvifolius L.,https://id.biodiversity.org.au/node/apni/2901867,https://id.biodiversity.org.au/taxon/apni/51446575,https://id.biodiversity.org.au/name/apni/85986,Rubus parvifolius,https://id.biodiversity.org.au/name/apni/85986,https://id.biodiversity.org.au/taxon/apni/51737985,,Rubus parvifolius,native +Salix alba,Salix alba,Salix x fragilis nothovar. fragilis (pro parte misapplied),Salix,Salicaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), ACT (naturalised), Vic (naturalised)",Salix alba L.,https://id.biodiversity.org.au/node/apni/2896377,https://id.biodiversity.org.au/node/apni/8905801,https://id.biodiversity.org.au/name/apni/59687,Salix alba [alternative possible names: Salix x fragilis nothovar. fragilis (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51436847,,Salix alba,naturalised Schenkia australis,Schenkia australis,,Schenkia,Gentianaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic, Tas",Schenkia australis (R.Br.) G.Mans.,https://id.biodiversity.org.au/taxon/apni/51436897,https://id.biodiversity.org.au/taxon/apni/51436898,https://id.biodiversity.org.au/name/apni/200895,Schenkia australis,https://id.biodiversity.org.au/name/apni/200895,https://id.biodiversity.org.au/taxon/apni/51436871,,Schenkia australis,native Schoenus apogon,Schoenus apogon,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Schoenus apogon Roem. & Schult.,https://id.biodiversity.org.au/node/apni/2908439,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109452,Schoenus apogon,https://id.biodiversity.org.au/name/apni/109452,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus apogon,native Schoenus brevifolius,Schoenus brevifolius,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, Vic, Tas",Schoenus brevifolius R.Br.,https://id.biodiversity.org.au/node/apni/2904000,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/109778,Schoenus brevifolius,https://id.biodiversity.org.au/name/apni/109778,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus brevifolius,native -Schoenus lepidosperma,Schoenus lepidosperma,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/243667,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus lepidosperma,native +Schoenus lepidosperma,Schoenus lepidosperma,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"SA, NSW, Vic, Tas",Schoenus lepidosperma (F.Muell.) K.L.Wilson,https://id.biodiversity.org.au/node/apni/2893030,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/141376,Schoenus lepidosperma,https://id.biodiversity.org.au/name/apni/141376,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus lepidosperma,native Schoenus vaginatus,Schoenus vaginatus,,Schoenus,Cyperaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Schoenus vaginatus F.Muell. ex Benth.,https://id.biodiversity.org.au/node/apni/2896591,https://id.biodiversity.org.au/taxon/apni/51460153,https://id.biodiversity.org.au/name/apni/113246,Schoenus vaginatus,https://id.biodiversity.org.au/name/apni/113246,https://id.biodiversity.org.au/taxon/apni/51460154,,Schoenus vaginatus,native Scleria rugosa,Scleria rugosa,,Scleria,Cyperaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld, NSW",Scleria rugosa R.Br.,https://id.biodiversity.org.au/node/apni/2892143,https://id.biodiversity.org.au/taxon/apni/51434752,https://id.biodiversity.org.au/name/apni/64346,Scleria rugosa,https://id.biodiversity.org.au/name/apni/64346,https://id.biodiversity.org.au/taxon/apni/51460154,,Scleria rugosa,native Senecio longipilus,Senecio longipilus,,Senecio,Asteraceae,species,APC,accepted,Magnoliidae,"NSW, Tas",Senecio longipilus I.Thomps.,https://id.biodiversity.org.au/node/apni/2907653,https://id.biodiversity.org.au/taxon/apni/51614245,https://id.biodiversity.org.au/name/apni/189666,Senecio longipilus,https://id.biodiversity.org.au/name/apni/189666,https://id.biodiversity.org.au/taxon/apni/51695393,,Senecio longipilus,native @@ -176,10 +176,10 @@ Sparaxis bulbifera,Sparaxis bulbifera,,Sparaxis,Iridaceae,species,APC,accepted,M Spergularia diandra,Spergularia diandra,,Spergularia,Caryophyllaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), NSW (naturalised), Vic (naturalised)",Spergularia diandra (Guss.) Heldr.,https://id.biodiversity.org.au/node/apni/2886696,https://id.biodiversity.org.au/taxon/apni/51295406,https://id.biodiversity.org.au/name/apni/83464,Spergularia diandra,https://id.biodiversity.org.au/name/apni/83464,https://id.biodiversity.org.au/taxon/apni/51432987,,Spergularia diandra,naturalised Sphaeromorphaea littoralis,Sphaeromorphaea littoralis,,Sphaeromorphaea,Asteraceae,species,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW, Vic",Sphaeromorphaea littoralis (Retz.) A.R.Bean,https://id.biodiversity.org.au/node/apni/7069871,https://id.biodiversity.org.au/node/apni/7071683,https://id.biodiversity.org.au/name/apni/246779,Sphaeromorphaea littoralis,https://id.biodiversity.org.au/name/apni/246779,https://id.biodiversity.org.au/taxon/apni/51695393,,Sphaeromorphaea littoralis,native Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia subsp. angustifolia,,Stellaria,Caryophyllaceae,subspecies,APC,accepted,Magnoliidae,"SA, Qld, NSW, ACT, Vic, Tas",Stellaria angustifolia Hook. subsp. angustifolia,https://id.biodiversity.org.au/node/apni/2890520,https://id.biodiversity.org.au/taxon/apni/51433015,https://id.biodiversity.org.au/name/apni/240421,Stellaria angustifolia subsp. angustifolia,https://id.biodiversity.org.au/name/apni/240421,https://id.biodiversity.org.au/taxon/apni/51432987,Stellaria angustifolia subsp. angustifolia,Stellaria angustifolia,native -Styphelia viridis,Styphelia viridis,,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,https://id.biodiversity.org.au/taxon/apni/51436079,,Styphelia viridis,native +Styphelia viridis,Styphelia viridis,,Styphelia,Ericaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Styphelia viridis Andrews,https://id.biodiversity.org.au/node/apni/2912747,https://id.biodiversity.org.au/taxon/apni/51435346,https://id.biodiversity.org.au/name/apni/109318,Styphelia viridis,https://id.biodiversity.org.au/name/apni/109318,https://id.biodiversity.org.au/taxon/apni/51738121,,Styphelia viridis,native Swainsona cadellii,Swainsona cadellii,,Swainsona,Fabaceae,species,APC,accepted,Magnoliidae,NSW,Swainsona cadellii F.Muell. ex C.Moore,https://id.biodiversity.org.au/node/apni/2904099,https://id.biodiversity.org.au/taxon/apni/51436313,https://id.biodiversity.org.au/name/apni/76870,Swainsona cadellii,https://id.biodiversity.org.au/name/apni/76870,https://id.biodiversity.org.au/taxon/apni/51702961,,Swainsona cadellii,native Teucrium puberulum,Teucrium puberulum,,Teucrium,Lamiaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Teucrium puberulum (F.Muell.) Kattari & Bräuchler,https://id.biodiversity.org.au/taxon/apni/51288087,https://id.biodiversity.org.au/taxon/apni/51438311,https://id.biodiversity.org.au/name/apni/7660439,Teucrium puberulum,https://id.biodiversity.org.au/name/apni/7660439,https://id.biodiversity.org.au/taxon/apni/51696573,,Teucrium puberulum,native -Thelymitra kangaloonica,Thelymitra kangaloonica,,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,https://id.biodiversity.org.au/taxon/apni/51697009,,Thelymitra kangaloonica,native +Thelymitra kangaloonica,Thelymitra kangaloonica,,Thelymitra,Orchidaceae,species,APC,accepted,Magnoliidae,NSW,Thelymitra kangaloonica Jeanes,https://id.biodiversity.org.au/taxon/apni/51414328,https://id.biodiversity.org.au/taxon/apni/51631246,https://id.biodiversity.org.au/name/apni/233692,Thelymitra kangaloonica,https://id.biodiversity.org.au/name/apni/233692,https://id.biodiversity.org.au/taxon/apni/51727417,,Thelymitra kangaloonica,native Thesium australe,Thesium australe,,Thesium,Santalaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, ACT, Vic, Tas (presumed extinct)",Thesium australe R.Br.,https://id.biodiversity.org.au/node/apni/2891975,https://id.biodiversity.org.au/node/apni/2913858,https://id.biodiversity.org.au/name/apni/56224,Thesium australe,https://id.biodiversity.org.au/name/apni/56224,https://id.biodiversity.org.au/taxon/apni/51447154,,Thesium australe,native Trifolium dubium,Trifolium dubium,,Trifolium,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), SA (naturalised), Qld (naturalised), NSW (naturalised), LHI (naturalised), NI (naturalised), ACT (naturalised), Vic (naturalised), Tas (naturalised)",Trifolium dubium Sibth.,https://id.biodiversity.org.au/taxon/apni/51436351,https://id.biodiversity.org.au/taxon/apni/51436341,https://id.biodiversity.org.au/name/apni/115704,Trifolium dubium,https://id.biodiversity.org.au/name/apni/115704,https://id.biodiversity.org.au/taxon/apni/51702961,,Trifolium dubium,naturalised Veronica catenata,Veronica catenata,,Veronica,Plantaginaceae,species,APC,accepted,Magnoliidae,"SA (naturalised), NSW (naturalised), Vic (naturalised)",Veronica catenata Pennell,https://id.biodiversity.org.au/node/apni/2897164,https://id.biodiversity.org.au/taxon/apni/51632390,https://id.biodiversity.org.au/name/apni/67965,Veronica catenata,https://id.biodiversity.org.au/name/apni/67965,https://id.biodiversity.org.au/taxon/apni/51699383,,Veronica catenata,naturalised diff --git a/tests/testthat/examples/Test_2023_4/output/traits.csv b/tests/testthat/examples/Test_2023_4/output/traits.csv index be35a67d..2ed1a87f 100644 --- a/tests/testthat/examples/Test_2023_4/output/traits.csv +++ b/tests/testthat/examples/Test_2023_4/output/traits.csv @@ -22,7 +22,7 @@ Test_2023_4,Alectryon subdentatus,020,fruit_length,8,mm,species,minimum,measurem Test_2023_4,Amyema preissii,021,fruit_colour,pink white,,,mode,,1,,seedling,,,,,Test_2003,,02,,,,Part of Test Dataset 4,01,04,Amyema preissii Test_2023_4,Angophora leiocarpa,022,fruit_width,11,mm,species,mode,,1,field_experiment,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Angophora leiocarpa Test_2023_4,Capparis anomala,023,fruit_colour,purple,,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Apophyllum anomalum -Test_2023_4,Arbutus unedo,024,fruit_colour,red,,metapopulation,mode,,1,,seedling,03,,,,,02,02,,,,From `australia_2` site,01,04,Arbutus unedo +Test_2023_4,Arbutus unedo,024,fruit_colour,red,,metapopulation,mode,measurement,1,,seedling,03,,,,,02,02,,,,From `australia_2` site,01,04,Arbutus unedo Test_2023_4,Australina pusilla,025,fruit_length,1,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Australina pusilla Test_2023_4,Burmannia disticha,026,fruit_dehiscence,dehiscent,,species,mode,,1,,adult,,,,,,,02,,,,,01,02,Burmannia disticha Test_2023_4,Bursaria spinosa subsp. spinosa,027,fruit_width,9,mm,species,mode,,1,field_experiment,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Bursaria spinosa subsp. spinosa @@ -40,7 +40,7 @@ Test_2023_4,Centaurium tenuiflorum,038,fruit_length,6,mm,species,mode,,1,,seedli Test_2023_4,Cestrum nocturnum,039,fruit_width,8,mm,species,mode,,1,field_experiment,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Cestrum nocturnum Test_2023_4,Chthonocephalus pseudevax,040,fruit_length,0.5,mm,,mode,,1,,seedling,,,,,Test_2003,,01,,,,Part of Test Dataset 4,01,04,Chthonocephalus pseudevax Test_2023_4,Claoxylon australe,041,fruit_width,5,mm,species,mode,,1,field_experiment,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Claoxylon australe -Test_2023_4,Commersonia amystia,042,fruit_width,13,mm,species,maximum,,1,field_experiment,seedling,,,,,Test_2003,,01,,,,Part of Test Dataset 4,01,04,Commersonia amystia +Test_2023_4,Commersonia amystia,042,fruit_width,13,mm,species,maximum,unknown,1,field_experiment,seedling,,,,,Test_2003,,01,,,,Part of Test Dataset 4,01,04,Commersonia amystia Test_2023_4,Commersonia salviifolia,043,fruit_width,5,mm,species,mode,,1,field_experiment,seedling,,,,,Test_2000,,01,,,,Part of Test Dataset 4,01,04,Commersonia salviifolia Test_2023_4,Convolvulus farinosus,044,fruit_width,6,mm,species,mode,,1,field_experiment,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Convolvulus farinosus Test_2023_4,Coprosma niphophila,045,fruit_colour,orange red,,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Coprosma niphophila @@ -49,7 +49,7 @@ Test_2023_4,Correa alba,047,fruit_length,5,mm,species,mode,,1,,seedling,,,,,Test Test_2023_4,Corymbia citriodora,048,fruit_length,15,mm,,mode,measurement,1,literature,seedling,,,,,Test_2003,,01,,,,Part of Test Dataset 4,01,04,Corymbia citriodora Test_2023_4,Corymbia eximia,049,fruit_length,13,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Corymbia eximia Test_2023_4,Crassula decumbens,050,fruit_dehiscence,dehiscent,,population,mode,,1,,juvenile,01,,,,Test_2003,01,02,,,2020,Remarks for `fruit_dehiscence`,01,04,Crassula decumbens -Test_2023_4,Crassula peduncularis,051,fruit_dehiscence,dehiscent,,population,mode,,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,04,Crassula peduncularis +Test_2023_4,Crassula peduncularis,051,fruit_dehiscence,dehiscent,,population,mode,expert_score,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,04,Crassula peduncularis Test_2023_4,Crotalaria brevis,052,fruit_colour,brown,,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Crotalaria brevis Test_2023_4,Crotalaria brevis,052,fruit_length,6,mm,species,mean,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Crotalaria brevis Test_2023_4,Crotalaria grahamiana,053,fruit_dehiscence,dehiscent,,species,mode,,1,,adult,,,,,,,02,,,,,01,02,Crotalaria grahamiana @@ -63,7 +63,7 @@ Test_2023_4,Cyperus sculptus,060,fruit_length,1,mm,species,mode,,1,,seedling,,,, Test_2023_4,Dampiera fusca,061,fruit_colour,brown,,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Dampiera fusca Test_2023_4,Davidsonia johnsonii,062,fruit_length,30,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Davidsonia johnsonii Test_2023_4,Daviesia arenaria,063,fruit_length,7,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Daviesia arenaria -Test_2023_4,Solori involuta,064,fruit_dehiscence,indehiscent,,population,mode,,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,02,Derris involuta +Test_2023_4,Solori involuta,064,fruit_dehiscence,indehiscent,,population,mode,measurement,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,02,Derris involuta Test_2023_4,Dichromochlamys dentatifolia,065,fruit_length,1.8,mm,,mode,,1,field_experiment,seedling,,,,,Test_2003,,01,,,,Part of Test Dataset 4,01,04,Dichromochlamys dentatifolia Test_2023_4,Dillwynia cinerascens,066,fruit_length,5,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Dillwynia cinerascens Test_2023_4,Dillwynia floribunda,067,fruit_length,4,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Dillwynia floribunda @@ -103,7 +103,7 @@ Test_2023_4,Eucalyptus globoidea,097,fruit_width,6,mm,species,mode,,1,field_expe Test_2023_4,Eucalyptus youmanii,098,fruit_length,12,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Eucalyptus youmanii Test_2023_4,Eucalyptus youmanii,099,fruit_width,9,mm,species,mode,,1,field_experiment,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Eucalyptus youmanii Test_2023_4,Euphorbia inappendiculata var. queenslandica,100,fruit_length,1.5,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Euphorbia inappendiculata var. queenslandica -Test_2023_4,Exocarpos homalocladus,101,fruit_width,8,mm,species,maximum,,1,field_experiment,seedling,,,,,Test_2000,,02,,,,Part of Test Dataset 4,01,04,Exocarpos homalocladus +Test_2023_4,Exocarpos homalocladus,101,fruit_width,8,mm,species,maximum,measurement,1,field_experiment,seedling,,,,,Test_2000,,02,,,,Part of Test Dataset 4,01,04,Exocarpos homalocladus Test_2023_4,Exocarpos sparteus,102,fruit_length,5,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Exocarpos sparteus Test_2023_4,Ficus henneana,103,fruit_length,15,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Ficus henneana Test_2023_4,Freesia leichtlinii subsp. leichtlinii x Freesia leichtlinii subsp. alba,104,fruit_colour,green,,metapopulation,mode,,1,,seedling,03,,,,,02,02,,,,From `australia_2` site,01,04,Freesia hybrid @@ -124,7 +124,7 @@ Test_2023_4,Hibbertia crinita,118,fruit_dehiscence,dehiscent,,species,,,1,,adult Test_2023_4,Hibiscus brachysiphonius,119,fruit_length,15,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Hibiscus brachysiphonius