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Interesting functionality to test #6

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varunshankar opened this issue Jul 29, 2016 · 1 comment
Open

Interesting functionality to test #6

varunshankar opened this issue Jul 29, 2016 · 1 comment
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@varunshankar @yvanlebras

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@varunshankar
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Interesting functionality to test for example is the use of the pbh5tools tool.
@varunshankar
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pbh5tools is a program dedicated for manipulate new dna sequencing technology file datatype (hdf5) produced by the 4th next generation sequencers called pacbio https://github.com/PacificBiosciences/pbh5tools . This is a good example I think to demonstrate the interest of a go-docker Galaxy tool as this datatype is not usable in Galaxy and no galaxy tools for manipulate this kind of data exist... So we can demonstrate that with a go-docker galaxy tool we can call a pbh5tools script to concert hdf5 file into fastq file who can then be used by classical galaxy tool ("fastQC" then "fastq groomer" for example ) and thus by a normal non - admin user..

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@varunshankar @yvanlebras