diff --git a/pr-preview/pr-458/examples/lagrangian/basic_lagrangian_box.html b/pr-preview/pr-458/examples/lagrangian/basic_lagrangian_box.html index 3447c35e5..97a8ef4d6 100644 --- a/pr-preview/pr-458/examples/lagrangian/basic_lagrangian_box.html +++ b/pr-preview/pr-458/examples/lagrangian/basic_lagrangian_box.html @@ -761,8 +761,8 @@

Executing the Box Model Simulation -
Total wall time: 23.202507257461548 seconds
-Ratio of wall time to simulation time: 0.23202507257461547
+
Total wall time: 22.94807267189026 seconds
+Ratio of wall time to simulation time: 0.2294807267189026
 
diff --git a/pr-preview/pr-458/examples/lagrangian/friction_force.html b/pr-preview/pr-458/examples/lagrangian/friction_force.html index 45a27a392..e3d5d39e9 100644 --- a/pr-preview/pr-458/examples/lagrangian/friction_force.html +++ b/pr-preview/pr-458/examples/lagrangian/friction_force.html @@ -922,8 +922,8 @@

Running the Particle Simulation -
Total wall time: 8.58533000946045 seconds
-Ratio of wall time to simulation time: 0.0858533000946045
+
Total wall time: 8.599083423614502 seconds
+Ratio of wall time to simulation time: 0.08599083423614502
 
diff --git a/pr-preview/pr-458/examples/lagrangian/sweep_and_prune.html b/pr-preview/pr-458/examples/lagrangian/sweep_and_prune.html index 887205ee9..79d693589 100644 --- a/pr-preview/pr-458/examples/lagrangian/sweep_and_prune.html +++ b/pr-preview/pr-458/examples/lagrangian/sweep_and_prune.html @@ -734,8 +734,8 @@

Initialization -
Total wall time: 1.0399844646453857 seconds
-Ratio of wall time to simulation time: 0.10399844646453857
+
Total wall time: 1.0374658107757568 seconds
+Ratio of wall time to simulation time: 0.10374658107757569
 
diff --git a/pr-preview/pr-458/examples/streamlake/loading_data_part2.html b/pr-preview/pr-458/examples/streamlake/loading_data_part2.html index 836d29bac..9e675371b 100644 --- a/pr-preview/pr-458/examples/streamlake/loading_data_part2.html +++ b/pr-preview/pr-458/examples/streamlake/loading_data_part2.html @@ -737,9 +737,7 @@

Formatting the Data
Epoch time (First 5 Entries):
-
-
-
[1.65718376e+09 1.65718385e+09 1.65718394e+09 1.65718403e+09
+[1.65718376e+09 1.65718385e+09 1.65718394e+09 1.65718403e+09
  1.65718412e+09]
 Data shape:
 (2854, 203)
diff --git a/pr-preview/pr-458/searchindex.js b/pr-preview/pr-458/searchindex.js
index 6e44974bc..f00866802 100644
--- a/pr-preview/pr-458/searchindex.js
+++ b/pr-preview/pr-458/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {" q^\\alpha ": [[23, "q-alpha"]], ".devcontainer": [[1, "devcontainer"]], "1. Correction": [[0, "correction"]], "2. Warning": [[0, "warning"]], "3. Remove the Bad data points": [[45, "remove-the-bad-data-points"]], "3. Temporary Ban": [[0, "temporary-ban"]], "4. Crop to the Start and End of the Experiment": [[45, "crop-to-the-start-and-end-of-the-experiment"]], "4. 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"Addressing the Challenge": [[37, "addressing-the-challenge"]], "Aerosol Data objects": [[50, "aerosol-data-objects"]], "Aerosol Module with Facade Pattern": [[50, "aerosol-module-with-facade-pattern"]], "Aerosol Size Distribution Scales:": [[6, "aerosol-size-distribution-scales"]], "Analysis of Simulation Results": [[47, "analysis-of-simulation-results"]], "Analyzing the Mass Distribution of Particles": [[27, "analyzing-the-mass-distribution-of-particles"], [30, "analyzing-the-mass-distribution-of-particles"]], "Applying Help to Explore Functionality": [[38, "applying-help-to-explore-functionality"]], "Approach:": [[46, "approach"]], "Attributes:": [[40, "attributes"]], "Attribution": [[0, "attribution"]], "Average