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dragen: remove per-file R6 classes (R/)
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@pdiakumis
pdiakumis committed Oct 17, 2024
1 parent 1d68fd1 commit 91d3016
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Showing 4 changed files with 104 additions and 1,108 deletions.
13 changes: 0 additions & 13 deletions NAMESPACE
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Original file line number Diff line number Diff line change
Expand Up @@ -4,19 +4,11 @@ S3method(read,File)
export(BcftoolsStatsFile)
export(BclconvertReports)
export(BclconvertReports375)
export(FastqcMetricsFile)
export(File)
export(FragmentLengthHistFile)
export(MappingMetricsFile)
export(MultiqcFile)
export(PcgrJsonFile)
export(PcgrTiersFile)
export(PloidyEstimationMetricsFile)
export(ReplayFile)
export(SvMetricsFile)
export(TimeMetricsFile)
export(TrimmerMetricsFile)
export(VCMetricsFile)
export(Wf)
export(Wf_dragen)
export(Wf_sash)
Expand All @@ -25,10 +17,6 @@ export(Wf_tso_ctdna_tumor_only)
export(Wf_tso_ctdna_tumor_only_v2)
export(Wf_umccrise)
export(Wf_umccrise_download_tidy_write)
export(WgsContigMeanCovFile)
export(WgsCoverageMetricsFile)
export(WgsFineHistFile)
export(WgsHistFile)
export(bcftools_parse_vcf)
export(bcftools_parse_vcf_regions)
export(date_log)
Expand Down Expand Up @@ -79,7 +67,6 @@ export(s3_list_files_filter_relevant)
export(s3_search)
export(session_info_kable)
export(tidy_files)
export(time_metrics_process)
export(tso_acfc_plot)
export(tso_acfc_read)
export(tso_combinedvaro_smallv_read)
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