R-ArrayExpress.spec

%global packname  ArrayExpress
%global rlibdir  %{_datadir}/R/library


Name:             R-%{packname}
Version:          1.12.0
Release:          2%{?dist}
Summary:          Access the arrayexpress microarray database at ebi and b

Group:            Applications/Engineering 
License:          Artistic-2.0
URL:              http://bioconductor.org/packages/release/bioc/html/ArrayExpress.html
Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch:        noarch
Requires:         R-core

Requires:         R >= 2.9.0 R-Biobase >= 2.4.0 R-affy R-limma

BuildRequires:    R-devel tex(latex) R >= 2.9.0 R-Biobase >= 2.4.0 R-XML R-affy R-limma 

%description
Access the ArrayExpress Repository at EBI and build Bioconductor data
structures: ExpressionSet, AffyBatch, NChannelSet

%prep
%setup -q -c -n %{packname}

%build

%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%files
%defattr(-, root, root, -)
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/html
%doc %{rlibdir}/%{packname}/DESCRIPTION
%doc %{rlibdir}/%{packname}/CITATION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/help


%changelog
* Wed Jun 15 2011 Adam Huffman <bloch@verdurin.com> - 1.12.0-2
- add reqs for limma and affy

* Wed Apr 20 2011 Adam Huffman <bloch@verdurin.com> 1.12.0-1
- initial package for Fedora