Test_2023_4,Hibiscus sturtii,120,fruit_dehiscence,dehiscent,,species,mode,,1,,adult,,,,,,,02,,,,,01,02,Hibiscus sturtii Test_2023_4,Hypericum elodes,121,fruit_length,4,mm,species,mean,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Hypericum elodes -Test_2023_4,Pauridia glabella var. glabella,122,fruit_dehiscence,dehiscent,,population,mode,,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,02,Hypoxis glabella var. glabella +Test_2023_4,Pauridia glabella var. glabella,122,fruit_dehiscence,dehiscent,,population,mode,unknown,1,literature,adult,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,02,Hypoxis glabella var. glabella Test_2023_4,Imperata cylindrica,123,fruit_length,1,mm,species,minimum,measurement,1,literature,seedling,,,,,Test_2000,,02,,,2006-03,Part of Test Dataset 4,01,04,Imperata cylindrica Test_2023_4,Imperata cylindrica,124,fruit_length,1,mm,species,minimum,measurement,1,literature,seedling,,,,,Test_2000,,02,,,2007-03,Part of Test Dataset 4,01,04,Imperata cylindrica Test_2023_4,Indigofera triflora,125,fruit_length,30,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Indigofera triflora @@ -181,10 +181,10 @@ Test_2023_4,Phyla nodiflora,165,leaf_stomatal_conductance,0.1,mol{H2O}/m2/s,spec Test_2023_4,Phyla nodiflora,165,leaf_stomatal_conductance,0.37,mol{H2O}/m2/s,species,raw,measurement,5,field_experiment,seedling,,,,,,,02,,,,Part of Test Dataset 4,02,04,Phyla nodiflora Test_2023_4,Phyla nodiflora,165,leaf_stomatal_conductance,0.6,mol{H2O}/m2/s,species,raw,measurement,5,field_experiment,seedling,,,,,,,02,,,,Part of Test Dataset 4,02,04,Phyla nodiflora Test_2023_4,Picris barbarorum,166,fruit_length,7.5,mm,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Picris barbarorum -Test_2023_4,Pimelea ligustrina subsp. ligustrina,167,fruit_colour,green,,metapopulation,mode,,1,literature,seedling,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,03,Pimelea ligustrina subsp. ligustrina +Test_2023_4,Pimelea ligustrina subsp. ligustrina,167,fruit_colour,green,,metapopulation,mode,measurement,1,literature,seedling,03,,,,Test_2003,02,02,,,,From `australia_2` site,01,03,Pimelea ligustrina subsp. ligustrina Test_2023_4,Pinus pinea,168,fruit_colour,brown,,species,mode,,1,,seedling,,,,,,,02,,,,Part of Test Dataset 4,01,04,Pinus pinea Test_2023_4,Pisum sativum var. arvense,169,fruit_dehiscence,dehiscent,,species,mode,,1,,adult,,,,,,,02,,,,,01,02,Pisum sativum var. arvense -Test_2023_4,Pittosporum erioloma,170,fruit_dehiscence,dehiscent,,,mode,,1,literature,adult,,,,,Test_2003,,02,,,,,01,04,Pittosporum erioloma +Test_2023_4,Pittosporum erioloma,170,fruit_dehiscence,dehiscent,,,mode,measurement,1,literature,adult,,,,,Test_2003,,02,,,,,01,04,Pittosporum erioloma Test_2023_4,Plantago turrifera,171,fruit_length,3,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Plantago turrifera Test_2023_4,Polycarpon tetraphyllum,172,fruit_dehiscence,dehiscent,,species,mode,,1,,adult,,,,,,,02,,,,,01,02,Polycarpon tetraphyllum Test_2023_4,Potamogeton australiensis,173,fruit_length,4,mm,species,mode,,1,,seedling,,,,,,,01,,,,Part of Test Dataset 4,01,04,Potamogeton australiensis diff --git a/tests/testthat/examples/Test_2023_5/README.md b/tests/testthat/examples/Test_2023_5/README.md index 81a9a017..a9702e6c 100644 --- a/tests/testthat/examples/Test_2023_5/README.md +++ b/tests/testthat/examples/Test_2023_5/README.md @@ -3,15 +3,17 @@ This dataset is for testing: - `individual_id` for wide datasets -- Different `bibtype`s and secondary and original sources (also check methods table), with `source_id` column (check joining to methods table somewhere else?) +- Different `bibtype`s and secondary and original sources (also check methods table), with `source_id` column - No locations or contexts - Units read in from a column (check unit conversions are working) - Bins and ranges have units that are converted correctly -Lizzy recommends this dataset for testing units: -*"And if you're hunting for a dataset with good info to test units & source_id, maybe take some snippets from Richards_2008. There are separate columns for SLA and LMA. You could take just the rows with data for one of those and then merge them into a single column with a second column for units. And have some dummy data that is a bin - like made up lifespan data with a required unit conversion from either a column or within the metadata."* - -Test_2023_5 is a copy of Falster_2005_1 (maybe change to Richards_2008) with the following modifications: +Test_2023_5 is a copy of Richards_2008 with the following modifications: +- Added `individual_id` column and changed `entity_type` to individual (made up some values to test `individual_id`) - Added all `bibtype` options to the dataset via secondary/original sources +- Changed the `source_id` column and metadata to include more variety of sources +- Removed locations, contexts, and substitutions +- Subsetted to SLA and added units column +- Added some bin values in leaf lifespan data and add units column See output/ for expected output files. diff --git a/tests/testthat/examples/Test_2023_5/data.csv b/tests/testthat/examples/Test_2023_5/data.csv index 6cfcbcb7..6a8c1069 100644 --- a/tests/testthat/examples/Test_2023_5/data.csv +++ b/tests/testthat/examples/Test_2023_5/data.csv @@ -1,46 +1,34 @@ -Species,species_abb,site,LMA (mg mm-2),Leaf nitrogen (mg mg-1),leaf size (mm2),wood density (mg mm-3),branch mass fraction,Seed mass (mg),LASA10,LASA250,LASA50,LASA1000 -Acacia celsa,acacel,Atherton,0.145,0.0214,2786,0.498,0.67,10.3,2977,7260,3722,6824 -Acronychia acidula,acraci,Atherton,0.085,0.0243,14302,0.525,0.48,,,7560,5541,9480 -Alphitonia petriei,alppet,Atherton,0.149,0.0163,6820,0.413,0.42,27.2,,4340,3313,4335 -Glochidion hylandii,glohyl,Atherton,0.106,0.0137,3209,0.566,0.41,10.41,1993,5075,5455,8664 -Homalanthus novoguineensis,omanov,Atherton,0.082,0.022,10682,0.319,0.47,7,,2136,2158,3307 -Melicope elleryana,melell,Atherton,0.075,0.0268,6955,0.346,0.58,1.61,,4201,2860,6119 -Neolitsea dealbata,neodea,Atherton,0.093,0.0164,5228,0.352,0.58,176.1,1686,2747,3049,7504 -Polyscias australiana,polaus,Atherton,0.079,0.0154,6806,0.397,0.42,8.35,,6008,,6700 -Psychotria sp Utchee Creek,psyspp,Atherton,0.108,0.0179,11157,0.582,0,23.09,,4977,2302,2037 -Rhodomyrtus trineura,rhotri,Atherton,0.129,0.0111,3401,0.763,0.34,,4321,3803,6088,6877 -Acmena graveolens,acmgra,Cape Tribulation,0.151,0.0155,5246,0.599,0.67,,,3057,2667,7156 -Aleurites rockinghamensis,aleroc,Cape Tribulation,0.113,0.0184,73984,0.28,0.02,7077,,4194,,6209 -Alstonia scholaris,alssch,Cape Tribulation,0.107,0.0223,6182,0.361,0.46,1.53,,1854,1682,3932 -Argyrodendron peralatum,argper,Cape Tribulation,0.244,0.0119,3201,0.726,0.71,433,,3832,1689,6718 -Atractocarpus hirtus,atrhir,Cape Tribulation,0.072,0.0157,11374,0.804,0.28,,,7143,6727,6103 -Brombya platynema,bropla,Cape Tribulation,0.106,0.0188,8218,0.603,0.33,,,4261,3531,5377 -Cardwellia sublimis,carsub,Cape Tribulation,0.127,0.0128,4352,0.603,0.56,582.3,,6315,4880,8282 -Castanospermum australe,casaus,Cape Tribulation,0.117,0.0237,2765,0.587,0.37,14851,,7329,,8869 -Cleistanthus myrianthus,clemyr,Cape Tribulation,0.078,0.0228,4828,0.588,0.56,,3720,6084,5233,8559 -Cryptocarya laevigata,crylae,Cape Tribulation,0.087,0.0156,2682,0.64,0.65,1281,1391,3297,4680,7588 -Cryptocarya mackinnoniana,crymac,Cape Tribulation,0.204,0.0152,10458,0.655,0.61,204,,3277,2325,8657 -Cryptocarya murrayi,crymur,Cape Tribulation,0.155,0.0167,9960,0.674,0.39,,2693,5543,4298,5451 -Dendrocnide moroides,denmor,Cape Tribulation,0.052,0.0312,26454,0.23,0.46,0.71,,2372,,2090 -Elaeocarpus grandis,elaang,Cape Tribulation,0.122,0.0187,2762,0.499,0.47,3699,,2598,1748,4635 -Endiandra leptodendron,endlep,Cape Tribulation,0.106,0.018,3987,0.611,0.68,,1492,2412,2783,7477 -Endiandra microneura,endmic,Cape Tribulation,0.151,0.0177,3377,0.623,0.61,,3573,6344,3354,6235 -Gillbeea adenopetala,gilade,Cape Tribulation,0.126,0.0096,3678,0.43,0.46,15,,2863,3160,6549 -Haplostichanthus sp Coop. Ck,hapspp,Cape Tribulation,0.072,0.022,4685,0.668,0.36,,2430,12304,3282,2992 -Harpullia rhyticarpa,harrhy,Cape Tribulation,0.076,0.0174,40876,0.621,0.01,,,8971,5922,4669 -Hernandia albiflora,heralb,Cape Tribulation,0.069,0.0195,3806,0.447,0.33,,3123,4145,4643,6086 -Ixora biflora,ixobif,Cape Tribulation,0.081,0.01,2760,0.843,0.55,41.5,5244,3892,1969,8094 -Lasianthus strigosus,lasstr,Cape Tribulation,0.055,0.0158,3313,0.684,0.15,7,1841,5100,2379,2731 -Litsea leefeana,litlee,Cape Tribulation,0.13,0.0144,3917,0.549,0.68,263.4,3984,4141,3816,9645 -Macaranga tanarius,mactan,Cape Tribulation,0.104,0.0205,46676,0.344,0,,,3377,,3901 -Mallotus mollissimus,malmol,Cape Tribulation,0.063,0.0352,16716,0.373,0.32,31.25,1788,5580,5163,7944 -Medicosma sessiliflora,medses,Cape Tribulation,0.106,0.0153,8164,0.69,0.65,,2844,9332,6514,10298 -Melastoma cyanoides,melaff,Cape Tribulation,0.046,0.0208,4009,0.381,0.6,0.07,2960,4057,4661,6637 -Myristica insipida,myrins,Cape Tribulation,0.106,0.0185,8379,0.433,0.51,1612,,6929,4852,9273 -Pittosporum rubiginosum,pitrub,Cape Tribulation,0.065,0.0143,9931,0.728,0.28,27.94,7428,7459,5265,6548 -Psychotria dallachiana,psydal,Cape Tribulation,0.079,0.0177,2495,0.612,0.33,,4290,5666,4916,4761 -Quassia baileyana,quabai,Cape Tribulation,0.086,0.023,9624,0.501,0.42,,,5867,3216,5719 -Rockinghamia angustifolia,rocang,Cape Tribulation,0.108,0.0158,10636,0.455,0.39,19.38,,5862,4611,6098 -Syzygium gustavioides,syzgus,Cape Tribulation,0.167,0.0129,3590,0.521,0.59,48000,2833,3121,3047,6584 -Syzygium sayeri,syzsay,Cape Tribulation,0.131,0.0137,2645,0.485,0.65,841,3929,5767,4939,9836 -Trema aspera,treasp,Cape Tribulation,0.053,0.0299,2071,0.357,0.53,5.12,3578,5291,5440,6695 +name_original,AusTraits_key,SLA (cm2/g),SLA_units,leaf longevity,lifespan_units,individual_id +Eucalyptus grandis,Leuning_1991,90,cm2/g,5--15,mo,1 +Grevillea robusta,Bell_1985,97.8,cm2/g,152--364.8,d,1 +Castanospermum australe,Bell_1985,123.1,cm2/g,,,1 +Elaeocarpus angustifolius,Bell_1985,124.8,cm2/g,,,1 +Gardenia actinocarpa,Bevege_1978,223,cm2/g,,,1 +Xanthostemon chrysanthus,Bevege_1978,130,cm2/g,,,1 +Xanthostemon formosus,Bevege_1978,159,cm2/g,,,1 +Archidendron kanisii,Bevege_1978,181,cm2/g,,,1 +Archidendron whitei,Bevege_1978,230,cm2/g,60--300,d,1 +Gardenia ovularis,Lambert_1979,168,cm2/g,,,1 +Acacia aneura var. major,Lambert_1979,32.3,cm2/g,,,1 +Acacia kempeana,Lambert_1979,39.3,cm2/g,,,1 +Corymbia terminalis,Lambert_1979,36.2,cm2/g,,,1 +Hakea suberea,Lambert_1979,20,cm2/g,,,1 +Acacia lysiphloia,Lambert_1979,82.2,cm2/g,,,1 +Acacia neurocarpa,Lambert_1979,64.3,cm2/g,,,1 +Acacia shirleyi,Lambert_1979,57.3,cm2/g,,,1 +Corymbia dichromophloia,Meakins_0000,51.6,cm2/g,,,1 +Eucalyptus chlorophylla,Meakins_0000,41.7,cm2/g,,,1 +Grevillea wickhamii ssp aprica,Meakins_0000,63.9,cm2/g,,,1 +Acacia holosericea,Meakins_0000,105.4,cm2/g,,,1 +Acacia holosericea,Meakins_0000,75.9,cm2/g,,,2 +Corymbia foelscheana,Meakins_0000,58.8,cm2/g,,,1 +Corymbia foelscheana,Meakins_0000,62,cm2/g,,,2 +Corymbia foelscheana,Meakins_0000,55.7,cm2/g,,,3 +Eucalyptus patellaris,Meakins_0000,45.9,cm2/g,,,1 +Grevillea dimidiata,Meakins_0000,51.8,cm2/g,,,1 +Hakea arborescens,Meakins_0000,28,cm2/g,,,1 +Acacia auriculiformis,Meakins_0000,134,cm2/g,,,1 +Eucalyptus miniata,Meakins_0000,73.6,cm2/g,,,1 +Eucalyptus tetrodonta,Meakins_0000,56.5,cm2/g,,,1 +Grevillea pteridifolia,Meakins_0000,51,cm2/g,,,1 +Persoonia falcata,Meakins_0000,68.5,cm2/g,,,1 diff --git a/tests/testthat/examples/Test_2023_5/metadata.yml b/tests/testthat/examples/Test_2023_5/metadata.yml index e3e536d9..4b7ed91f 100644 --- a/tests/testthat/examples/Test_2023_5/metadata.yml +++ b/tests/testthat/examples/Test_2023_5/metadata.yml @@ -1,319 +1,110 @@ source: primary: - key: Test_2023_5 + key: Richards_2008 + bibtype: Unpublished + year: '2009' + author: Anna Richards and Ian J. Wright + title: 'Unpublished data: Transcription of Australian plant functional trait data + from Ian Wright''s collection of papers, Macquarie University' + original_01: + key: Bell_1985 + bibtype: Conference + year: '1985' + author: Bell + booktitle: Conference proceedings of N Australian mine rehab workshop 9 + title: Nutrient requirements for the establishment of native flora at Weipa + volume: .na + number: .na + pages: .na + original_02: + key: Bevege_1978 + bibtype: TechReport + year: '1978' + author: D. I. Bevege + institution: Queensland Department of Forestry + title: Biomass and nutrient distribution in indigenous forest ecosystems + volume: 6 + number: .na + pages: 20 + original_03: + key: Lambert_1979 + bibtype: Thesis + year: '1979' + author: M. J. Lambert + title: Sulphur relationships of native and exotic tree species + type: Masters + institution: Macquarie University, Sydney + secondary_01: + key: Leuning_1991 bibtype: Article - author: Daniel S. Falster, Mark Westoby - year: 2005 - title: Alternative height strategies among 45 dicot rain forest species from tropical - Queensland, Australia - journal: Journal of Ecology - volume: 93 - pages: 521--535 - publisher: Wiley-Blackwell - doi: 10.1111/j.0022-0477.2005.00992.x + year: '1991' + author: R. Leuning and R. N. Cromer and S. Rance + journal: Oecologia + title: Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus + grandis + volume: '88' + number: '4' + pages: 504--510 + doi: 10.1007/bf00317712 + secondary_02: + key: Meakins_0000 + bibtype: Unpublished + year: unknown + author: Meakins + title: 'Unpublished data: Study of Brindabella species' contributors: data_collectors: - - last_name: Falster - given_name: Daniel - ORCID: 0000-0002-9814-092X - affiliation: Evolution & Ecology Research Centre, School of Biological, Earth, - and Environmental Sciences, UNSW Sydney, Australia + - last_name: Richards + given_name: Anna + ORCID: 0000-0002-2934-5497 + affiliation: CSIRO Land and Water, Australia additional_role: contact - - last_name: Westoby - given_name: Mark - ORCID: 0000-0001-7690-4530 - affiliation: Department of Biological Sciences, Macquarie University, Australia - dataset_curators: Elizabeth Wenk + dataset_curators: Ian Wright dataset: data_is_long_format: no custom_R_code: .na - collection_date: 2004/2004 - taxon_name: Species - location_name: site - description: Investigation into trait values correlated with plant height along - light availability and successional gradients for far north Queensland species. + collection_date: unknown/2009 + taxon_name: name_original + location_name: .na + source_id: AusTraits_key + individual_id: individual_id + description: Collection of trait data on Australian plants compiled by Anna Richards + and Ian Wright from papers basis_of_record: field life_stage: adult - sampling_strategy: Nineteen species, ranging from early to late successional status, - were selected using published sources (Hopkins & Graham 1987; Osunkoya 1996; Hyland - et al. 1999). Species selected to represent the light gradient establish and mature - in closed forest, where successional species are assumed absent. For inclusion - in this set we required that a species was known to establish and persist at low - light levels, as indicated either by published sources (Hyland et al. 1999; Osunkoya - 1996) or by scientists familiar with the vegetation (A Graham, J Wells, CSIRO - Atherton; R Jensen). Twenty-six species, experiencing a range of light levels - at maturity, from high (canopy trees) to low light (understorey shrubs), were - included. - original_file: Falster & Westoby 2005 J Ecol appendix.doc + sampling_strategy: See the individual 'additional references' for the individual + study motivations. + original_file: The portion of 'Extra ozglop data OCT07 (iAN).xls' from pre-2000 + papers or from more recent papers with very few data points; most recent/larger + datasets within Ian and Anna's compilation are in AusTraits individually. notes: none -locations: - Atherton: - description: Tropical rain forest vegetation. - elevation (m): 800 - latitude (deg): -17.1166667 - longitude (deg): 145.65 - rainfall (mm): 2000 - Cape Tribulation: - description: Complex mesophyll vine forest in tropical rain forest. - elevation (m): 25 - latitude (deg): -16.1 - longitude (deg): 145.45 - rainfall (mm): 3500 +locations: .na contexts: .na traits: -- var_in: LMA (mg mm-2) - unit_in: mg/mm2 +- var_in: SLA (cm2/g) + unit_in: SLA_units trait_name: leaf_mass_per_area - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: '3' - methods: LMA was calculated as the leaf dry mass (oven-dried for 48 hours at 65 - deg C) divided by leaf size. It was measured on the first five fully expanded - leaves at the tip of each individual. -- var_in: Leaf nitrogen (mg mg-1) - unit_in: mg/mg - trait_name: leaf_N_per_dry_mass - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: '3' - methods: Leaves from all individuals per species were pooled and finely ground for - nitrogen analysis. Total nitrogen concentration (%) was measured using complete - combustion gas chromatography by Waite Analytical Services, Adelaide. The first - five fully expanded leaves at the tip of each individual were used for the analysis. -- var_in: leaf size (mm2) - unit_in: mm2 - trait_name: leaf_area - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: '3' - methods: Leaf size was calculated as the one-sided leaf area (flat bed scanner). - It was measured on the first five fully expanded leaves at the tip of each individual. -- var_in: wood density (mg mm-3) - unit_in: mg/mm3 - trait_name: wood_density - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: '3' - methods: Wood density was calculated using 40-60 mm stem segments taken 250 mm and - 1000 mm back along a branch from the branch tip. Fresh samples were refrigerated - before processing. After removing bark material, the volume of each wood sample - was determined using Archimedes' principle (Hacke et al. 2000). Samples were submerged - in a water-filled container on a balance. The weight change (mg) recorded during - submersion corresponds to the mass of water displaced, which can be converted - to a volume using the formula, displacement weight (mg)/0.998 (mg/mm3), where - 0.998 mg/mm3 is the density of water at 20 deg C. Samples were then dried for - 4 days at 60 deg C before weighing. -- var_in: branch mass fraction - unit_in: mg/mg - trait_name: branch_mass_fraction - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: '3' - methods: Branch mass fraction was calculated as the mass side branches/total mass, - on a carbon dry mass basis. The zero values are correct - these are plants with - no branches. -- var_in: Seed mass (mg) - unit_in: mg - trait_name: seed_dry_mass - entity_type: population + entity_type: individual value_type: mean basis_of_value: measurement replicates: unknown - methods: Mean oven-dried seed mass (including seed coat but excluding seed accessories) - was estimated for all species with available field material. In total, collections - for 17 of 47 species were made. Data for an additional 12 species were drawn from - published (Osunkoya et al. 1994; Grubb et al. 1998) and unpublished (P. Juniper, - CSIRO Atherton) sources. -- var_in: LASA10 - unit_in: mm2{leaf}/mm2{sapwood} - trait_name: huber_value - entity_type: population - value_type: mean + methods: unknown +- var_in: leaf longevity + unit_in: lifespan_units + trait_name: leaf_lifespan + entity_type: individual + value_type: bin basis_of_value: measurement - replicates: 3 - methods: 'Leaf area was determined for a shoot whose sapwood had a cross sectional - area of 10 mm2. In detail from Wright_2006, which used this data, No single best - point exists to compare traits such as LM/ SM, LA/SM and LA/SA when considering - a set of species that varies widely in canopy architecture and typical maximum - height (here, approximately 20 cm to 85 m). We have used several approaches (Table - 1). In one study, we made measurements on the terminal twigs of each species, - i.e. on a relatively standard developmental unit (Westoby and Wright 2003). For - species at Ash, GLP, Myall and TRF, traits were measured at each of several different - distances back down the stem from the branch tip (Falster and Westoby 2005a, 2005b - and unpublished, Pickup et al. 2005). At GHP, RHM and RHW, traits were measured - at a standard sapwood cross-sectional area (10 mm2; Pickup et al. 2005). For the - present re-analysis, we took the raw data from the previous studies and, for every - species possible, calculated patterns of leaf and stem deployment at two standard - points: at 250 mm distance from the branch tip (Ash, GLP, Myall and TRF) and at - 10 mm2 stem (Ash, Myall, TRF) or sapwood (GHP, GLP, RHM, RHW) crosssectional area - (250 mm or 10 mm2 formulation denoted as subscript in trait abbreviations). This - was done as follows. For each individual plant, total leaf and stem dry mass at - 250 mm distance was estimated by straightline interpolation from values measured - at the nearest sampling points on either side of this distance. As the dry mass - data tended to display non-linear (power) relationships with distance from the - branch tip, the interpolated values were calculated from log10-log10- transformed - data, then back-transformed to the original scale. The same approach was used - for interpolating data to the standard stem (or sapwood) cross-sectional area. - For individuals where measurements had not been made on either side of the desired - point but the nearest measurement had been made within 25 mm of 250 mm or 1 mm2 - of 10 mm2 cross-section (i.e. within 10% of the desired point), we extrapolated - (rather than interpolated) the measured data to the standard point. This allowed - us to include a number of individuals and species for which interpolation was - not possible. Still, several large-leaved, large-stemmed species from the TRF - site could not be included in the 10-mm2 crosssection dataset. No unusual tendencies - in analyses, including the extrapolated data, were seen in comparison to analyses - including interpolated data only (details not shown). To illustrate how species'' - morphology varied at the two standard sampling points, species-mean stem cross-sectional - area varied between 1.2 and 258 mm2 at 250 mm distance from the branch tip, while - the distance from the branch tip at which stem cross-sectional area reached 10 - mm2 varied from 64 to 995 mm.' -- var_in: LASA250 - unit_in: mm2{leaf}/mm2{sapwood} - trait_name: huber_value - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: 3 - methods: 'Leaf area was determined for a 250 mm branch segment and sapwood cross-sectional - area was determined where the branch was cut. In detail from Wright_2006, which - used this data, No single best point exists to compare traits such as LM/ SM, - LA/SM and LA/SA when considering a set of species that varies widely in canopy - architecture and typical maximum height (here, approximately 20 cm to 85 m). We - have used several approaches (Table 1). In one study, we made measurements on - the terminal twigs of each species, i.e. on a relatively standard developmental - unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and TRF, traits - were measured at each of several different distances back down the stem from the - branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup et al. 2005). - At GHP, RHM and RHW, traits were measured at a standard sapwood cross-sectional - area (10 mm2; Pickup et al. 2005). For the present re-analysis, we took the raw - data from the previous studies and, for every species possible, calculated patterns - of leaf and stem deployment at two standard points: at 250 mm distance from the - branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, Myall, TRF) or sapwood - (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 mm2 formulation denoted - as subscript in trait abbreviations). This was done as follows. For each individual - plant, total leaf and stem dry mass at 250 mm distance was estimated by straightline - interpolation from values measured at the nearest sampling points on either side - of this distance. As the dry mass data tended to display non-linear (power) relationships - with distance from the branch tip, the interpolated values were calculated from - log10-log10- transformed data, then back-transformed to the original scale. The - same approach was used for interpolating data to the standard stem (or sapwood) - cross-sectional area. For individuals where measurements had not been made on - either side of the desired point but the nearest measurement had been made within - 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within 10% of the desired - point), we extrapolated (rather than interpolated) the measured data to the standard - point. This allowed us to include a number of individuals and species for which - interpolation was not possible. Still, several large-leaved, large-stemmed species - from the TRF site could not be included in the 10-mm2 crosssection dataset. No - unusual tendencies in analyses, including the extrapolated data, were seen in - comparison to analyses including interpolated data only (details not shown). To - illustrate how species'' morphology varied at the two standard sampling points, - species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm - distance from the branch tip, while the distance from the branch tip at which - stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' -- var_in: LASA50 - unit_in: mm2{leaf}/mm2{sapwood} - trait_name: huber_value - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: 3 - methods: 'Leaf area was determined for a 50 mm branch segment and sapwood cross-sectional - area was determined where the branch was cut. In detail from Wright_2006, which - used this data, No single best point exists to compare traits such as LM/ SM, - LA/SM and LA/SA when considering a set of species that varies widely in canopy - architecture and typical maximum height (here, approximately 20 cm to 85 m). We - have used several approaches (Table 1). In one study, we made measurements on - the terminal twigs of each species, i.e. on a relatively standard developmental - unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and TRF, traits - were measured at each of several different distances back down the stem from the - branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup et al. 2005). - At GHP, RHM and RHW, traits were measured at a standard sapwood cross-sectional - area (10 mm2; Pickup et al. 2005). For the present re-analysis, we took the raw - data from the previous studies and, for every species possible, calculated patterns - of leaf and stem deployment at two standard points: at 250 mm distance from the - branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, Myall, TRF) or sapwood - (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 mm2 formulation denoted - as subscript in trait abbreviations). This was done as follows. For each individual - plant, total leaf and stem dry mass at 250 mm distance was estimated by straightline - interpolation from values measured at the nearest sampling points on either side - of this distance. As the dry mass data tended to display non-linear (power) relationships - with distance from the branch tip, the interpolated values were calculated from - log10-log10- transformed data, then back-transformed to the original scale. The - same approach was used for interpolating data to the standard stem (or sapwood) - cross-sectional area. For individuals where measurements had not been made on - either side of the desired point but the nearest measurement had been made within - 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within 10% of the desired - point), we extrapolated (rather than interpolated) the measured data to the standard - point. This allowed us to include a number of individuals and species for which - interpolation was not possible. Still, several large-leaved, large-stemmed species - from the TRF site could not be included in the 10-mm2 crosssection dataset. No - unusual tendencies in analyses, including the extrapolated data, were seen in - comparison to analyses including interpolated data only (details not shown). To - illustrate how species'' morphology varied at the two standard sampling points, - species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm - distance from the branch tip, while the distance from the branch tip at which - stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' -- var_in: LASA1000 - unit_in: mm2{leaf}/mm2{sapwood} - trait_name: huber_value - entity_type: population - value_type: mean - basis_of_value: measurement - replicates: 3 - methods: 'Leaf area was determined for a 1000 mm branch segment and sapwood cross-sectional - area was determined where the branch was cut. In detail from Wright_2006, which - used this data, No single best point exists to compare traits such as LM/ SM, - LA/SM and LA/SA when considering a set of species that varies widely in canopy - architecture and typical maximum height (here, approximately 20 cm to 85 m). We - have used several approaches (Table 1). In one study, we made measurements on - the terminal twigs of each species, i.e. on a relatively standard developmental - unit (Westoby and Wright 2003). For species at Ash, GLP, Myall and TRF, traits - were measured at each of several different distances back down the stem from the - branch tip (Falster and Westoby 2005a, 2005b and unpublished, Pickup et al. 2005). - At GHP, RHM and RHW, traits were measured at a standard sapwood cross-sectional - area (10 mm2; Pickup et al. 2005). For the present re-analysis, we took the raw - data from the previous studies and, for every species possible, calculated patterns - of leaf and stem deployment at two standard points: at 250 mm distance from the - branch tip (Ash, GLP, Myall and TRF) and at 10 mm2 stem (Ash, Myall, TRF) or sapwood - (GHP, GLP, RHM, RHW) crosssectional area (250 mm or 10 mm2 formulation denoted - as subscript in trait abbreviations). This was done as follows. For each individual - plant, total leaf and stem dry mass at 250 mm distance was estimated by straightline - interpolation from values measured at the nearest sampling points on either side - of this distance. As the dry mass data tended to display non-linear (power) relationships - with distance from the branch tip, the interpolated values were calculated from - log10-log10- transformed data, then back-transformed to the original scale. The - same approach was used for interpolating data to the standard stem (or sapwood) - cross-sectional area. For individuals where measurements had not been made on - either side of the desired point but the nearest measurement had been made within - 25 mm of 250 mm or 1 mm2 of 10 mm2 cross-section (i.e. within 10% of the desired - point), we extrapolated (rather than interpolated) the measured data to the standard - point. This allowed us to include a number of individuals and species for which - interpolation was not possible. Still, several large-leaved, large-stemmed species - from the TRF site could not be included in the 10-mm2 crosssection dataset. No - unusual tendencies in analyses, including the extrapolated data, were seen in - comparison to analyses including interpolated data only (details not shown). To - illustrate how species'' morphology varied at the two standard sampling points, - species-mean stem cross-sectional area varied between 1.2 and 258 mm2 at 250 mm - distance from the branch tip, while the distance from the branch tip at which - stem cross-sectional area reached 10 mm2 varied from 64 to 995 mm.' + replicates: unknown + methods: From Richards_2008_2 (unpublished); See original references, listed alphabetically + under 'additional references' substitutions: .na -taxonomic_updates: -- find: Homalanthus novoguineensis - replace: Homalanthus novo-guineensis - reason: Change spelling to align with known name in APC (Daniel Falster, 2020.05.22) - taxonomic_resolution: species -- find: Haplostichanthus sp Coop. Ck - replace: Haplostichanthus submontanus - reason: Align previous phrase name with current APC name (E. Wenk, 2020-05-25) - taxonomic_resolution: species -- find: Psychotria sp Utchee Creek - replace: Psychotria sp. Utchee Creek (H.Flecker