From 74d69a13a7514138be5577b79a82ce9d4cfb137e Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 10 Dec 2024 23:19:12 +0000 Subject: [PATCH] Updated config/icav2.yaml to include new bundles --- config/icav2.yaml | 188 +++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 187 insertions(+), 1 deletion(-) diff --git a/config/icav2.yaml b/config/icav2.yaml index e246a6c9..dc1caeda 100644 --- a/config/icav2.yaml +++ b/config/icav2.yaml @@ -2298,7 +2298,7 @@ bunches: - bunch_name: dragen_reference_tarball_generation bunch_description: Workflow for generating the reference tarball tenant_name: umccr-prod - pipeline_path: + pipeline_path: workflows/dragen-build-reference-tarball-pipeline/4.2.4/dragen-build-reference-tarball-pipeline__4.2.4.cwl pipeline_project_name: pipelines bunch_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb @@ -6610,3 +6610,189 @@ bundles: - development - staging - production + - bundle_name: dragen_transcriptome_pipeline_with_validation_data__4_2_4__20241210230924 + bundle_description: 'This bundle has been generated by the release of workflows/dragen-transcriptome-pipeline/4.2.4/dragen-transcriptome-pipeline__4.2.4.cwl. + The pipeline can be found at https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.2.4__20241210230924. ' + bundle_version: v9_r3__20241210230924 + bundle_version_description: Bundle version description is currently redundant + while we cannot append versions to bundles. Regardless - the bunch version is + v9_r3 + bundle_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb + bundle_region_city_name: Sydney + tenant_name: umccr-prod + pipeline_path: + workflows/dragen-transcriptome-pipeline/4.2.4/dragen-transcriptome-pipeline__4.2.4.cwl + pipeline_name: dragen-transcriptome-pipeline + pipeline_version: 4.2.4 + pipeline_release_url: + https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.2.4__20241210230924 + pipeline_commit_id: dragen-transcriptome-pipeline/4.2.4__20241210230924 + pipeline_checksum: c66d8f1e95b11ae4c170c572607b8c15 + pipeline_project_id: 5844391a-69db-4b52-86b5-6a0d55c2386f + bundle_creation_time: '2024-12-10T23:12:04Z' + bundle_release_status: draft + bunch_name: dragen_transcriptome_pipeline_with_validation_data__4_2_4 + bunch_version: v9_r3 + bunch_datasets: + - dataset_name: dragen_hash_table_hg38_alt_masked_v9_r3_linear_cnv_hla_rna + dataset_creation_time: '2024-06-21T09:21:42Z' + dataset_id_hash: a5fe1d2e2fe35737bdbc0871d46878e1 + - dataset_name: hg38_fasta + dataset_creation_time: '2024-06-21T11:31:50Z' + dataset_id_hash: 5f129b14aca5b4a7fda902590b15abc2 + - dataset_name: arriba_2_4_0 + dataset_creation_time: '2024-06-21T11:31:26Z' + dataset_id_hash: 8695cf0a98c5cda5726f67d4922da67f + - dataset_name: hg38_v39_gencode_annotation + dataset_creation_time: '2024-07-08T01:23:37Z' + dataset_id_hash: 7e88d10c15bfc88ee2e9527962c63984 + - dataset_name: wts_validation_fastq__SBJ00480 + dataset_creation_time: '2024-06-21T09:41:15Z' + dataset_id_hash: c8b8bdc7e384aaa470b12992ce196693 + - dataset_name: wts_validation_fastq__SBJ00028 + dataset_creation_time: '2024-06-21T09:42:31Z' + dataset_id_hash: fa76e6ca3a0fb0be2bf41840a7aeeb01 + - dataset_name: wts_validation_fastq__SBJ00061 + dataset_creation_time: '2024-06-21T09:42:54Z' + dataset_id_hash: 63ee438354c347b05218b9bddc53d936 + - dataset_name: wts_validation_fastq__SBJ00188 + dataset_creation_time: '2024-06-21T09:43:11Z' + dataset_id_hash: 401d12d90e00db19918e5c9ce13a3da0 + - dataset_name: wts_validation_fastq__SBJ00199 + dataset_creation_time: '2024-06-21T09:49:27Z' + dataset_id_hash: b95ac04c7e3c03a8b1868a4571d23d5f + - dataset_name: wts_validation_fastq__SBJ00236 + dataset_creation_time: '2024-06-21T09:49:54Z' + dataset_id_hash: f084081c52ddda14328294d7bb7f13f4 + - dataset_name: wts_validation_fastq__SBJ00238 + dataset_creation_time: '2024-06-21T09:50:29Z' + dataset_id_hash: ba04ff08acbfbd1c17f1aadc0e8b3cf5 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_1_Good__SBJ01563 + dataset_creation_time: '2024-06-21T11:33:06Z' + dataset_id_hash: 8de637be95f6ded72f61103bc842da45 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_2_Good__SBJ01147 + dataset_creation_time: '2024-06-21T11:34:05Z' + dataset_id_hash: e11d32cd8efced32065a52eea33b06d1 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_3_Good__SBJ01620 + dataset_creation_time: '2024-06-21T11:34:29Z' + dataset_id_hash: 0f0fee1a6b1f7b46978643839ffc0e88 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_4_Bad__SBJ01286 + dataset_creation_time: '2024-06-21T11:34:51Z' + dataset_id_hash: 3d9dae1be84d29848f24df81d1ab4219 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_5_Bad__SBJ01673 + dataset_creation_time: '2024-06-21T11:35:25Z' + dataset_id_hash: 42a9396b3f5d7e919e30a0f59f2401b7 + bundle_id: 55384505-279d-496b-80c8-8c24fd0e06e3 + bundle_data_ids: + - fil.2082d35d90fb4b9e126a08dc7a0472f4 + - fil.33b0c303aa2a44efda7008dc8578d1bb + - fil.8ab696eccee945064fe608dc9159afed + - fil.8950646b2bcf4137dac908dc8578d1bb + - fil.361af4dcff7840b5dab808dc8578d1bb + - fil.e956bc1d6e124433503f08dc9159afed + - fil.962f7248f6bb4d4b9b1f08dc9833b59f + - fil.00db7f575e3c4741766608dc8682e79a + - fil.848678f252004cae726508dc8578d1b7 + - fil.e47895b2674b40cf727508dc8578d1b7 + - fil.f7b97fcf876b4409727608dc8578d1b7 + - fil.ad6640db600e44e1727a08dc8578d1b7 + - fil.6e3e68b7fc8b48ef76a908dc8682e79a + - fil.25ae81b4f33146b2769708dc8682e79a + - fil.dc806da29f02402076aa08dc8682e79a + - fil.8ed5724bce234ff276ad08dc8682e79a + - fil.2c3073bee29c47ea76ae08dc8682e79a + - fil.a191c268b58b414972ae08dc8578d1b7 + - fil.f4d61a69d418416a76af08dc8682e79a + - 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' + bundle_version: v9_r3__20241210230924 + bundle_version_description: Bundle version description is currently redundant + while we cannot append versions to bundles. Regardless - the bunch version is + v9_r3 + bundle_region_id: 1efd315d-6309-4d7e-826b-d3824b0b5acb + bundle_region_city_name: Sydney + tenant_name: umccr-prod + pipeline_path: + workflows/dragen-transcriptome-pipeline/4.2.4/dragen-transcriptome-pipeline__4.2.4.cwl + pipeline_name: dragen-transcriptome-pipeline + pipeline_version: 4.2.4 + pipeline_release_url: + https://github.com/umccr/cwl-ica/releases/tag/dragen-transcriptome-pipeline/4.2.4__20241210230924 + pipeline_commit_id: dragen-transcriptome-pipeline/4.2.4__20241210230924 + pipeline_checksum: c66d8f1e95b11ae4c170c572607b8c15 + pipeline_project_id: 5844391a-69db-4b52-86b5-6a0d55c2386f + bundle_creation_time: '2024-12-10T23:16:49Z' + bundle_release_status: draft + bunch_name: dragen_transcriptome_pipeline_prod__4_2_4 + bunch_version: v9_r3 + bunch_datasets: + - dataset_name: dragen_hash_table_hg38_alt_masked_v9_r3_linear_cnv_hla_rna + dataset_creation_time: '2024-06-21T09:21:42Z' + dataset_id_hash: a5fe1d2e2fe35737bdbc0871d46878e1 + - dataset_name: hg38_fasta + dataset_creation_time: '2024-06-21T11:31:50Z' + dataset_id_hash: 5f129b14aca5b4a7fda902590b15abc2 + - dataset_name: arriba_2_4_0 + dataset_creation_time: '2024-06-21T11:31:26Z' + dataset_id_hash: 8695cf0a98c5cda5726f67d4922da67f + - dataset_name: hg38_v39_gencode_annotation + dataset_creation_time: '2024-07-08T01:23:37Z' + dataset_id_hash: 7e88d10c15bfc88ee2e9527962c63984 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_1_Good__SBJ01563 + dataset_creation_time: '2024-06-21T11:33:06Z' + dataset_id_hash: 8de637be95f6ded72f61103bc842da45 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_2_Good__SBJ01147 + dataset_creation_time: '2024-06-21T11:34:05Z' + dataset_id_hash: e11d32cd8efced32065a52eea33b06d1 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_3_Good__SBJ01620 + dataset_creation_time: '2024-06-21T11:34:29Z' + dataset_id_hash: 0f0fee1a6b1f7b46978643839ffc0e88 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_4_Bad__SBJ01286 + dataset_creation_time: '2024-06-21T11:34:51Z' + dataset_id_hash: 3d9dae1be84d29848f24df81d1ab4219 + - dataset_name: wts_multiqc__2023_07_21__4_2_4__Ref_5_Bad__SBJ01673 + dataset_creation_time: '2024-06-21T11:35:25Z' + dataset_id_hash: 42a9396b3f5d7e919e30a0f59f2401b7 + bundle_id: 24f3ae95-6a38-4864-89e0-5d71174089c1 + bundle_data_ids: + - fil.2082d35d90fb4b9e126a08dc7a0472f4 + - fil.33b0c303aa2a44efda7008dc8578d1bb + - fil.8ab696eccee945064fe608dc9159afed + - fil.8950646b2bcf4137dac908dc8578d1bb + - fil.361af4dcff7840b5dab808dc8578d1bb + - fil.e956bc1d6e124433503f08dc9159afed + - fil.962f7248f6bb4d4b9b1f08dc9833b59f + - fol.4bfb05e08c2c46e7927908dc8578d1b7 + - fol.a3f65803908c4f29969508dc8682e79a + - fol.841783fe78e64b7e96cd08dc8682e79a + - fol.0dcfcd90b98d4b58925408dc8578d1b7 + - fol.7ff6b53c0f0148b7970c08dc8682e79a + bundle_pipeline_id: 73e21ce0-60d7-4e3e-b130-88aff78d500d + bundle_url: + https://ica.illumina.com/ica/bundles/24f3ae95-6a38-4864-89e0-5d71174089c1/bundleDetails + bundle_categories: + - wts + - somatic + - production + - secondary-analysis + projects: + - production