Skip to content

Issues: vgteam/libbdsg

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 23 Closed
24 Open 23 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

upgrade libbdsg version from pip installation
#203 opened Aug 26, 2024 by Plogeur
1
Build fails on Ubuntu 24
#197 opened May 29, 2024 by rlorigro
When I use python bdsg to deal with a packedgraph, I found a question.
#194 opened Dec 23, 2023 by pioneer-pi
3
Docs don't seem to properly list C++ methods anymore
#161 opened Aug 22, 2022 by adamnovak
Docs/Python bindings broke because of SnarlDistanceIndex
#160 opened Aug 22, 2022 by adamnovak
@xchang1
1
Overlays don't work well with haplotype paths
#158 opened May 11, 2022 by adamnovak
Overlays don't expose path metadata methods
#157 opened May 11, 2022 by adamnovak
Building a big bdsg::yomo::UniqueMappedPointer<bdsg::MappedIntVector> and *then* saving it causes total chain size reported by get_usage() to increase
#132 opened Nov 15, 2021 by adamnovak
Add low level methods for handle graphs enhancement New feature or request
#129 opened Oct 4, 2021 by rlorigro
2
BUILD_STATIC flag not working
#123 opened Sep 3, 2021 by rlorigro
Graph implementations in libbdsg use copy constructors instead of move during vector reallocations
#118 opened Aug 21, 2021 by jeizenga
How to extract most likely position of series of nodes
#104 opened Mar 25, 2021 by RenzoTale88
5
Deprecate libbdsg odgi
#102 opened Mar 15, 2021 by adamnovak
@adamnovak
Example of using bdsg.bdsg.PositionOverlay
#93 opened Jan 19, 2021 by RenzoTale88
1
We should be able to install via pip without checking the python3 on the PATH
#82 opened Oct 1, 2020 by adamnovak
Needs to be able to read GFA by itself
#79 opened Sep 25, 2020 by adamnovak
1
reinterpret_cast should maybe be static_cast
#76 opened Aug 24, 2020 by adamnovak
1
Too hard to use as an ExternalProject
#73 opened Jul 8, 2020 by adamnovak
1
missing Python.h on system where it is present
#65 opened Apr 26, 2020 by ekg
1
Resizing factor bug in PackedGraph
#46 opened Mar 16, 2020 by jeizenga
Deleting steps while looping through the steps on a node
#35 opened Dec 11, 2019 by adamnovak
Looks for DYNAMIC in the wrong(?) place
#23 opened Sep 12, 2019 by adamnovak
1
Let's get Travis running the unit tests
#21 opened Sep 6, 2019 by glennhickey
The ODGI graph does not pass the handle graph tests ported over from VG
#19 opened Aug 24, 2019 by jeizenga
9
ProTip! Find all open issues with in progress development work with linked:pr.