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Copy pathHSFP_signal.m
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HSFP_signal.m
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function [dict,lookup,jac] = HSFP_signal(lookup_grid,theta,B1s,TR,limits)
%crop to relevant pairs
T1min=limits(1);
T1max=limits(2);
T2min=limits(3);
T2max=limits(4);
lookup_grid(lookup_grid(:,1)<T1min,:)=[];
lookup_grid(lookup_grid(:,1)>T1max,:)=[];
lookup_grid(lookup_grid(:,2)<T2min,:)=[];
lookup_grid(lookup_grid(:,2)>T2max,:)=[];
lookup_grid(lookup_grid(:,1)<lookup_grid(:,2),:)=[];
NB1s=numel(B1s);
Ngridpts=size(lookup_grid,1);
Npulses=numel(theta);
dict=zeros(Ngridpts,Npulses);
jac=zeros(Ngridpts,Npulses,2);
for iGrid = 1:Ngridpts
T1=lookup_grid(iGrid,1);
T2=lookup_grid(iGrid,2);
T_grads=9.6E-3;
InvEff=0.95;
bc=1-(1+InvEff)*exp(-T_grads/T1);
Mxy_t_avg=0;
DF_avg=0;
for iB1=1:NB1s
B1=B1s(iB1);
[Mxy_t,t,DF] = computeDynamics(T1,T2,TR,bc,B1*theta);
Mxy_t_avg=Mxy_t_avg+Mxy_t/NB1s;
DF_avg=DF_avg+DF/NB1s;
end
dict(iGrid,:)=Mxy_t_avg;
jac(iGrid,:,:)=DF_avg(:,2:3);%only T1 and T2
end
lookup=lookup_grid;
end