NQNC5313) - reason: Align to name in APC (D Falster, 2020.05.23) - taxonomic_resolution: species +taxonomic_updates: .na exclude_observations: .na -questions: .na +questions: + additional_traits: Birk_1992 - has all reported values for nutrient addition treatments + as well; Feller - has root nutrient values for 2 species; Hopmans_1993 - additional + micronutrient data for wood and bark; Leigh_2003 - gas exchange data in chart, + if we get hold of the author; Leigh_2006 - lots of additional data if we contact + author; Leuning_1991 - lots of gas exchanges, Jmax, Vcmax, detailed leaf N & P + data if we contact author diff --git a/tests/testthat/examples/Test_2023_5/output/contexts.csv b/tests/testthat/examples/Test_2023_5/output/contexts.csv new file mode 100644 index 00000000..873507fd --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/contexts.csv @@ -0,0 +1 @@ +dataset_id,context_property,category,value,description,link_id,link_vals diff --git a/tests/testthat/examples/Test_2023_5/output/contributors.csv b/tests/testthat/examples/Test_2023_5/output/contributors.csv new file mode 100644 index 00000000..49519f1e --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/contributors.csv @@ -0,0 +1,2 @@ +dataset_id,last_name,given_name,ORCID,affiliation,additional_role +Test_2023_5,Richards,Anna,0000-0002-2934-5497,"CSIRO Land and Water, Australia",contact diff --git a/tests/testthat/examples/Test_2023_5/output/definitions.yml b/tests/testthat/examples/Test_2023_5/output/definitions.yml new file mode 100644 index 00000000..780216c1 --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/definitions.yml @@ -0,0 +1,34 @@ +leaf_mass_per_area: + label: Leaf mass per area + description: A leaf morphology trait [TO:0000748] which is the ratio [PATO:0001470] + of the leaf dry [PATO:0001824] mass [PATO:0000125] to the leaf [PO:0025034] area + [PATO:0001323], measured on an entire leaf, including the entire leaf lamina [PO:0020039] + and the petiole [PO:0020038].;The ratio of leaf dry mass to leaf area, measured + on an entire leaf including the petiole; LMA. (The inverse of specific leaf area, + SLA.) + comments: Leaf mass per area includes measurements submitted as `specific_leaf_area` + (SLA); they are simply inverted. Leaf mass per area is explicitly measured on + an entire leaf, including the petiole. Measurements made on a piece of the leaf + lamina, excluding petiole and midrib, are a separate trait `leaf_lamina_mass_per_area`. + If measurements are made on the entire leaf lamina, but the petiole is excluded, + this should be noted in the methods or under `measurement_remarks`. + type: numeric + units: g/m2 + allowed_values_min: 1.0 + allowed_values_max: 3000.0 + entity_URI: https://w3id.org/APD/traits/trait_0011230 +leaf_lifespan: + label: Leaf lifespan + description: The duration [PATO:0001309] that an individual leaf [PO:0025034] is + attached to the stem [PO:0009047] and is physiologically functional [PATO:0001510].;Duration + of time that an individual leaf is attached to the stem and physiologically functional; + leaf longevity. + comments: Leaf lifespan is the inverse of the rate of leaf turnover. For some species, + leaflets or other portions of a leaf may be censused rather than the entire leaf + lamina. Leaf lifespan can be censused as either the rate of shedding leaves (leaf + death) or the rate of formation of new leaves (leaf birth). + type: numeric + units: mo + allowed_values_min: 1.0 + allowed_values_max: 1000.0 + entity_URI: https://w3id.org/APD/traits/trait_0030025 diff --git a/tests/testthat/examples/Test_2023_5/output/excluded_data.csv b/tests/testthat/examples/Test_2023_5/output/excluded_data.csv new file mode 100644 index 00000000..547d5fdc --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/excluded_data.csv @@ -0,0 +1 @@ +error,dataset_id,taxon_name,observation_id,trait_name,value,unit,entity_type,value_type,basis_of_value,replicates,basis_of_record,life_stage,population_id,individual_id,repeat_measurements_id,temporal_context_id,source_id,location_id,entity_context_id,plot_context_id,treatment_context_id,collection_date,measurement_remarks,method_id,method_context_id,original_name diff --git a/tests/testthat/examples/Test_2023_5/output/locations.csv b/tests/testthat/examples/Test_2023_5/output/locations.csv new file mode 100644 index 00000000..612c4908 --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/locations.csv @@ -0,0 +1 @@ +dataset_id,location_id,location_name,location_property,value diff --git a/tests/testthat/examples/Test_2023_5/output/metadata.yml b/tests/testthat/examples/Test_2023_5/output/metadata.yml new file mode 100644 index 00000000..5dde7c3a --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/metadata.yml @@ -0,0 +1,86 @@ +title: 'AusTraits: a curated plant trait database for the Australian flora' +description: AusTraits is a transformative database, containing measurements on the + traits of Australia's plant taxa, standardised from hundreds of disconnected primary + sources. While this repository contains the harmonised data, the raw data and code + used to build the resource are also available on the project's GitHub repository,http://traitecoevo.github.io/traits.build. + Further information on the project is available in the associated publication and + at the project website https://austraits.org. +version: 5.0.0 +doi: 10.5281/zenodo.5112001 +structure_URI: https://github.com/traitecoevo/traits.build +geo_location: + geo_location_place: Australia + geodetic_datum: EPSG:4326 +language: en +related_identifiers: +- related_identifier_type: url + identifier: https://github.com/traitecoevo/traits.build/tree/v3.0.2 + relation_type: isCompiledBy + resource_type: dataset +- related_identifier_type: doi + identifier: 10.1038/s41597-021-01006-6 + relation_type: isCitedBy + resource_type: publication-article +references: 'Falster, Gallagher et al (2021) *AusTraits, a curated plant trait database + for the Australian flora*. Scientific Data 8: 254, https://doi.org/10.1038/s41597-021-01006-6' +publisher: Zenodo +publication_date: 27 Nov 2022 +license: + rights: CC-BY-4.0 + rights_holder: Falster, Daniel + rights_URI: https://creativecommons.org/licenses/by/4.0/ + description: Under this license, the material can be copied and redistributed in + any medium or format. It can be remixed, transformed, and built upon for any purpose, + even commercially. Re-users must give appropriate credit, provide a link to the + license, and indicate if changes were made. Re-users may not apply legal terms + or technological measures that legally restrict others from doing anything the + license permits. +subject: + subject_scheme: ANZSRC Field of Research + scheme_URI: https://linked.data.gov.au/def/anzsrc-for/2020/ + value_URI: + - https://linked.data.gov.au/def/anzsrc-for/2020/3103 + - https://linked.data.gov.au/def/anzsrc-for/2020/3104 + - https://linked.data.gov.au/def/anzsrc-for/2020/4104 + - https://linked.data.gov.au/def/anzsrc-for/2020/300703 + - https://linked.data.gov.au/def/anzsrc-for/2020/060705 + - https://linked.data.gov.au/def/anzsrc-for/2020/050202 + - https://linked.data.gov.au/def/anzsrc-for/2020/060208 + - https://linked.data.gov.au/def/anzsrc-for/2020/069902 +funding_reference: +- funder_name: Australian Research Data Commons (ARDC) + award_IRI: doi.org/10.47486/DP720 + award_number: DP720 + award_title: AusTraits, A national database on the traits of Australia's complete + flora. +- funder_name: Australian Research Data Commons (ARDC) + award_IRI: doi.org/10.47486/TD044 + award_number: TD044 + award_title: AusTraits, A national database on the traits of Australia's complete + flora. +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/DE170100208 + award_number: DE170100208 + award_title: Discovery Early Career Researcher Award +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/FT160100113 + award_number: FT160100113 + award_title: Future Fellowship +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/FT100100910 + award_number: FT100100910 + award_title: Future Fellowship +creators: +- last_name: Falster + given_name: Daniel + ORCID: 0000-0002-9814-092X + affiliation: Evolution & Ecology Research Centre, UNSW Sydney, Australia +- last_name: Gallagher + given_name: Rachael + ORCID: 0000-0002-4680-8115 + affiliation: Hawkesbury Institute for the Environment, Western Sydney University, + Australia +- last_name: Elizabeth + given_name: Wenk + ORCID: 0000-0001-5640-5910 + affiliation: Evolution & Ecology Research Centre, UNSW Sydney, Australia diff --git a/tests/testthat/examples/Test_2023_5/output/methods.csv b/tests/testthat/examples/Test_2023_5/output/methods.csv new file mode 100644 index 00000000..82a66e68 --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/methods.csv @@ -0,0 +1,3 @@ +dataset_id,trait_name,methods,method_id,description,sampling_strategy,source_primary_key,source_primary_citation,source_secondary_key,source_secondary_citation,source_original_dataset_key,source_original_dataset_citation,data_collectors,assistants,dataset_curators +Test_2023_5,leaf_mass_per_area,unknown,01,Collection of trait data on Australian plants compiled by Anna Richards and Ian Wright from papers,See the individual 'additional references' for the individual study motivations.,Richards_2008,"A. Richards and I. J. Wright. ""Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University"". 2009.",Leuning_1991; Meakins_0000,"R. Leuning, R. N. Cromer, and S. Rance. ""Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis"". _Oecologia_ 88.4 (1991), pp. 504-510. doi: [10.1007/bf00317712](https://doi.org/10.1007%2Fbf00317712); Meakins. ""Unpublished data: Study of Brindabella species"".",Bell_1985; Bevege_1978; Lambert_1979,"Bell. ""Nutrient requirements for the establishment of native flora at Weipa"". In: _Conference proceedings of N Australian mine rehab workshop 9_. 1985; D. I. Bevege. _Biomass and nutrient distribution in indigenous forest ecosystems_. Tech. rep. Queensland Department of Forestry, 1978, p. 20; M. J. Lambert. ""Sulphur relationships of native and exotic tree species"". Masters. Macquarie University, Sydney, 1979.",Anna Richards (contact),,Ian Wright +Test_2023_5,leaf_lifespan,"From Richards_2008_2 (unpublished); See original references, listed alphabetically under 'additional references'",01,Collection of trait data on Australian plants compiled by Anna Richards and Ian Wright from papers,See the individual 'additional references' for the individual study motivations.,Richards_2008,"A. Richards and I. J. Wright. ""Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University"". 2009.",Leuning_1991; Meakins_0000,"R. Leuning, R. N. Cromer, and S. Rance. ""Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis"". _Oecologia_ 88.4 (1991), pp. 504-510. doi: [10.1007/bf00317712](https://doi.org/10.1007%2Fbf00317712); Meakins. ""Unpublished data: Study of Brindabella species"".",Bell_1985; Bevege_1978; Lambert_1979,"Bell. ""Nutrient requirements for the establishment of native flora at Weipa"". In: _Conference proceedings of N Australian mine rehab workshop 9_. 1985; D. I. Bevege. _Biomass and nutrient distribution in indigenous forest ecosystems_. Tech. rep. Queensland Department of Forestry, 1978, p. 20; M. J. Lambert. ""Sulphur relationships of native and exotic tree species"". Masters. Macquarie University, Sydney, 1979.",Anna Richards (contact),,Ian Wright diff --git a/tests/testthat/examples/Test_2023_5/output/sources.bib b/tests/testthat/examples/Test_2023_5/output/sources.bib new file mode 100644 index 00000000..561a2f91 --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/sources.bib @@ -0,0 +1,46 @@ +@Unpublished{Richards_2008, + year = {2009}, + author = {Anna Richards and Ian J. Wright}, + title = {{Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University}}, +} + +@Conference{Bell_1985, + year = {1985}, + author = {{Bell}}, + booktitle = {Conference proceedings of N Australian mine rehab workshop 9}, + title = {{Nutrient requirements for the establishment of native flora at Weipa}}, +} + +@TechReport{Bevege_1978, + year = {1978}, + author = {D. I. Bevege}, + institution = {Queensland Department of Forestry}, + title = {{Biomass and nutrient distribution in indigenous forest ecosystems}}, + volume = {6}, + pages = {20}, +} + +@Thesis{Lambert_1979, + year = {1979}, + author = {M. J. Lambert}, + title = {{Sulphur relationships of native and exotic tree species}}, + type = {Masters}, + institution = {Macquarie University, Sydney}, +} + +@Article{Leuning_1991, + year = {1991}, + author = {R. Leuning and R. N. Cromer and S. Rance}, + journal = {Oecologia}, + title = {{Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis}}, + volume = {88}, + number = {4}, + pages = {504--510}, + doi = {10.1007/bf00317712}, +} + +@Unpublished{Meakins_0000, + year = {unknown}, + author = {{Meakins}}, + title = {{Unpublished data: Study of Brindabella species}}, +} diff --git a/tests/testthat/examples/Test_2023_5/output/taxa.csv b/tests/testthat/examples/Test_2023_5/output/taxa.csv new file mode 100644 index 00000000..10c289ce --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/taxa.csv @@ -0,0 +1,31 @@ +original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means +Acacia aneura var. major,Acacia aneura var. major,,Acacia,Fabaceae,variety,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Acacia aneura var. major Pedley,https://id.biodiversity.org.au/node/apni/2888234,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/169532,Acacia aneura var. major,https://id.biodiversity.org.au/name/apni/230757,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia aneura var. major,Acacia aneura,native +Acacia auriculiformis,Acacia auriculiformis,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT, Qld",Acacia auriculiformis A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2900508,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58974,Acacia auriculiformis,https://id.biodiversity.org.au/name/apni/58974,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia auriculiformis,native and naturalised +Acacia holosericea,Acacia holosericea,Acacia colei (pro parte misapplied) | Acacia colei (misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia holosericea A.Cunn. ex G.Don,https://id.biodiversity.org.au/node/apni/2908330,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/64393,Acacia holosericea [alternative possible names: Acacia colei (pro parte misapplied) | Acacia colei (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia holosericea,native +Acacia kempeana,Acacia kempeana,Acacia sibirica (pro parte misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA",Acacia kempeana F.Muell.,https://id.biodiversity.org.au/taxon/apni/51436560,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/65035,Acacia kempeana [alternative possible names: Acacia sibirica (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia kempeana,native +Acacia lysiphloia,Acacia lysiphloia,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia lysiphloia F.Muell.,https://id.biodiversity.org.au/node/apni/2898828,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/66472,Acacia lysiphloia,https://id.biodiversity.org.au/name/apni/66472,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia lysiphloia,native +Acacia neurocarpa,Acacia neurocarpa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT",Acacia neurocarpa A.Cunn. ex Hook.,https://id.biodiversity.org.au/taxon/apni/51286994,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/67333,Acacia neurocarpa,https://id.biodiversity.org.au/name/apni/67333,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia neurocarpa,native +Acacia shirleyi,Acacia shirleyi,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Acacia shirleyi Maiden,https://id.biodiversity.org.au/node/apni/2897282,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/70301,Acacia shirleyi,https://id.biodiversity.org.au/name/apni/70301,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia shirleyi,native +Archidendron kanisii,Archidendron