remove default for qc_somatic_contam_vcf

umccr · Feb 13, 2025 · 6e2c117 · 6e2c117
1 parent c69de70
commit 6e2c117
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diff --git a/tools/dragen-somatic/4.2.4/dragen-somatic__4.2.4.cwl b/tools/dragen-somatic/4.2.4/dragen-somatic__4.2.4.cwl
@@ -1489,7 +1489,6 @@ inputs:
       Pre-built contamination VCF files for different human references can be found at /opt/edico/config. 
       DRAGEN supports separate modes for germline and somatic samples. 
     type: File?
-    default: "/opt/edico/config/somatic_sample_cross_contamination_resource_hg38.vcf.gz"
     inputBinding:
       prefix: "--qc-somatic-contam-vcf="
       separate: False

diff --git a/tools/dragen-somatic/4.3.6/dragen-somatic__4.3.6.cwl b/tools/dragen-somatic/4.3.6/dragen-somatic__4.3.6.cwl
@@ -1471,7 +1471,6 @@ inputs:
       Pre-built contamination VCF files for different human references can be found at /opt/edico/config. 
       DRAGEN supports separate modes for germline and somatic samples. 
     type: File?
-    default: "/opt/edico/config/somatic_sample_cross_contamination_resource_hg38.vcf.gz"
     inputBinding:
       prefix: "--qc-somatic-contam-vcf="
       separate: False