diff --git a/pom.xml b/pom.xml
index cc23fd0..98d5e18 100644
--- a/pom.xml
+++ b/pom.xml
@@ -8,9 +8,9 @@
3.1.3
- no.uio.ifi
+ no.elixir.fega
localega-tsd-proxy
- 1.1.7
+ 2.0.0
localega-tsd-proxy
LocalEGA TSD Proxy
diff --git a/src/main/java/no/uio/ifi/ltp/LocalEGATSDProxyApplication.java b/src/main/java/no/elixir/fega/ltp/LocalEGATSDProxyApplication.java
similarity index 99%
rename from src/main/java/no/uio/ifi/ltp/LocalEGATSDProxyApplication.java
rename to src/main/java/no/elixir/fega/ltp/LocalEGATSDProxyApplication.java
index c9d39ad..c329162 100644
--- a/src/main/java/no/uio/ifi/ltp/LocalEGATSDProxyApplication.java
+++ b/src/main/java/no/elixir/fega/ltp/LocalEGATSDProxyApplication.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp;
+package no.elixir.fega.ltp;
import lombok.extern.slf4j.Slf4j;
import no.uio.ifi.tc.TSDFileAPIClient;
diff --git a/src/main/java/no/uio/ifi/ltp/aspects/AAIAspect.java b/src/main/java/no/elixir/fega/ltp/aspects/AAIAspect.java
similarity index 89%
rename from src/main/java/no/uio/ifi/ltp/aspects/AAIAspect.java
rename to src/main/java/no/elixir/fega/ltp/aspects/AAIAspect.java
index f0ddb57..62bdaa0 100644
--- a/src/main/java/no/uio/ifi/ltp/aspects/AAIAspect.java
+++ b/src/main/java/no/elixir/fega/ltp/aspects/AAIAspect.java
@@ -1,13 +1,13 @@
-package no.uio.ifi.ltp.aspects;
+package no.elixir.fega.ltp.aspects;
import com.auth0.jwt.JWT;
import com.auth0.jwt.interfaces.DecodedJWT;
import lombok.extern.slf4j.Slf4j;
+import no.elixir.fega.ltp.authentication.CEGACredentialsProvider;
import no.uio.ifi.clearinghouse.Clearinghouse;
import no.uio.ifi.clearinghouse.model.Visa;
import no.uio.ifi.clearinghouse.model.VisaType;
-import no.uio.ifi.ltp.authentication.CEGACredentialsProvider;
-import no.uio.ifi.ltp.dto.Credentials;
+import no.elixir.fega.ltp.dto.Credentials;
import org.apache.commons.codec.digest.Crypt;
import org.apache.commons.lang3.StringUtils;
import org.apache.http.auth.AuthenticationException;
@@ -34,9 +34,6 @@
import java.util.*;
import java.util.stream.Collectors;
-import static no.uio.ifi.ltp.aspects.ProcessArgumentsAspect.EGA_USERNAME;
-import static no.uio.ifi.ltp.aspects.ProcessArgumentsAspect.ELIXIR_ID;
-
/**
* AOP aspect that handles authentication and authorization.
*/
@@ -68,7 +65,7 @@ public class AAIAspect {
* @return Either the object, returned by the proxied method, or HTTP error response.
* @throws Throwable In case of error.
*/
- @Around("execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.*(..))")
+ @Around("execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.*(..))")
public Object authenticateElixirAAI(ProceedingJoinPoint joinPoint) throws Throwable {
Optional optionalBearerAuth = getBearerAuth();
if (optionalBearerAuth.isEmpty()) {
@@ -80,7 +77,7 @@ public Object authenticateElixirAAI(ProceedingJoinPoint joinPoint) throws Throwa
DecodedJWT decodedJWT = JWT.decode(jwtToken);
List controlledAccessGrantsVisas = getVisas(jwtToken, decodedJWT);
log.info("Elixir user {} authenticated and provided following valid GA4GH Visas: {}", decodedJWT.getSubject(), controlledAccessGrantsVisas);
- request.setAttribute(ELIXIR_ID, decodedJWT.getSubject());
+ request.setAttribute(ProcessArgumentsAspect.ELIXIR_ID, decodedJWT.getSubject());
return joinPoint.proceed();
} catch (Exception e) {
log.info(e.getMessage(), e);
@@ -95,8 +92,8 @@ public Object authenticateElixirAAI(ProceedingJoinPoint joinPoint) throws Throwa
* @return Either the object, returned by the proxied method, or HTTP error response.
* @throws Throwable In case of error.