kanisii,,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron kanisii R.S.Cowan,https://id.biodiversity.org.au/node/apni/2910703,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/154409,Archidendron kanisii,https://id.biodiversity.org.au/name/apni/154409,https://id.biodiversity.org.au/taxon/apni/51702961,,Archidendron kanisii,native +Archidendron whitei,Archidendron whitei,,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron whitei I.C.Nielsen,https://id.biodiversity.org.au/node/apni/2895435,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/116851,Archidendron whitei,https://id.biodiversity.org.au/name/apni/116851,https://id.biodiversity.org.au/taxon/apni/51702961,,Archidendron whitei,native +Castanospermum australe,Castanospermum australe,,Castanospermum,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, NI (doubtfully naturalised)",Castanospermum australe A.Cunn. ex Mudie,https://id.biodiversity.org.au/node/apni/2894943,https://id.biodiversity.org.au/node/apni/7226268,https://id.biodiversity.org.au/name/apni/196675,Castanospermum australe,https://id.biodiversity.org.au/name/apni/196675,https://id.biodiversity.org.au/taxon/apni/51702961,,Castanospermum australe,native and naturalised +Corymbia dichromophloia,Corymbia dichromophloia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Corymbia dichromophloia (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2902117,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119396,Corymbia dichromophloia,https://id.biodiversity.org.au/name/apni/119396,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia dichromophloia,native +Corymbia foelscheana,Corymbia foelscheana,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT",Corymbia foelscheana (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2892950,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119404,Corymbia foelscheana,https://id.biodiversity.org.au/name/apni/119404,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia foelscheana,native +Corymbia terminalis,Corymbia terminalis,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Corymbia terminalis (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/7549846,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119435,Corymbia terminalis,https://id.biodiversity.org.au/name/apni/119435,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia terminalis,native +Elaeocarpus angustifolius,Elaeocarpus angustifolius,Elaeocarpus grandis (pro parte misapplied),Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,NT,Elaeocarpus angustifolius Blume,https://id.biodiversity.org.au/node/apni/2909850,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115318,Elaeocarpus angustifolius [alternative possible names: Elaeocarpus grandis (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51632282,,Elaeocarpus angustifolius,native +Eucalyptus chlorophylla,Eucalyptus chlorophylla,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus chlorophylla Brooker & Done,https://id.biodiversity.org.au/node/apni/2893400,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/112391,Eucalyptus chlorophylla,https://id.biodiversity.org.au/name/apni/112391,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus chlorophylla,native +Eucalyptus grandis,Eucalyptus grandis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), Qld, NSW",Eucalyptus grandis W.Hill,https://id.biodiversity.org.au/taxon/apni/51439812,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/75405,Eucalyptus grandis,https://id.biodiversity.org.au/name/apni/75405,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus grandis,native and naturalised +Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus miniata,native +Eucalyptus patellaris,Eucalyptus patellaris,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NT,Eucalyptus patellaris F.Muell.,https://id.biodiversity.org.au/node/apni/2906207,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/87496,Eucalyptus patellaris,https://id.biodiversity.org.au/name/apni/87496,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus patellaris,native +Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus tetrodonta,native +Gardenia actinocarpa,Gardenia actinocarpa,,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia actinocarpa Puttock,https://id.biodiversity.org.au/taxon/apni/51293926,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/74954,Gardenia actinocarpa,https://id.biodiversity.org.au/name/apni/74954,https://id.biodiversity.org.au/taxon/apni/51446612,,Gardenia actinocarpa,native +Gardenia ovularis,Gardenia ovularis,,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia ovularis F.M.Bailey,https://id.biodiversity.org.au/node/apni/2895410,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/75259,Gardenia ovularis,https://id.biodiversity.org.au/name/apni/75259,https://id.biodiversity.org.au/taxon/apni/51446612,,Gardenia ovularis,native +Grevillea dimidiata,Grevillea dimidiata,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT",Grevillea dimidiata F.Muell.,https://id.biodiversity.org.au/node/apni/2901789,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/61434,Grevillea dimidiata,https://id.biodiversity.org.au/name/apni/61434,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea dimidiata,native +Grevillea pteridifolia,Grevillea pteridifolia,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Grevillea pteridifolia Knight,https://id.biodiversity.org.au/node/apni/2910744,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/111324,Grevillea pteridifolia,https://id.biodiversity.org.au/name/apni/111324,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea pteridifolia,native +Grevillea robusta,Grevillea robusta,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW (native and naturalised), LHI (naturalised), NI (naturalised)",Grevillea robusta A.Cunn. ex R.Br.,https://id.biodiversity.org.au/node/apni/2918082,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/55137,Grevillea robusta,https://id.biodiversity.org.au/name/apni/55137,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea robusta,native and naturalised +,Grevillea wickhamii ssp aprica,,,,,,,,,,,,,,,,,, +Hakea arborescens,Hakea arborescens,,Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Hakea arborescens R.Br.,https://id.biodiversity.org.au/node/apni/2897149,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/76681,Hakea arborescens,https://id.biodiversity.org.au/name/apni/76681,https://id.biodiversity.org.au/taxon/apni/51732901,,Hakea arborescens,native +Hakea suberea,Hakea lorea subsp. lorea,,Hakea,Proteaceae,subspecies,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Hakea lorea (R.Br.) R.Br. subsp. lorea,https://id.biodiversity.org.au/node/apni/2918427,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/162920,Hakea lorea subsp. lorea,https://id.biodiversity.org.au/name/apni/99787,https://id.biodiversity.org.au/taxon/apni/51732901,Hakea lorea subsp. lorea,Hakea lorea,native +Persoonia falcata,Persoonia falcata,,Persoonia,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Persoonia falcata R.Br.,https://id.biodiversity.org.au/node/apni/2904820,https://id.biodiversity.org.au/taxon/apni/51429033,https://id.biodiversity.org.au/name/apni/112478,Persoonia falcata,https://id.biodiversity.org.au/name/apni/112478,https://id.biodiversity.org.au/taxon/apni/51732901,,Persoonia falcata,native +Xanthostemon chrysanthus,Xanthostemon chrysanthus,,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon chrysanthus (F.Muell.) Benth.,https://id.biodiversity.org.au/node/apni/2920567,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/55063,Xanthostemon chrysanthus,https://id.biodiversity.org.au/name/apni/55063,https://id.biodiversity.org.au/taxon/apni/51738744,,Xanthostemon chrysanthus,native +Xanthostemon formosus,Xanthostemon formosus,,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon formosus Peter G.Wilson,https://id.biodiversity.org.au/taxon/apni/51440419,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/117195,Xanthostemon formosus,https://id.biodiversity.org.au/name/apni/117195,https://id.biodiversity.org.au/taxon/apni/51738744,,Xanthostemon formosus,native diff --git a/tests/testthat/examples/Test_2023_5/output/taxonomic_updates.csv b/tests/testthat/examples/Test_2023_5/output/taxonomic_updates.csv new file mode 100644 index 00000000..3317e35b --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/taxonomic_updates.csv @@ -0,0 +1,31 @@ +dataset_id,original_name,aligned_name,taxonomic_resolution,taxon_name +Test_2023_5,Acacia aneura var. major,Acacia aneura var. major,,Acacia aneura var. major +Test_2023_5,Acacia auriculiformis,Acacia auriculiformis,,Acacia auriculiformis +Test_2023_5,Acacia holosericea,Acacia holosericea,,Acacia holosericea +Test_2023_5,Acacia kempeana,Acacia kempeana,,Acacia kempeana +Test_2023_5,Acacia lysiphloia,Acacia lysiphloia,,Acacia lysiphloia +Test_2023_5,Acacia neurocarpa,Acacia neurocarpa,,Acacia neurocarpa +Test_2023_5,Acacia shirleyi,Acacia shirleyi,,Acacia shirleyi +Test_2023_5,Archidendron kanisii,Archidendron kanisii,,Archidendron kanisii +Test_2023_5,Archidendron whitei,Archidendron whitei,,Archidendron whitei +Test_2023_5,Castanospermum australe,Castanospermum australe,,Castanospermum australe +Test_2023_5,Corymbia dichromophloia,Corymbia dichromophloia,,Corymbia dichromophloia +Test_2023_5,Corymbia foelscheana,Corymbia foelscheana,,Corymbia foelscheana +Test_2023_5,Corymbia terminalis,Corymbia terminalis,,Corymbia terminalis +Test_2023_5,Elaeocarpus angustifolius,Elaeocarpus angustifolius,,Elaeocarpus angustifolius +Test_2023_5,Eucalyptus chlorophylla,Eucalyptus chlorophylla,,Eucalyptus chlorophylla +Test_2023_5,Eucalyptus grandis,Eucalyptus grandis,,Eucalyptus grandis +Test_2023_5,Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus miniata +Test_2023_5,Eucalyptus patellaris,Eucalyptus patellaris,,Eucalyptus patellaris +Test_2023_5,Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus tetrodonta +Test_2023_5,Gardenia actinocarpa,Gardenia actinocarpa,,Gardenia actinocarpa +Test_2023_5,Gardenia ovularis,Gardenia ovularis,,Gardenia ovularis +Test_2023_5,Grevillea dimidiata,Grevillea dimidiata,,Grevillea dimidiata +Test_2023_5,Grevillea pteridifolia,Grevillea pteridifolia,,Grevillea pteridifolia +Test_2023_5,Grevillea robusta,Grevillea robusta,,Grevillea robusta +Test_2023_5,Grevillea wickhamii ssp aprica,Grevillea wickhamii ssp aprica,, +Test_2023_5,Hakea arborescens,Hakea arborescens,,Hakea arborescens +Test_2023_5,Hakea suberea,Hakea suberea,,Hakea lorea subsp. lorea +Test_2023_5,Persoonia falcata,Persoonia falcata,,Persoonia falcata +Test_2023_5,Xanthostemon chrysanthus,Xanthostemon chrysanthus,,Xanthostemon chrysanthus +Test_2023_5,Xanthostemon formosus,Xanthostemon formosus,,Xanthostemon formosus diff --git a/tests/testthat/examples/Test_2023_5/output/traits.csv b/tests/testthat/examples/Test_2023_5/output/traits.csv new file mode 100644 index 00000000..89481b17 --- /dev/null +++ b/tests/testthat/examples/Test_2023_5/output/traits.csv @@ -0,0 +1,37 @@ +dataset_id,taxon_name,observation_id,trait_name,value,unit,entity_type,value_type,basis_of_value,replicates,basis_of_record,life_stage,population_id,individual_id,repeat_measurements_id,temporal_context_id,source_id,location_id,entity_context_id,plot_context_id,treatment_context_id,collection_date,measurement_remarks,method_id,method_context_id,original_name +Test_2023_5,Acacia aneura var. major,01,leaf_mass_per_area,309.597523219814,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Acacia aneura var. major +Test_2023_5,Acacia auriculiformis,02,leaf_mass_per_area,74.6268656716418,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Acacia auriculiformis +Test_2023_5,Acacia holosericea,03,leaf_mass_per_area,94.876660341556,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Acacia holosericea +Test_2023_5,Acacia holosericea,04,leaf_mass_per_area,131.752305665349,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,02,,,Meakins_0000,,,,,unknown/2009,,01,,Acacia holosericea +Test_2023_5,Acacia kempeana,05,leaf_mass_per_area,254.452926208651,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Acacia kempeana +Test_2023_5,Acacia lysiphloia,06,leaf_mass_per_area,121.654501216545,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Acacia lysiphloia +Test_2023_5,Acacia neurocarpa,07,leaf_mass_per_area,155.52099533437,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Acacia neurocarpa +Test_2023_5,Acacia shirleyi,08,leaf_mass_per_area,174.520069808028,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Acacia shirleyi +Test_2023_5,Archidendron kanisii,09,leaf_mass_per_area,55.2486187845304,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Archidendron kanisii +Test_2023_5,Archidendron whitei,10,leaf_lifespan,1.97260057797197--9.86300288985985,mo,individual,bin,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Archidendron whitei +Test_2023_5,Archidendron whitei,10,leaf_mass_per_area,43.4782608695652,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Archidendron whitei +Test_2023_5,Castanospermum australe,11,leaf_mass_per_area,81.2347684809098,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Castanospermum australe +Test_2023_5,Corymbia dichromophloia,12,leaf_mass_per_area,193.798449612403,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Corymbia dichromophloia +Test_2023_5,Corymbia foelscheana,13,leaf_mass_per_area,170.068027210884,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_5,Corymbia foelscheana,14,leaf_mass_per_area,161.290322580645,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,02,,,Meakins_0000,,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_5,Corymbia foelscheana,15,leaf_mass_per_area,179.533213644524,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,03,,,Meakins_0000,,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_5,Corymbia terminalis,16,leaf_mass_per_area,276.243093922652,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Corymbia terminalis +Test_2023_5,Elaeocarpus angustifolius,17,leaf_mass_per_area,80.1282051282051,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Elaeocarpus angustifolius +Test_2023_5,Eucalyptus chlorophylla,18,leaf_mass_per_area,239.808153477218,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Eucalyptus chlorophylla +Test_2023_5,Eucalyptus grandis,19,leaf_lifespan,5--15,mo,individual,bin,measurement,unknown,field,adult,pop_unk,01,,,Leuning_1991,,,,,unknown/2009,,01,,Eucalyptus grandis +Test_2023_5,Eucalyptus grandis,19,leaf_mass_per_area,111.111111111111,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Leuning_1991,,,,,unknown/2009,,01,,Eucalyptus grandis +Test_2023_5,Eucalyptus miniata,20,leaf_mass_per_area,135.869565217391,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Eucalyptus miniata +Test_2023_5,Eucalyptus patellaris,21,leaf_mass_per_area,217.864923747277,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Eucalyptus patellaris +Test_2023_5,Eucalyptus tetrodonta,22,leaf_mass_per_area,176.991150442478,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Eucalyptus tetrodonta +Test_2023_5,Gardenia actinocarpa,23,leaf_mass_per_area,44.8430493273543,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Gardenia actinocarpa +Test_2023_5,Gardenia ovularis,24,leaf_mass_per_area,59.5238095238095,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Gardenia ovularis +Test_2023_5,Grevillea dimidiata,25,leaf_mass_per_area,193.050193050193,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Grevillea dimidiata +Test_2023_5,Grevillea pteridifolia,26,leaf_mass_per_area,196.078431372549,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Grevillea pteridifolia +Test_2023_5,Grevillea robusta,27,leaf_lifespan,4.99725479752899--11.9934115140696,mo,individual,bin,measurement,unknown,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Grevillea robusta +Test_2023_5,Grevillea robusta,27,leaf_mass_per_area,102.249488752556,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Grevillea robusta +Test_2023_5,Grevillea wickhamii ssp aprica,28,leaf_mass_per_area,156.494522691706,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Grevillea