Merge pull request #49 from Lut99/master

Adding containerization support

Author: leegbestand

.dockerignore

@@ -0,0 +1,3 @@
+Dockerfile
+docker-compose.yml
+

.hugo_build.lock

@@ -0,0 +1,40 @@
+# DOCKERFILE for the CCI-WEBSITE
+#   by Tim Müller
+# 
+# Hosts the website in a Docker container for convenience.
+# 
+
+FROM ubuntu:24.04
+
+# Setup a dedicate user (for safetiez)
+ARG USER_ID=1000
+ARG GROUP_ID=1000
+RUN userdel -r ubuntu \
+ && groupadd --gid $GROUP_ID hugo \
+ && useradd -u $USER_ID -g $GROUP_ID hugo \
+ && mkdir -p /home/hugo && chown -R hugo:hugo /home/hugo
+
+# Install system deps
+RUN apt-get update && apt-get install -y \
+    curl tar git gcc g++ \
+ && rm -rf /var/lib/apt/lists/*
+
+# Install GO
+USER hugo
+RUN /bin/bash -c 'curl -L https://go.dev/dl/go1.22.5.linux-amd64.tar.gz --output - | tar -C /home/hugo -xz'
+ENV PATH="$PATH:/home/hugo/go/bin"
+# ENV GOPATH="/home/hugo/go"
+
+# Install Hugo from source
+RUN CGO_ENABLED=1 go install -tags extended github.com/gohugoio/[email protected]
+
+# Copy the website
+COPY --chown=hugo:hugo . /www
+
+# Install the required hugo modules
+WORKDIR /www
+RUN /bin/bash ./update_wowchemy.sh
+
+# View the website upon container launch
+ENTRYPOINT [ "hugo", "server", "--bind", "0.0.0.0" ]
+

Dockerfile

@@ -4,4 +4,33 @@ This repo uses https://gohugo.io/ for building the website https://cci-research.
 
 ## How To Make
 
-This repo uses the github actions for CI/CD of this repo into the github pages repo. ![github pages](https://github.com/uva-cci/cci-website/workflows/github%20pages/badge.svg?branch=master)
+This repo uses the github actions for CI/CD of this repo into the github pages repo. ![github pages](https://github.com/uva-cci/cci-website/workflows/github%20pages/badge.svg?branch=master)
+
+
+## Host locally
+When you're making local edits to the website, you can manually run it from your machine.
+
+This repository contains a Dockerfile for launching the website with [Docker](https://docker.com), which is the recommended method. To do so, make sure that you [install](https://docs.docker.com/get-started/get-docker/) it first, and then run:
+```sh
+docker compose up
+```
+from the project root. To access the local version of your website, simply go to <http://localhost:1313> in your browser.
+
+Alternatively, you can also run the website locally. First, make sure that you install [Go](https://go.dev/learn/). Then, you can install Hugo for your user by running:
+```sh
+CGO_ENABLED=1 go install -tags extended github.com/gohugoio/[email protected]
+```
+
+Once installed, install the required website modules by executing:
+```sh
+./update_wowchemy.sh
+```
+in the project's root.
+
+Finally, you can launch the website on port 1313 by running:
+```sh
+hugo server
+```
+in the project's root.
+
+In both cases, the Hugo server will serve the website in the Github repository. If you make any changes, you can view them by simply refreshing the web page.

README.md

@@ -18,6 +18,11 @@
   url = "#publications"
   weight = 25
 
+[[main]]
+  name = "Research themes"
+  url = "#themes"
+  weight = 27
+
 [[main]]
   name = "Projects"
   url = "#projects"

assets/media/albums/governance/amdex.png

@@ -1,6 +1,6 @@
 ---
 # Display name
-title: Tim Muller
+title: Tim Müller
 #8f9521
 # Username (this should match the folder name)
 authors:
@@ -15,13 +15,36 @@ role: Scientific Programmer
 # Organizations/Affiliations
 organizations:
 - name: University of Amsterdam
-  url: ""
+  url: "https://uva.nl"
 
 # Short bio (displayed in user profile at end of posts)
 # bio: My research interests include distributed robotics, mobile computing and programmable matter.
 
-#interests:
-#- Smart Contracts
+education:
+  courses:
+  - course: BSc Kunstmatige Intelligentie
+    institution: University of Amsterdam
+    year: 2019
+
+interests:
+- Distributed Computing
+- Workflow Systems
+- Programming Languages
+- Normative Reasoning
+
+social:
+- icon: orcid
+  icon_pack: fab
+  link: https://orcid.org/0000-0002-9759-5973
+- icon: google-scholar
+  icon_pack: ai
+  link: https://scholar.google.com/citations?user=SJXxKbQAAAAJ&hl=en&oi=sra
+- icon: linkedin
+  icon_pack: fab
+  link: https://www.linkedin.com/in/tim-m%C3%BCller-216810241/
+- icon: github
+  icon_pack: fab
+  link: https://github.com/Lut99
 
