diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 67da52f8524..a445445cdc8 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -10,7 +10,7 @@ on:
 
 permissions:
   contents: write  # Grant write permissions for contents
-  checks: write    # Grant write permissions for checks
+  checks: write    # Grant write permissions for checks, only effective on push
   pull-requests: write  # Explicitly grant write permissions for pull requests
 
 jobs:
@@ -34,56 +34,57 @@ jobs:
       run: chmod +x scripts/run_commit_tests.sh
 
     - name: Run Shell Script to Generate Input File
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       run: |
         ./scripts/run_commit_tests.sh
 
     - name: Run JUnit Report Generation Script
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       run: |
         python scripts/into_junit.py /tmp/SHARED.UNITS > junit.xml
 
     - name: Convert JUnit XML to Standard HTML Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       run: |
         junit2html junit.xml junit-standard-report.html
 
     - name: Convert JUnit XML to Matrix HTML Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       run: |
         junit2html --report-matrix junit.xml junit-matrix-report.html
 
     - name: Upload JUnit XML Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/upload-artifact@v3
       with:
         name: junit-report
         path: junit.xml
 
     - name: Upload Standard HTML Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/upload-artifact@v3
       with:
         name: junit-standard-html-report
         path: junit-standard-report.html
 
     - name: Upload Matrix HTML Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/upload-artifact@v3
       with:
         name: junit-matrix-html-report
         path: junit-matrix-report.html
 
     - name: Display JUnit Test Results
+      if: github.event_name == 'push'  # Only run this step on pushes to main
       uses: dorny/test-reporter@v1
       with:
         name: 'JUnit Results'
         path: 'junit.xml'
         reporter: 'java-junit'
-        fail-on-error: false  # Do not fail the job if tests fail
+        fail-on-error: false
 
     - name: Download Previous JUnit Results
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/download-artifact@v3
       with:
         name: junit-report
@@ -98,7 +99,7 @@ jobs:
         reportgenerator           -reports:"previous-junit.xml;junit.xml"           -targetdir:"./comparison-report"           -reporttypes:"HtmlSummary;HtmlChart"
 
     - name: Upload JUnit Comparison Report
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/upload-artifact@v3
       with:
         name: junit-comparison-html-report
@@ -124,7 +125,7 @@ jobs:
         allure generate --clean --output ./allure-report ./allure-results
 
     - name: Upload Allure Report as Artifact
-      continue-on-error: true  # extra: Continue even if this step fails
+      continue-on-error: true
       uses: actions/upload-artifact@v3
       with:
         name: allure-html-report
diff --git a/hyperon-wam.vpj b/hyperon-wam.vpj
index 6f69f5b90ba..d4f4feaa7ca 100755
--- a/hyperon-wam.vpj
+++ b/hyperon-wam.vpj
@@ -107,6 +107,54 @@
 				Excludes=".git/;*.metta.html;*.bak;build/;.*/;*~*/"
 				L="1"/>
 		</Folder>
+		<Folder Name="reports">
+			<F N="reports/.gitignore"/>
+			<F N="reports/NewResults.md"/>
+			<F N="reports/PASS_FAIL.md"/>
+			<F N="reports/README.md"/>
+			<F N="reports/SHARED.UNITS.PREV.md"/>
+			<F N="reports/TEST_LINKS.md"/>
+		</Folder>
+		<Folder Name="scripts">
+			<F N="scripts/1-VSpaceTest.metta"/>
+			<F N="scripts/2-VSpaceTest.metta"/>
+			<F N="scripts/3-Learn-Rules.metta"/>
+			<F N="scripts/4-VSpaceTest.metta"/>
+			<F N="scripts/5-Learn-Flybase.metta"/>
+			<F N="scripts/6-Learn-Flybase-Full.metta"/>
+			<F N="scripts/7-FlybaseResults.metta"/>
+			<F N="scripts/8-FlybaseQuestions.metta"/>
+			<F N="scripts/add_lines.sh"/>
+			<F N="scripts/chado_to_tsv.sh"/>
+			<F N="scripts/colorize_output.sh"/>
+			<F N="scripts/convert_to_metta.sh"/>
+			<F N="scripts/ensure_venv"/>
+			<F N="scripts/envvars_mettalog.sh"/>
+			<F N="scripts/flybase_setup.sh"/>
+			<F N="scripts/html_pass_fail.sh"/>
+			<F N="scripts/into_junit.py"/>
+			<F N="scripts/metta-jupyter-kernel"/>
+			<F N="scripts/metta-jupyter-kernel-debug"/>
+			<F N="scripts/mettalog-docker"/>
+			<F N="scripts/mettalog-python"/>
+			<F N="scripts/mettalog.cmd"/>
+			<F N="scripts/old_test_in_metta2.sh"/>
+			<F N="scripts/open-metta-file.reg"/>
+			<F N="scripts/pass_fail_totals.sh"/>
+			<F N="scripts/rebuild-fast.sh"/>
+			<F N="scripts/Rebuild-hyperon.cmd"/>
+			<F N="scripts/rebuild-hyperon.sh"/>
+			<F N="scripts/rebuild-min.sh"/>
+			<F N="scripts/rebuild-nonminal.sh"/>
+			<F N="scripts/retest.sh"/>
+			<F N="scripts/run_commit_tests.sh"/>
+			<F N="scripts/send_keys_debug.sh"/>
+			<F N="scripts/start_jupyter.sh"/>
+			<F N="scripts/subtest.sh"/>
+			<F N="scripts/test_in_metta.sh"/>
+			<F N="scripts/test_in_metta1.sh"/>
+			<F N="scripts/total_loonits.sh"/>
+		</Folder>
 		<Folder Name="src">
 			<F
 				N="src/*.*"
diff --git a/scripts/into_junit.py b/scripts/into_junit.py
index b7d9e3a7ab7..b08a9334a18 100644
--- a/scripts/into_junit.py
+++ b/scripts/into_junit.py
@@ -7,17 +7,20 @@ def create_testcase_element(testclass, testname, stdout, identifier, got, expect
     # Create the testcase XML element with the class and test name attributes
     testcase = ET.Element("testcase", classname=testclass, name=testname)
 
+    test_res = f"Assertion: {stdout}\nExpected: {expected}\nActual: {got}"
+    sys_out_text = f"<![CDATA[\n<a href=\"{url}\">Test Report</a>\n\n{test_res}\n]]>"
+
     if status == "PASS":
         # If the test passed, add system-out with a clickable link and details
         system_out = ET.SubElement(testcase, "system-out")
-        system_out.text = f"<![CDATA[\n<a href=\"{url}\">Test Report</a>\n\nAssertion: {stdout}\nExpected: {expected}\nActual: {got}\n]]>"
+        system_out.text = sys_out_text        
     else:  # status == "FAIL"
         # If the test failed, add a failure element with details and a clickable link
         failure_message = f"Test failed: Expected '{expected}' but got '{got}'"
         failure = ET.SubElement(testcase, "failure", message=failure_message, type="AssertionError")
-        failure.text = f"<![CDATA[\nAssertionError: {failure_message}\n]]>"
+        failure.text = f"AssertionError: {failure_message}"
         system_out = ET.SubElement(testcase, "system-out")
-        system_out.text = f"<![CDATA[\n<a href=\"{url}\">Test Report</a>\n\nAssertion: {stdout}\nExpected: {expected}\nActual: {got}\n]]>"
+        system_out.text = sys_out_text
 
     return testcase