jupyterlab-sos and transient-display-data does not yet support the current version of JupyterLab

[melyym]

Hello,

I hope I open this issue in the good way.

I try to work with SoS notebooks on Jupyterlab.
The problem is that it seems that jupyterlab and transient-display-data extensions does not support the actual version of Jupyterlab, and I think this explains why I can't have the dropdown menus on code cells (I have them with the classic Jupyter Notebook).

I can add the message that comes when I try to install the extensions the old way with de jupyter commands. I use mambaforge and mamba.

For transient-display-data extension :

(thesis) C:\WINDOWS\system32>jupyter labextension install transient-display-data
←[33m(Deprecated) Installing extensions with the jupyter labextension install command is now deprecated and will be removed in a future major version of JupyterLab.

Users should manage prebuilt extensions with package managers like pip and conda, and extension authors are encouraged to distribute their extensions as prebuilt packages ←[0m
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:56: UserWarning: An error occurred.
  warnings.warn("An error occurred.")
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:57: UserWarning: ValueError: The extension "transient-display-data" does not yet support the current version of JupyterLab.


Conflicting Dependencies:
JupyterLab                Extension      Package
>=4.0.2 <4.1.0            >=3.4.0 <4.0.0 @jupyterlab/application
>=4.1.2 <4.2.0            >=3.4.0 <4.0.0 @jupyterlab/apputils
>=4.0.2 <4.1.0            >=3.4.0 <4.0.0 @jupyterlab/codeeditor
>=4.0.2 <4.1.0            >=3.4.0 <4.0.0 @jupyterlab/console
>=6.0.2 <6.1.0            >=5.0.1 <6.0.0 @jupyterlab/coreutils
>=4.0.2 <4.1.0            >=3.0.3 <4.0.0 @jupyterlab/filebrowser
>=4.0.2 <4.1.0            >=3.4.0 <4.0.0 @jupyterlab/rendermime
>=7.0.2 <7.1.0            >=6.0.2 <7.0.0 @jupyterlab/services
>=4.0.2 <4.1.0            >=3.4.0 <4.0.0 @jupyterlab/ui-components
>=2.0.0 <3.0.0            >=1.3.3 <2.0.0 @lumino/algorithm
>=2.0.0 <3.0.0            >=1.5.3 <2.0.0 @lumino/coreutils
>=2.0.0 <3.0.0            >=1.4.3 <2.0.0 @lumino/disposable
>=2.0.0 <3.0.0            >=1.7.1 <2.0.0 @lumino/dragdrop
>=2.0.0 <3.0.0            >=1.4.3 <2.0.0 @lumino/messaging
>=2.0.0 <3.0.0            >=1.4.3 <2.0.0 @lumino/signaling
>=2.0.1 <3.0.0            >=1.16.1 <2.0.0@lumino/widgets
  warnings.warn(msg[-1].strip())
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:58: UserWarning: See the log file for details: C:\Users\melan\AppData\Local\Temp\jupyterlab-debug-mqizwi8h.log
  warnings.warn(f"See the log file for details: {log_path!s}")

For jupyterlab-sos extension :

(thesis) C:\WINDOWS\system32>jupyter labextension install jupyterlab-sos
←[33m(Deprecated) Installing extensions with the jupyter labextension install command is now deprecated and will be removed in a future major version of JupyterLab.

Users should manage prebuilt extensions with package managers like pip and conda, and extension authors are encouraged to distribute their extensions as prebuilt packages ←[0m
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:56: UserWarning: An error occurred.
  warnings.warn("An error occurred.")
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:57: UserWarning: ValueError: The extension "jupyterlab-sos" does not yet support the current version of JupyterLab.