the data": [[43, "average-the-data"]], "Base Distribution": [[34, "base-distribution"]], "Benefits of This Approach": [[50, "benefits-of-this-approach"]], "Bonus: Utilizing Python\u2019s Help Function": [[38, "bonus-utilizing-python-s-help-function"]], "Builder Validation": [[4, "builder-validation"]], "Building Blocks for Advanced Analysis": [[36, "building-blocks-for-advanced-analysis"]], "Building particula locally": [[1, "building-particula-locally"]], "CAPS corrections": [[33, "caps-corrections"]], "Calculate the Activity Coefficients": [[25, "calculate-the-activity-coefficients"]], "Calculating Optical Properties of Humidified Particles": [[34, "calculating-optical-properties-of-humidified-particles"]], "Calculating and Visualizing Hygroscopic Growth": [[34, "calculating-and-visualizing-hygroscopic-growth"]], "Calculation Steps": [[35, "calculation-steps"]], "Challenges with Sub-Micron Aerosols": [[28, "challenges-with-sub-micron-aerosols"]], "Chamber Analysis": [[45, "chamber-analysis"]], "Chamber Forward Simulation": [[47, "chamber-forward-simulation"]], "Chamber Wall Loss Analysis": [[48, "chamber-wall-loss-analysis"]], "Clean Up Data": [[38, "clean-up-data"]], "Clean up the data": [[43, "clean-up-the-data"], [45, "clean-up-the-data"]], "Code Description": [[6, "code-description"], [6, "id1"]], "Code for Printing Summaries": [[39, "code-for-printing-summaries"]], "Code of Conduct": [[0, "code-of-conduct"]], "Collaborative Publications (Secondary role in helping setup the codebase for collaborators)": [[51, "collaborative-publications-secondary-role-in-helping-setup-the-codebase-for-collaborators"]], "Comparison Insights": [[6, "comparison-insights"]], "Concept of Sweep and Prune": [[30, "concept-of-sweep-and-prune"]], "Conclusion": [[28, "conclusion"], [51, "conclusion"]], "Conclusions": [[6, "conclusions"]], "Conclusions and Implications": [[35, "conclusions-and-implications"]], "Consequences and Mitigation Strategies": [[32, "consequences-and-mitigation-strategies"]], "Consistency Across Methods": [[4, "consistency-across-methods"]], "Contour Plot of Data": [[39, "contour-plot-of-data"]], "Contributing to particula": [[49, "contributing-to-particula"]], "Contributor Guidelines": [[1, "contributor-guidelines"]], "Conversion from PMS to PDF": [[6, "conversion-from-pms-to-pdf"]], "Converting Distributions": [[6, "converting-distributions"]], "Core Functions": [[4, "core-functions"]], "Correcting Scattering Truncation 1000 nm Distribution": [[37, "correcting-scattering-truncation-1000-nm-distribution"]], "Correcting Scattering Truncation 250 nm Distribution": [[37, "correcting-scattering-truncation-250-nm-distribution"]], "Creating the Contour Plot": [[39, "creating-the-contour-plot"]], "Current Approach": [[28, "current-approach"]], "Data Averaging": [[40, "data-averaging"]], "Data Preparation: Loading and Converting SMPS Data": [[46, "data-preparation-loading-and-converting-smps-data"]], "Data Preparation: Time Window Selection and Data Cleaning": [[46, "data-preparation-time-window-selection-and-data-cleaning"]], "Data Saving and Analysis": [[27, "data-saving-and-analysis"]], "Data and Time": [[38, "data-and-time"]], "Data in Particula": [[42, "data-in-particula"]], "Dates in Plots": [[39, "dates-in-plots"]], "Defining Simulation Functions": [[46, "defining-simulation-functions"]], "Defining a distribution": [[52, "defining-a-distribution"]], "Defining the System: Parameters and Initial Conditions": [[27, "defining-the-system-parameters-and-initial-conditions"]], "Demonstrating