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Scripts needed to generate occupancy models from different types of biological and spatial data

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ebv_occurrence_area

Block 2 of project "BON-in-a Box 2.0: Working towards an integrated biodiversity information system" seeks to enable access to integrated biodiversity data to estimate indicators required to empower rapid trend detection. This repository will contain all the code files necessary to calculate new Essential Biodiversity Variable - Occurrence Area (EBV-OA) using occupancy models, based on eBird data for birds and camera trapping data for mammals in Colombia. Currently we will start uploading scripts form other sources to start adapting them for this project and therefore filling out the rest of this file.

Prerequisites

[WIP]

How to run

[WIP]

Authors and contact

WILL BE UPDATED ONCE WE START

See also the list of contributors who participated in this project. - WILL BE UPDATED ONCE WE START

License

This project is licensed under the MIT License - see the LICENSE.md file for details.

Acknowledgments

  • Project "BON-in-a Box 2.0: Working towards an integrated biodiversity information system" is funded by Microsoft and implemented in Quebec by THE QUEBEC CENTRE FOR BIODIVERSITY SCIENCE and in Colombia by Instituto de Investigación de Recursos Biológicos Alexander von Humboldt.
  • OA-M1a (Biological data processing for occupancy models from eBird data) was adapted from...
  • OA-M1b (Biological data processing for occupancy models from camera trap data) was adapted from...
  • OA-M2 (Neutral occupancy models from detection/non-detecion matrix) was adapted from...
  • OA-M3 (Environmental data processing from spatial layers) was adapted from...
  • OA-M4 (Neutral occupancy models from outpus of M1 and M3) was adapted from...

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