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Work around glnexus issue #362

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holtgrewe opened this issue Feb 22, 2024 · 0 comments · Fixed by #363
Closed

Work around glnexus issue #362

holtgrewe opened this issue Feb 22, 2024 · 0 comments · Fixed by #363
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enhancement New feature or request

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@holtgrewe
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Is your feature request related to a problem? Please describe.
In #356, we added a script to fix glnexus output for Mehari.
zaeleus/noodles#235 now recommends a fix to our code directly.

Describe the solution you'd like
Apply the fix so we don't need the preprocessing step.

Describe alternatives you've considered
N/A

Additional context
N/A
@holtgrewe holtgrewe added the enhancement New feature or request label Feb 22, 2024
holtgrewe added a commit that referenced this issue Feb 22, 2024
@holtgrewe
fix: work around issue with glnexus #362
f5f1834
@holtgrewe holtgrewe linked a pull request Feb 22, 2024 that will close this issue
fix: work around issue with glnexus #362 #363
Merged
holtgrewe added a commit that referenced this issue Feb 22, 2024
@holtgrewe
fix: work around issue with glnexus #362 (#363)
77afb96
@github-project-automation github-project-automation bot moved this from To triage to Done in Release Planning Feb 22, 2024
@varfish-bot varfish-bot mentioned this issue Feb 22, 2024
Merged
@holtgrewe holtgrewe mentioned this issue Feb 26, 2024
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enhancement New feature or request
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Successfully merging a pull request may close this issue.

fix: work around issue with glnexus #362 varfish-org/mehari
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@holtgrewe