diff --git a/README.md b/README.md index f47b2eaf..e116f93e 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,7 @@ Exercism Workspace | August | Apps | Dart (5/5), Java (0/5), Kotlin (0/5) | | September | Slimline | Awk (5/5), Bash\* (5/5), jq (0/5), Perl (0/5) | | October | Object-Oriented | Ruby (5/5), Java (0/5) | -| November | Nibbly | WebAssembly (2/5), x86-64 Assembly (0/5) | +| November | Nibbly | WebAssembly (3/5), x86-64 Assembly (0/5) | | December | Diversions | | \* not completed in 2023 diff --git a/wasm/README.md b/wasm/README.md index 2ce7ca19..5622b801 100644 --- a/wasm/README.md +++ b/wasm/README.md @@ -18,3 +18,4 @@ - [reverse-string](./reverse-string/README.md) - [grains](./grains/README.md) - [resistor-color](./resistor-color/README.md) +- [nucleotide-count](./nucleotide-count/README.md) diff --git a/wasm/nucleotide-count/.prettierignore b/wasm/nucleotide-count/.prettierignore new file mode 120000 index 00000000..d00c28f0 --- /dev/null +++ b/wasm/nucleotide-count/.prettierignore @@ -0,0 +1 @@ +../.prettierignore \ No newline at end of file diff --git a/wasm/nucleotide-count/README.md b/wasm/nucleotide-count/README.md index f9e0133c..11456421 100644 --- a/wasm/nucleotide-count/README.md +++ b/wasm/nucleotide-count/README.md @@ -41,4 +41,9 @@ The result should be returned as a 4-way tuple: `(i32 i32 i32 i32)`. Each number ### Based on -The Calculating DNA Nucleotides_problem at Rosalind - http://rosalind.info/problems/dna/ \ No newline at end of file +The Calculating DNA Nucleotides_problem at Rosalind - http://rosalind.info/problems/dna/ + +### My Solution + +- [my solution]() +- [run-tests](./run-tests-wasm.txt) diff --git a/wasm/nucleotide-count/babel.config.js b/wasm/nucleotide-count/babel.config.js index 9c17ba51..868a4948 100644 --- a/wasm/nucleotide-count/babel.config.js +++ b/wasm/nucleotide-count/babel.config.js @@ -1,4 +1,4 @@ export default { - presets: ["@exercism/babel-preset-javascript"], - plugins: [], -}; + presets: ["@exercism/babel-preset-javascript"], + plugins: [], +}; \ No newline at end of file diff --git a/wasm/nucleotide-count/coverage/clover.xml b/wasm/nucleotide-count/coverage/clover.xml new file mode 100644 index 00000000..bf151a9c --- /dev/null +++ b/wasm/nucleotide-count/coverage/clover.xml @@ -0,0 +1,6 @@ + + + + + + diff --git a/wasm/nucleotide-count/coverage/coverage-final.json b/wasm/nucleotide-count/coverage/coverage-final.json new file mode 100644 index 00000000..0967ef42 --- /dev/null +++ b/wasm/nucleotide-count/coverage/coverage-final.json @@ -0,0 +1 @@ +{} diff --git a/wasm/nucleotide-count/coverage/lcov-report/base.css b/wasm/nucleotide-count/coverage/lcov-report/base.css new file mode 100644 index 00000000..f418035b --- /dev/null +++ b/wasm/nucleotide-count/coverage/lcov-report/base.css @@ -0,0 +1,224 @@ +body, html { + margin:0; 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a/wasm/nucleotide-count/coverage/lcov-report/sort-arrow-sprite.png b/wasm/nucleotide-count/coverage/lcov-report/sort-arrow-sprite.png new file mode 100644 index 00000000..6ed68316 Binary files /dev/null and b/wasm/nucleotide-count/coverage/lcov-report/sort-arrow-sprite.png differ diff --git a/wasm/nucleotide-count/coverage/lcov-report/sorter.js b/wasm/nucleotide-count/coverage/lcov-report/sorter.js new file mode 100644 index 00000000..2bb296a8 --- /dev/null +++ b/wasm/nucleotide-count/coverage/lcov-report/sorter.js @@ -0,0 +1,196 @@ +/* eslint-disable */ +var addSorting = (function() { + 'use strict'; + var cols, + currentSort = { + index: 0, + desc: false + }; + + // returns the summary table element + function getTable() { + return document.querySelector('.coverage-summary'); + } + // returns the thead element of the summary table + function getTableHeader() { + return