packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 0.24},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-cowplot,
  title = {cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2},
  author = {Claus O. Wilke},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://wilkelab.org/cowplot/},
}

@Manual{R-DiagrammeR,
  title = {DiagrammeR: Graph/Network Visualization},
  author = {Richard Iannone},
  year = {2022},
  note = {R package version 1.0.9},
  url = {https://github.com/rich-iannone/DiagrammeR},
}

@Manual{R-dotwhisker,
  title = {dotwhisker: Dot-and-Whisker Plots of Regression Results},
  author = {Frederick Solt and Yue Hu},
  year = {2021},
  note = {R package version 0.7.4},
  url = {https://CRAN.R-project.org/package=dotwhisker},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2022},
  note = {R package version 1.0.8},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2021},
  note = {R package version 3.3.5},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggpubr,
  title = {ggpubr: ggplot2 Based Publication Ready Plots},
  author = {Alboukadel Kassambara},
  year = {2020},
  note = {R package version 0.4.0},
  url = {https://rpkgs.datanovia.com/ggpubr/},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 1.37},
  url = {https://yihui.org/knitr/},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2022},
  note = {R package version 2.1.2},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.12},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham and Dana Seidel},
  year = {2022},
  note = {R package version 1.2.0},
  url = {https://CRAN.R-project.org/package=scales},
}

@Manual{R-sf,
  title = {sf: Simple Features for R},
  author = {Edzer Pebesma},
  year = {2022},
  note = {R package version 1.0-7},
  url = {https://CRAN.R-project.org/package=sf},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2021},
  note = {R package version 3.1.6},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Maximilian Girlich},
  year = {2022},
  note = {R package version 1.2.0},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2021},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-tufte,
  title = {tufte: Tufte's Styles for R Markdown Documents},
  author = {Yihui Xie and JJ Allaire},
  year = {2022},
  note = {R package version 0.12},
  url = {https://github.com/rstudio/tufte},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{sf2018,
  author = {Edzer Pebesma},
  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
  year = {2018},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2018-009},
  url = {https://doi.org/10.32614/RJ-2018-009},
  pages = {439--446},
  volume = {10},
  number = {1},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}

@Article{targets,
   title = {The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing},
   author = {William Michael Landau},
   journal = {Journal of Open Source Software},
   year = {2021},
   volume = {6},
   number = {57},
   pages = {2959},
   url = {https://doi.org/10.21105/joss.02959},
 }

 @Manual{tarchetypes,
   title = {tarchetypes: Archetypes for Targets},
   author = {William Michael Landau},
   year = {2021},
   note = {{https://docs.ropensci.org/tarchetypes/, https://github.com/ropensci/tarchetypes}},
 }

 @Manual{ggrepel,
  title = {ggrepel: Automatically Position Non-Overlapping Text Labels with
'ggplot2'},
  author = {Kamil Slowikowski},
  year = {2021},
  note = {R package version 0.9.1},
  url = {https://CRAN.R-project.org/package=ggrepel},
}

@Manual{data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2021},
  note = {R package version 1.14.2},
  url = {https://CRAN.R-project.org/package=data.table},
}

@Article{RJ-2021-048,
  author = {Henrik Bengtsson},
  title = {A Unifying Framework for Parallel and Distributed Processing in R using Futures},
  year = {2021},
  journal = {The R Journal},
  doi = {10.32614/RJ-2021-048},
  url = {https://doi.org/10.32614/RJ-2021-048},
  pages = {208--227},
  volume = {13},
  number = {2},
}

@Article{RJ-2021-048,
  author = {Henrik Bengtsson},
  title = {A Unifying Framework for Parallel and Distributed Processing in R using Futures},
  year = {2021},
  journal = {The R Journal},
  doi = {10.32614/RJ-2021-048},
  url = {https://doi.org/10.32614/RJ-2021-048},
  pages = {208--227},
  volume = {13},
  number = {2},
}

@Manual{furrr,
  title = {furrr: Apply Mapping Functions in Parallel using Futures},
  author = {Davis Vaughan and Matt Dancho},
  year = {2022},
  note = {R package version 0.3.1},
  url = {https://CRAN.R-project.org/package=furrr},
}

@Manual{kabelExtra,
  title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax},
  author = {Hao Zhu},
  year = {2021},
  note = {R package version 1.3.4},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{ggalluvial,
  title = {ggalluvial: Layered Grammar for Alluvial Plots.},
  author = {Jason Cory Brunson and Quentin D. Read},
  year = {2020},
  note = {R package version 0.12.3},
  url = {http://corybrunson.github.io/ggalluvial/},
}

@Manual{RColorBrewer,
  title = {RColorBrewer: ColorBrewer Palettes},
  author = {Erich Neuwirth},
  year = {2022},
  note = {R package version 1.1-3},
  url = {https://CRAN.R-project.org/package=RColorBrewer},
}