Insensitivity through Particle Number Variation": [[35, "demonstrating-insensitivity-through-particle-number-variation"]], "Direct Strategy, Builder, and Factory Patterns": [[4, "direct-strategy-builder-and-factory-patterns"]], "Discrete Concepts (Functions)": [[51, "discrete-concepts-functions"]], "Distribution coagulation": [[20, "distribution-coagulation"]], "Distribution evolution": [[21, "distribution-evolution"]], "Distribution statistics": [[22, "distribution-statistics"]], "Distributions": [[19, "distributions"]], "Documentation writing": [[1, "documentation-writing"]], "Effective Refractive Index Calculation": [[34, "effective-refractive-index-calculation"]], "Efficiency Considerations": [[28, "efficiency-considerations"]], "Efficiency Gains": [[30, "efficiency-gains"]], "Efficient Data Loading with the Interface": [[39, "efficient-data-loading-with-the-interface"]], "Enforcement": [[0, "enforcement"]], "Enforcement Guidelines": [[0, "enforcement-guidelines"]], "Enforcement Responsibilities": [[0, "enforcement-responsibilities"]], "Enhancing Particle Realism and Model Complexity": [[27, "enhancing-particle-realism-and-model-complexity"]], "Environment attributes": [[2, "environment-attributes"]], "Environment methods": [[2, "environment-methods"]], "Environment.dynamic_viscosity()": [[2, "environment-dynamic-viscosity"]], "Environment.mean_free_path()": [[2, "environment-mean-free-path"]], "Equilibria of Aerosols": [[24, "equilibria-of-aerosols"]], "Examining the Impact of Dry Refractive Index on Kappa-HGF Estimation": [[35, "examining-the-impact-of-dry-refractive-index-on-kappa-hgf-estimation"]], "Example": [[50, "example"]], "Example: Antoine Equation Vapor Pressure Strategy": [[4, "example-antoine-equation-vapor-pressure-strategy"]], "Examples:": [[6, "examples"]], "Executing the Box Model Simulation": [[27, "executing-the-box-model-simulation"]], "Expand the Factory": [[6, "expand-the-factory"]], "Exploring Other Collision Detection Methods": [[30, "exploring-other-collision-detection-methods"]], "Exploring Variations in Chamber Simulation": [[47, "exploring-variations-in-chamber-simulation"]], "Exploring the Stream Class in Particula": [[38, "exploring-the-stream-class-in-particula"]], "FY24 Deliverables": [[51, "fy24-deliverables"]], "FY24 Plan": [[51, "fy24-plan"]], "Fitting Kappa-HGF from Light Extinction": [[35, "fitting-kappa-hgf-from-light-extinction"]], "Fitting Kappa-HGF to Dry Aerosol Data": [[35, "fitting-kappa-hgf-to-dry-aerosol-data"]], "Fitting Kappa-HGF under Varied Humidity Conditions": [[35, "fitting-kappa-hgf-under-varied-humidity-conditions"]], "For loop Graph": [[21, "for-loop-graph"]], "Formatting the Data": [[39, 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[[23, "higher-oxygen-to-carbon-ratios"]], "How Does Equilibria Relate to These Notebooks?": [[24, "how-does-equilibria-relate-to-these-notebooks"]], "How to Use the Help Function": [[38, "how-to-use-the-help-function"]], "Hygroscopic Growth Parameters": [[35, "hygroscopic-growth-parameters"]], "Hygroscopic Growth in Aerosol Particles": [[34, "hygroscopic-growth-in-aerosol-particles"]], "Implementation": [[50, "implementation"]], "Implementation Consideration": [[50, "implementation-consideration"]], "Implementation Details": [[34, "implementation-details"]], "Implementing Truncation Correction with Python": [[37, "implementing-truncation-correction-with-python"]], "Implementing the Friction Factor in the Simulation": [[28, "implementing-the-friction-factor-in-the-simulation"]], "Implications for Ambient Aerosol