From 94a9880cc9c3a4b89bb9abe9e6eb5832cac5e005 Mon Sep 17 00:00:00 2001 From: Kilian Salomon Date: Mon, 28 Oct 2024 13:50:03 +0100 Subject: [PATCH] fix: remove default channel from conda envs --- workflow/envs/deepexplain_gpu.yml | 1 - workflow/envs/deeplift_gpu.yml | 1 - workflow/envs/default.yml | 1 - workflow/envs/legnet.yml | 1 - workflow/envs/negative_training_sampler.yml | 1 - workflow/envs/plot_ism_regions.yaml | 1 - workflow/envs/plot_satmut.yaml | 1 - workflow/envs/plot_satmut_regions.yaml | 1 - workflow/envs/samtools.yaml | 1 - workflow/envs/tensorflow.yml | 1 - workflow/envs/tfmodisco-lite.yml | 1 - workflow/envs/tfmodisco.yml | 1 - 12 files changed, 12 deletions(-) diff --git a/workflow/envs/deepexplain_gpu.yml b/workflow/envs/deepexplain_gpu.yml index bc46536..713eecc 100644 --- a/workflow/envs/deepexplain_gpu.yml +++ b/workflow/envs/deepexplain_gpu.yml @@ -1,7 +1,6 @@ channels: - conda-forge - bioconda - - defaults channel_priority: true dependencies: - python diff --git a/workflow/envs/deeplift_gpu.yml b/workflow/envs/deeplift_gpu.yml index 5ab977f..3651a40 100644 --- a/workflow/envs/deeplift_gpu.yml +++ b/workflow/envs/deeplift_gpu.yml @@ -1,7 +1,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - kipoi diff --git a/workflow/envs/default.yml b/workflow/envs/default.yml index 2540237..68ee0cd 100644 --- a/workflow/envs/default.yml +++ b/workflow/envs/default.yml @@ -3,7 +3,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - bc - click diff --git a/workflow/envs/legnet.yml b/workflow/envs/legnet.yml index dda0f96..af3390f 100644 --- a/workflow/envs/legnet.yml +++ b/workflow/envs/legnet.yml @@ -3,7 +3,6 @@ name: legnet channels: - conda-forge - bioconda - - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_kmp_llvm diff --git a/workflow/envs/negative_training_sampler.yml b/workflow/envs/negative_training_sampler.yml index a27411a..06c12fa 100644 --- a/workflow/envs/negative_training_sampler.yml +++ b/workflow/envs/negative_training_sampler.yml @@ -3,6 +3,5 @@ channels: - conda-forge - bioconda - - defaults dependencies: - negative_training_sampler diff --git a/workflow/envs/plot_ism_regions.yaml b/workflow/envs/plot_ism_regions.yaml index 11dc806..0a679bb 100644 --- a/workflow/envs/plot_ism_regions.yaml +++ b/workflow/envs/plot_ism_regions.yaml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - h5py diff --git a/workflow/envs/plot_satmut.yaml b/workflow/envs/plot_satmut.yaml index a7f719e..6b73048 100644 --- a/workflow/envs/plot_satmut.yaml +++ b/workflow/envs/plot_satmut.yaml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - r-tidyverse - r-optparse diff --git a/workflow/envs/plot_satmut_regions.yaml b/workflow/envs/plot_satmut_regions.yaml index 70154fe..3a884f1 100644 --- a/workflow/envs/plot_satmut_regions.yaml +++ b/workflow/envs/plot_satmut_regions.yaml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - h5py diff --git a/workflow/envs/samtools.yaml b/workflow/envs/samtools.yaml index 0e6a31e..c045f12 100644 --- a/workflow/envs/samtools.yaml +++ b/workflow/envs/samtools.yaml @@ -3,7 +3,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - samtools - bedtools diff --git a/workflow/envs/tensorflow.yml b/workflow/envs/tensorflow.yml index 66f570b..4aa3dbc 100644 --- a/workflow/envs/tensorflow.yml +++ b/workflow/envs/tensorflow.yml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - kipoi diff --git a/workflow/envs/tfmodisco-lite.yml b/workflow/envs/tfmodisco-lite.yml index 153b66c..930dd8f 100644 --- a/workflow/envs/tfmodisco-lite.yml +++ b/workflow/envs/tfmodisco-lite.yml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - h5py diff --git a/workflow/envs/tfmodisco.yml b/workflow/envs/tfmodisco.yml index c684321..34c2420 100644 --- a/workflow/envs/tfmodisco.yml +++ b/workflow/envs/tfmodisco.yml @@ -2,7 +2,6 @@ channels: - conda-forge - bioconda - - defaults dependencies: - click - h5py