wickhamii ssp aprica +Test_2023_5,Hakea arborescens,29,leaf_mass_per_area,357.142857142857,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Hakea arborescens +Test_2023_5,Hakea lorea subsp. lorea,30,leaf_mass_per_area,500,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Lambert_1979,,,,,unknown/2009,,01,,Hakea suberea +Test_2023_5,Persoonia falcata,31,leaf_mass_per_area,145.985401459854,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Meakins_0000,,,,,unknown/2009,,01,,Persoonia falcata +Test_2023_5,Xanthostemon chrysanthus,32,leaf_mass_per_area,76.9230769230769,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Xanthostemon chrysanthus +Test_2023_5,Xanthostemon formosus,33,leaf_mass_per_area,62.8930817610063,g/m2,individual,mean,measurement,unknown,field,adult,pop_unk,01,,,Bevege_1978,,,,,unknown/2009,,01,,Xanthostemon formosus diff --git a/tests/testthat/examples/Test_2023_6/README.md b/tests/testthat/examples/Test_2023_6/README.md index 5d065ada..5d8a98d3 100644 --- a/tests/testthat/examples/Test_2023_6/README.md +++ b/tests/testthat/examples/Test_2023_6/README.md @@ -3,10 +3,14 @@ This dataset is for testing: - `individual_id` for long datasets -- Locations (latitude and longitude ranges instead of latitude and longitude points) - Different `bibtype`s and secondary and original sources (also check methods table) +- Locations (latitude and longitude ranges instead of latitude and longitude points) +- Check `observation_id` is different for different locations (Eucalyptus grandis) and the same for the same location (Archidendron whitei) or no location (Grevillea robusta) - Replicates in a mix of character and numeric format -Test_2023_6 is a copy of X with the following modifications: +Test_2023_6 is a copy of Richards_2008 modified for Test_2023_5 with the following modifications: +- Test_2023_5 pivoted to long format +- Added locations with latitude and longitude ranges +- Added replicates in metadata with character and numeric format See output/ for expected output files. diff --git a/tests/testthat/examples/Test_2023_6/data.csv b/tests/testthat/examples/Test_2023_6/data.csv new file mode 100644 index 00000000..2f34090e --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/data.csv @@ -0,0 +1,37 @@ +name_original,AusTraits_key,SLA_units,lifespan_units,individual_id,trait_name,value,location_name +Eucalyptus grandis,Leuning_1991,cm2/g,mo,1,SLA (cm2/g),90,location_1 +Eucalyptus grandis,Leuning_1991,cm2/g,mo,1,leaf longevity,5--15,location_2 +Grevillea robusta,Bell_1985,cm2/g,d,1,SLA (cm2/g),97.8, +Grevillea robusta,Bell_1985,cm2/g,d,1,leaf longevity,152--364.8, +Castanospermum australe,Bell_1985,cm2/g,NA,1,SLA (cm2/g),123.1,location_1 +Elaeocarpus angustifolius,Bell_1985,cm2/g,NA,1,SLA (cm2/g),124.8,location_1 +Gardenia actinocarpa,Bevege_1978,cm2/g,NA,1,SLA (cm2/g),223,location_1 +Xanthostemon chrysanthus,Bevege_1978,cm2/g,NA,1,SLA (cm2/g),130,location_1 +Xanthostemon formosus,Bevege_1978,cm2/g,NA,1,SLA (cm2/g),159,location_1 +Archidendron kanisii,Bevege_1978,cm2/g,NA,1,SLA (cm2/g),181,location_1 +Archidendron whitei,Bevege_1978,cm2/g,d,1,SLA (cm2/g),230,location_1 +Archidendron whitei,Bevege_1978,cm2/g,d,1,leaf longevity,60--300,location_1 +Gardenia ovularis,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),168,location_1 +Acacia aneura var. major,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),32.3,location_1 +Acacia kempeana,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),39.3,location_1 +Corymbia terminalis,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),36.2,location_1 +Hakea suberea,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),20,location_1 +Acacia lysiphloia,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),82.2,location_1 +Acacia neurocarpa,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),64.3,location_1 +Acacia shirleyi,Lambert_1979,cm2/g,NA,1,SLA (cm2/g),57.3,location_1 +Corymbia dichromophloia,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),51.6,location_1 +Eucalyptus chlorophylla,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),41.7,location_1 +Grevillea wickhamii ssp aprica,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),63.9,location_1 +Acacia holosericea,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),105.4,location_1 +Acacia holosericea,Meakins_0000,cm2/g,NA,2,SLA (cm2/g),75.9,location_1 +Corymbia foelscheana,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),58.8,location_1 +Corymbia foelscheana,Meakins_0000,cm2/g,NA,2,SLA (cm2/g),62,location_1 +Corymbia foelscheana,Meakins_0000,cm2/g,NA,3,SLA (cm2/g),55.7,location_1 +Eucalyptus patellaris,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),45.9,location_1 +Grevillea dimidiata,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),51.8,location_1 +Hakea arborescens,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),28,location_1 +Acacia auriculiformis,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),134,location_1 +Eucalyptus miniata,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),73.6,location_1 +Eucalyptus tetrodonta,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),56.5,location_1 +Grevillea pteridifolia,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),51,location_1 +Persoonia falcata,Meakins_0000,cm2/g,NA,1,SLA (cm2/g),68.5,location_1 diff --git a/tests/testthat/examples/Test_2023_6/metadata.yml b/tests/testthat/examples/Test_2023_6/metadata.yml new file mode 100644 index 00000000..aa9b0ccf --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/metadata.yml @@ -0,0 +1,120 @@ +source: + primary: + key: Richards_2008 + bibtype: Unpublished + year: '2009' + author: Anna Richards and Ian J. Wright + title: 'Unpublished data: Transcription of Australian plant functional trait data + from Ian Wright''s collection of papers, Macquarie University' + original_01: + key: Bell_1985 + bibtype: Conference + year: '1985' + author: Bell + booktitle: Conference proceedings of N Australian mine rehab workshop 9 + title: Nutrient requirements for the establishment of native flora at Weipa + volume: .na + number: .na + pages: .na + original_02: + key: Bevege_1978 + bibtype: TechReport + year: '1978' + author: D. I. Bevege + institution: Queensland Department of Forestry + title: Biomass and nutrient distribution in indigenous forest ecosystems + volume: 6 + number: .na + pages: 20 + original_03: + key: Lambert_1979 + bibtype: Thesis + year: '1979' + author: M. J. Lambert + title: Sulphur relationships of native and exotic tree species + type: Masters + institution: Macquarie University, Sydney + secondary_01: + key: Leuning_1991 + bibtype: Article + year: '1991' + author: R. Leuning and R. N. Cromer and S. Rance + journal: Oecologia + title: Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus + grandis + volume: '88' + number: '4' + pages: 504--510 + doi: 10.1007/bf00317712 + secondary_02: + key: Meakins_0000 + bibtype: Unpublished + year: unknown + author: Meakins + title: 'Unpublished data: Study of Brindabella species' +contributors: + data_collectors: + - last_name: Richards + given_name: Anna + ORCID: 0000-0002-2934-5497 + affiliation: CSIRO Land and Water, Australia + additional_role: contact + dataset_curators: Ian Wright +dataset: + data_is_long_format: yes + custom_R_code: .na + collection_date: unknown/2009 + taxon_name: name_original + trait_name: trait_name + value: value + location_name: location_name + source_id: AusTraits_key + individual_id: individual_id + description: Collection of trait data on Australian plants compiled by Anna Richards + and Ian Wright from papers + basis_of_record: field + life_stage: adult + sampling_strategy: See the individual 'additional references' for the individual + study motivations. + original_file: The portion of 'Extra ozglop data OCT07 (iAN).xls' from pre-2000 + papers or from more recent papers with very few data points; most recent/larger + datasets within Ian and Anna's compilation are in AusTraits individually. + notes: none +locations: + location_1: + latitude range (deg): -27.5 to -34.5 + longitude range (deg): 114 to 122 + description: First made-up location for testing + location_2: + latitude range (deg): -11 to -26 + longitude range (deg): 129 to 138 + description: Second made-up location for testing +contexts: .na +traits: +- var_in: SLA (cm2/g) + unit_in: SLA_units + trait_name: leaf_mass_per_area + entity_type: individual + value_type: mean + basis_of_value: measurement + replicates: 3 + methods: unknown +- var_in: leaf longevity + unit_in: lifespan_units + trait_name: leaf_lifespan + entity_type: individual + value_type: bin + basis_of_value: measurement + replicates: '5' + methods: From Richards_2008_2 (unpublished); See original references, listed alphabetically + under 'additional references' +substitutions: .na +taxonomic_updates: .na +exclude_observations: .na +questions: + additional_traits: Birk_1992 - has all reported values for nutrient addition treatments + as well; Feller - has root nutrient values for 2 species; Hopmans_1993 - additional + micronutrient data for wood and bark; Leigh_2003 - gas exchange data in chart, + if we get hold of the author; Leigh_2006 - lots of additional data if we contact + author; Leuning_1991 - lots of gas exchanges, Jmax, Vcmax, detailed leaf N & P + data if we contact author diff --git a/tests/testthat/examples/Test_2023_6/output/contexts.csv b/tests/testthat/examples/Test_2023_6/output/contexts.csv new file mode 100644 index 00000000..873507fd --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/contexts.csv @@ -0,0 +1 @@ +dataset_id,context_property,category,value,description,link_id,link_vals diff --git a/tests/testthat/examples/Test_2023_6/output/contributors.csv b/tests/testthat/examples/Test_2023_6/output/contributors.csv new file mode 100644 index 00000000..3a2bc1a3 --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/contributors.csv @@ -0,0 +1,2 @@ +dataset_id,last_name,given_name,ORCID,affiliation,additional_role +Test_2023_6,Richards,Anna,0000-0002-2934-5497,"CSIRO Land and Water, Australia",contact diff --git a/tests/testthat/examples/Test_2023_6/output/definitions.yml b/tests/testthat/examples/Test_2023_6/output/definitions.yml new file mode 100644 index 00000000..780216c1 --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/definitions.yml @@ -0,0 +1,34 @@ +leaf_mass_per_area: + label: Leaf mass per area + description: A leaf morphology trait [TO:0000748] which is the ratio [PATO:0001470] + of the leaf dry [PATO:0001824] mass [PATO:0000125] to the leaf [PO:0025034] area + [PATO:0001323], measured on an entire leaf, including the entire leaf lamina [PO:0020039] + and the petiole [PO:0020038].;The ratio of leaf dry mass to leaf area, measured + on an entire leaf including the petiole; LMA. (The inverse of specific leaf area, + SLA.) + comments: Leaf mass per area includes measurements submitted as `specific_leaf_area` + (SLA); they are simply inverted. Leaf mass per area is explicitly measured on + an entire leaf, including the petiole. Measurements made on a piece of the leaf + lamina, excluding petiole and midrib, are a separate trait `leaf_lamina_mass_per_area`. + If measurements are made on the entire leaf lamina, but the petiole is excluded, + this should be noted in the methods or under `measurement_remarks`. + type: numeric + units: g/m2 + allowed_values_min: 1.0 + allowed_values_max: 3000.0 + entity_URI: https://w3id.org/APD/traits/trait_0011230 +leaf_lifespan: + label: Leaf lifespan + description: The duration [PATO:0001309] that an individual leaf [PO:0025034] is + attached to the stem [PO:0009047] and is physiologically functional [PATO:0001510].;Duration + of time that an individual leaf is attached to the stem and physiologically functional; + leaf longevity. + comments: Leaf lifespan is the inverse of the rate of leaf turnover. For some species, + leaflets or other portions of a leaf may be censused rather than the entire leaf + lamina. Leaf lifespan can be censused as either the rate of shedding leaves (leaf + death) or the rate of formation of new leaves (leaf birth). + type: numeric + units: mo + allowed_values_min: 1.0 + allowed_values_max: 1000.0 + entity_URI: https://w3id.org/APD/traits/trait_0030025 diff --git a/tests/testthat/examples/Test_2023_6/output/excluded_data.csv b/tests/testthat/examples/Test_2023_6/output/excluded_data.csv new file mode 100644 index 00000000..547d5fdc --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/excluded_data.csv @@ -0,0 +1 @@ +error,dataset_id,taxon_name,observation_id,trait_name,value,unit,entity_type,value_type,basis_of_value,replicates,basis_of_record,life_stage,population_id,individual_id,repeat_measurements_id,temporal_context_id,source_id,location_id,entity_context_id,plot_context_id,treatment_context_id,collection_date,measurement_remarks,method_id,method_context_id,original_name diff --git a/tests/testthat/examples/Test_2023_6/output/locations.csv b/tests/testthat/examples/Test_2023_6/output/locations.csv new file mode 100644 index 00000000..80789e4e --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/locations.csv @@ -0,0 +1,7 @@ +dataset_id,location_id,location_name,location_property,value +Test_2023_6,01,location_1,description,First made-up location for testing +Test_2023_6,01,location_1,latitude range (deg),-27.5 to -34.5 +Test_2023_6,01,location_1,longitude range (deg),114 to 122 +Test_2023_6,02,location_2,description,Second made-up location for testing +Test_2023_6,02,location_2,latitude range (deg),-11 to -26 +Test_2023_6,02,location_2,longitude range (deg),129 to 138 diff --git a/tests/testthat/examples/Test_2023_6/output/metadata.yml b/tests/testthat/examples/Test_2023_6/output/metadata.yml new file mode 100644 index 00000000..5dde7c3a --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/metadata.yml @@ -0,0 +1,86 @@ +title: 'AusTraits: a curated plant trait database for the Australian flora' +description: AusTraits is a transformative database, containing measurements on the + traits of Australia's plant taxa, standardised from hundreds of disconnected primary + sources. While this repository contains the harmonised data, the raw data and code + used to build the resource are also available on the project's GitHub repository,http://traitecoevo.github.io/traits.build. + Further information on the project is available in the associated publication and + at the project website https://austraits.org. +version: 5.0.0 +doi: 10.5281/zenodo.5112001 +structure_URI: https://github.com/traitecoevo/traits.build +geo_location: + geo_location_place: Australia + geodetic_datum: EPSG:4326 +language: en +related_identifiers: +- related_identifier_type: url + identifier: https://github.com/traitecoevo/traits.build/tree/v3.0.2 + relation_type: isCompiledBy + resource_type: dataset +- related_identifier_type: doi + identifier: 10.1038/s41597-021-01006-6 + relation_type: isCitedBy + resource_type: publication-article +references: 'Falster, Gallagher et al (2021) *AusTraits, a curated plant trait database + for the Australian flora*. Scientific Data 8: 254, https://doi.org/10.1038/s41597-021-01006-6' +publisher: Zenodo +publication_date: 27 Nov 2022 +license: + rights: CC-BY-4.0 + rights_holder: Falster, Daniel + rights_URI: https://creativecommons.org/licenses/by/4.0/ + description: Under this license, the material can be copied and redistributed in + any medium or format. It can be remixed, transformed, and built upon for any purpose, + even commercially. Re-users must give appropriate credit, provide a link to the + license, and indicate if changes were made. Re-users may not apply legal terms + or technological measures that legally restrict others from doing anything the + license permits. +subject: + subject_scheme: ANZSRC Field of Research + scheme_URI: https://linked.data.gov.au/def/anzsrc-for/2020/ + value_URI: + - https://linked.data.gov.au/def/anzsrc-for/2020/3103 + - https://linked.data.gov.au/def/anzsrc-for/2020/3104 + - https://linked.data.gov.au/def/anzsrc-for/2020/4104 + - https://linked.data.gov.au/def/anzsrc-for/2020/300703 + - https://linked.data.gov.au/def/anzsrc-for/2020/060705 + - https://linked.data.gov.au/def/anzsrc-for/2020/050202 + - https://linked.data.gov.au/def/anzsrc-for/2020/060208 + - https://linked.data.gov.au/def/anzsrc-for/2020/069902 +funding_reference: +- funder_name: Australian Research Data Commons (ARDC) + award_IRI: doi.org/10.47486/DP720 + award_number: DP720 + award_title: AusTraits, A national database on the traits of Australia's complete + flora. +- funder_name: Australian Research Data Commons (ARDC) + award_IRI: doi.org/10.47486/TD044 + award_number: TD044 + award_title: AusTraits, A national database on the traits of Australia's complete + flora. +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/DE170100208 + award_number: DE170100208 + award_title: Discovery Early Career Researcher Award +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/FT160100113 + award_number: FT160100113 + award_title: Future Fellowship +- funder_name: Australian Research Council + award_IRI: purl.org/au-research/grants/arc/FT100100910 + award_number: FT100100910 + award_title: Future Fellowship +creators: +- last_name: Falster + given_name: Daniel + ORCID: 0000-0002-9814-092X + affiliation: Evolution & Ecology Research Centre, UNSW Sydney, Australia +- last_name: Gallagher + given_name: Rachael + ORCID: 0000-0002-4680-8115 + affiliation: Hawkesbury Institute for the Environment, Western Sydney University, + Australia +- last_name: Elizabeth + given_name: Wenk + ORCID: 0000-0001-5640-5910 + affiliation: Evolution & Ecology Research Centre, UNSW Sydney, Australia diff --git a/tests/testthat/examples/Test_2023_6/output/methods.csv b/tests/testthat/examples/Test_2023_6/output/methods.csv new file mode 100644 index 00000000..877866c5 --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/methods.csv @@ -0,0 +1,3 @@ +dataset_id,trait_name,methods,method_id,description,sampling_strategy,source_primary_key,source_primary_citation,source_secondary_key,source_secondary_citation,source_original_dataset_key,source_original_dataset_citation,data_collectors,assistants,dataset_curators +Test_2023_6,leaf_mass_per_area,unknown,01,Collection of trait data on Australian plants compiled by Anna Richards and Ian Wright from papers,See the individual 'additional references' for the individual study motivations.,Richards_2008,"A. Richards and I. J. Wright. ""Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University"". 2009.",Leuning_1991; Meakins_0000,"R. Leuning, R. N. Cromer, and S. Rance. ""Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis"". _Oecologia_ 88.4 (1991), pp. 504-510. doi: [10.1007/bf00317712](https://doi.org/10.1007%2Fbf00317712); Meakins. ""Unpublished data: Study of Brindabella species"".",Bell_1985; Bevege_1978; Lambert_1979,"Bell. ""Nutrient requirements for the establishment of native flora at Weipa"". In: _Conference proceedings of N Australian mine rehab workshop 9_. 1985; D. I. Bevege. _Biomass and nutrient distribution in indigenous forest ecosystems_. Tech. rep. Queensland Department of Forestry, 1978, p. 20; M. J. Lambert. ""Sulphur relationships of native and exotic tree species"". Masters. Macquarie University, Sydney, 1979.",Anna Richards (contact),,Ian Wright +Test_2023_6,leaf_lifespan,"From Richards_2008_2 (unpublished); See original references, listed alphabetically under 'additional references'",01,Collection of trait data on Australian plants compiled by Anna Richards and Ian Wright from papers,See the individual 'additional references' for the individual study motivations.,Richards_2008,"A. Richards and I. J. Wright. ""Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University"". 2009.",Leuning_1991; Meakins_0000,"R. Leuning, R. N. Cromer, and S. Rance. ""Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis"". _Oecologia_ 88.4 (1991), pp. 504-510. doi: [10.1007/bf00317712](https://doi.org/10.1007%2Fbf00317712); Meakins. ""Unpublished data: Study of Brindabella species"".",Bell_1985; Bevege_1978; Lambert_1979,"Bell. ""Nutrient requirements for the establishment of native flora at Weipa"". In: _Conference proceedings of N Australian mine rehab workshop 9_. 1985; D. I. Bevege. _Biomass and nutrient distribution in indigenous forest ecosystems_. Tech. rep. Queensland Department of Forestry, 1978, p. 20; M. J. Lambert. ""Sulphur relationships of native and exotic tree species"". Masters. Macquarie University, Sydney, 1979.",Anna Richards (contact),,Ian Wright diff --git a/tests/testthat/examples/Test_2023_6/output/sources.bib b/tests/testthat/examples/Test_2023_6/output/sources.bib new file mode 100644 index 00000000..561a2f91 --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/sources.bib @@ -0,0 +1,46 @@ +@Unpublished{Richards_2008, + year = {2009}, + author = {Anna Richards and Ian J. Wright}, + title = {{Unpublished data: Transcription of Australian plant functional trait data from Ian Wright's collection of papers, Macquarie University}}, +} + +@Conference{Bell_1985, + year = {1985}, + author = {{Bell}}, + booktitle = {Conference proceedings of N Australian mine rehab workshop 9}, + title = {{Nutrient requirements for the establishment of native flora at Weipa}}, +} + +@TechReport{Bevege_1978, + year = {1978}, + author = {D. I. Bevege}, + institution = {Queensland Department of Forestry}, + title = {{Biomass and nutrient distribution in indigenous forest ecosystems}}, + volume = {6}, + pages = {20}, +} + +@Thesis{Lambert_1979, + year = {1979}, + author = {M. J. Lambert}, + title = {{Sulphur relationships of native and exotic tree species}}, + type = {Masters}, + institution = {Macquarie University, Sydney}, +} + +@Article{Leuning_1991, + year = {1991}, + author = {R. Leuning and R. N. Cromer and S. Rance}, + journal = {Oecologia}, + title = {{Spatial distributions of foliar nitrogen and phosphorus in crowns of Eucalyptus grandis}}, + volume = {88}, + number = {4}, + pages = {504--510}, + doi = {10.1007/bf00317712}, +} + +@Unpublished{Meakins_0000, + year = {unknown}, + author = {{Meakins}}, + title = {{Unpublished data: Study of Brindabella species}}, +} diff --git a/tests/testthat/examples/Test_2023_6/output/taxa.csv b/tests/testthat/examples/Test_2023_6/output/taxa.csv new file mode 100644 index 00000000..10c289ce --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/taxa.csv @@ -0,0 +1,31 @@ +original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means +Acacia aneura var. major,Acacia aneura var. major,,Acacia,Fabaceae,variety,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Acacia aneura var. major Pedley,https://id.biodiversity.org.au/node/apni/2888234,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/169532,Acacia aneura var. major,https://id.biodiversity.org.au/name/apni/230757,https://id.biodiversity.org.au/taxon/apni/51702961,Acacia aneura var. major,Acacia aneura,native +Acacia auriculiformis,Acacia auriculiformis,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), NT, Qld",Acacia auriculiformis A.Cunn. ex Benth.,https://id.biodiversity.org.au/node/apni/2900508,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/58974,Acacia auriculiformis,https://id.biodiversity.org.au/name/apni/58974,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia auriculiformis,native and naturalised +Acacia holosericea,Acacia holosericea,Acacia colei (pro parte misapplied) | Acacia colei (misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia holosericea A.Cunn. ex G.Don,https://id.biodiversity.org.au/node/apni/2908330,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/64393,Acacia holosericea [alternative possible names: Acacia colei (pro parte misapplied) | Acacia colei (misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia holosericea,native +Acacia kempeana,Acacia kempeana,Acacia sibirica (pro parte misapplied),Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, SA",Acacia kempeana F.Muell.,https://id.biodiversity.org.au/taxon/apni/51436560,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/65035,Acacia kempeana [alternative possible names: Acacia sibirica (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia kempeana,native +Acacia lysiphloia,Acacia lysiphloia,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Acacia lysiphloia F.Muell.,https://id.biodiversity.org.au/node/apni/2898828,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/66472,Acacia lysiphloia,https://id.biodiversity.org.au/name/apni/66472,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia lysiphloia,native +Acacia neurocarpa,Acacia neurocarpa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"WA, NT",Acacia neurocarpa A.Cunn. ex Hook.,https://id.biodiversity.org.au/taxon/apni/51286994,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/67333,Acacia neurocarpa,https://id.biodiversity.org.au/name/apni/67333,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia neurocarpa,native +Acacia shirleyi,Acacia shirleyi,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Acacia shirleyi Maiden,https://id.biodiversity.org.au/node/apni/2897282,https://id.biodiversity.org.au/taxon/apni/51471290,https://id.biodiversity.org.au/name/apni/70301,Acacia shirleyi,https://id.biodiversity.org.au/name/apni/70301,https://id.biodiversity.org.au/taxon/apni/51702961,,Acacia shirleyi,native +Archidendron kanisii,Archidendron kanisii,,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron kanisii R.S.Cowan,https://id.biodiversity.org.au/node/apni/2910703,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/154409,Archidendron kanisii,https://id.biodiversity.org.au/name/apni/154409,https://id.biodiversity.org.au/taxon/apni/51702961,,Archidendron kanisii,native +Archidendron whitei,Archidendron whitei,,Archidendron,Fabaceae,species,APC,accepted,Magnoliidae,Qld,Archidendron whitei I.C.Nielsen,https://id.biodiversity.org.au/node/apni/2895435,https://id.biodiversity.org.au/taxon/apni/51299843,https://id.biodiversity.org.au/name/apni/116851,Archidendron whitei,https://id.biodiversity.org.au/name/apni/116851,https://id.biodiversity.org.au/taxon/apni/51702961,,Archidendron whitei,native +Castanospermum australe,Castanospermum australe,,Castanospermum,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, NI (doubtfully naturalised)",Castanospermum australe A.Cunn. ex Mudie,https://id.biodiversity.org.au/node/apni/2894943,https://id.biodiversity.org.au/node/apni/7226268,https://id.biodiversity.org.au/name/apni/196675,Castanospermum australe,https://id.biodiversity.org.au/name/apni/196675,https://id.biodiversity.org.au/taxon/apni/51702961,,Castanospermum australe,native and naturalised +Corymbia dichromophloia,Corymbia dichromophloia,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Corymbia dichromophloia (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2902117,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119396,Corymbia dichromophloia,https://id.biodiversity.org.au/name/apni/119396,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia dichromophloia,native +Corymbia foelscheana,Corymbia foelscheana,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT",Corymbia foelscheana (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/2892950,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119404,Corymbia foelscheana,https://id.biodiversity.org.au/name/apni/119404,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia foelscheana,native +Corymbia terminalis,Corymbia terminalis,,Corymbia,Myrtaceae,species,APC,accepted,Magnoliidae,"NT, SA, Qld, NSW",Corymbia terminalis (F.Muell.) K.D.Hill & L.A.S.Johnson,https://id.biodiversity.org.au/node/apni/7549846,https://id.biodiversity.org.au/taxon/apni/51439690,https://id.biodiversity.org.au/name/apni/119435,Corymbia terminalis,https://id.biodiversity.org.au/name/apni/119435,https://id.biodiversity.org.au/taxon/apni/51738744,,Corymbia terminalis,native +Elaeocarpus angustifolius,Elaeocarpus angustifolius,Elaeocarpus grandis (pro parte misapplied),Elaeocarpus,Elaeocarpaceae,species,APC,accepted,Magnoliidae,NT,Elaeocarpus angustifolius Blume,https://id.biodiversity.org.au/node/apni/2909850,https://id.biodiversity.org.au/taxon/apni/51435153,https://id.biodiversity.org.au/name/apni/115318,Elaeocarpus angustifolius [alternative possible names: Elaeocarpus grandis (pro parte misapplied)],,https://id.biodiversity.org.au/taxon/apni/51632282,,Elaeocarpus angustifolius,native +Eucalyptus chlorophylla,Eucalyptus chlorophylla,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus chlorophylla Brooker & Done,https://id.biodiversity.org.au/node/apni/2893400,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/112391,Eucalyptus chlorophylla,https://id.biodiversity.org.au/name/apni/112391,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus chlorophylla,native +Eucalyptus grandis,Eucalyptus grandis,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA (naturalised), Qld, NSW",Eucalyptus grandis W.Hill,https://id.biodiversity.org.au/taxon/apni/51439812,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/75405,Eucalyptus grandis,https://id.biodiversity.org.au/name/apni/75405,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus grandis,native and naturalised +Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus miniata,native +Eucalyptus patellaris,Eucalyptus patellaris,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,NT,Eucalyptus patellaris F.Muell.,https://id.biodiversity.org.au/node/apni/2906207,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/87496,Eucalyptus patellaris,https://id.biodiversity.org.au/name/apni/87496,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus patellaris,native +Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus tetrodonta,native +Gardenia actinocarpa,Gardenia actinocarpa,,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia actinocarpa Puttock,https://id.biodiversity.org.au/taxon/apni/51293926,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/74954,Gardenia actinocarpa,https://id.biodiversity.org.au/name/apni/74954,https://id.biodiversity.org.au/taxon/apni/51446612,,Gardenia actinocarpa,native +Gardenia ovularis,Gardenia ovularis,,Gardenia,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Gardenia ovularis F.M.Bailey,https://id.biodiversity.org.au/node/apni/2895410,https://id.biodiversity.org.au/taxon/apni/51293927,https://id.biodiversity.org.au/name/apni/75259,Gardenia ovularis,https://id.biodiversity.org.au/name/apni/75259,https://id.biodiversity.org.au/taxon/apni/51446612,,Gardenia ovularis,native +Grevillea dimidiata,Grevillea dimidiata,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT",Grevillea dimidiata F.Muell.,https://id.biodiversity.org.au/node/apni/2901789,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/61434,Grevillea dimidiata,https://id.biodiversity.org.au/name/apni/61434,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea dimidiata,native +Grevillea pteridifolia,Grevillea pteridifolia,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Grevillea pteridifolia Knight,https://id.biodiversity.org.au/node/apni/2910744,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/111324,Grevillea pteridifolia,https://id.biodiversity.org.au/name/apni/111324,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea pteridifolia,native +Grevillea robusta,Grevillea robusta,,Grevillea,Proteaceae,species,APC,accepted,Magnoliidae,"Qld, NSW (native and naturalised), LHI (naturalised), NI (naturalised)",Grevillea robusta A.Cunn. ex R.Br.,https://id.biodiversity.org.au/node/apni/2918082,https://id.biodiversity.org.au/taxon/apni/51726302,https://id.biodiversity.org.au/name/apni/55137,Grevillea robusta,https://id.biodiversity.org.au/name/apni/55137,https://id.biodiversity.org.au/taxon/apni/51732901,,Grevillea robusta,native and naturalised +,Grevillea wickhamii ssp aprica,,,,,,,,,,,,,,,,,, +Hakea arborescens,Hakea arborescens,,Hakea,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Hakea arborescens R.Br.,https://id.biodiversity.org.au/node/apni/2897149,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/76681,Hakea arborescens,https://id.biodiversity.org.au/name/apni/76681,https://id.biodiversity.org.au/taxon/apni/51732901,,Hakea