Measurements": [[35, "implications-for-ambient-aerosol-measurements"]], "Importing Packages": [[38, "importing-packages"]], "Imports": [[34, "imports"]], "Initial Simulation Setup": [[47, "initial-simulation-setup"]], "Initialization": [[30, "initialization"]], "Initialization of Particles": [[28, "initialization-of-particles"], [31, "initialization-of-particles"]], "Insensitivity to Humidity in Sizer and Extinction Measurements": [[35, "insensitivity-to-humidity-in-sizer-and-extinction-measurements"]], "Insights Gained": [[27, "insights-gained"]], "Insights and Reflections": [[51, "insights-and-reflections"]], "Insights from Truncation Correction": [[37, "insights-from-truncation-correction"]], "Installing particula": [[49, "installing-particula"]], "Interface Concepts (Procedures)": [[51, "interface-concepts-procedures"]], "Introduction to Aerosol Optics": [[32, "introduction-to-aerosol-optics"]], "Introduction to the Lagrangian Box Model": [[27, "introduction-to-the-lagrangian-box-model"]], "Ion\u2013particle coagulation": [[26, "ionparticle-coagulation"]], "Kappa-HGF Fitting": [[35, "kappa-hgf-fitting"]], "Key Features of the Stream Class": [[38, "key-features-of-the-stream-class"]], "Key Insights": [[35, "key-insights"]], "Key Parameters for Hygroscopic Growth:": [[34, "key-parameters-for-hygroscopic-growth"]], "Lagrangian Particle Model": [[29, "lagrangian-particle-model"]], "Lake Class Overview": [[40, "lake-class-overview"]], "Lake settings": [[41, "lake-settings"]], "Leveraging PyTorch for Enhanced Computational Performance": [[27, "leveraging-pytorch-for-enhanced-computational-performance"]], "Leveraging Truncation Corrections for Broader Applications": [[37, "leveraging-truncation-corrections-for-broader-applications"]], "Liquid Vapor Equilibrium": [[25, "liquid-vapor-equilibrium"]], "Load the Data": [[39, "load-the-data"], [40, "load-the-data"]], "Load the Data with the Interface": [[38, "load-the-data-with-the-interface"]], "Load the Lake": [[41, "load-the-lake"]], "Load the data": [[43, "load-the-data"], [44, "load-the-data"], [45, "load-the-data"]], "Loading Part 1: Into & 1D Data": [[38, 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"particle-number-concentration-density"]], "ParticleDistribution attributes": [[5, "particledistribution-attributes"]], "ParticleDistribution methods": [[5, "particledistribution-methods"]], "ParticleDistribution.pre_discretize()": [[5, "particledistribution-pre-discretize"]], "ParticleDistribution.pre_distribution()": [[5, "particledistribution-pre-distribution"]], "ParticleDistribution.pre_radius()": [[5, "particledistribution-pre-radius"]], "ParticleInstances attributes": [[5, "particleinstances-attributes"]], "ParticleInstances methods": [[5, "particleinstances-methods"]], "ParticleInstances.friction_factor()": [[5, "particleinstances-friction-factor"]], "ParticleInstances.knudsen_number()": [[5, "particleinstances-knudsen-number"]], "ParticleInstances.particle_distribution()": [[5, "particleinstances-particle-distribution"]], "ParticleInstances.particle_mass()": [[5, "particleinstances-particle-mass"]], "ParticleInstances.slip_correction_factor()": [[5, "particleinstances-slip-correction-factor"]], "Particula tour": [[52, "particula-tour"]], "Particula v0.1.0 Release": [[51, "particula-v0-1-0-release"]], "Pause to Plot": [[39, "pause-to-plot"], [45, "pause-to-plot"]], "Pause to Plot the data": [[40, "pause-to-plot-the-data"]], "Pause to Plot: Verifying Data Integrity": [[38, "pause-to-plot-verifying-data-integrity"]], "Performance