From dfd5fc973b8a53edd5c29e8ee6ff3ee1f576dd2b Mon Sep 17 00:00:00 2001 From: Elizabeth Wenk Date: Thu, 19 Dec 2024 17:04:21 +1100 Subject: [PATCH 1/2] prepare for release update NEWS and DESCRIPTION files --- DESCRIPTION | 2 +- NEWS.md | 18 ++++++++++++++++++ 2 files changed, 19 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index f2858e17..cf9c8d50 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Type: Package Package: traits.build Title: A workflow for harmonising trait data from diverse sources into a documented standard structure -Version: 1.1.0.9000 +Version: 2.0.0 Maintainer: Daniel Falster Authors@R: c( person(given = "Daniel", family = "Falster", role = c("cre", "aut"), email = "daniel.falster@unsw.edu.au", comment = c(ORCID = "0000-0002-9814-092X")), diff --git a/NEWS.md b/NEWS.md index ed37a8ed..0e311445 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,21 @@ +# traits.build 2.0.0 + +- traits.build paper published in Sep 2024 +- Added standard error and standard deviation as value types +- Moved functions to austraits package and made austraits a dependancy +- Renamed some of the functions that are now moved to austraits package + * `bind_databases` <-- `build_combine` + * `convert_df_to_list` <-- `util_df_to_list` + * `convert_list_to_df1` <-- `util_list_to_df1` + * `convert_list_to_df2` <-- `util_list_to_df2` +- `plot_trait_distribution_beeswarm`, `trait_pivot_longer` and `trait_pivot_wider` had been in both austraits and traits.build packages and have now been removed from traits.build +- Renamed functions still *also* assigned their old name, with a deprecation warning indicating the new name +- Import new austraits function `flatten_database` (had been suggested to be `database_create_combined_table`) +- Refactoring of test functions used by `dataset_test` +- Added tests for the `dataset_test` (checking on Example datasets) +- Minor bug fixes +- Minor updates to ontology (now version 1.0) + # traits.build 1.1.0 - Small bugfixes in dataset_test From 3c3ac883f56abf0714cd273ca5e059a7452523d1 Mon Sep 17 00:00:00 2001 From: ehwenk Date: Fri, 20 Dec 2024 09:42:47 +1100 Subject: [PATCH 2/2] Update NEWS.md --- NEWS.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/NEWS.md b/NEWS.md index 0e311445..d47184c8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,18 +1,18 @@ # traits.build 2.0.0 -- traits.build paper published in Sep 2024 +- traits.build paper published in Sep 2024 in Ecological Informatics (DOI: [10.1016/j.ecoinf.2024.102773](https://doi.org/10.1016/j.ecoinf.2024.102773)) - Added standard error and standard deviation as value types -- Moved functions to austraits package and made austraits a dependancy +- Moved functions to austraits package and made austraits package a dependancy - Renamed some of the functions that are now moved to austraits package * `bind_databases` <-- `build_combine` * `convert_df_to_list` <-- `util_df_to_list` * `convert_list_to_df1` <-- `util_list_to_df1` * `convert_list_to_df2` <-- `util_list_to_df2` -- `plot_trait_distribution_beeswarm`, `trait_pivot_longer` and `trait_pivot_wider` had been in both austraits and traits.build packages and have now been removed from traits.build - Renamed functions still *also* assigned their old name, with a deprecation warning indicating the new name +- `plot_trait_distribution_beeswarm`, `trait_pivot_longer` and `trait_pivot_wider` had been in both austraits and traits.build packages and have now been removed from traits.build - Import new austraits function `flatten_database` (had been suggested to be `database_create_combined_table`) - Refactoring of test functions used by `dataset_test` -- Added tests for the `dataset_test` (checking on Example datasets) +- Added tests using the `dataset_test` function, so it is checked explicitly by traits.build (run on Example datasets) - Minor bug fixes - Minor updates to ontology (now version 1.0)