From fa3c2aaedd5b45909c09412b1b963d6ffa660040 Mon Sep 17 00:00:00 2001 From: Peter Diakumis Date: Fri, 6 Dec 2024 18:20:39 +1100 Subject: [PATCH] Rabbit: Update inst/cli/tidy.R Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com> --- inst/cli/tidy.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inst/cli/tidy.R b/inst/cli/tidy.R index 98657b3..ac47a4d 100644 --- a/inst/cli/tidy.R +++ b/inst/cli/tidy.R @@ -1,6 +1,6 @@ tidy_add_args <- function(subp) { tidy <- subp$add_parser("tidy", help = "Tidy UMCCR Workflow Outputs") - tidy$add_argument("-i", "--in_dir", help = glue("{emoji('snowman')} Directory with untidy UMCCR workflow results. Can be GDS, S3 or local."), required = TRUE) + tidy$add_argument("-i", "--in_dir", help = glue("{emoji('snowman')} Directory with untidy UMCCR workflow results. Can be S3 or local."), required = TRUE) tidy$add_argument("-o", "--out_dir", help = glue("{emoji('fire')} Directory to output tidy results."), required = TRUE) tidy$add_argument("-p", "--prefix", help = glue("{emoji('violin')} Prefix string used for all results."), required = TRUE) # tidy$add_argument("-t", "--token", help = glue("{emoji('see_no_evil')} ICA access token. Default: ICA_ACCESS_TOKEN env var."), default = Sys.getenv("ICA_ACCESS_TOKEN"))