*/
- @Around("execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.*(..)) && " +
- "!execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.stream(jakarta.servlet.http.HttpServletResponse, String, String))") // we don't need CEGA auth for Data Out endpoints
+ @Around("execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.*(..)) && " +
+ "!execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.stream(jakarta.servlet.http.HttpServletResponse, String, String))") // we don't need CEGA auth for Data Out endpoints
public Object authenticateCEGA(ProceedingJoinPoint joinPoint) throws Throwable {
if (((MethodSignature) joinPoint.getSignature()).getMethod().getName().equalsIgnoreCase("getFiles")) {
if (Boolean.FALSE.equals(joinPoint.getArgs()[1])) {
@@ -114,7 +111,7 @@ public Object authenticateCEGA(ProceedingJoinPoint joinPoint) throws Throwable {
throw new AuthenticationException("EGA authentication failed");
}
log.info("EGA user {} authenticated", usernameAndPassword[0]);
- request.setAttribute(EGA_USERNAME, usernameAndPassword[0]);
+ request.setAttribute(ProcessArgumentsAspect.EGA_USERNAME, usernameAndPassword[0]);
return joinPoint.proceed();
} catch (Exception e) {
log.info(e.getMessage(), e);
diff --git a/src/main/java/no/uio/ifi/ltp/aspects/CredentialsMappingAspect.java b/src/main/java/no/elixir/fega/ltp/aspects/CredentialsMappingAspect.java
similarity index 82%
rename from src/main/java/no/uio/ifi/ltp/aspects/CredentialsMappingAspect.java
rename to src/main/java/no/elixir/fega/ltp/aspects/CredentialsMappingAspect.java
index 09f5c1c..8b462ee 100644
--- a/src/main/java/no/uio/ifi/ltp/aspects/CredentialsMappingAspect.java
+++ b/src/main/java/no/elixir/fega/ltp/aspects/CredentialsMappingAspect.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.aspects;
+package no.elixir.fega.ltp.aspects;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.CollectionUtils;
@@ -12,8 +12,8 @@
import jakarta.servlet.http.HttpServletRequest;
import java.util.List;
-import static no.uio.ifi.ltp.aspects.ProcessArgumentsAspect.EGA_USERNAME;
-import static no.uio.ifi.ltp.aspects.ProcessArgumentsAspect.ELIXIR_ID;
+import static no.elixir.fega.ltp.aspects.ProcessArgumentsAspect.EGA_USERNAME;
+import static no.elixir.fega.ltp.aspects.ProcessArgumentsAspect.ELIXIR_ID;
/**
* AOP aspect that maps EGA username with Elixir ID.
@@ -35,7 +35,7 @@ public class CredentialsMappingAspect {
*
* @param result Object returned by the proxied method.
*/
- @AfterReturning(pointcut = "execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.stream(..))", returning = "result")
+ @AfterReturning(pointcut = "execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.stream(..))", returning = "result")
public void publishMessage(Object result) {
String egaUsername = request.getAttribute(EGA_USERNAME).toString();
String elixirId = request.getAttribute(ELIXIR_ID).toString();
diff --git a/src/main/java/no/uio/ifi/ltp/aspects/ProcessArgumentsAspect.java b/src/main/java/no/elixir/fega/ltp/aspects/ProcessArgumentsAspect.java
similarity index 93%
rename from src/main/java/no/uio/ifi/ltp/aspects/ProcessArgumentsAspect.java
rename to src/main/java/no/elixir/fega/ltp/aspects/ProcessArgumentsAspect.java
index 1186f8f..12b2f35 100644
--- a/src/main/java/no/uio/ifi/ltp/aspects/ProcessArgumentsAspect.java
+++ b/src/main/java/no/elixir/fega/ltp/aspects/ProcessArgumentsAspect.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.aspects;
+package no.elixir.fega.ltp.aspects;
import lombok.extern.slf4j.Slf4j;
import org.aspectj.lang.ProceedingJoinPoint;
@@ -42,7 +42,7 @@ public class ProcessArgumentsAspect {
* @throws Throwable In case of error.
*/
@SuppressWarnings("rawtypes")
- @Around("execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.stream(..)) || execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.deleteFile(..))")
+ @Around("execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.stream(..)) || execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.deleteFile(..))")
public Object processArguments(ProceedingJoinPoint joinPoint) throws Throwable {
try {
Object[] arguments = joinPoint.getArgs();
diff --git a/src/main/java/no/uio/ifi/ltp/aspects/PublishMQAspect.java b/src/main/java/no/elixir/fega/ltp/aspects/PublishMQAspect.java
similarity index 91%
rename from src/main/java/no/uio/ifi/ltp/aspects/PublishMQAspect.java
rename to src/main/java/no/elixir/fega/ltp/aspects/PublishMQAspect.java
index 51f8c25..056c112 100644
--- a/src/main/java/no/uio/ifi/ltp/aspects/PublishMQAspect.java
+++ b/src/main/java/no/elixir/fega/ltp/aspects/PublishMQAspect.java
@@ -1,10 +1,10 @@
-package no.uio.ifi.ltp.aspects;
+package no.elixir.fega.ltp.aspects;
import com.google.gson.Gson;
import lombok.extern.slf4j.Slf4j;
-import no.uio.ifi.ltp.dto.EncryptedIntegrity;
-import no.uio.ifi.ltp.dto.FileDescriptor;
-import no.uio.ifi.ltp.dto.Operation;
+import no.elixir.fega.ltp.dto.EncryptedIntegrity;
+import no.elixir.fega.ltp.dto.FileDescriptor;
+import no.elixir.fega.ltp.dto.Operation;
import no.uio.ifi.tc.model.pojo.TSDFileAPIResponse;
import org.apache.http.entity.ContentType;
import org.aspectj.lang.annotation.AfterReturning;
@@ -20,7 +20,7 @@
import java.util.Objects;
import java.util.UUID;
-import static no.uio.ifi.ltp.aspects.ProcessArgumentsAspect.*;
+import static no.elixir.fega.ltp.aspects.ProcessArgumentsAspect.*;
/**
* AOP aspect that publishes MQ messages.
@@ -58,7 +58,7 @@ public class PublishMQAspect {
* @param result Object returned by the proxied method.
*/
@SuppressWarnings({"unchecked", "rawtypes"})
- @AfterReturning(pointcut = "execution(@org.springframework.web.bind.annotation.PatchMapping public * no.uio.ifi.ltp.controllers.rest.ProxyController.stream(..))", returning = "result")
+ @AfterReturning(pointcut = "execution(@org.springframework.web.bind.annotation.PatchMapping public * no.elixir.fega.ltp.controllers.rest.ProxyController.stream(..))", returning = "result")
public void publishUpload(Object result) {
ResponseEntity genericResponseEntity = (ResponseEntity) result;
if (!String.valueOf(Objects.requireNonNull(genericResponseEntity).getStatusCode()).startsWith("20")) {
@@ -97,7 +97,7 @@ public void publishUpload(Object result) {
* @param result Object returned by the proxied method.
*/
@SuppressWarnings({"unchecked", "rawtypes"})
- @AfterReturning(pointcut = "execution(public * no.uio.ifi.ltp.controllers.rest.ProxyController.deleteFile(..))", returning = "result")
+ @AfterReturning(pointcut = "execution(public * no.elixir.fega.ltp.controllers.rest.ProxyController.deleteFile(..))", returning = "result")
public void publishRemove(Object result) {
ResponseEntity genericResponseEntity = (ResponseEntity) result;
if (!String.valueOf(Objects.requireNonNull(genericResponseEntity).getStatusCode()).startsWith("20")) {
diff --git a/src/main/java/no/uio/ifi/ltp/authentication/CEGACredentialsProvider.java b/src/main/java/no/elixir/fega/ltp/authentication/CEGACredentialsProvider.java
similarity index 95%
rename from src/main/java/no/uio/ifi/ltp/authentication/CEGACredentialsProvider.java
rename to src/main/java/no/elixir/fega/ltp/authentication/CEGACredentialsProvider.java
index cee7fa7..cab9dee 100644
--- a/src/main/java/no/uio/ifi/ltp/authentication/CEGACredentialsProvider.java
+++ b/src/main/java/no/elixir/fega/ltp/authentication/CEGACredentialsProvider.java
@@ -1,6 +1,6 @@
-package no.uio.ifi.ltp.authentication;
+package no.elixir.fega.ltp.authentication;
-import no.uio.ifi.ltp.dto.Credentials;
+import no.elixir.fega.ltp.dto.Credentials;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.cache.annotation.Cacheable;
diff --git a/src/main/java/no/uio/ifi/ltp/controllers/rest/AuthController.java b/src/main/java/no/elixir/fega/ltp/controllers/rest/AuthController.java
similarity index 97%
rename from src/main/java/no/uio/ifi/ltp/controllers/rest/AuthController.java
rename to src/main/java/no/elixir/fega/ltp/controllers/rest/AuthController.java