Considerations": [[28, "performance-considerations"]], "Performing Chamber Simulation and Optimization": [[46, "performing-chamber-simulation-and-optimization"]], "Plot Positions": [[30, "plot-positions"]], "Plot the Averaged Data": [[40, "plot-the-averaged-data"]], "Plot the Cleaned Data": [[45, "plot-the-cleaned-data"]], "Plot the Data": [[44, "plot-the-data"]], "Plot the averaged data": [[43, "plot-the-averaged-data"]], "Plot the distributions": [[45, "plot-the-distributions"]], "Plot the particle PDF": [[22, "plot-the-particle-pdf"]], "Plotting Again": [[39, "plotting-again"]], "Plotting Data Using the Stream Object": [[38, "plotting-data-using-the-stream-object"]], "Plotting Initial Conditions": [[28, "plotting-initial-conditions"], [31, "plotting-initial-conditions"]], "Plotting Particle Positions": [[28, "plotting-particle-positions"], [31, "plotting-particle-positions"]], "Plotting the Activity and Phase Separation": [[23, "plotting-the-activity-and-phase-separation"]], "Plotting the Equilibrium Composition vs. Relative Humidity": [[25, "plotting-the-equilibrium-composition-vs-relative-humidity"]], "Positive Observations": [[28, "positive-observations"]], "Practical Application": [[38, "practical-application"]], "Practical Implications": [[36, "practical-implications"]], "Preparing the Data for Contour Plotting": [[39, "preparing-the-data-for-contour-plotting"]], "Printing Data Stream Summaries": [[39, "printing-data-stream-summaries"]], "Processes (Coagulation, Vapor Equilibrium, Chemical Reaction, Nucleation)": [[50, "processes-coagulation-vapor-equilibrium-chemical-reaction-nucleation"]], "Processing Objects": [[50, "processing-objects"]], "Processing the Stream": [[44, "processing-the-stream"]], "Program Outline Revision Draft": [[50, "program-outline-revision-draft"]], "Python code style": [[1, "python-code-style"]], "Quick links": [[49, "quick-links"]], "Realistic Drag, Mass, and Velocity": [[28, "realistic-drag-mass-and-velocity"], [31, "realistic-drag-mass-and-velocity"]], "Refactoring Particula": [[51, "refactoring-particula"]], "Refractive Index Mixing Rule": [[34, "refractive-index-mixing-rule"]], "Returns": [[36, "returns"]], "Review of Particula\u2019s Utilization": [[51, "review-of-particula-s-utilization"]], "Revision of Gas with multiple species": [[50, "revision-of-gas-with-multiple-species"]], "Robustness of Kappa-HGF Estimation Against Particle Number Variations": [[35, "robustness-of-kappa-hgf-estimation-against-particle-number-variations"]], "Running Final Simulation:": [[46, 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[[38, "setting-the-working-path"], [40, "setting-the-working-path"]], "Settings Dictionary: Centralizing Data Loading Parameters": [[38, "settings-dictionary-centralizing-data-loading-parameters"]], "Setup": [[52, "setup"]], "Setup the System": [[25, "setup-the-system"]], "Simple Wall Loss Fit": [[46, "simple-wall-loss-fit"]], "Simplifying Data Import with the Settings Generator": [[39, "simplifying-data-import-with-the-settings-generator"]], "Simulating Light Extinction for Hygroscopic Growth": [[35, "simulating-light-extinction-for-hygroscopic-growth"]], "Simulation Process": [[27, "simulation-process"]], "Size Distribution": [[35, "size-distribution"]], "Size Distribution Stats": [[44, "size-distribution-stats"]], "Size Distribution of Particles": [[28, "size-distribution-of-particles"], [31, "size-distribution-of-particles"]], "Size-Dependent Nature of Scattering Truncation": [[37, "size-dependent-nature-of-scattering-truncation"]], "Strategies for Vapor Pressure