From 342fedcf6a46487ef6ee34a05df371467881a9b7 Mon Sep 17 00:00:00 2001 From: alexiswl <8197659+alexiswl@users.noreply.github.com> Date: Sat, 24 Feb 2024 09:39:21 +1100 Subject: [PATCH 1/2] Update runinfo xml regex Renamed runinfo RunInfo.ctTSO_ctDNA.xml for this run --- utils/globals.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/utils/globals.py b/utils/globals.py index a030850..74b671e 100644 --- a/utils/globals.py +++ b/utils/globals.py @@ -106,7 +106,7 @@ ######################### # RunInfo.xml ######################### -RUN_INFO_XML_REGEX = re.compile(r"gds://(?:bssh\.\S+|production/raw_data)/Runs/([\w+|_]+)_r\.\S+/RunInfo\.xml") +RUN_INFO_XML_REGEX = re.compile(r"gds://(?:bssh\.\S+|production/raw_data)/Runs/([\w+|_]+)_r\.\S+/RunInfo(?:.*)?\.xml") ################# # OUTPUT GLOBALS From 6322165dfa1d2b36abefd879c603b98014896217 Mon Sep 17 00:00:00 2001 From: Alexis Lucattini Date: Sat, 24 Feb 2024 09:41:46 +1100 Subject: [PATCH 2/2] Update changelog --- Changelog.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/Changelog.md b/Changelog.md index ceabb92..633fb57 100644 --- a/Changelog.md +++ b/Changelog.md @@ -4,6 +4,16 @@ Changes in this log refer only to changes that make it to the 'main' branch. and For changes in deployment, please see the [deployment changelog](deploy/cttso-ica-to-pieriandx-cdk/Changelog.md) +## 2024-02-24 + +> Author: Alexis Lucattini +> Email: [Alexis.Lucattini@umccr.org](mailto:alexis.lucattini@umccr.org) + +### Hotfixes +* Fix Run info xml regex, run info may also be named RunInfo.abc.xml (https://github.com/umccr/cttso-ica-to-pieriandx/pull/211) + * Resolves https://github.com/umccr/cttso-ica-to-pieriandx/issues/210 + + ## 2023-11-27 > Author: Alexis Lucattini