_config.yml

# Site Settings
locale                   : "en-UK"
title                    : "vios.science"
title_separator          : "-"
name                     : &name "VIOS Collaboratory"
description              : &description "Machine Learning, Deep Learning, Medical Image Analysis"
url                      : https://vios.science
#url                      : http://localhost:4000
baseurl                  : ""
future                   : true

# Reading Files
include:
  - .htaccess
  - _pages
  - pdfs
exclude:
  - "*.sublime-project"
  - "*.sublime-workspace"
  - .asset-cache
  - .bundle
  - .idea
  - .jekyll-assets-cache
  - .sass-cache
  - CHANGELOG
  - Capfile
  - Gemfile
  - Gruntfile.js
  - LICENSE
  - README
  - Rakefile
  - assets/js/_main.js
  - assets/js/plugins
  - assets/js/vendor
  - config
  - gulpfile.js
  - log
  - node_modules
  - package.json
  - tmp
  - vendor
keep_files:
  - .git
  - .svn
encoding: "utf-8"
markdown_ext: "markdown,mkdown,mkdn,mkd,md"

# Conversion
markdown: kramdown
highlighter: rouge
lsi: false
excerpt_separator: "\n\n"
incremental: false

# Markdown Processing
kramdown:
  input: GFM
  hard_wrap: false
  auto_ids: true
  footnote_nr: 1
  entity_output: as_char
  toc_levels: 1..6
  smart_quotes: lsquo,rsquo,ldquo,rdquo
  enable_coderay: false

# Collections.
collections:
  projects:
    output: true
    permalink: /:collection/:path/
  publications:
    output: true
    permalink: /:collection/:path/
  team:
    output: true
    permalink: /:collection/:path/
  tutorials:
    output: true
    permalink: /:collection/:path/

# Defaults.
defaults:
  # _posts
  - scope:
      path: ""
      type: posts
    values:
      layout: single
      related: true
      sidebar:
        nav: news
  # _pages
  - scope:
      path: ""
      type: pages
    values:
      layout: single
  # _portfolio
  - scope:
      path: ""
      type: portfolio
    values:
      layout: single
  # _talks
  - scope:
      path: ""
      type: talks
    values:
      layout: talk
  # _projects
  - scope:
      path: ""
      type: projects
    values:
      layout: single
      sidebar:
        nav: research
  # _team
  - scope:
      path: ""
      type: team
    values:
      layout: profile
      sidebar:
        nav: members
  # _tutorials
  - scope:
      path: ""
      type: tutorials
    values:
      layout: single

# Sass/SCSS
sass:
  sass_dir: _sass
  style: compressed

# Outputting
permalink: /:categories/:title/
# paginate: 5 # amount of posts to show
# paginate_path: /page:num/
timezone: Europe/London

# Plugins
plugins:
  - jekyll-paginate
  - jekyll-sitemap
  - jekyll-gist
  - jekyll-feed
  - jekyll-redirect-from

# mimic GitHub Pages with --safe
whitelist:
  - jekyll-paginate
  - jekyll-sitemap
  - jekyll-gist
  - jekyll-feed
  - jemoji

# Archives
category_archive:
  type: liquid
  path: /categories/
tag_archive:
  type: liquid
  path: /tags/

# HTML Compression
compress_html:
  clippings: all
  ignore:
    envs: development