Calculations": [[4, "strategies-for-vapor-pressure-calculations"]], "Stream Object: Streamlining Your Analysis": [[38, "stream-object-streamlining-your-analysis"]], "Stream: Averaging and Outliers": [[43, "stream-averaging-and-outliers"]], "Summary": [[4, "summary"], [19, "summary"], [23, "summary"], [25, "summary"], [34, "summary"], [36, "summary"], [37, "summary"], [38, "summary"], [40, "summary"], [41, "summary"], [43, "summary"], [44, "summary"], [45, "summary"]], "Summary of Cloud Droplet Simulation": [[28, "summary-of-cloud-droplet-simulation"]], "Summary of Implementation": [[6, "summary-of-implementation"]], "Summary of Kappa-HGF Fitting Notebook": [[35, "summary-of-kappa-hgf-fitting-notebook"]], "Summary of Loading Data Part 2": [[39, "summary-of-loading-data-part-2"]], "Summary of the Aerosol Chamber Dynamics Notebook": [[47, "summary-of-the-aerosol-chamber-dynamics-notebook"]], "Summary of the Lagrangian Particle Simulation": [[27, "summary-of-the-lagrangian-particle-simulation"]], 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+Search.setIndex({"alltitles": {" q^\\alpha ": [[23, "q-alpha"]], ".devcontainer": [[1, "devcontainer"]], "1. Correction": [[0, "correction"]], "2. Warning": [[0, "warning"]], "3. Remove the Bad data points": [[45, "remove-the-bad-data-points"]], "3. Temporary Ban": [[0, "temporary-ban"]], "4. Crop to the Start and End of the Experiment": [[45, "crop-to-the-start-and-end-of-the-experiment"]], "4. 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Strategy": [[4, "example-antoine-equation-vapor-pressure-strategy"]], "Examples:": [[6, "examples"]], "Executing the Box Model Simulation": [[27, "executing-the-box-model-simulation"]], "Expand the Factory": [[6, "expand-the-factory"]], "Exploring Other Collision Detection Methods": [[30, "exploring-other-collision-detection-methods"]], "Exploring Variations in Chamber Simulation": [[47, "exploring-variations-in-chamber-simulation"]], "Exploring the Stream Class in Particula": [[38, "exploring-the-stream-class-in-particula"]], "FY24 Deliverables": [[51, "fy24-deliverables"]], "FY24 Plan": [[51, "fy24-plan"]], "Fitting Kappa-HGF from Light Extinction": [[35, "fitting-kappa-hgf-from-light-extinction"]], "Fitting Kappa-HGF to Dry Aerosol Data": [[35, "fitting-kappa-hgf-to-dry-aerosol-data"]], "Fitting Kappa-HGF under Varied Humidity Conditions": [[35, "fitting-kappa-hgf-under-varied-humidity-conditions"]], "For loop Graph": [[21, "for-loop-graph"]], "Formatting the Data": [[39, 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[[23, "higher-oxygen-to-carbon-ratios"]], "How Does Equilibria Relate to These Notebooks?": [[24, "how-does-equilibria-relate-to-these-notebooks"]], "How to Use the Help Function": [[38, "how-to-use-the-help-function"]], "Hygroscopic Growth Parameters": [[35, "hygroscopic-growth-parameters"]], "Hygroscopic Growth in Aerosol Particles": [[34, "hygroscopic-growth-in-aerosol-particles"]], "Implementation": [[50, "implementation"]], "Implementation Consideration": [[50, "implementation-consideration"]], "Implementation Details": [[34, "implementation-details"]], "Implementing Truncation Correction with Python": [[37, "implementing-truncation-correction-with-python"]], "Implementing the Friction Factor in the Simulation": [[28, "implementing-the-friction-factor-in-the-simulation"]], "Implications for Ambient Aerosol Measurements": [[35, "implications-for-ambient-aerosol-measurements"]], "Importing Packages": [[38, "importing-packages"]], "Imports": [[34, "imports"]], "Initial Simulation 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