getTable().querySelector('thead tr'); + } + // returns the tbody element of the summary table + function getTableBody() { + return getTable().querySelector('tbody'); + } + // returns the th element for nth column + function getNthColumn(n) { + return getTableHeader().querySelectorAll('th')[n]; + } + + function onFilterInput() { + const searchValue = document.getElementById('fileSearch').value; + const rows = document.getElementsByTagName('tbody')[0].children; + for (let i = 0; i < rows.length; i++) { + const row = rows[i]; + if ( + row.textContent + .toLowerCase() + .includes(searchValue.toLowerCase()) + ) { + row.style.display = ''; + } else { + row.style.display = 'none'; + } + } + } + + // loads the search box + function addSearchBox() { + var template = document.getElementById('filterTemplate'); + var templateClone = template.content.cloneNode(true); + templateClone.getElementById('fileSearch').oninput = onFilterInput; + template.parentElement.appendChild(templateClone); + } + + // loads all columns + function loadColumns() { + var colNodes = getTableHeader().querySelectorAll('th'), + colNode, + cols = [], + col, + i; + + for (i = 0; i < colNodes.length; i += 1) { + colNode = colNodes[i]; + col = { + key: colNode.getAttribute('data-col'), + sortable: !colNode.getAttribute('data-nosort'), + type: colNode.getAttribute('data-type') || 'string' + }; + cols.push(col); + if (col.sortable) { + col.defaultDescSort = col.type === 'number'; + colNode.innerHTML = + colNode.innerHTML + ''; + } + } + return cols; + } + // attaches a data attribute to every tr element with an object + // of data values keyed by column name + function loadRowData(tableRow) { + var tableCols = tableRow.querySelectorAll('td'), + colNode, + col, + data = {}, + i, + val; + for (i = 0; i < tableCols.length; i += 1) { + colNode = tableCols[i]; + col = cols[i]; + val = colNode.getAttribute('data-value'); + if (col.type === 'number') { + val = Number(val); + } + data[col.key] = val; + } + return data; + } + // loads all row data + function loadData() { + var rows = getTableBody().querySelectorAll('tr'), + i; + + for (i = 0; i < rows.length; i += 1) { + rows[i].data = loadRowData(rows[i]); + } + } + // sorts the table using the data for the ith column + function sortByIndex(index, desc) { + var key = cols[index].key, + sorter = function(a, b) { + a = a.data[key]; + b = b.data[key]; + return a < b ? -1 : a > b ? 1 : 0; + }, + finalSorter = sorter, + tableBody = document.querySelector('.coverage-summary tbody'), + rowNodes = tableBody.querySelectorAll('tr'), + rows = [], + i; + + if (desc) { + finalSorter = function(a, b) { + return -1 * sorter(a, b); + }; + } + + for (i = 0; i < rowNodes.length; i += 1) { + rows.push(rowNodes[i]); + tableBody.removeChild(rowNodes[i]); + } + + rows.sort(finalSorter); + + for (i = 0; i < rows.length; i += 1) { + tableBody.appendChild(rows[i]); + } + } + // removes sort indicators for current column being sorted + function removeSortIndicators() { + var col = getNthColumn(currentSort.index), + cls = col.className; + + cls = cls.replace(/ sorted$/, '').replace(/ sorted-desc$/, ''); + col.className = cls; + } + // adds sort indicators for current column being sorted + function addSortIndicators() { + getNthColumn(currentSort.index).className += currentSort.desc + ? ' sorted-desc' + : ' sorted'; + } + // adds event listeners for all sorter widgets + function enableUI() { + var i, + el, + ithSorter = function ithSorter(i) { + var col = cols[i]; + + return function() { + var desc = col.defaultDescSort; + + if (currentSort.index === i) { + desc = !currentSort.desc; + } + sortByIndex(i, desc); + removeSortIndicators(); + currentSort.index = i; + currentSort.desc = desc; + addSortIndicators(); + }; + }; + for (i = 0; i < cols.length; i += 1) { + if (cols[i].sortable) { + // add the click event handler on the th so users + // dont have to click on those tiny arrows + el = getNthColumn(i).querySelector('.sorter').parentElement; + if (el.addEventListener) { + el.addEventListener('click', ithSorter(i)); + } else { + el.attachEvent('onclick', ithSorter(i)); + } + } + } + } + // adds sorting functionality to the UI + return function() { + if (!getTable()) { + return; + } + cols = loadColumns(); + loadData(); + addSearchBox(); + addSortIndicators(); + enableUI(); + }; +})(); + +window.addEventListener('load', addSorting); diff --git a/wasm/nucleotide-count/coverage/lcov.info b/wasm/nucleotide-count/coverage/lcov.info new file mode 100644 index 00000000..e69de29b diff --git a/wasm/nucleotide-count/nucleotide-count.spec.js b/wasm/nucleotide-count/nucleotide-count.spec.js index 4ed81b66..29ac30f8 100644 --- a/wasm/nucleotide-count/nucleotide-count.spec.js +++ b/wasm/nucleotide-count/nucleotide-count.spec.js @@ -1,75 +1,80 @@ -import { compileWat, WasmRunner } from "@exercism/wasm-lib"; +import { + compileWat, + WasmRunner +} from "@exercism/wasm-lib"; let wasmModule; let currentInstance; beforeAll(async () => { - try { - const watPath = new URL("./nucleotide-count.wat", import.meta.url); - const { buffer } = await compileWat(watPath); - wasmModule = await WebAssembly.compile(buffer); - } catch (err) { - console.log(`Error compiling *.wat: ${err}`); - process.exit(1); - } + try { + const watPath = new URL("./nucleotide-count.wat", import.meta.url); + const { + buffer + } = await compileWat(watPath); + wasmModule = await WebAssembly.compile(buffer); + } catch (err) { + console.log(`Error compiling *.wat: ${err}`); + process.exit(1); + } }); function countNucleotides(input) { - const inputBufferOffset = 64; - const inputBufferCapacity = 256; + const inputBufferOffset = 64; + const inputBufferCapacity = 256; - const inputLengthEncoded = new TextEncoder().encode(input).length; - if (inputLengthEncoded > inputBufferCapacity) { - throw new Error( - `String is too large for buffer of size ${inputBufferCapacity} bytes` - ); - } + const inputLengthEncoded = new TextEncoder().encode(input).length; + if (inputLengthEncoded > inputBufferCapacity) { + throw new Error( + `String is too large for buffer of size ${inputBufferCapacity} bytes` + ); + } - currentInstance.set_mem_as_utf8(inputBufferOffset, inputLengthEncoded, input); + currentInstance.set_mem_as_utf8(inputBufferOffset, inputLengthEncoded, input); - // Pass offset and length to WebAssembly function - return currentInstance.exports.countNucleotides( - inputBufferOffset, - input.length - ); + // Pass offset and length to WebAssembly function + return currentInstance.exports.countNucleotides( + inputBufferOffset, + input.length + ); } describe("count all nucleotides in a strand", () => { - beforeEach(async () => { - currentInstance = null; - if (!wasmModule) { - return Promise.reject(); - } - try { - currentInstance = await new WasmRunner(wasmModule); - return Promise.resolve(); - } catch (err) { - console.log(`Error instantiating WebAssembly module: ${err}`); - return Promise.reject(); - } - }); + beforeEach(async () => { + currentInstance = null; + if (!wasmModule) { + return Promise.reject(); + } + try { + currentInstance = await new WasmRunner(wasmModule); + return Promise.resolve(); + } catch (err) { + console.log(`Error instantiating WebAssembly module: ${err}`); + return Promise.reject(); + } + }); - test("empty strand", () => { - expect(countNucleotides("")).toEqual([0, 0, 0, 0]); - }); + test("empty strand", () => { + expect(countNucleotides("")).toEqual([0, 0, 0, 0]); + }); - test("can count one nucleotide in single-character input", () => { - expect(countNucleotides("G")).toEqual([0, 0, 1, 