diff --git a/tripal_analysis_expression/includes/HeatMapGenerator.inc b/tripal_analysis_expression/includes/HeatMapGenerator.inc
index f7b24d44..ed0df305 100644
--- a/tripal_analysis_expression/includes/HeatMapGenerator.inc
+++ b/tripal_analysis_expression/includes/HeatMapGenerator.inc
@@ -1,6 +1,6 @@
featureNames = array_map('trim', explode(',', $_GET['heatmap_feature_uniquename']));
+ $this->featureNames = array_map('trim',
+ explode(',', $_GET['heatmap_feature_uniquename']));
}
/**
* Generate heat map data.
*
- * @throws \Exception
* @return object|bool
+ * @throws \Exception
*/
public function generate() {
if (count($this->featureNames) < 2) {
@@ -41,7 +42,8 @@ class HeatMapGenerator {
// Eager load biomaterial props
foreach ($expression->biomaterials as $analysis_id => $biomaterial) {
$this->biomaterialProps[$analysis_id] = [];
- $this->loadBiomaterialProps($expression->biomaterials[$analysis_id], $analysis_id);
+ $this->loadBiomaterialProps($expression->biomaterials[$analysis_id],
+ $analysis_id);
}
// Set URLs
@@ -49,13 +51,22 @@ class HeatMapGenerator {
// is not a big deal
foreach ($expression->features as $analysis_id => $features) {
foreach ($features as $feature_id => $feature) {
- $expression->features[$analysis_id][$feature_id] = l($feature, 'bio_data/' . chado_get_record_entity_by_table('feature', $feature_id));
+ $expression->features[$analysis_id][$feature_id] = l($feature,
+ 'bio_data/' . chado_get_record_entity_by_table('feature',
+ $feature_id));
}
}
foreach ($expression->biomaterials as $analysis_id => $biomaterials) {
foreach ($biomaterials as $biomaterial_id => $biomaterial) {
- $expression->biomaterials[$analysis_id][$biomaterial_id]['name'] = l($biomaterial['name'], 'bio_data/' . chado_get_record_entity_by_table('biomaterial', $biomaterial_id));
+ $name = $this->trim($biomaterial['name']);
+ $expression->biomaterials[$analysis_id][$biomaterial_id]['name'] = l($name,
+ 'bio_data/' . chado_get_record_entity_by_table('biomaterial',
+ $biomaterial_id), [
+ 'attributes' => [
+ 'title' => $biomaterial['name'],
+ ],
+ ]);
}
}
@@ -65,11 +76,25 @@ class HeatMapGenerator {
return $expression;
}
+ /**
+ * @param $str
+ * @param int $length
+ *
+ * @return string
+ */
+ public function trim($str, $length = 10) {
+ if (strlen($str) > $length) {
+ return substr($str, 0, $length) . '...';
+ }
+
+ return $str;
+ }
+
/**
* Get features from the DB.
*
- * @throws \Exception
* @return object
+ * @throws \Exception
*/
protected function getExpressionData() {
$sql = "SELECT ER.signal,
@@ -109,7 +134,8 @@ class HeatMapGenerator {
$biomaterials[$expression->analysis_id][$expression->biomaterial_id] = [
'name' => $expression->biomaterial_name,
'contact' => $expression->contact_name ?: 'Not Set',
- 'description' => wordwrap($expression->biomaterial_description, 75, '
'),
+ 'description' => wordwrap($expression->biomaterial_description, 75,
+ '
'),
'props' => [],
];
$features[$expression->analysis_id][$expression->feature_id] = $expression->feature_uniquename;
@@ -156,7 +182,8 @@ class HeatMapGenerator {
INNER JOIN {biomaterialprop} BP ON B.biomaterial_id = BP.biomaterial_id
INNER JOIN {cvterm} CVT ON BP.type_id = CVT.cvterm_id
WHERE B.biomaterial_id IN (:ids)";
- $props = chado_query($sql, [':ids' => array_keys($biomaterials)])->fetchAll();
+ $props = chado_query($sql,
+ [':ids' => array_keys($biomaterials)])->fetchAll();
foreach ($props as $prop) {
$biomaterials[$prop->biomaterial_id]['props'][$prop->name] = [