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get empty maf file #9

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DayTimeMouse opened this issue Oct 13, 2024 · 1 comment
Open

get empty maf file #9

DayTimeMouse opened this issue Oct 13, 2024 · 1 comment

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@DayTimeMouse
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Hi,

I run script:
java -jar snpEff.jar GRCh38.99 out.vcf -hgvs1LetterAa -canon > out.snpeff.vcf
perl snpeffToMaf.pl out.snpeff.vcf 100 0.05

But the output only have the header of maf file. The version SnpEff is 5.2.

Best regards.
@baishn1289
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I have the same problem. Have you already solved this problem?

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@DayTimeMouse @baishn1289