update HISTORY for v2.3.1

umccr · Sep 7, 2023 · 9361c82 · 9361c82
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diff --git a/HISTORY.md b/HISTORY.md
@@ -6,7 +6,8 @@
 - MultiQC: remove historical `gold_standard` background refdata
 - MultiQC: bump to `v1.14+umccrise.0.0.14`
 - vcf2maf: use bioconda::vcf2maf-umccr
-- PCGR: remove `--debug` option ([issue144](https://github.com/umccr/umccrise/issues/144)).
+- install.sh: use libmamba solver instead of mamba
+- conda: explicitly add toml dependency to ummcrise env
 
 ## 2.3.0 (13 May 2023)
 

diff --git a/workflow.md b/workflow.md
@@ -545,7 +545,7 @@ The result is a list of 1248 genes.
            - `somatic_anno/pcgr_run/{SAMPLE}-somatic.pcgr_ready.vep.vcf.gz`
            - `somatic_anno/pcgr_run/{SAMPLE}-somatic.pcgr.snvs_indels.tiers.tsv`
          - Runs PCGR (first time) via
-           <https://github.com/umccr/umccrise/blob/master/scripts/pcgr>
+           <https://github.com/umccr/umccrise/blob/master/scripts/pcgr_wrap>
        - `somatic_vcf_pcgr_anno`
          - input:
            - above output VCF + tiers files