From 45ebb0d3b2cb11f4621de364c3df6361c7baf219 Mon Sep 17 00:00:00 2001
From: Sehrish Kanwal <kanwals@unimelb.edu.au>
Date: Mon, 15 Jul 2024 14:39:19 +1000
Subject: [PATCH] Update README.md

---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 922e9de0..115acccf 100755
--- a/README.md
+++ b/README.md
@@ -371,7 +371,7 @@ dataset is used as reference cohort (`--dataset TEST`).
 rnasum.R \
   --sample_name test_sample_WTS \
   --dataset TEST \
-  --dragen_rnaseq inst/rawdata/test_data/dragen \
+  --dragen_wts_dir inst/rawdata/test_data/dragen \
   --report_dir inst/rawdata/test_data/dragen/RNAsum \
   --umccrise inst/rawdata/test_data/umccrised/test_sample_WGS \
   --save_tables FALSE
@@ -396,7 +396,7 @@ pancreatic adenocarcinoma dataset is used as the reference cohort
 rnasum.R \
   --sample_name test_sample_WTS \
   --dataset TEST \
-  --dragen_rnaseq inst/rawdata/test_data/dragen \
+  --dragen_wts_dir inst/rawdata/test_data/dragen \
   --report_dir inst/rawdata/test_data/dragen/RNAsum \
   --save_tables FALSE
 ```
@@ -422,7 +422,7 @@ dataset is used as the reference cohort (`--dataset TEST`).
 rnasum.R \
   --sample_name test_sample_WTS \
   --dataset TEST \
-  --dragen_rnaseq $(pwd)/../rawdata/test_data/dragen \
+  --dragen_wts_dir $(pwd)/../rawdata/test_data/dragen \
   --report_dir $(pwd)/../rawdata/test_data/dragen/RNAsum \
   --umccrise $(pwd)/../rawdata/test_data/umccrised/test_sample_WGS \
   --save_tables FALSE \