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Study ID / Participant ID not submitted for deidentified sample #184

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alexiswl opened this issue Nov 22, 2023 · 0 comments · Fixed by #187 or #189
Closed

Study ID / Participant ID not submitted for deidentified sample #184

alexiswl opened this issue Nov 22, 2023 · 0 comments · Fixed by #187 or #189

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@alexiswl
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2023-11-22 03:27:09,717 - ERROR    - accession                 - sanitise_data_frame                      : LineNo. 496  - Missing inputs in the following mandatory columns: study_id, participant_id
--
Traceback (most recent call last):
File "/home/cttso_ica_to_pieriandx_user/cttso-ica-to-pieriandx-src/scripts/cttso-ica-to-pieriandx.py", line 144, in <module>
main()
File "/home/cttso_ica_to_pieriandx_user/cttso-ica-to-pieriandx-src/scripts/cttso-ica-to-pieriandx.py", line 41, in main
args = check_ica_to_pieriandx_args(args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/cttso_ica_to_pieriandx_user/.conda/envs/cttso-ica-to-pieriandx/lib/python3.11/site-packages/cttso_ica_to_pieriandx-1.0-py3.11.egg/utils/args.py", line 195, in check_ica_to_pieriandx_args
input_df = sanitise_data_frame(input_df)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/cttso_ica_to_pieriandx_user/.conda/envs/cttso-ica-to-pieriandx/lib/python3.11/site-packages/cttso_ica_to_pieriandx-1.0-py3.11.egg/utils/accession.py", line 497, in sanitise_data_frame
raise ValueError
ValueError

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