Fixing bug triggered for GRCh38 without chr prefix (#98)

varfish-org · Aug 23, 2023 · f1fcbe3 · f1fcbe3
1 parent 5393f3c
commit f1fcbe3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...e/src/main/java/com/github/bihealth/varfish_annotator/checks/VcfCompatibilityChecker.java b/...e/src/main/java/com/github/bihealth/varfish_annotator/checks/VcfCompatibilityChecker.java
@@ -79,7 +79,7 @@ public GenomeVersion guessGenomeVersion() {
           } else if (seqRecord.getSequenceLength() == CHR1_HG38_LENGTH) {
             return seqRecord.getSequenceName().startsWith("chr")
                 ? GenomeVersion.HG38
-                : GenomeVersion.GRCH37;
+                : GenomeVersion.GRCH38;
           }
         }
       }