diff --git a/download_urls.yml b/download_urls.yml index 1fc9868..75f971b 100644 --- a/download_urls.yml +++ b/download_urls.yml @@ -251,7 +251,7 @@ count: 10000 - url: 'https://ensembl.org/biomart/martservice?query=' -- url: 'https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/json/hgnc_complete_set.json' +- url: 'https://storage.googleapis.com/public-download-files/hgnc/json/json/hgnc_complete_set.json' skip_upstream_check: true # does not work reliably in tests excerpt_strategy: strategy: manual diff --git a/rules/work/genes/hgnc.smk b/rules/work/genes/hgnc.smk index 088f4fa..bb573d7 100644 --- a/rules/work/genes/hgnc.smk +++ b/rules/work/genes/hgnc.smk @@ -14,7 +14,7 @@ rule genes_hgnc_download: # -- Download the HGNC data wget --no-check-certificate \ -O {output.json} \ - https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/json/hgnc_complete_set.json + https://storage.googleapis.com/public-download-files/hgnc/json/json/hgnc_complete_set.json md5sum {output.json} > {output.json_md5} """