Running samples without normal/tumor pairings.

[raagagrawal]

I saw in the README that each patient needs a normal sample and a tumor pair. I am running the metapipeline on cell lines so I don't have any normal-tumor pairings. Is it possible to run the pipeline w/ only a single state e.g. all normal or all tumor like it is in the call-gsnp pipeline?

[tyamaguchi-ucla]

Yes, single sample mode (both normal or tumor only) is available. (v3.0.0-rc.1 and above)

[yashpatel6]

I'll also add, you can have a mix and run in single-sample mode. Ex. 20 normal samples and 30 tumor samples can all go into the same input CSV and be submitted together in single-sample mode; the appropriate pipelines will be run based on sample type for each individual sample.