 
 # Social/Academic Networking
@@ -45,3 +68,7 @@ highlight_name: false
 user_groups:
 - Research, Technical and Administrative Support
 ---
+
+My name is Tim and I'm a Scientific Programmer at the University of Amsterdam. I work with other PhD students and professors to support their research, usually technically but generally where possible. I'm happiest when that work involves writing compilers ([eFLINT](https://gitlab.com/eflint)) or workflow systems ([BRANE](https://github.com/epi-project/brane)).
+
+In my spare time I like drumming, reading, cycling gaming and programming (I swear it's different programming from my work). I also hang out a lot with my friends and colleagues.

assets/media/albums/governance/dl4ld.jpg

@@ -0,0 +1,29 @@
++++
+# A Projects section created with the Portfolio widget.
+widget = "portfolio"  # See https://sourcethemes.com/academic/docs/page-builder/
+headless = true  # This file represents a page section.
+active = true  # Activate this widget? true/false
+weight = 57  # Order that this section will appear.
+
+title = "Research themes"
+subtitle = ""
+
+
+[content]
+  # Page type to display. E.g. post, talk, or publication.
+  page_type = "theme"
+
+  sort_by = 'name'
+
+  [content.filters]
+    folders = ["theme"]
+
+[design]
+  # Toggle between the various page layout types.
+  #   1 = List
+  #   2 = Compact
+  #   3 = Card
+  #   4 = Citation (publication only)
+  view = 3
+
++++

assets/media/albums/governance/epi.png

@@ -0,0 +1,40 @@
+---
+title: DMI
+summary: Dutch Metropolitan Innovations
+tags:
+- Data
+date: "2016-04-27T00:00:00Z"
+
+# Optional external URL for project (replaces project detail page).
+external_link: ""
+
+links:
+- icon: hyperlink
+  icon_pack: fab
+  name: Project Homepage
+  url: https://dmi-ecosysteem.nl
+- icon: hyperlink
+  icon_pack: fab
+  name: More Information
+  url: https://dmi-ecosysteem.nl
+url_code: ""
+url_pdf: ""
+url_slides: ""
+url_video: ""
+
+# Slides (optional).
+#   Associate this project with Markdown slides.
+#   Simply enter your slide deck's filename without extension.
+#   E.g. `slides = "example-slides"` references `content/slides/example-slides.md`.
+#   Otherwise, set `slides = ""`.
+slides: example
+---
+
+The DMI ecosystem is a public-private partnership that facilitates the responsible sharing and use of
+data on a solid foundation of mutual trust, clear agreements and open standards. This creates new
+business opportunities for a variety of market players, which in turn enables government bodies to
+give concrete form and substance to mobility innovation and smart and sustainable urbanisation.
+The DMI ecosystem ensures a better connection between the various domains and stakeholders, in
+order to be able to optimise continuously and coherently on that same basis. As a result, the
+intended agglomeration effects and a sustainable society with vibrant towns and cities will be
+achieved faster.

assets/media/albums/governance/sspddp.png

@@ -0,0 +1,10 @@
+@INPROCEEDINGS{9582400,
+  author={Kassem, Jamila Alsayed and Valkering, Onno and Belloum, Adam and Grosso, Paola},
+  booktitle={2021 IEEE 17th International Conference on eScience (eScience)}, 
+  title={EPI Framework: Approach for Traffic Redirection Through Containerised Network Functions}, 
+  year={2021},
+  volume={},
+  number={},
+  pages={80-89},
+  keywords={Conferences;Collaboration;Medical services;Tools;Benchmark testing;Generators;Security;containerised network functions;traffic redirection;programmable infrastructures;personalised medicine},
+  doi={10.1109/eScience51609.2021.00018}}

config/_default/menus.toml

@@ -0,0 +1,42 @@
+---
+# Documentation: https://wowchemy.com/docs/managing-content/
+
+title: "EPI Framework: Approach for Traffic Redirection Through Containerised Network Functions"
+subtitle: ''
+summary: ''
+authors:
+- Jamila Alsayed Kassem
+- Onno Valkering
+- Adam Belloum
+- Paola Grosso
+tags: []
+categories: []
+date: '2021-01-01'
+lastmod: 2022-05-31T10:27:38+02:00
+featured: false
+draft: false
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder.
+# Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight.
+image:
+  caption: ''
+  focal_point: ''
+  preview_only: false
+
+# Projects (optional).
+#   Associate this post with one or more of your projects.
+#   Simply enter your project's folder or file name without extension.
+#   E.g. `projects = ["internal-project"]` references `content/project/deep-learning/index.md`.
+#   Otherwise, set `projects = []`.
+projects: ["EPI"]
+publishDate: '2021-01-01T00:00:00.000000Z'
+publication_types:
+- '1'
+abstract: ''
+publication: '*2021 IEEE 17th International Conference on eScience (eScience)*'
+doi: 10.1109/eScience51609.2021.00018
+links:
+- name: URL
+  url: https://ieeexplore.ieee.org/document/9582400
+---