index 209965d..2b0d1d3 100644
--- a/src/main/java/no/uio/ifi/ltp/controllers/rest/AuthController.java
+++ b/src/main/java/no/elixir/fega/ltp/controllers/rest/AuthController.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.controllers.rest;
+package no.elixir.fega.ltp.controllers.rest;
import lombok.extern.slf4j.Slf4j;
import org.springframework.beans.factory.annotation.Autowired;
diff --git a/src/main/java/no/uio/ifi/ltp/controllers/rest/ProxyController.java b/src/main/java/no/elixir/fega/ltp/controllers/rest/ProxyController.java
similarity index 99%
rename from src/main/java/no/uio/ifi/ltp/controllers/rest/ProxyController.java
rename to src/main/java/no/elixir/fega/ltp/controllers/rest/ProxyController.java
index 98698e1..c71f9fa 100644
--- a/src/main/java/no/uio/ifi/ltp/controllers/rest/ProxyController.java
+++ b/src/main/java/no/elixir/fega/ltp/controllers/rest/ProxyController.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.controllers.rest;
+package no.elixir.fega.ltp.controllers.rest;
import lombok.extern.slf4j.Slf4j;
import no.uio.ifi.tc.TSDFileAPIClient;
diff --git a/src/main/java/no/uio/ifi/ltp/dto/Credentials.java b/src/main/java/no/elixir/fega/ltp/dto/Credentials.java
similarity index 91%
rename from src/main/java/no/uio/ifi/ltp/dto/Credentials.java
rename to src/main/java/no/elixir/fega/ltp/dto/Credentials.java
index 24234df..6ed02f5 100644
--- a/src/main/java/no/uio/ifi/ltp/dto/Credentials.java
+++ b/src/main/java/no/elixir/fega/ltp/dto/Credentials.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.dto;
+package no.elixir.fega.ltp.dto;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.Data;
diff --git a/src/main/java/no/uio/ifi/ltp/dto/EncryptedIntegrity.java b/src/main/java/no/elixir/fega/ltp/dto/EncryptedIntegrity.java
similarity index 91%
rename from src/main/java/no/uio/ifi/ltp/dto/EncryptedIntegrity.java
rename to src/main/java/no/elixir/fega/ltp/dto/EncryptedIntegrity.java
index cdb6f58..c7085f7 100644
--- a/src/main/java/no/uio/ifi/ltp/dto/EncryptedIntegrity.java
+++ b/src/main/java/no/elixir/fega/ltp/dto/EncryptedIntegrity.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.dto;
+package no.elixir.fega.ltp.dto;
import com.google.gson.annotations.SerializedName;
import lombok.Data;
diff --git a/src/main/java/no/uio/ifi/ltp/dto/FileDescriptor.java b/src/main/java/no/elixir/fega/ltp/dto/FileDescriptor.java
similarity index 95%
rename from src/main/java/no/uio/ifi/ltp/dto/FileDescriptor.java
rename to src/main/java/no/elixir/fega/ltp/dto/FileDescriptor.java
index 5372b43..b93872d 100644
--- a/src/main/java/no/uio/ifi/ltp/dto/FileDescriptor.java
+++ b/src/main/java/no/elixir/fega/ltp/dto/FileDescriptor.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.dto;
+package no.elixir.fega.ltp.dto;
import com.google.gson.annotations.SerializedName;
import lombok.Data;
diff --git a/src/main/java/no/uio/ifi/ltp/dto/Operation.java b/src/main/java/no/elixir/fega/ltp/dto/Operation.java
similarity index 78%
rename from src/main/java/no/uio/ifi/ltp/dto/Operation.java
rename to src/main/java/no/elixir/fega/ltp/dto/Operation.java
index baf79a7..70b8a74 100644
--- a/src/main/java/no/uio/ifi/ltp/dto/Operation.java
+++ b/src/main/java/no/elixir/fega/ltp/dto/Operation.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp.dto;
+package no.elixir.fega.ltp.dto;
/**
* Type of file event (created, moved, removed, etc.)
diff --git a/src/test/java/no/uio/ifi/ltp/LocalEGATSDProxyApplicationTests.java b/src/test/java/no/elixir/fega/ltp/LocalEGATSDProxyApplicationTests.java
similarity index 87%
rename from src/test/java/no/uio/ifi/ltp/LocalEGATSDProxyApplicationTests.java
rename to src/test/java/no/elixir/fega/ltp/LocalEGATSDProxyApplicationTests.java
index e7f5a61..cfc8258 100644
--- a/src/test/java/no/uio/ifi/ltp/LocalEGATSDProxyApplicationTests.java
+++ b/src/test/java/no/elixir/fega/ltp/LocalEGATSDProxyApplicationTests.java
@@ -1,4 +1,4 @@
-package no.uio.ifi.ltp;
+package no.elixir.fega.ltp;
import org.junit.jupiter.api.Test;
import org.springframework.boot.test.context.SpringBootTest;