0]); - }); + test("can count one nucleotide in single-character input", () => { + expect(countNucleotides("G")).toEqual([0, 0, 1, 0]); + }); - test("strand with repeated nucleotide", () => { - expect(countNucleotides("GGGGGGG")).toEqual([0, 0, 7, 0]); - }); + test("strand with repeated nucleotide", () => { + expect(countNucleotides("GGGGGGG")).toEqual([0, 0, 7, 0]); + }); - test("strand with multiple nucleotides", () => { - expect( - countNucleotides( - "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC" - ) - ).toEqual([20, 12, 17, 21]); - }); + test("strand with multiple nucleotides", () => { + expect( + countNucleotides( + "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC" + ) + ).toEqual([20, 12, 17, 21]); + }); - test("strand with invalid nucleotides", () => { - expect(countNucleotides("AGXXACT")).toEqual([-1, -1, -1, -1]); - }); -}); + test("strand with invalid nucleotides", () => { + expect(countNucleotides("AGXXACT")).toEqual([-1, -1, -1, -1]); + }); +}); \ No newline at end of file diff --git a/wasm/nucleotide-count/nucleotide-count.wat b/wasm/nucleotide-count/nucleotide-count.wat index 48e0fdcb..cdd43e1c 100644 --- a/wasm/nucleotide-count/nucleotide-count.wat +++ b/wasm/nucleotide-count/nucleotide-count.wat @@ -1,12 +1,226 @@ +;; https://exercism.org/tracks/wasm/exercises/nucleotide-count + (module + (import "console" "log_mem_as_utf8" (func $log_mem_as_utf8 (param $byteOffset i32) (param $length i32))) + (import "console" "log_i32_u" (func $log_i32_u (param i32))) + ;; (import "console" "log_i64_u" (func $log_i64_u (param i64))) + ;; string log example + ;; (call $log_mem_as_utf8 (local.get $offset) (local.get $length)) + ;; i32 log example + ;; (call $log_i32_u (local.get $number)) + (memory (export "mem") 1) - (func (export "countNucleotides") (param $offset i32) (param $length i32) (result i32 i32 i32 i32) - (return - (i32.const -1) - (i32.const -1) - (i32.const -1) - (i32.const -1) + (global $a_offset i32 (i32.const 1000)) + (global $c_offset i32 (i32.const 1001)) + (global $g_offset i32 (i32.const 1002)) + (global $t_offset i32 (i32.const 1003)) + + (global $false i32 (i32.const 0)) + (global $true i32 (i32.const 1)) + + ;; 0=>false/disable, 1=>true/enable + (global $debug i32 (i32.const 0)) + + (data (i32.const 1000) "ACGT") + (global $data_length i32 (i32.const 4)) + + (data (i32.const 2000) "ERROR") + (global $error_offset i32 (i32.const 2000)) + (global $error_length i32 (i32.const 5)) + + (data (i32.const 2005) "NOT_A_MATCH") + (global $not_a_match_offset i32 (i32.const 2005)) + (global $not_a_match_length i32 (i32.const 11)) + (global $match_offset i32 (i32.const 2011)) + (global $match_length i32 (i32.const 5)) + + (data (i32.const 2016) "SEQUENCE") + (global $title_offset i32 (i32.const 2016)) + (global $title_length i32 (i32.const 8)) + + (data (i32.const 2024) "CHECKING") + (global $checking_offset i32 (i32.const 2024)) + (global $checking_length i32 (i32.const 8)) + + (func (export "countNucleotides") (param $sequence_offset i32) (param $sequence_length i32) (result i32 i32 i32 i32) + (local $sequence_ptr i32) + (local $found i32) + + (local $a_count i32) + (local $c_count i32) + (local $g_count i32) + (local $t_count i32) + + (local $error i32) + + (local.set $sequence_ptr (local.get $sequence_offset)) + + (local.set $a_count (i32.const 0)) + (local.set $c_count (i32.const 0)) + (local.set $g_count (i32.const 0)) + (local.set $t_count (i32.const 0)) + + (local.set $error (i32.const -1)) + + (if + (i32.eq + (local.get $sequence_length) + (i32.const 0) + ) ;; eq + (then + (return + (local.get $a_count) + (local.get $c_count) + (local.get $g_count) + (local.get $t_count) + ) ;; return + ) ;; then + ) ;; if other + + (call $debug_print_str (global.get $title_offset) (global.get $title_length)) + (call $debug_print_str (local.get $sequence_offset) (local.get $sequence_length)) + + (loop $my_loop + (local.set $found (global.get $false)) + + (call $debug_print_str (global.get $checking_offset) (global.get $checking_length)) + (call $debug_print_str (local.get $sequence_ptr) (i32.const 1)) + + (call $debug_print_str (global.get $a_offset) (i32.const 1)) + (if + (i32.eq + (i32.load8_u (global.get $a_offset)) + (i32.load8_u (local.get $sequence_ptr)) + ) ;; eq + (then + (local.set $a_count (i32.add (local.get $a_count) (i32.const 1))) + (local.set $found (global.get $true)) + + (call $debug_print_str (global.get $match_offset) (global.get $match_length)) + (call $debug_print_i32u (local.get $a_count)) + ) ;; then + (else + (call $debug_print_str (global.get $not_a_match_offset) (global.get $not_a_match_length)) + ) ;; + ) ;; if a + + (call $debug_print_str (global.get $c_offset) (i32.const 1)) + (if + (i32.eq + (i32.load8_u (global.get $c_offset)) + (i32.load8_u (local.get $sequence_ptr)) + ) ;; eq + (then + (local.set $c_count (i32.add (local.get $c_count) (i32.const 1))) + (local.set $found (global.get $true)) + + (call $debug_print_str (global.get $match_offset) (global.get $match_length)) + (call $debug_print_i32u (local.get $c_count)) + ) ;; then + (else + (call $debug_print_str (global.get $not_a_match_offset) (global.get $not_a_match_length)) + ) ;; + ) ;; if c + + (call $debug_print_str (global.get $g_offset) (i32.const 1)) + (if + (i32.eq + (i32.load8_u (global.get $g_offset)) + (i32.load8_u (local.get $sequence_ptr)) + ) ;; eq + (then + (local.set $g_count (i32.add (local.get $g_count) (i32.const 1))) + (local.set $found (global.get $true)) + + (call $debug_print_str (global.get $match_offset) (global.get $match_length)) + (call $debug_print_i32u (local.get $g_count)) + ) ;; then + (else + (call $debug_print_str (global.get $not_a_match_offset) (global.get $not_a_match_length)) + ) ;; + ) ;; if g + + (call $debug_print_str (global.get $t_offset) (i32.const 1)) + (if + (i32.eq + (i32.load8_u (global.get $t_offset)) + (i32.load8_u (local.get $sequence_ptr)) + ) ;; eq + (then + (local.set $t_count (i32.add (local.get $t_count) (i32.const 1))) + (local.set $found (global.get $true)) + + (call $debug_print_str (global.get $match_offset) (global.get $match_length)) + (call $debug_print_i32u (local.get $t_count)) + ) ;; then + (else + (call $debug_print_str (global.get $not_a_match_offset) (global.get $not_a_match_length)) + ) ;; + ) ;; if t + + (if + (i32.eq + (local.get $found) + (global.get $false) + ) ;; eq + (then + (call $debug_print_str (global.get $error_offset) (global.get $error_length)) + (call $debug_print_str (local.get $sequence_ptr) (i32.const 1)) + (call $debug_print_i32u (local.get $sequence_ptr)) + (call $debug_print_i32u (local.get $sequence_length)) + + (return + (local.get $error) + (local.get $error) + (local.get $error) + (local.get $error) + ) ;; return + ) ;; then + ) ;; if other + + (local.set $sequence_ptr (i32.add (local.get $sequence_ptr) (i32.const 1))) + + (call $debug_print_i32u (local.get $sequence_ptr)) + + ;; break if false + (br_if $my_loop + (i32.lt_u + (local.get $sequence_ptr) + (i32.add (local.get $sequence_offset) (local.get $sequence_length)) + ) ;; ge + ) ;; br_if + ) ;; loop + + (return + (local.get $a_count) + (local.get $c_count) + (local.get $g_count) + (local.get $t_count) ) ) -) + + (func $debug_print_i32u (export "debug_print_i32u") (param $value i32) + (if + (i32.eq + (global.get $debug) + (global.get $true) + ) ;; eq + (then + (call $log_i32_u (local.get $value)) + ) ;; then + ) ;; if debugging + ) ;; debug_print_i32u() + + (func $debug_print_str (export "debug_print_str") (param $offset i32) (param $length i32) + (if + (i32.eq + (global.get $debug) + (global.get $true) + ) ;; eq + (then + (call $log_mem_as_utf8 (local.get $offset) (local.get $length)) + ) ;; then + ) ;; if debugging + ) ;; debug_print_str() +) ;; module diff --git a/wasm/nucleotide-count/run-tests-wasm.txt b/wasm/nucleotide-count/run-tests-wasm.txt new file mode 100644 index 00000000..1fca51ff --- /dev/null +++ b/wasm/nucleotide-count/run-tests-wasm.txt @@ -0,0 +1,136 @@ +Running automated test file(s): + + +=============================================================================== + +Running: ../../.github/citools/wasm/wasm-lint-formatter + +Running WebAssembly Formatter + +Node versions: + + nodejs: v12.22.12 + npm: 9.8.1 + yarn: 1.22.19 + + + ============================================================================== + +Running: js-beautify ./babel.config.js ./nucleotide-count.spec.js + +beautified babel.config.js - unchanged +beautified nucleotide-count.spec.js - unchanged + +real 0m0.091s +user 0m0.089s +sys 0m0.015s + + + ============================================================================== + +Exit code: 0 + +real 0m0.403s +user 0m0.386s +sys 0m0.079s + +real 0m0.406s +user 0m0.388s +sys 0m0.081s + +=============================================================================== + +Running: npm install + +up to date in 493ms + +107 packages are looking for funding + run `npm fund` for details + +real 0m0.681s +user 0m0.939s +sys 0m0.085s + +=============================================================================== + +Running: ../../.github/citools/wasm/wasm-test-with-coverage + +Running WebAssembly Tests With Coverage + +Node versions: + + nodejs: v12.22.12 + npm: 9.8.1 + yarn: 1.22.19 + + + ============================================================================== + +Running: rm -rf ./coverage + + +real 0m0.001s +user 0m0.000s +sys 0m0.001s + + + ============================================================================== + +Running: npm run test -- --coverage + + +> test +> node --experimental-vm-modules node_modules/jest/bin/jest.js ./* --coverage + +(node:19987) ExperimentalWarning: VM Modules is an experimental feature. This feature could change at any time +(Use `node --trace-warnings ...` to show where the warning was created) +PASS ./nucleotide-count.spec.js + count all nucleotides in a strand + ✓ empty strand (3 ms) + ✓ can count one nucleotide in single-character input + ✓ strand with repeated nucleotide (1 ms) + ✓ strand with multiple nucleotides + ✓ strand with invalid nucleotides (1 ms) + +----------|---------|----------|---------|---------|------------------- +File | % Stmts | % Branch | % Funcs | % Lines | Uncovered Line #s +----------|---------|----------|---------|---------|------------------- +All files | 0 | 0 | 0 | 0 | +----------|---------|----------|---------|---------|------------------- +Test Suites: 1 passed, 1 total +Tests: 5 passed, 5 total +Snapshots: 0 total +Time: 0.33 s, estimated 2 s +Ran all test suites matching /.\/HELP.md|.\/LICENSE|.\/README.md|.\/babel.config.js|.\/node_modules|.\/nucleotide-count.spec.js|.\/nucleotide-count.wat|.\/package-lock.json|.\/package.json|.\/run-tests-wasm.txt/i. + +real 0m0.937s +user 0m0.909s +sys 0m0.147s + + + ============================================================================== + +Exit code: 0 + +real 0m1.247s +user 0m1.201s +sys 0m0.217s + +real 0m1.250s +user 0m1.203s +sys 0m0.217s + +=============================================================================== + +Running: misspell ./nucleotide-count.wat + +real 0m0.039s +user 0m0.036s +sys 0m0.017s + +=============================================================================== + +/home/vpayno/git_vpayno/exercism-workspace/wasm + +=============================================================================== +