How to deal with changes of MLST scheme names in PubMLST?

[bioprojects]

I'm trying to update the local DB of PubMLST (~/miniconda2/envs/mlst/db/pubmlst)
and modified ~/miniconda2/envs/mlst/scripts/mlst-download_pub_mlst according to
#98 (comment)

However, in the downloaded files using the modified script, the following changes
of MLST scheme names appeared:
kpneumoniae -> klebsiella
senterica -> senterica_2
ypseudotuberculosis -> ypseudotuberculosis_3
In other words, kpneumoniae, senterica, ypseudotuberculosis don't exist in the downloaded files.
Therefore, just replacing ~/miniconda2/envs/mlst/db/pubmlst with the downloaded pubmlst directory
caused a runtime error.

Could you let me know the latest information about how to update the local DB of PubMLST?

Thank you very much in advance.

Koji Yahara
Group Leader
Antimicrobial Resistance Research Center
National Institute of Infectious Diseases
Aoba-cho 4-2-1, Higashimurayama-shi, Tokyo
189-0002 Japan