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Dear Authors,
Thank you for the wonderful application.
I have tried to run the example like the below and encountered a RuntimeError. Could please have a look and give me a guide to resolve the error?
Thank you, Luke
-------------- run_RF2.sh rcsb_pdb_7ZLR.fasta --pair -o 7ZLR (/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2) [u6062494@grn009:examples]$ ../run_RF2.sh rcsb_pdb_7ZLR.fasta --pair -o 7ZLR Running HHblits -> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_1.fa 7ZLR rcsb_pdb_7ZLR_1 8 64 Running HHblits -> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_2.fa 7ZLR rcsb_pdb_7ZLR_2 8 64 Running HHblits -> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_3.fa 7ZLR rcsb_pdb_7ZLR_3 8 64 Creating merged MSA -> Running command: python /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_paired_MSA_simple.py 7ZLR/rcsb_pdb_7ZLR_1.msa0.a3m 7ZLR/rcsb_pdb_7ZLR_2.msa0.a3m 7ZLR/rcsb_pdb_7ZLR_3.msa0.a3m > 7ZLR/rcsb_pdb_7ZLR_1.rcsb_pdb_7ZLR_2.rcsb_pdb_7ZLR_3.a3m Running RoseTTAFold2 to predict structures -> Running command: python /scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py -inputs 7ZLR/rcsb_pdb_7ZLR_1.rcsb_pdb_7ZLR_2.rcsb_pdb_7ZLR_3.a3m -prefix 7ZLR/models/model -model /scratch/general/vast/u6062494/tools/RoseTTAFold2/network/weights/RF2_apr23.pt -db /scratch/general/vast/u6062494/tools/RoseTTAFold2/pdb100_2021Mar03/pdb100_2021Mar03 -symm C1 Running on GPU Traceback (most recent call last): File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py", line 618, in pred = Predictor(args.model, torch.device("cuda:0")) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py", line 217, in init ).to(self.device) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 1152, in to return self._apply(convert) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 802, in _apply module._apply(fn) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 802, in _apply module._apply(fn) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 825, in _apply param_applied = fn(param) File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 1150, in convert return t.to(device, dtype if t.is_floating_point() or t.is_complex() else None, non_blocking) RuntimeError: CUDA error: uncorrectable ECC error encountered CUDA kernel errors might be asynchronously reported at some other API call, so the stacktrace below might be incorrect. For debugging consider passing CUDA_LAUNCH_BLOCKING=1. Compile with TORCH_USE_CUDA_DSA to enable device-side assertions.
TORCH_USE_CUDA_DSA
The text was updated successfully, but these errors were encountered:
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Dear Authors,
Thank you for the wonderful application.
I have tried to run the example like the below and encountered a RuntimeError.
Could please have a look and give me a guide to resolve the error?
Thank you,
Luke
--------------
run_RF2.sh rcsb_pdb_7ZLR.fasta --pair -o 7ZLR
(/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2) [u6062494@grn009:examples]$ ../run_RF2.sh rcsb_pdb_7ZLR.fasta --pair -o 7ZLR
Running HHblits
-> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_1.fa 7ZLR rcsb_pdb_7ZLR_1 8 64
Running HHblits
-> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_2.fa 7ZLR rcsb_pdb_7ZLR_2 8 64
Running HHblits
-> Running command: /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_protein_msa.sh 7ZLR/rcsb_pdb_7ZLR_3.fa 7ZLR rcsb_pdb_7ZLR_3 8 64
Creating merged MSA
-> Running command: python /scratch/general/vast/u6062494/tools/RoseTTAFold2/input_prep/make_paired_MSA_simple.py 7ZLR/rcsb_pdb_7ZLR_1.msa0.a3m 7ZLR/rcsb_pdb_7ZLR_2.msa0.a3m 7ZLR/rcsb_pdb_7ZLR_3.msa0.a3m > 7ZLR/rcsb_pdb_7ZLR_1.rcsb_pdb_7ZLR_2.rcsb_pdb_7ZLR_3.a3m
Running RoseTTAFold2 to predict structures
-> Running command: python /scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py -inputs 7ZLR/rcsb_pdb_7ZLR_1.rcsb_pdb_7ZLR_2.rcsb_pdb_7ZLR_3.a3m -prefix 7ZLR/models/model -model /scratch/general/vast/u6062494/tools/RoseTTAFold2/network/weights/RF2_apr23.pt -db /scratch/general/vast/u6062494/tools/RoseTTAFold2/pdb100_2021Mar03/pdb100_2021Mar03 -symm C1
Running on GPU
Traceback (most recent call last):
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py", line 618, in
pred = Predictor(args.model, torch.device("cuda:0"))
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/network/predict.py", line 217, in init
).to(self.device)
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 1152, in to
return self._apply(convert)
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 802, in _apply
module._apply(fn)
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 802, in _apply
module._apply(fn)
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 825, in _apply
param_applied = fn(param)
File "/scratch/general/vast/u6062494/tools/RoseTTAFold2/RF2/lib/python3.10/site-packages/torch/nn/modules/module.py", line 1150, in convert
return t.to(device, dtype if t.is_floating_point() or t.is_complex() else None, non_blocking)
RuntimeError: CUDA error: uncorrectable ECC error encountered
CUDA kernel errors might be asynchronously reported at some other API call, so the stacktrace below might be incorrect.
For debugging consider passing CUDA_LAUNCH_BLOCKING=1.
Compile with
TORCH_USE_CUDA_DSA
to enable device-side assertions.The text was updated successfully, but these errors were encountered: