--pre is required to install alpha version of itkwidgets #50
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This does not work with Python 3.12, as ITK 5.3 is not compiled for it. Python 3.11 or earlier is required.
thewtex
reviewed
Aug 29, 2024
| @@ -785,7 +785,7 @@ | |||
| "name": "python", | |||
| "nbconvert_exporter": "python", | |||
| "pygments_lexer": "ipython3", | |||
| "version": "3.8.19" | |||
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This should stay at 3.8, which has been tested for the ML deps.
This is more suitable for debugging, and is a step towards full automation
These intermediate files can also be used for inspection later.
Applying RAS to LPS transform to atlas_FC_inner_mesh_world.ply atlas_TC_inner_mesh_world.ply makes them properly aligned with the atlas image.
We need to do this because the atlas is in left knee orientation.
This has less artifacts, because the atlas mesh is smooth before transformation.
The 3D to 2D projection results in smoother projection with the original atlas mesh, which has staircase-like artifacts.
It already existed here: notebooks\OAIData\atlas_image.nii.gz
Originally I used the image normalization method from uniGradICON, assuming it is the same as what was used before.
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This does not work with Python 3.12, as ITK 5.3 is not compiled for it.
Python 3.11 or earlier is required.