content/authors/tim/_index.md

@@ -0,0 +1,10 @@
+@INPROCEEDINGS{9973638,
+  author={Kassem, Jamila Alsayed and Belloum, Adam and Müller, Tim and Grosso, Paola},
+  booktitle={2022 IEEE 18th International Conference on e-Science (e-Science)}, 
+  title={Utilisation Profiles of Bridging Function Chain for Healthcare Use Cases}, 
+  year={2022},
+  volume={},
+  number={},
+  pages={475-480},
+  keywords={Heating systems;Network topology;Firewalls (computing);Roads;Medical services;Containers;Topology;Virtual Network Function;Programmable Infrastructures;Network Policy;Resource profiling},
+  doi={10.1109/eScience55777.2022.00085}}

content/authors/tim/avatar.JPEG

@@ -0,0 +1,42 @@
+---
+# Documentation: https://wowchemy.com/docs/managing-content/
+
+title: "Utilisation Profiles of Bridging Function Chain for Healthcare Use Cases"
+subtitle: ''
+summary: ''
+authors:
+- Jamila Alsayed Kassem
+- Adam Belloum
+- tim
+- Paola Grosso
+tags: []
+categories: []
+date: '2022-01-01'
+lastmod: 2022-05-31T10:27:38+02:00
+featured: false
+draft: false
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder.
+# Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight.
+image:
+  caption: ''
+  focal_point: ''
+  preview_only: false
+
+# Projects (optional).
+#   Associate this post with one or more of your projects.
+#   Simply enter your project's folder or file name without extension.
+#   E.g. `projects = ["internal-project"]` references `content/project/deep-learning/index.md`.
+#   Otherwise, set `projects = []`.
+projects: ["EPI"]
+publishDate: '2022-01-01T00:00:00.000000Z'
+publication_types:
+- '1'
+abstract: ''
+publication: '*2022 IEEE 18th International Conference on eScience (eScience)*'
+doi: 10.1109/eScience55777.2022.00085
+links:
+- name: URL
+  url: https://ieeexplore.ieee.org/document/9973638
+---

content/authors/tim/avatar.png

@@ -0,0 +1,16 @@
+@InProceedings{10.1007/978-3-031-62645-6_4,
+author="Esterhuyse, Christopher A.
+and M{\"u}ller, Tim
+and van Binsbergen, L. Thomas",
+editor="Castiglioni, Valentina
+and Francalanza, Adrian",
+title="JustAct: Actions Universally Justified by Partial Dynamic Policies",
+booktitle="Formal Techniques for Distributed Objects, Components, and Systems",
+year="2024",
+publisher="Springer Nature Switzerland",
+address="Cham",
+pages="60--81",
+abstract="Inter-organisational data exchange is regulated by norms originating from sources ranging from individual consent to (inter)national laws. Verifying norm-compliance is complex because laws (e.g., GDPR) distribute responsibility and require accountability. Moreover, in some domains (e.g., healthcare), the norms themselves may be private. In contrast, standard solutions (e.g., access- and usage-control, smart contracts) reason about policies that are assumed to be public. Instead, we present a novel framework prescribing how decentralised agents decide which actions are justified, despite their partial views of the policy. Crucially, justifications are universal, e.g., accepted by future auditors. Agents establish a common notion of compliance through an (externally synchronized) agreement, which is the basis of each justification defined by policy fragments agents autonomously create, gossip, and assemble.",
+isbn="978-3-031-62645-6"
+}
+

content/home/themes.md

@@ -0,0 +1,41 @@
+---
+# Documentation: https://wowchemy.com/docs/managing-content/
+
+title: "JustAct: Actions Universally Justified by Partial Dynamic Policies"
+subtitle: ''
+summary: ''
+authors:
+- chris
+- tim
+- thomas
+tags: []
+categories: []
+date: '2024-01-01'
+lastmod: 2024-05-31T10:27:38+02:00
+featured: false
+draft: false
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder.
+# Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight.
+image:
+  caption: ''
+  focal_point: ''
+  preview_only: false
+
+# Projects (optional).
+#   Associate this post with one or more of your projects.
+#   Simply enter your project's folder or file name without extension.
+#   E.g. `projects = ["internal-project"]` references `content/project/deep-learning/index.md`.
+#   Otherwise, set `projects = []`.
+projects: ["AMDEX", "DMI", "EPI"]
+publishDate: '2024-01-01T00:00:00.000000Z'
+publication_types:
+- '2'
+abstract: ''
+publication: '*Formal Techniques for Distributed Objects, Components, and Systems (FORTE 2024)*'
+doi: 10.1007/978-3-031-62645-6_4
+links:
+- name: URL
+  url: https://link.springer.com/chapter/10.1007/978-3-031-62645-6_4
+---

content/project/DMI/featured.png

@@ -0,0 +1,8 @@
+@incollection{kebede2023towards,
+  title={Towards a Purpose-Based Access Control Model Derived from the Purpose Limitation Principle},
+  author={Kebede, Milen G and van Binsbergen, Thomas and van Engers, Tom and van Vuurden, Dannis G},
+  booktitle={Legal Knowledge and Information Systems},
+  pages={143--148},
+  year={2023},
+  publisher={IOS Press}
+}