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Fix compatibility with Sophus #19

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unusual-thoughts
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fix sophus se3.h include and rotation_matrix Eigen bug

Vikit would not compile with latest versions of Sophus.
The header files changed from *.h to *.hpp
rotation_matrix() is deprecated and produces Eigen matrix errors during compilation

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Fix taken from issue #11

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AlexisTM commented Sep 5, 2017

Working, can be used with the last Sophus release.

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