Conflicting Dependencies:
JupyterLab              Extension      Package
>=4.0.2 <4.1.0          >=3.0.2 <4.0.0 @jupyterlab/application
>=4.1.2 <4.2.0          >=3.0.2 <4.0.0 @jupyterlab/apputils
>=4.0.2 <4.1.0          >=3.0.2 <4.0.0 @jupyterlab/codemirror
>=4.0.2 <4.1.0          >=3.0.2 <4.0.0 @jupyterlab/console
>=4.0.2 <4.1.0          >=3.0.2 <4.0.0 @jupyterlab/notebook
>=7.0.2 <7.1.0          >=6.0.2 <7.0.0 @jupyterlab/services
>=2.0.0 <3.0.0          >=1.3.3 <2.0.0 @lumino/algorithm
>=2.0.1 <3.0.0          >=1.12.0 <2.0.0@lumino/commands
>=2.0.0 <3.0.0          >=1.4.3 <2.0.0 @lumino/disposable
  warnings.warn(msg[-1].strip())
C:\Users\melan\mambaforge\envs\thesis\Lib\site-packages\jupyterlab\debuglog.py:58: UserWarning: See the log file for details: C:\Users\melan\AppData\Local\Temp\jupyterlab-debug-_dhyco1t.log
  warnings.warn(f"See the log file for details: {log_path!s}")

I'm new to Python (well pretty new we can say) and I'm trying to make this work for days now, maybe I'll try returning on a basic Python / pip installation but I don't think it will change anything, maybe it will be worse in fact ...

Thank you in advance !

[BoPeng]

What is your version of JupyterLab? I think the problem is that jupyterlab-sos currently depends on version 3.4.0 version of the API

https://github.com/vatlab/jupyterlab-sos/blob/498aaa3d39d1a16e468226b1f98a6fbde3c34ce8/package.json#L50C34-L52

[BoPeng]

jupyterlab 4.0.0 was released a month ago so this is why we have not been able to catch up. Before we formally support this version, you can try to use a JupyterLab 3.x.x since extensions are unlikely supporting this latest version now.

[melyym]

Hello,

Thank you for your response, and sorry for asking simple questions.

Ok my jupyterlab version is this ;

jupyter-lsp               2.2.0              pyhd8ed1ab_0    conda-forge
jupyter_client            8.2.0              pyhd8ed1ab_0    conda-forge
jupyter_core              5.3.1           py311h1ea47a8_0    conda-forge
jupyter_events            0.6.3              pyhd8ed1ab_0    conda-forge
jupyter_server            2.6.0              pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.4.4              pyhd8ed1ab_1    conda-forge
jupyterlab                4.0.2              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.23.0             pyhd8ed1ab_0    conda-forge

Yes I knew that it was a timeline problem and I understand.
So I'll try using simple Jupyter Notebook or ancient version of Jupyterlab see if it works.

I come back tomorrow with the result thank you again.

[BoPeng]

Let me see if JupyterLab 4 has incompatible API change for jupyterlab-sos.

[BoPeng]

Unfortunately there are incompatible API changes so this is not a done-after-changing-version-number issue. That means the bug will likely take much longer to fix given my tight schedule nowadays.

[melyym]

Ok I see ! No problem.
Thank you very much for looking into it, and thank you for the work done so far, it will help me a lot.

[BoPeng]

I will keep the ticket open as a reminder for updating jupyterlab-sos.

[BoPeng]

was stuck for hours at setting up the environment: jupyterlab/jupyterlab#15107

[BoPeng]

transient-display-data 0.4.4 and jupyterlab-sos 0.10.0 are released to support JupyterLab 4.x. However, this release uses Python syntax highlighting for all cells and lacks support for sos-specific syntax highlighting.

The reason for this missing feature is that JLab4.x only supports CodeMirror 6, which was completely rewritten from CodeMirror5 and has a brand new way of writing language modules. I will rewrite the language module for CM6 but it can take weeks. I therefore decided to release jupyterlab-sos 0.10.0 without this feature.

Please feel to test, or wait for jupyterlab-sos 0.10.1 with proper syntax highlighting.