Skip to content

Issues: usegalaxy-eu/FAIRyMAGs

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

30 Open 0 Closed
30 Open 0 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Generate ML features with Galaxy T3.1
#30 opened Jan 16, 2025 by paulzierep
4 tasks
Validate the main workflow T1.3
#29 opened Jan 16, 2025 by paulzierep
2 tasks
Publish Benchmark Workflow T1.3
#28 opened Jan 16, 2025 by paulzierep
2 tasks
Finalize the CAMI Binning Benchmark Workflow T1.3
#27 opened Jan 16, 2025 by paulzierep
7 tasks
@SantaMcCloud
4
Add minimal test data T1.2
#26 opened Jan 16, 2025 by paulzierep
1 task
Check IWC requirements T1.2
#25 opened Jan 16, 2025 by paulzierep
1 task
M3.1: Prototype and metadata of Galaxy workflow
Create workflow feature table and prioritize features T1.1
#24 opened Jan 15, 2025 by paulzierep M3.1: Prototype and metadata of Galaxy workflow
Add genome annotation to workflow T1.1
#23 opened Jan 15, 2025 by paulzierep
2 tasks
M3.1: Prototype and metadata of Galaxy workflow
Add taxonomic classification to workflow T1.1
#22 opened Jan 15, 2025 by paulzierep
1 of 3 tasks
M3.1: Prototype and metadata of Galaxy workflow
@paulzierep @SantaMcCloud
D3.6: Abstract for a talk at a conference submitted Deliverable
#21 opened Jan 15, 2025 by paulzierep
D3.5: Blogpost summarising the hackathon outcomes Deliverable
#20 opened Jan 15, 2025 by paulzierep
D3.4: Machine-Learning model registered on DOME registry and implemented to predict needed computational resources of metagenomic assembly tools for given input data and rules integrated into Galaxy Total Perspective Vortex (TPV) Deliverable
#19 opened Jan 15, 2025 by paulzierep
D3.3: Tutorial hosted on the Galaxy Training Network and visible on ELIXIR’ TeSS Deliverable
#18 opened Jan 15, 2025 by paulzierep
D3.2 Assessed MAGs and their quality for the 3 selected real-world datasets Deliverable
#17 opened Jan 15, 2025 by paulzierep
T4:3: Submit to present the work at a relevant scientific conference (M28-M30)
#16 opened Jan 15, 2025 by paulzierep
T4.2: Write a manuscript for a peer-reviewed journal (M15-M30)
#15 opened Jan 15, 2025 by paulzierep
T4.1: Organise and conduct hackathon in Freiburg (M15-M22)
#14 opened Jan 15, 2025 by paulzierep
2
T3.4: Integrate the resource allocation tool and rules for resource allocation in Galaxy using Galaxy Total Perspective Vortex (TPV) (M27-M28)
#13 opened Jan 15, 2025 by paulzierep
T3.3: Implement a tool for using this model to predict computational resources required for executing the workflow on different input datasets (M23-M27)
#12 opened Jan 15, 2025 by paulzierep
T3.2: Build a Machine-learning model to predict the needed computational resources for the assembly based on the k-mer profile (M19-M22)
#11 opened Jan 15, 2025 by paulzierep
T3.1: Analyse the needed computational resources for metagenomics assembly using data provided by the MGnify platform and k-mer profiles of the input data (M14-M18) T3.1
#10 opened Jan 15, 2025 by paulzierep
T2.4: Organise and conduct one online workshop using the developed training material (M26-M30)
#9 opened Jan 14, 2025 by paulzierep
T2.3: Publish training materials on the Galaxy Training Network, making them freely accessible to the global research community (M25-M25)
#8 opened Jan 14, 2025 by paulzierep
T2.1: Develop a tutorial tailored for researchers with varying levels of expertise (M16-M20)
#7 opened Jan 14, 2025 by paulzierep
T2.2: Collaborate with experts from the ELIXIR Microbiome and Galaxy Community to ensure the accuracy, relevance, and accessibility of training materials
#6 opened Jan 14, 2025 by paulzierep
ProTip! Type g i on any issue or pull request to go back to the issue listing page.