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Move netwok interception to new model #6

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Move netwok interception to new model #6

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@vparrac vparrac commented Dec 10, 2023

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vparrac added 30 commits August 18, 2020 23:05
@vparrac
Update the name of the respository. Package of visualization created …
81eccc6 
…and processing library added
@vparrac
Update the visualization
4ebecca
@vparrac
Processing listo para moverse. Falta corregir para que solo corra el …
29dbfa3 
…offset
@vparrac
Corregido error offset
e7d1a74
@vparrac
Adding documentation to MySketch class
6844f0f
@vparrac
Bug fixed
12e6b86
@vparrac
Holi...
6ed0e9f
@vparrac
Adding arrows.. Remove Stroke to allo the arrows
f2532f9
@vparrac
Chage to classes
bfd1d5d
@vparrac
Net not directed
0f13b0f
@vparrac
Connected components implemented without tested
7cd86e2
@vparrac
Connected component-- Tested. Pending out file
2d37806
@vparrac
Lberias
c6c475c
@vparrac
Pasandome a Java 11 y comensando la intersección entre los ciruclos
2eaad5a
@vparrac
Implementando flechas de transiciones a ejes
0477f05
@vparrac
Volviendo la parte de flechas más comprensible
fedaafe
@vparrac
Flechas cuadrados
65d3e92
@vparrac
Añadiendo pesos a los ejes de la red de Petri en la visualización y c…
ebbb558 
…ambie el código de drway para que fuera más legible. Los colores estaban apuntando a las variables estaticas y no a los atributos de los nodos, esto también se corrigió
@vparrac
Sacando la clase que da la prioridad a las reacciones
bba31f9
@vparrac
Implementación completa de obtener los metabolitos en común de dos re…
ece4a5d 
…des metabólicas
@vparrac
Obteniendo las reacciones en común entre dos redes metabólicas comple…
f9eb600 
…to, pendiente escribir el archivo
@vparrac
Imprimiendo getCommonReactions
22e19a3
@vparrac
Imprimiento a un archivo JSON el método getCOmmonReactions
56fa10f
@vparrac
Cambiando connected components para que retorne un mapa
51a82c8
@vparrac
Acabando de imprimir connected components
2cbe369
@vparrac
Cambiando y corrigiendo la red de Petri. La red de petri estaba apunt…
50cbe4e 
…ando a los componentes del modelo, ahora quedo completamente separada
@vparrac
Quitando el generico de la clase enzymas (no es necesario porque la t…
3dbdd8a 
…ransición guarda toda la reacción)
@vparrac
Creando un segundo grafo asociado a los integer para que la traducciò…
7c41c65 
…n posteriormente sea màs fàcil
@vparrac
Cambios para empatar con el otro proceso de Processing
ff71cd5
@vparrac
Colocando las clases de processing para subir al respositorio. En el …
bf79ebd 
…repositorio original corre bien, aquí falta configurar el run
vparrac and others added 30 commits June 4, 2021 16:33
@vparrac
Update README.md
e8509bf
@vparrac @jquinterog
Add gapfill
7891b49
@vparrac
New Petri net model
94a1bf8
@jquinterog
New metapenta model
4eb6e9d
@jquinterog
Fix errors in describe errors
30fd894
@vparrac
Merge pull request #1 from FLAGlab/gapFIll
6880628 
Describe net refactor
@jquinterog
Add phaseolus model
d479ffc
@vparrac
Add maven to repository, remove UI Processing and implement FBA draft
2c2a94e
@vparrac
Merge pull request #4 from FLAGlab/FBA-implementation
7e3f425 
Add maven to repository, remove UI Processing and implement FBA draft
@vparrac
feat(maven-release): add maven release actio
ab99d96
@vparrac
Merge pull request #5 from FLAGlab/add-maven-release-action
11a3f5c 
feat(maven-release): add maven release action
@vparrac
fix(github-packages): add github packages to pom
c52fa73
@vparrac
Merge pull request #6 from FLAGlab/add-github-packages-distribution-i…
596edb7 
…n-pm

fix(github-packages): add github packages to pom
@vparrac
fix(github-packages): fix artifact id
f1fa5db
@vparrac
Merge pull request #7 from FLAGlab/fix-artifact-id
c5ee26b 
fix(github-packages): fix artifact id
@vparrac
fix(github-packages): update groupid and distribution managment
2a5cbcc
@vparrac
fix(connected-components): move connected component to new model
8755d13
@vparrac
move connected components to new model
5267595
@vparrac
Merge pull request #8 from FLAGlab/move-connected-component-to-new-model
561cb66 
fix(connected-components): move connected component to new model
@vparrac
Move sinks and sources to new model
3e49a52
@vparrac
Merge pull request #9 from FLAGlab/move-sinks-source-to-new-model
b16cefc 
Move sinks and sources to new model
@vparrac
Move reactions catalyzed by to new model
2c67a1c
@vparrac
Merge pull request #10 from FLAGlab/move-reactios-catalyzed-bt
7665a7f 
Move reactions catalyzed by to new model
@vparrac
Add Metabolite reaction to new model
10ea406
@vparrac
Merge pull request #11 from FLAGlab/add-reactions-of-metabolite
8e3a153 
Add Metabolite reaction to new model
@vparrac
fix(move-loader): move loader to io classes
e3dced0
@vparrac
Merge pull request #12 from FLAGlab/move-to-io-writer
87be905 
fix(move-loader): move loader to io classes
@vparrac
Move DescribeNetworkWriter to new model
5cd7c72
@vparrac
Merge pull request #13 from FLAGlab/move-describe-network-to-new-model
ee636a4 
Move DescribeNetworkWriter to new model
@vparrac
Move network interceptions to new model
5b7cbcc
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@vparrac @jquinterog