arborescens,native +Hakea suberea,Hakea lorea subsp. lorea,,Hakea,Proteaceae,subspecies,APC,accepted,Magnoliidae,"WA, NT, SA, Qld, NSW",Hakea lorea (R.Br.) R.Br. subsp. lorea,https://id.biodiversity.org.au/node/apni/2918427,https://id.biodiversity.org.au/taxon/apni/51445456,https://id.biodiversity.org.au/name/apni/162920,Hakea lorea subsp. lorea,https://id.biodiversity.org.au/name/apni/99787,https://id.biodiversity.org.au/taxon/apni/51732901,Hakea lorea subsp. lorea,Hakea lorea,native +Persoonia falcata,Persoonia falcata,,Persoonia,Proteaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Persoonia falcata R.Br.,https://id.biodiversity.org.au/node/apni/2904820,https://id.biodiversity.org.au/taxon/apni/51429033,https://id.biodiversity.org.au/name/apni/112478,Persoonia falcata,https://id.biodiversity.org.au/name/apni/112478,https://id.biodiversity.org.au/taxon/apni/51732901,,Persoonia falcata,native +Xanthostemon chrysanthus,Xanthostemon chrysanthus,,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon chrysanthus (F.Muell.) Benth.,https://id.biodiversity.org.au/node/apni/2920567,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/55063,Xanthostemon chrysanthus,https://id.biodiversity.org.au/name/apni/55063,https://id.biodiversity.org.au/taxon/apni/51738744,,Xanthostemon chrysanthus,native +Xanthostemon formosus,Xanthostemon formosus,,Xanthostemon,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Xanthostemon formosus Peter G.Wilson,https://id.biodiversity.org.au/taxon/apni/51440419,https://id.biodiversity.org.au/taxon/apni/51440420,https://id.biodiversity.org.au/name/apni/117195,Xanthostemon formosus,https://id.biodiversity.org.au/name/apni/117195,https://id.biodiversity.org.au/taxon/apni/51738744,,Xanthostemon formosus,native diff --git a/tests/testthat/examples/Test_2023_6/output/taxonomic_updates.csv b/tests/testthat/examples/Test_2023_6/output/taxonomic_updates.csv new file mode 100644 index 00000000..fb5d493a --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/taxonomic_updates.csv @@ -0,0 +1,31 @@ +dataset_id,original_name,aligned_name,taxonomic_resolution,taxon_name +Test_2023_6,Acacia aneura var. major,Acacia aneura var. major,,Acacia aneura var. major +Test_2023_6,Acacia auriculiformis,Acacia auriculiformis,,Acacia auriculiformis +Test_2023_6,Acacia holosericea,Acacia holosericea,,Acacia holosericea +Test_2023_6,Acacia kempeana,Acacia kempeana,,Acacia kempeana +Test_2023_6,Acacia lysiphloia,Acacia lysiphloia,,Acacia lysiphloia +Test_2023_6,Acacia neurocarpa,Acacia neurocarpa,,Acacia neurocarpa +Test_2023_6,Acacia shirleyi,Acacia shirleyi,,Acacia shirleyi +Test_2023_6,Archidendron kanisii,Archidendron kanisii,,Archidendron kanisii +Test_2023_6,Archidendron whitei,Archidendron whitei,,Archidendron whitei +Test_2023_6,Castanospermum australe,Castanospermum australe,,Castanospermum australe +Test_2023_6,Corymbia dichromophloia,Corymbia dichromophloia,,Corymbia dichromophloia +Test_2023_6,Corymbia foelscheana,Corymbia foelscheana,,Corymbia foelscheana +Test_2023_6,Corymbia terminalis,Corymbia terminalis,,Corymbia terminalis +Test_2023_6,Elaeocarpus angustifolius,Elaeocarpus angustifolius,,Elaeocarpus angustifolius +Test_2023_6,Eucalyptus chlorophylla,Eucalyptus chlorophylla,,Eucalyptus chlorophylla +Test_2023_6,Eucalyptus grandis,Eucalyptus grandis,,Eucalyptus grandis +Test_2023_6,Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus miniata +Test_2023_6,Eucalyptus patellaris,Eucalyptus patellaris,,Eucalyptus patellaris +Test_2023_6,Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus tetrodonta +Test_2023_6,Gardenia actinocarpa,Gardenia actinocarpa,,Gardenia actinocarpa +Test_2023_6,Gardenia ovularis,Gardenia ovularis,,Gardenia ovularis +Test_2023_6,Grevillea dimidiata,Grevillea dimidiata,,Grevillea dimidiata +Test_2023_6,Grevillea pteridifolia,Grevillea pteridifolia,,Grevillea pteridifolia +Test_2023_6,Grevillea robusta,Grevillea robusta,,Grevillea robusta +Test_2023_6,Grevillea wickhamii ssp aprica,Grevillea wickhamii ssp aprica,, +Test_2023_6,Hakea arborescens,Hakea arborescens,,Hakea arborescens +Test_2023_6,Hakea suberea,Hakea suberea,,Hakea lorea subsp. lorea +Test_2023_6,Persoonia falcata,Persoonia falcata,,Persoonia falcata +Test_2023_6,Xanthostemon chrysanthus,Xanthostemon chrysanthus,,Xanthostemon chrysanthus +Test_2023_6,Xanthostemon formosus,Xanthostemon formosus,,Xanthostemon formosus diff --git a/tests/testthat/examples/Test_2023_6/output/traits.csv b/tests/testthat/examples/Test_2023_6/output/traits.csv new file mode 100644 index 00000000..fbc9e401 --- /dev/null +++ b/tests/testthat/examples/Test_2023_6/output/traits.csv @@ -0,0 +1,37 @@ +dataset_id,taxon_name,observation_id,trait_name,value,unit,entity_type,value_type,basis_of_value,replicates,basis_of_record,life_stage,population_id,individual_id,repeat_measurements_id,temporal_context_id,source_id,location_id,entity_context_id,plot_context_id,treatment_context_id,collection_date,measurement_remarks,method_id,method_context_id,original_name +Test_2023_6,Acacia aneura var. major,01,leaf_mass_per_area,309.597523219814,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Acacia aneura var. major +Test_2023_6,Acacia auriculiformis,02,leaf_mass_per_area,74.6268656716418,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Acacia auriculiformis +Test_2023_6,Acacia holosericea,03,leaf_mass_per_area,94.876660341556,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Acacia holosericea +Test_2023_6,Acacia holosericea,04,leaf_mass_per_area,131.752305665349,g/m2,individual,mean,measurement,3,field,adult,01,02,,,Meakins_0000,01,,,,unknown/2009,,01,,Acacia holosericea +Test_2023_6,Acacia kempeana,05,leaf_mass_per_area,254.452926208651,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Acacia kempeana +Test_2023_6,Acacia lysiphloia,06,leaf_mass_per_area,121.654501216545,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Acacia lysiphloia +Test_2023_6,Acacia neurocarpa,07,leaf_mass_per_area,155.52099533437,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Acacia neurocarpa +Test_2023_6,Acacia shirleyi,08,leaf_mass_per_area,174.520069808028,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Acacia shirleyi +Test_2023_6,Archidendron kanisii,09,leaf_mass_per_area,55.2486187845304,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Archidendron kanisii +Test_2023_6,Archidendron whitei,10,leaf_lifespan,1.97260057797197--9.86300288985985,mo,individual,bin,measurement,5,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Archidendron whitei +Test_2023_6,Archidendron whitei,10,leaf_mass_per_area,43.4782608695652,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Archidendron whitei +Test_2023_6,Castanospermum australe,11,leaf_mass_per_area,81.2347684809098,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bell_1985,01,,,,unknown/2009,,01,,Castanospermum australe +Test_2023_6,Corymbia dichromophloia,12,leaf_mass_per_area,193.798449612403,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Corymbia dichromophloia +Test_2023_6,Corymbia foelscheana,13,leaf_mass_per_area,170.068027210884,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_6,Corymbia foelscheana,14,leaf_mass_per_area,161.290322580645,g/m2,individual,mean,measurement,3,field,adult,01,02,,,Meakins_0000,01,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_6,Corymbia foelscheana,15,leaf_mass_per_area,179.533213644524,g/m2,individual,mean,measurement,3,field,adult,01,03,,,Meakins_0000,01,,,,unknown/2009,,01,,Corymbia foelscheana +Test_2023_6,Corymbia terminalis,16,leaf_mass_per_area,276.243093922652,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Corymbia terminalis +Test_2023_6,Elaeocarpus angustifolius,17,leaf_mass_per_area,80.1282051282051,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bell_1985,01,,,,unknown/2009,,01,,Elaeocarpus angustifolius +Test_2023_6,Eucalyptus chlorophylla,18,leaf_mass_per_area,239.808153477218,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Eucalyptus chlorophylla +Test_2023_6,Eucalyptus grandis,19,leaf_mass_per_area,111.111111111111,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Leuning_1991,01,,,,unknown/2009,,01,,Eucalyptus grandis +Test_2023_6,Eucalyptus grandis,20,leaf_lifespan,5--15,mo,individual,bin,measurement,5,field,adult,02,01,,,Leuning_1991,02,,,,unknown/2009,,01,,Eucalyptus grandis +Test_2023_6,Eucalyptus miniata,21,leaf_mass_per_area,135.869565217391,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Eucalyptus miniata +Test_2023_6,Eucalyptus patellaris,22,leaf_mass_per_area,217.864923747277,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Eucalyptus patellaris +Test_2023_6,Eucalyptus tetrodonta,23,leaf_mass_per_area,176.991150442478,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Eucalyptus tetrodonta +Test_2023_6,Gardenia actinocarpa,24,leaf_mass_per_area,44.8430493273543,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Gardenia actinocarpa +Test_2023_6,Gardenia ovularis,25,leaf_mass_per_area,59.5238095238095,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Gardenia ovularis +Test_2023_6,Grevillea dimidiata,26,leaf_mass_per_area,193.050193050193,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Grevillea dimidiata +Test_2023_6,Grevillea pteridifolia,27,leaf_mass_per_area,196.078431372549,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Grevillea pteridifolia +Test_2023_6,Grevillea robusta,28,leaf_lifespan,4.99725479752899--11.9934115140696,mo,individual,bin,measurement,5,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Grevillea robusta +Test_2023_6,Grevillea robusta,28,leaf_mass_per_area,102.249488752556,g/m2,individual,mean,measurement,3,field,adult,pop_unk,01,,,Bell_1985,,,,,unknown/2009,,01,,Grevillea robusta +Test_2023_6,Grevillea wickhamii ssp aprica,29,leaf_mass_per_area,156.494522691706,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Grevillea wickhamii ssp aprica +Test_2023_6,Hakea arborescens,30,leaf_mass_per_area,357.142857142857,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Hakea arborescens +Test_2023_6,Hakea lorea subsp. lorea,31,leaf_mass_per_area,500,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Lambert_1979,01,,,,unknown/2009,,01,,Hakea suberea +Test_2023_6,Persoonia falcata,32,leaf_mass_per_area,145.985401459854,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Meakins_0000,01,,,,unknown/2009,,01,,Persoonia falcata +Test_2023_6,Xanthostemon chrysanthus,33,leaf_mass_per_area,76.9230769230769,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Xanthostemon chrysanthus +Test_2023_6,Xanthostemon formosus,34,leaf_mass_per_area,62.8930817610063,g/m2,individual,mean,measurement,3,field,adult,01,01,,,Bevege_1978,01,,,,unknown/2009,,01,,Xanthostemon formosus diff --git a/tests/testthat/examples/Test_2023_7/output/taxa.csv b/tests/testthat/examples/Test_2023_7/output/taxa.csv index 1eeab5bc..58eb53be 100644 --- a/tests/testthat/examples/Test_2023_7/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_7/output/taxa.csv @@ -1,3 +1,3 @@ original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means -Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus miniata,native -Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus tetrodonta,native +Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus miniata,native +Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus tetrodonta,native diff --git a/tests/testthat/examples/Test_2023_8/output/taxa.csv b/tests/testthat/examples/Test_2023_8/output/taxa.csv index 1eeab5bc..58eb53be 100644 --- a/tests/testthat/examples/Test_2023_8/output/taxa.csv +++ b/tests/testthat/examples/Test_2023_8/output/taxa.csv @@ -1,3 +1,3 @@ original_name,taxon_name,taxon_name_alternatives,genus,family,taxon_rank,taxonomic_dataset,taxonomic_status,subclass,taxon_distribution,scientific_name,taxon_id,taxon_ID_genus,scientific_name_id,canonical_name,cleaned_scientific_name_id,taxon_id_family,trinomial,binomial,establishment_means -Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus miniata,native -Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51702982,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51702983,,Eucalyptus tetrodonta,native +Eucalyptus miniata,Eucalyptus miniata,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus miniata A.Cunn. ex Schauer,https://id.biodiversity.org.au/node/apni/2889426,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/56460,Eucalyptus miniata,https://id.biodiversity.org.au/name/apni/56460,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus miniata,native +Eucalyptus tetrodonta,Eucalyptus tetrodonta,,Eucalyptus,Myrtaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Eucalyptus tetrodonta F.Muell.,https://id.biodiversity.org.au/node/apni/2905964,https://id.biodiversity.org.au/taxon/apni/51738743,https://id.biodiversity.org.au/name/apni/55572,Eucalyptus tetrodonta,https://id.biodiversity.org.au/name/apni/55572,https://id.biodiversity.org.au/taxon/apni/51738744,,Eucalyptus tetrodonta,native diff --git a/tests/testthat/test-setup.R b/tests/testthat/test-setup.R index 2b885c3a..8819d5b3 100644 --- a/tests/testthat/test-setup.R +++ b/tests/testthat/test-setup.R @@ -618,7 +618,7 @@ test_that("`build_setup_pipeline` is working", { expect_silent(taxa2 <- read_csv_char("config/taxon_list.csv")) expect_contains(names(taxa2), vars) expect_true(length(names(taxa2)) > 2) - expect_true(nrow(taxa2) == 232) + expect_true(nrow(taxa2) == 258) ## Now try building in a controlled env, using base method base_tmp_env <- new.env() diff --git a/tests/testthat/test-xamples.R b/tests/testthat/test-xamples.R index 5ea7332c..786fb85f 100644 --- a/tests/testthat/test-xamples.R +++ b/tests/testthat/test-xamples.R @@ -175,6 +175,75 @@ testthat::test_that("Test Dataset 4 builds correctly", { # If there are repeat measurements at the species level, the code works fine because `observation_id` # is the same across rows for a given species + +testthat::test_that("Test Dataset 5 builds correctly", { + + # Test Dataset 5: Test_2023_5 + # See README.md in examples/Test_2023_5 for details about this dataset + + # Build dataset + expect_no_error( + Test_2023_5 <- test_build_dataset( + file.path(examples_dir, "Test_2023_5/metadata.yml"), + file.path(examples_dir, "Test_2023_5/data.csv"), + "Test Dataset 5", definitions, unit_conversions, schema, resource_metadata, taxon_list + ), + info = "Building Test Dataset 5") + + # Expected output + tables <- c("traits", "locations", "contexts", "methods", "excluded_data", + "taxonomic_updates", "taxa", "contributors") + expect_no_error( + expected_output <- + purrr::map( + tables, ~read_csv(sprintf("examples/Test_2023_5/output/%s.csv", .x), col_types = cols(.default = "c"))), + info = "Reading in expected output tables" + ) + # Todo: also load and test non-csv outputs + names(expected_output) <- tables + + # Check all tables are equal to expected output tables + for (v in tables) { + expect_equal(Test_2023_5[[v]], expected_output[[v]]) + } + +}) + + +testthat::test_that("Test Dataset 6 builds correctly", { + + # Test Dataset 6: Test_2023_6 + # See README.md in examples/Test_2023_6 for details about this dataset + + # Build dataset + expect_no_error( + Test_2023_6 <- test_build_dataset( + file.path(examples_dir, "Test_2023_6/metadata.yml"), + file.path(examples_dir, "Test_2023_6/data.csv"), + "Test Dataset 6", definitions, unit_conversions, schema, resource_metadata, taxon_list + ), + info = "Building Test Dataset 6") + + # Expected output + tables <- c("traits", "locations", "contexts", "methods", "excluded_data", + "taxonomic_updates", "taxa", "contributors") + expect_no_error( + expected_output <- + purrr::map( + tables, ~read_csv(sprintf("examples/Test_2023_6/output/%s.csv", .x), col_types = cols(.default = "c"))), + info = "Reading in expected output tables" + ) + # Todo: also load and test non-csv outputs + names(expected_output) <- tables + + # Check all tables are equal to expected output tables + for (v in tables) { + expect_equal(Test_2023_6[[v]], expected_output[[v]]) + } + +}) + + testthat::test_that("Test Dataset 7 builds correctly", { # Test Dataset 7: Test_2023_7